Query 014046
Match_columns 432
No_of_seqs 172 out of 464
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 01:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2761 START domain-containin 100.0 2.8E-50 6E-55 380.7 23.0 208 128-341 7-219 (219)
2 cd08870 START_STARD2_7-like Li 100.0 1.7E-45 3.6E-50 348.1 27.0 204 128-337 2-209 (209)
3 cd08910 START_STARD2-like Lipi 100.0 7.8E-43 1.7E-47 330.5 25.0 196 128-337 4-207 (207)
4 cd08911 START_STARD7-like Lipi 100.0 2.1E-42 4.6E-47 327.2 24.9 184 146-337 19-207 (207)
5 cd08871 START_STARD10-like Lip 100.0 3.2E-40 7E-45 314.0 27.3 204 128-346 6-212 (222)
6 cd08872 START_STARD11-like Cer 100.0 5.1E-36 1.1E-40 289.6 25.0 208 129-348 7-234 (235)
7 cd08868 START_STARD1_3_like Ch 100.0 5.6E-34 1.2E-38 268.7 22.4 191 130-336 10-207 (208)
8 cd08906 START_STARD3-like Chol 100.0 1.3E-33 2.8E-38 268.2 22.5 190 131-335 11-207 (209)
9 cd08904 START_STARD6-like Lipi 100.0 9.9E-33 2.1E-37 261.8 24.2 193 129-335 6-204 (204)
10 smart00234 START in StAR and p 100.0 1E-32 2.3E-37 256.7 23.1 193 131-338 5-204 (206)
11 cd08905 START_STARD1-like Chol 100.0 1.5E-32 3.2E-37 260.5 21.5 192 129-335 9-207 (209)
12 cd08903 START_STARD5-like Lipi 100.0 5.4E-31 1.2E-35 249.7 24.8 190 131-336 8-207 (208)
13 cd08867 START_STARD4_5_6-like 100.0 1.3E-30 2.9E-35 245.4 23.5 190 131-334 8-205 (206)
14 cd08874 START_STARD9-like C-te 100.0 3.7E-30 8.1E-35 244.3 22.5 174 138-325 15-195 (205)
15 PF01852 START: START domain; 100.0 4.5E-29 9.8E-34 231.6 24.0 192 133-339 6-205 (206)
16 cd08869 START_RhoGAP C-termina 100.0 3E-29 6.5E-34 235.8 22.1 182 134-335 7-195 (197)
17 cd08914 START_STARD15-like Lip 100.0 2.2E-29 4.7E-34 243.2 21.5 188 129-339 41-234 (236)
18 cd08902 START_STARD4-like Lipi 100.0 1.5E-29 3.3E-34 238.3 18.9 175 148-335 23-202 (202)
19 cd00177 START Lipid-binding ST 100.0 1.5E-28 3.3E-33 222.8 24.3 184 134-333 4-191 (193)
20 cd08877 START_2 Uncharacterize 100.0 1.4E-28 3.1E-33 233.0 23.0 187 134-336 11-214 (215)
21 cd08913 START_STARD14-like Lip 100.0 9.4E-29 2E-33 239.8 21.0 181 137-338 51-237 (240)
22 cd08876 START_1 Uncharacterize 100.0 3.2E-28 6.9E-33 225.4 22.9 173 148-334 17-194 (195)
23 cd08873 START_STARD14_15-like 100.0 1.6E-28 3.4E-33 237.4 20.7 189 128-338 39-232 (235)
24 cd08907 START_STARD8-like C-te 99.9 9.8E-26 2.1E-30 213.0 21.3 184 132-334 13-202 (205)
25 cd08908 START_STARD12-like C-t 99.9 4.9E-25 1.1E-29 209.2 22.7 183 132-334 13-201 (204)
26 cd08909 START_STARD13-like C-t 99.9 6.2E-24 1.4E-28 201.8 22.9 169 149-334 28-202 (205)
27 PLN00188 enhanced disease resi 99.9 4.7E-24 1E-28 229.7 19.1 198 147-355 197-407 (719)
28 KOG1739 Serine/threonine prote 99.8 1.9E-18 4.1E-23 178.1 12.7 194 146-348 401-610 (611)
29 cd08864 SRPBCC_DUF3074 DUF3074 99.6 5.1E-14 1.1E-18 134.4 19.7 163 160-326 15-198 (208)
30 cd08875 START_ArGLABRA2_like C 99.3 1.7E-10 3.6E-15 111.8 17.6 194 131-334 9-228 (229)
31 cd07813 COQ10p_like Coenzyme Q 99.1 1.4E-09 3.1E-14 95.0 13.4 134 178-336 2-137 (138)
32 cd08866 SRPBCC_11 Ligand-bindi 98.9 1E-07 2.2E-12 83.2 17.3 132 178-335 2-143 (144)
33 PF11274 DUF3074: Protein of u 98.9 1.1E-07 2.4E-12 89.5 17.2 140 185-325 13-175 (184)
34 cd07819 SRPBCC_2 Ligand-bindin 98.8 5.6E-07 1.2E-11 77.4 16.4 134 176-333 3-139 (140)
35 cd05018 CoxG Carbon monoxide d 98.6 1.9E-06 4E-11 74.5 15.9 135 176-334 2-143 (144)
36 PF03364 Polyketide_cyc: Polyk 98.2 7.8E-05 1.7E-09 64.0 15.4 127 185-331 2-130 (130)
37 cd07821 PYR_PYL_RCAR_like Pyra 98.0 0.00029 6.3E-09 60.0 15.0 134 176-334 2-139 (140)
38 PRK10724 hypothetical protein; 98.0 0.00028 6E-09 64.9 15.0 137 174-335 14-152 (158)
39 cd07817 SRPBCC_8 Ligand-bindin 97.9 0.0008 1.7E-08 57.7 14.9 128 178-333 3-136 (139)
40 cd08860 TcmN_ARO-CYC_like N-te 97.4 0.01 2.2E-07 53.6 15.9 134 180-335 6-143 (146)
41 cd08861 OtcD1_ARO-CYC_like N-t 97.4 0.0076 1.6E-07 52.3 14.2 128 180-333 4-139 (142)
42 cd07812 SRPBCC START/RHO_alpha 97.0 0.047 1E-06 44.6 14.9 131 178-332 2-139 (141)
43 PF10604 Polyketide_cyc2: Poly 97.0 0.055 1.2E-06 46.0 15.6 132 176-334 3-138 (139)
44 cd07824 SRPBCC_6 Ligand-bindin 96.7 0.086 1.9E-06 46.6 15.2 132 176-332 2-144 (146)
45 cd08865 SRPBCC_10 Ligand-bindi 96.6 0.22 4.8E-06 42.0 16.5 130 179-334 3-138 (140)
46 cd07822 SRPBCC_4 Ligand-bindin 96.3 0.26 5.5E-06 41.8 15.1 138 177-338 2-140 (141)
47 cd08862 SRPBCC_Smu440-like Lig 96.3 0.34 7.4E-06 41.3 15.5 130 176-334 2-136 (138)
48 COG5637 Predicted integral mem 94.5 1.2 2.6E-05 42.5 13.6 140 174-339 69-209 (217)
49 cd07818 SRPBCC_1 Ligand-bindin 94.5 2.1 4.6E-05 37.3 14.7 37 177-214 4-40 (150)
50 cd07823 SRPBCC_5 Ligand-bindin 94.1 3.2 6.9E-05 36.5 15.0 133 180-334 4-144 (146)
51 cd07814 SRPBCC_CalC_Aha1-like 92.3 6.2 0.00013 33.4 14.9 134 178-335 3-138 (139)
52 cd07825 SRPBCC_7 Ligand-bindin 92.0 5.7 0.00012 34.2 13.3 136 177-334 2-143 (144)
53 COG2867 Oligoketide cyclase/li 91.8 1.9 4.1E-05 39.6 10.2 133 175-331 2-136 (146)
54 KOG3845 MLN, STAR and related 89.5 0.032 6.9E-07 55.0 -3.7 176 150-339 27-211 (241)
55 cd07820 SRPBCC_3 Ligand-bindin 88.5 16 0.00034 31.7 13.7 36 179-215 3-38 (137)
56 COG3427 Carbon monoxide dehydr 74.5 72 0.0016 29.4 15.0 133 176-334 2-143 (146)
57 cd08896 SRPBCC_CalC_Aha1-like_ 73.9 61 0.0013 28.4 15.7 137 177-334 2-144 (146)
58 KOG3177 Oligoketide cyclase/li 67.4 24 0.00052 34.5 7.6 132 175-327 68-201 (227)
59 PF08327 AHSA1: Activator of H 67.4 70 0.0015 26.4 14.6 121 185-334 1-123 (124)
60 cd08899 SRPBCC_CalC_Aha1-like_ 63.3 1.1E+02 0.0024 27.3 12.6 34 172-206 8-41 (157)
61 cd08894 SRPBCC_CalC_Aha1-like_ 57.4 1.3E+02 0.0028 26.1 15.1 132 177-334 2-137 (139)
62 cd07816 Bet_v1-like Ligand-bin 57.1 1.4E+02 0.0031 26.5 16.3 114 177-308 3-119 (148)
63 PF13940 Ldr_toxin: Toxin Ldr, 55.1 9 0.0002 26.9 1.7 18 26-43 14-31 (35)
64 cd08893 SRPBCC_CalC_Aha1-like_ 51.4 1.4E+02 0.0031 24.9 13.0 132 177-334 2-134 (136)
65 PF10766 DUF2592: Protein of u 47.3 22 0.00047 25.9 2.7 19 23-41 7-25 (41)
66 KOG2200 Tumour suppressor prot 44.8 5.7 0.00012 43.9 -0.8 71 234-318 575-647 (674)
67 PF05545 FixQ: Cbb3-type cytoc 42.3 31 0.00066 25.5 3.0 30 18-47 4-33 (49)
68 COG4420 Predicted membrane pro 33.8 68 0.0015 30.9 4.6 41 3-47 47-87 (191)
69 PF06240 COXG: Carbon monoxide 32.8 3.4E+02 0.0074 23.8 18.0 131 180-334 2-139 (140)
70 TIGR01594 holin_lambda phage h 31.2 54 0.0012 28.6 3.3 18 11-28 40-57 (107)
71 PRK11876 petM cytochrome b6-f 30.5 51 0.0011 23.0 2.3 23 20-42 2-24 (32)
72 cd08897 SRPBCC_CalC_Aha1-like_ 29.8 51 0.0011 28.4 2.9 28 177-205 2-29 (133)
73 cd08895 SRPBCC_CalC_Aha1-like_ 28.9 3.9E+02 0.0084 23.2 17.0 28 178-206 3-30 (146)
74 PF06295 DUF1043: Protein of u 28.6 29 0.00063 30.9 1.2 14 30-43 2-15 (128)
75 PF08041 PetM: PetM family of 26.7 75 0.0016 22.0 2.6 21 22-42 2-22 (31)
76 cd08898 SRPBCC_CalC_Aha1-like_ 26.5 68 0.0015 27.3 3.1 30 177-207 3-32 (145)
77 cd01324 cbb3_Oxidase_CcoQ Cyto 26.4 87 0.0019 23.4 3.2 28 21-48 8-35 (48)
78 COG3330 Uncharacterized protei 22.9 84 0.0018 30.7 3.2 88 177-267 58-155 (215)
79 PF03601 Cons_hypoth698: Conse 22.8 38 0.00081 34.6 0.9 37 27-63 26-78 (305)
80 PF11772 EpuA: DNA-directed RN 20.6 51 0.0011 24.7 1.0 14 30-43 8-21 (47)
81 cd08901 SRPBCC_CalC_Aha1-like_ 20.5 5.5E+02 0.012 22.0 12.9 28 178-206 3-30 (136)
No 1
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-50 Score=380.72 Aligned_cols=208 Identities=51% Similarity=0.840 Sum_probs=190.0
Q ss_pred CCCHHHHHHHHHHHhcC--CCCCCceEEEccCCCCCcEEEEE-eCCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHH
Q 014046 128 FVTEDDLEHLCRLVEEK--DGGPVWIQMMDRSTPTMAYQAWR-RDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKW 204 (432)
Q Consensus 128 ~vtd~Dl~~~~~~~e~~--~~~~~We~v~dk~~~~~gikVwr-R~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kW 204 (432)
.++++|+.+++++++.+ +++.+|+++++ +.++.+|+ |.|.+|+++||+.|+|+|+||+.|+|+++|+|||++|
T Consensus 7 ~vs~~~~~~~~~~~e~~~~~~~~~We~~~~----k~~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkW 82 (219)
T KOG2761|consen 7 GVSEEDLPELLDLLEEKACDAGQGWELVMD----KSTPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRKKW 82 (219)
T ss_pred cccccchHHHHHhhcccccCcccchhhhcc----cCCceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHHHH
Confidence 69999999999999998 66779999999 78899999 6888999999999999999999999999999999999
Q ss_pred hHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeC-CEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEE
Q 014046 205 DDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESG-RSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYI 283 (432)
Q Consensus 205 D~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d-~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvI 283 (432)
|.++.++++||+++.+|++|+||+.|||+|++|||||+.||+|+.+ +.++|++++|+||++|+++++||+..+.|||+|
T Consensus 83 D~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I 162 (219)
T KOG2761|consen 83 DDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLI 162 (219)
T ss_pred HHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEE
Confidence 9999999999998878999999999999999999999999999877 889999999999999999999999999999999
Q ss_pred E-EeecCCCCCccccEEEEEEEEecCCCCHHHHHHhHhhhHHHHHHHHHHHHHHHHHhh
Q 014046 284 R-AVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALRAYVKER 341 (432)
Q Consensus 284 r-pl~s~~~~G~~~aCeVt~~~~~DPGIP~~LvN~~v~~g~~~~lkkL~~alrkY~~~r 341 (432)
+ +..+..++| ++|+++|+++.+.|||.|++|++++++||++++||++||++|++++
T Consensus 163 ~~~~~~~~~~~--~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~~ 219 (219)
T KOG2761|consen 163 RVESRSGDEQG--CACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEKR 219 (219)
T ss_pred EcccccCCCCc--cEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhcC
Confidence 9 655544333 3666666665555599999999999999999999999999999764
No 2
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=100.00 E-value=1.7e-45 Score=348.13 Aligned_cols=204 Identities=52% Similarity=0.900 Sum_probs=185.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhH
Q 014046 128 FVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDD 206 (432)
Q Consensus 128 ~vtd~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~ 206 (432)
.|+|+||++|++++++....++|+++++|.++++.|+||+| .+++|+++||++++|+++|+++|+++++|.++|++||+
T Consensus 2 ~~~~~d~~~~~~~~~~~~~~~~W~~~~~k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~ 81 (209)
T cd08870 2 HVSEEDLRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDE 81 (209)
T ss_pred CCCHHHHHHHHHHhcCcCCCCcceEhhhccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhh
Confidence 58999999999999887666789999996555555999999 56689999999999998999999999999999999999
Q ss_pred hcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEee-CCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEE
Q 014046 207 MLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWES-GRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRA 285 (432)
Q Consensus 207 tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~-d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrp 285 (432)
++.++++|+..+.+++.|+||+.++|||++|||||+.|+++++ ++.++|++++++||.+|++ |+|||+.+.|+|+|+|
T Consensus 82 ~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p 160 (209)
T cd08870 82 TVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRA 160 (209)
T ss_pred heeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEE
Confidence 9999999998554478999999999999999999999998876 7889999999999999999 9999999999999999
Q ss_pred eecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHH
Q 014046 286 VESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAY 337 (432)
Q Consensus 286 l~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY 337 (432)
++.. +| .|+++|+++.|| | ||.|++|+++++++|++|++|+++|++|
T Consensus 161 ~~~~--~~---~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~~Y 209 (209)
T cd08870 161 VKGD--GQ---GSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209 (209)
T ss_pred ecCC--CC---ceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 9621 22 368999999999 4 9999999999999999999999999988
No 3
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=100.00 E-value=7.8e-43 Score=330.51 Aligned_cols=196 Identities=22% Similarity=0.451 Sum_probs=175.5
Q ss_pred CCCHHHHHHHHHHHhcC-CCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHh
Q 014046 128 FVTEDDLEHLCRLVEEK-DGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWD 205 (432)
Q Consensus 128 ~vtd~Dl~~~~~~~e~~-~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD 205 (432)
.+||+||+|+++++++. .++++|+++++ +++|+||+| .+++|+.+||++++|+++|+++|+++++|.++|++||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~W~l~~~----~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd 79 (207)
T cd08910 4 TFSEEQFREACAELQQPALDGAAWELLVE----SSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWD 79 (207)
T ss_pred ccCHHHHHHHHHHhcCCCCCCCCeEEEEe----cCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHH
Confidence 59999999999999854 45678999999 899999999 8889999999999998899999999999999999999
Q ss_pred HhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe---eCC-EEEEEEeccCCCCCCCCCCcEEEEEeeeEE
Q 014046 206 DMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE---SGR-SYYCVTKGVPYTSVPRRNKPKRVDLFYSSW 281 (432)
Q Consensus 206 ~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~---~d~-~~~ivskSV~hp~~P~~~g~VRV~~~~Sgw 281 (432)
+++.+ +++. ..+++.|+||..|+|||+||||||+.|+... +++ .+++++++++||.+|+++|+||++.+.++|
T Consensus 80 ~~~~~--~~~~-~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~ 156 (207)
T cd08910 80 QYVKE--LYEK-ECDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSL 156 (207)
T ss_pred HHHHh--heee-cCCCCEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEE
Confidence 99987 4553 3457889999999999999999999876542 233 457889999999999999999999999999
Q ss_pred EEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHHHHHHHHHHHH
Q 014046 282 YIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAY 337 (432)
Q Consensus 282 vIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~~alrkY 337 (432)
+|+|... + .|+++|++|.||| ||.|++|+++++++++|+++|++||++|
T Consensus 157 ~i~p~~~----~---~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka~~~y 207 (207)
T cd08910 157 AIESDGK----K---GSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKACQNY 207 (207)
T ss_pred EEEeCCC----C---ceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 9998742 2 3899999999995 9999999999999999999999999988
No 4
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=2.1e-42 Score=327.18 Aligned_cols=184 Identities=26% Similarity=0.403 Sum_probs=168.0
Q ss_pred CCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEE
Q 014046 146 GGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMV 224 (432)
Q Consensus 146 ~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~I 224 (432)
+.++|+++++ +++|+||+| .+++|+.+||++++|.|+|+++|+++++|.++|++||+++.++++|++...++++|
T Consensus 19 ~~~~W~l~~~----~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIE----KKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEE----cCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEE
Confidence 3446999999 899999999 66699999999999989999999999999999999999999999999865558899
Q ss_pred EEEEEeeceeecCceEEEEEEEEee--CCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEE
Q 014046 225 VQWVRKFPFFCSDREYIIGRRIWES--GRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVIL 302 (432)
Q Consensus 225 vY~v~K~P~PvSdRDyV~~Rri~~~--d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~ 302 (432)
+||..++|||++|||||+.|+++.+ ++.++|++++++||.+|+++|+|||+.+.|+|+|+|+++.+++ .|+++|
T Consensus 95 ~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~----~~~~~~ 170 (207)
T cd08911 95 IYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEP----GFEFVL 170 (207)
T ss_pred EEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCC----CeEEEE
Confidence 9999999999999999999987754 4567899999999999999999999999999999999643323 379999
Q ss_pred EEEecCC--CCHHHHHHhHhhhHHHHHHHHHHHHHHH
Q 014046 303 FHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAY 337 (432)
Q Consensus 303 ~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~~alrkY 337 (432)
++|+||| ||.|++|+++++++++||++|++||++|
T Consensus 171 ~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~y 207 (207)
T cd08911 171 TYFDNPGVNIPSYITSWVAMSGMPDFLERLRNAALKY 207 (207)
T ss_pred EEEeCCCCccCHHHHHHHHHhhccHHHHHHHHHHhcC
Confidence 9999995 9999999999999999999999999988
No 5
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=3.2e-40 Score=313.98 Aligned_cols=204 Identities=19% Similarity=0.303 Sum_probs=188.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhH
Q 014046 128 FVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDD 206 (432)
Q Consensus 128 ~vtd~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~ 206 (432)
++|++||+.|++++++.+ +|+++++ +++++||+| .+++++..||++++++++++++++++++|.++|++||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~---~W~~~~~----~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~ 78 (222)
T cd08871 6 LPTDADFEEFKKLCDSTD---GWKLKYN----KNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDS 78 (222)
T ss_pred CCCHHHHHHHHHHhcCCC---CcEEEEc----CCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhh
Confidence 899999999999996533 6999999 889999999 56677899999999988999999999999999999999
Q ss_pred hcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEe
Q 014046 207 MLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAV 286 (432)
Q Consensus 207 tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl 286 (432)
++.++++|++.+ +++.|+|++.++|||+++||||+.|++...++.+++++.|++|+.+|+++|+||++.+.+||+|+|+
T Consensus 79 ~~~e~~~ie~~d-~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~ 157 (222)
T cd08871 79 NMIESFDICQLN-PNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPT 157 (222)
T ss_pred hhceeEEEEEcC-CCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEEC
Confidence 999999999875 5678999999999999999999998877777889999999999999999999999999999999998
Q ss_pred ecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHHHHhhcCCCC
Q 014046 287 ESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGAS 346 (432)
Q Consensus 287 ~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY~~~r~~~~~ 346 (432)
+. + .|+++|+.|.|| | ||+|++|+++.+.++.+|++|+++|++|+++++..+|
T Consensus 158 ~~----~---~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~ 212 (222)
T cd08871 158 GP----K---GCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNP 212 (222)
T ss_pred CC----C---CEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 62 2 389999999999 5 9999999999999999999999999999999887766
No 6
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=100.00 E-value=5.1e-36 Score=289.64 Aligned_cols=208 Identities=18% Similarity=0.315 Sum_probs=174.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCC--eEEEEEEEecCCHHHHHHhhcCcchhhHHh
Q 014046 129 VTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPP--QYRSRTVYEDVTPEMVRDFFWDDDSRLKWD 205 (432)
Q Consensus 129 vtd~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~--~YKa~~v~edaspe~V~d~~~D~e~R~kWD 205 (432)
-.|+.+.+.++++.+..++.+|+++.+ +++++||+| .+++|+. .||+.++++++|++++++++.|.++|.+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~W~l~~~----~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd 82 (235)
T cd08872 7 EVDEKVQEQLTYALEDVGADGWQLFAE----EGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWE 82 (235)
T ss_pred HHHHHHHHHHHHHHccCCCCCCEEEEe----CCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHH
Confidence 356778888888888777778999999 899999999 6777866 799999998899999999999999999999
Q ss_pred HhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEee--------CCEEEEEEeccCCCCCCCCCCcEEEEEe
Q 014046 206 DMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWES--------GRSYYCVTKGVPYTSVPRRNKPKRVDLF 277 (432)
Q Consensus 206 ~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~--------d~~~~ivskSV~hp~~P~~~g~VRV~~~ 277 (432)
.++.+.++||+++ +++.|+|+..|+|||++|||||+.+++... ++.|+++++|++||.+|+++||||+...
T Consensus 83 ~~~~~~~vie~l~-~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~ 161 (235)
T cd08872 83 TTLENFHVVETLS-QDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLT 161 (235)
T ss_pred hhhheeEEEEecC-CCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEE
Confidence 9999999999875 567899999999999999999999876531 1668899999999999999999999985
Q ss_pred e---eEEEEEEeec----CCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014046 278 Y---SSWYIRAVES----RRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLS 348 (432)
Q Consensus 278 ~---SgwvIrpl~s----~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~~alrkY~~~r~~~~~~s 348 (432)
. +++.|.+-.+ .+++| .|+++|+.|.||| ||+|++|+++++++|+||++|+ .|...+..++|++
T Consensus 162 ~~~~~~~~i~~~~g~~~~t~~~~---~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~----~~~~~~~~~~~~~ 234 (235)
T cd08872 162 VAMICQTFVSPPDGNQEITRDNI---LCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFT----SYVQEKTKGKPIL 234 (235)
T ss_pred eeeeeeeeeecCCCcccccCCCC---eEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHH----HHHHHhcCCCccc
Confidence 4 3322332111 01123 4999999999995 9999999999999999998885 4666677777763
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=5.6e-34 Score=268.70 Aligned_cols=191 Identities=15% Similarity=0.258 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCceEEEccCCCCC-cEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHH-hhcCcchhhHHhH
Q 014046 130 TEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTM-AYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRD-FFWDDDSRLKWDD 206 (432)
Q Consensus 130 td~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~-gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d-~~~D~e~R~kWD~ 206 (432)
.++-++.+++++++ ++|++.++ ++ +++||+| .++++ +.||+++++ +++++++++ ++.|.++|++||+
T Consensus 10 ~~~~~~~~~~~~~~----~~W~l~~~----~~~~i~i~~r~~~~~~-~~~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~ 79 (208)
T cd08868 10 GAEALARAWSILTD----PGWKLEKN----TTWGDVVYSRNVPGVG-KVFRLTGVL-DCPAEFLYNELVLNVESLPSWNP 79 (208)
T ss_pred HHHHHHHHHHHhcC----CCceEEEe----cCCCCEEEEEEcCCCc-eEEEEEEEE-cCCHHHHHHHHHcCccccceecC
Confidence 45567777777643 26999999 65 9999999 55555 789999999 699999987 5679999999999
Q ss_pred hcceeeEeeeecCCCcEEEEEEEeec--eeecCceEEEEEEEEeeCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEE
Q 014046 207 MLIYASTLEECPNTGTMVVQWVRKFP--FFCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIR 284 (432)
Q Consensus 207 tl~e~~vLE~~~~~gt~IvY~v~K~P--~PvSdRDyV~~Rri~~~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIr 284 (432)
++.++++|+.++ +++.|+|++.+.| ||+++||||+.|++...++.++++++|++||.+|+++|+||++.+.+||.|+
T Consensus 80 ~~~~~~~i~~~d-~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~ 158 (208)
T cd08868 80 TVLECKIIQVID-DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILR 158 (208)
T ss_pred cccceEEEEEec-CCcEEEEEEecCcCCCcccccceEEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEE
Confidence 999999999876 5678999888765 8999999999998877788899999999999999999999999999999999
Q ss_pred EeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHH
Q 014046 285 AVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRA 336 (432)
Q Consensus 285 pl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrk 336 (432)
|+++++ + .|.++|+.|.|| | ||.|++|+++++++++++++|+++|.+
T Consensus 159 p~~~~~--~---~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 159 PLPNNP--N---KCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred ECCCCC--C---ceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 997532 2 489999999999 5 999999999999999999999998864
No 8
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1.3e-33 Score=268.20 Aligned_cols=190 Identities=14% Similarity=0.234 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHH-HhhcCcchhhHHhHhc
Q 014046 131 EDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVR-DFFWDDDSRLKWDDML 208 (432)
Q Consensus 131 d~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~-d~~~D~e~R~kWD~tl 208 (432)
.|=|++|+++++..+ +|++..+. ++|++||++ .+++| ..||+++++ ++|++.++ +++.|.++|++||+++
T Consensus 11 ~~~~~~~~~~l~~~~---~W~l~~~~---~~gi~V~s~~~~~~~-~~fk~~~~v-~~~~~~l~~~ll~D~~~~~~W~~~~ 82 (209)
T cd08906 11 KEALAVVEQILAQEE---NWKFEKNN---DNGDTVYTLEVPFHG-KTFILKAFM-QCPAELVYQEVILQPEKMVLWNKTV 82 (209)
T ss_pred HHHHHHHHHHhhccc---CCEEEEec---CCCCEEEEeccCCCC-cEEEEEEEE-cCCHHHHHHHHHhChhhccccCccc
Confidence 467899999997744 59998761 489999999 66678 899999999 59999997 5899999999999999
Q ss_pred ceeeEeeeecCCCcEEEEEEEeece---eecCceEEEEEEEEeeCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEE
Q 014046 209 IYASTLEECPNTGTMVVQWVRKFPF---FCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRA 285 (432)
Q Consensus 209 ~e~~vLE~~~~~gt~IvY~v~K~P~---PvSdRDyV~~Rri~~~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrp 285 (432)
.++++|++++ +++.|+| .+..|| |+++||||..|++.+.++.|++++.++.|+.+|+++||||++++.+||.|.|
T Consensus 83 ~~~~vi~~~~-~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 83 SACQVLQRVD-DNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred hhhhheeecc-CCcEEEE-EEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEE
Confidence 9999999876 4567887 888888 8999999999988888888899999999999999999999999999999999
Q ss_pred eecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 286 VESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 286 l~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
.+..+ | .|+++|+.|.|| | ||+|++|.++.++|.+|+++|++.+.
T Consensus 161 ~~~~~--~---~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 161 SASNP--S---VCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CCCCC--C---ceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 75332 2 489999999999 5 99999999999999999999988875
No 9
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=9.9e-33 Score=261.78 Aligned_cols=193 Identities=11% Similarity=0.231 Sum_probs=170.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHh
Q 014046 129 VTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDM 207 (432)
Q Consensus 129 vtd~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~t 207 (432)
+.++-++++++..++. ++|+..++ +++++||+| .++++.+.||++|++ +++|+.+++++.|.+.|.+||.+
T Consensus 6 ~~~~~~~~~l~~~~~~---~gWk~~k~----~~~~~v~~k~~~~~~gkl~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~ 77 (204)
T cd08904 6 IAQETSQEVLGYSRDT---SGWKVVKT----SKKITVSWKPSRKYHGNLYRVEGII-PESPAKLIQFMYQPEHRIKWDKS 77 (204)
T ss_pred HHHHHHHHHHhhhhcc---cCCeEEec----CCceEEEEEEcCCCCceEEEEEEEe-cCCHHHHHHHHhccchhhhhccc
Confidence 3456677778877654 36999998 799999999 567777999999999 59999999999999999999999
Q ss_pred cceeeEeeeecCCCcEEEEEEEee-ce-eecCceEEEEEEEEe-eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEE
Q 014046 208 LIYASTLEECPNTGTMVVQWVRKF-PF-FCSDREYIIGRRIWE-SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIR 284 (432)
Q Consensus 208 l~e~~vLE~~~~~gt~IvY~v~K~-P~-PvSdRDyV~~Rri~~-~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIr 284 (432)
+.++++||++++ +++|.|...+. |+ .+|+||||..|.+.. +++.|++.++|++||.+|+++||||++++++||+|+
T Consensus 78 ~~~~~iie~Id~-~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~ 156 (204)
T cd08904 78 LQVYKMLQRIDS-DTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCS 156 (204)
T ss_pred ccceeeEEEeCC-CcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEE
Confidence 999999999874 57899988663 44 389999999987765 678889999999999999999999999999999999
Q ss_pred EeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 285 AVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 285 pl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
|++++++ .|.++++.+.|| | ||+|++|.++++.+.+|+.+|++|++
T Consensus 157 pl~~~p~-----~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~~ 204 (204)
T cd08904 157 PLPENPA-----YSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDAKDGIK 204 (204)
T ss_pred ECCCCCC-----ceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 9986542 489999999999 7 99999999999999999999999873
No 10
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=1e-32 Score=256.68 Aligned_cols=193 Identities=22% Similarity=0.301 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCC-CCCCeEEEEEEEecCCHH-HHHHhhcCcchhhHHhHh
Q 014046 131 EDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPE-NGPPQYRSRTVYEDVTPE-MVRDFFWDDDSRLKWDDM 207 (432)
Q Consensus 131 d~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~-sGl~~YKa~~v~edaspe-~V~d~~~D~e~R~kWD~t 207 (432)
++.++.+.+..... ++|++.++. ++++++|+| .++ +++..||+.++++ ++++ .+.+++.|.++|++||++
T Consensus 5 ~~~~~~~~~~~~~~---~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~k~~~~v~-~~~~~~~~~~~~d~~~r~~Wd~~ 77 (206)
T smart00234 5 EAAAELLKMAAASE---PGWVLSSEN---ENGDEVRSILSPGRSPGEASRAVGVVP-MVCADLVEELMDDLRYRPEWDKN 77 (206)
T ss_pred HHHHHHHHHhhCCC---CccEEcccc---CCcceEEEEccCCCCceEEEEEEEEEe-cChHHHHHHHHhcccchhhCchh
Confidence 44556666665442 369999862 578899999 444 6789999999997 5665 588899999999999999
Q ss_pred cceeeEeeeecCCCcEEEEEEEeece-eecCceEEEEEEEEe-eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEE
Q 014046 208 LIYASTLEECPNTGTMVVQWVRKFPF-FCSDREYIIGRRIWE-SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRA 285 (432)
Q Consensus 208 l~e~~vLE~~~~~gt~IvY~v~K~P~-PvSdRDyV~~Rri~~-~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrp 285 (432)
+.++++||..+ +++.|+|++.++|| |+++||||+.|++.. +++.++++.+|++||.+|+++|+||++.+.|+|+|+|
T Consensus 78 ~~~~~~ie~~~-~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p 156 (206)
T smart00234 78 VAKAETLEVID-NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEP 156 (206)
T ss_pred cccEEEEEEEC-CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEE
Confidence 99999999876 56799999999999 999999999998776 5677888899999999999999999999999999999
Q ss_pred eecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q 014046 286 VESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAYV 338 (432)
Q Consensus 286 l~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY~ 338 (432)
+++ | .|+++|+.|.|| | ||.|++|.+++++++.+++.|++++++..
T Consensus 157 ~~~----~---~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T smart00234 157 LGN----G---PSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHC 204 (206)
T ss_pred CCC----C---CeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHh
Confidence 874 2 389999999999 5 99999999999999999999988887653
No 11
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=100.00 E-value=1.5e-32 Score=260.55 Aligned_cols=192 Identities=11% Similarity=0.158 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHH-HhhcCcchhhHHhH
Q 014046 129 VTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVR-DFFWDDDSRLKWDD 206 (432)
Q Consensus 129 vtd~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~-d~~~D~e~R~kWD~ 206 (432)
..++.|+.+++++++.+ +|++.+.. +++++||+| .+++| +.||+++++ +++++.++ .++.|.+.+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~---~W~~~~~~---~~gi~v~s~~~~~~~-k~~k~e~~i-~~~~~~l~~~l~~d~e~~~~W~~ 80 (209)
T cd08905 9 QGEEALQKSLSILQDQE---GWKTEIVA---ENGDKVLSKVVPDIG-KVFRLEVVV-DQPLDNLYSELVDRMEQMGEWNP 80 (209)
T ss_pred HHHHHHHHHHHHhcccc---CCEEEEec---CCCCEEEEEEcCCCC-cEEEEEEEe-cCCHHHHHHHHHhchhhhceecc
Confidence 56788999999995433 69999531 689999999 67777 899999999 69999999 56668899999999
Q ss_pred hcceeeEeeeecCCCcEEEEEEEeecee---ecCceEEEEEEEEeeCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEE
Q 014046 207 MLIYASTLEECPNTGTMVVQWVRKFPFF---CSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYI 283 (432)
Q Consensus 207 tl~e~~vLE~~~~~gt~IvY~v~K~P~P---vSdRDyV~~Rri~~~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvI 283 (432)
++.++++|++++ +++.|+|+ ...||| +++||||..|.+.+.++.+++++.++.||.+|+++|+||++...++|.|
T Consensus 81 ~~~~~~vl~~id-~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l 158 (209)
T cd08905 81 NVKEVKILQRIG-KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVL 158 (209)
T ss_pred cchHHHHHhhcC-CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEE
Confidence 999999999876 45788887 778887 9999999988777777778888899999999999999999999999999
Q ss_pred EEeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 284 RAVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 284 rpl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
+|+++++ | .|+++|+.|.|| | ||+|++|.++.++|.+|+++|++.+.
T Consensus 159 ~p~~~~~--~---~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 159 RPLAGDP--S---KTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EECCCCC--C---ceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHh
Confidence 9997533 2 389999999999 5 99999999999999999999988775
No 12
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=5.4e-31 Score=249.72 Aligned_cols=190 Identities=16% Similarity=0.146 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCc--chhhHHhHh
Q 014046 131 EDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDD--DSRLKWDDM 207 (432)
Q Consensus 131 d~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~--e~R~kWD~t 207 (432)
++-++++++.... .++|++.++ +++++||+| .++.....||++|++ ++++++++++++|. .+|++||.+
T Consensus 8 ~~~~~~~l~~~~~---~~~W~~~~~----~~~i~v~~~~~~~~~~~~~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 8 ESVADKMLLYRRD---ESGWKTCRR----TNEVAVSWRPSAEFAGNLYKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred HHHHHHHHhhhcc---ccCCEEEEc----CCCEEEEeeecCCCCCcEEEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 4455666666532 236999999 799999999 445444679999999 59999999999865 478999999
Q ss_pred cceeeEeeeecCCCcEEEEEEEeecee----ecCceEEEEEEEEe-eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEE
Q 014046 208 LIYASTLEECPNTGTMVVQWVRKFPFF----CSDREYIIGRRIWE-SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWY 282 (432)
Q Consensus 208 l~e~~vLE~~~~~gt~IvY~v~K~P~P----vSdRDyV~~Rri~~-~d~~~~ivskSV~hp~~P~~~g~VRV~~~~Sgwv 282 (432)
+.++++||+++ +++.|+|+ ++||| +++||||..|.+.. +++.+++..++++||.+|+++||||++.+++||.
T Consensus 80 ~~~~~vle~id-~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~ 156 (208)
T cd08903 80 VKDFEVVEAIS-DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCF 156 (208)
T ss_pred cccEEEEEEec-CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEE
Confidence 99999999986 45667665 77876 99999999987765 4556777778999999999999999999999999
Q ss_pred EEEeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHH
Q 014046 283 IRAVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRA 336 (432)
Q Consensus 283 Irpl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrk 336 (432)
++|++..+ + .|+|+|+.|.|| | ||+|++|.++.++|..|+++|++++++
T Consensus 157 ~~~~~~~~--~---~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 157 CEPVPGEP--D---KTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEECCCCC--C---ceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 99998543 2 489999999999 5 999999999999999999999998864
No 13
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=1.3e-30 Score=245.44 Aligned_cols=190 Identities=16% Similarity=0.194 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcC--cchhhHHhHh
Q 014046 131 EDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWD--DDSRLKWDDM 207 (432)
Q Consensus 131 d~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D--~e~R~kWD~t 207 (432)
++=.+++++.++.. ++|++.++ +++++||+| ..+.....||+++++ +++++++++++.| .++|++||++
T Consensus 8 ~~~~~~~~~~~~~~---~~W~~~~~----~~~i~v~~~~~~~~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~r~~Wd~~ 79 (206)
T cd08867 8 EKLANEALQYINDT---DGWKVLKT----VKNITVSWKPSTEFTGHLYRAEGIV-DALPEKVIDVIIPPCGGLRLKWDKS 79 (206)
T ss_pred HHHHHHHHHHhcCc---CCcEEEEc----CCCcEEEEecCCCCCCEEEEEEEEE-cCCHHHHHHHHHhcCcccccccccc
Confidence 33456666666543 36999998 789999999 333444679999999 5899999999999 8999999999
Q ss_pred cceeeEeeeecCCCcEEEEEEEeec--eeecCceEEEEEEEEe-eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEE
Q 014046 208 LIYASTLEECPNTGTMVVQWVRKFP--FFCSDREYIIGRRIWE-SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIR 284 (432)
Q Consensus 208 l~e~~vLE~~~~~gt~IvY~v~K~P--~PvSdRDyV~~Rri~~-~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIr 284 (432)
+.++++|+.++ +++.|+|+..+.| .++++||||+.+.+.. +++.+++..+|++||.+|+.+|+||++...+||.|+
T Consensus 80 ~~~~~~le~id-~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~ 158 (206)
T cd08867 80 LKHYEVLEKIS-EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCS 158 (206)
T ss_pred ccceEEEEEeC-CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEE
Confidence 99999999886 4677888754433 2489999998875433 345788899999999999999999999999999999
Q ss_pred EeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHH
Q 014046 285 AVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 285 pl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~al 334 (432)
|.+.++ + .|.++|+.|.|| | ||+|++|.++.+++..|+++|++++
T Consensus 159 p~~~~~--~---~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 159 PLKGSP--D---KSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred ECCCCC--C---ceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 987533 2 489999999999 6 9999999999999999999998875
No 14
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=3.7e-30 Score=244.33 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=151.1
Q ss_pred HHHHhcCCCCCCceEEEccCCCCCcEEEEEeC-CCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeee
Q 014046 138 CRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRD-PENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEE 216 (432)
Q Consensus 138 ~~~~e~~~~~~~We~v~dk~~~~~gikVwrR~-p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~ 216 (432)
+++|+.. ++|++..+ +++++||+|. ++ .+..||+++++ +++++++++++.|.++|++||+++.++++|++
T Consensus 15 l~~~~~~---~gW~l~~~----~~gI~Vy~k~~~~-~~~~~~ge~~v-~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~ 85 (205)
T cd08874 15 LDQCQAT---AGWSYQCL----EKDVVIYYKVFNG-TYHGFLGAGVI-KAPLATVWKAVKDPRTRFLYDTMIKTARIHKT 85 (205)
T ss_pred HHhhhcc---CCcEEEec----CCCEEEEEecCCC-CcceEEEEEEE-cCCHHHHHHHHhCcchhhhhHHhhhheeeeee
Confidence 4444443 36999999 8999999994 55 77899999999 69999999999999999999999999999997
Q ss_pred ecCCCcEEEEEEEeeceee--cCceEEEEEEEEeeCCEEEEEEeccCCCCCCCCC-CcEEEEEeeeEEEEEEeecCCCCC
Q 014046 217 CPNTGTMVVQWVRKFPFFC--SDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRN-KPKRVDLFYSSWYIRAVESRRGDG 293 (432)
Q Consensus 217 ~~~~gt~IvY~v~K~P~Pv--SdRDyV~~Rri~~~d~~~~ivskSV~hp~~P~~~-g~VRV~~~~SgwvIrpl~s~~~~G 293 (432)
.+ +++.|+|++...|||+ ++||||..+.+...++.+++..+|++||.+|+.+ ||||++.+.++|.|+|++.+. +|
T Consensus 86 ~~-~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g-~~ 163 (205)
T cd08874 86 FT-EDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEG-NQ 163 (205)
T ss_pred cC-CCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCC-CC
Confidence 65 4568999999999988 9999999987666777777889999999999996 999999999999999995432 33
Q ss_pred ccccEEEEEEEEecCC---CCHHHHHHhHhhhHHH
Q 014046 294 QLTACEVILFHHEDMG---IPWEIAKLGVRQGMWG 325 (432)
Q Consensus 294 ~~~aCeVt~~~~~DPG---IP~~LvN~~v~~g~~~ 325 (432)
.|+++|+.|.||| ||+|++|.++..++..
T Consensus 164 ---~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~ 195 (205)
T cd08874 164 ---YTRVIYIAQVALCGPDVPAQLLSSLSKRQPLV 195 (205)
T ss_pred ---cEEEEEEEEECCCCCCCCHHHHhHHHHhccHH
Confidence 4899999999993 9999999999986543
No 15
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.97 E-value=4.5e-29 Score=231.59 Aligned_cols=192 Identities=23% Similarity=0.350 Sum_probs=157.9
Q ss_pred HHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEeCCC-C-CCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcce
Q 014046 133 DLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPE-N-GPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIY 210 (432)
Q Consensus 133 Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR~p~-s-Gl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e 210 (432)
....++++..+.. .+|++.+++. ..++..++..+. + ++..||+.+++ ++++++++..++|... +||+++.+
T Consensus 6 ~~~~~~~~~~~~~--~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~v-~~~~~~~~~~~~~~~~--~Wd~~~~~ 78 (206)
T PF01852_consen 6 LMQEELALAQEDE--DGWKLYKDKK--NGDVYYKKVSPSDSCPIKMFKAEGVV-PASPEQVVEDLLDDRE--QWDKMCVE 78 (206)
T ss_dssp HHHHHHHHHHHTC--TTCEEEEEET--TTCEEEEEEECSSSTSCEEEEEEEEE-SSCHHHHHHHHHCGGG--HHSTTEEE
T ss_pred HHHHHHHHhhcCC--CCCeEeEccC--CCeEEEEEeCccccccceEEEEEEEE-cCChHHHHHHHHhhHh--hcccchhh
Confidence 3444555554433 3699999521 333443333343 3 78899999999 4888877777766655 99999999
Q ss_pred eeEeeeecCCCcEEEEEEEeece--eecCceEEEEEEEEe-eCCEEEEEEeccCCCCCCC-CCCcEEEEEeeeEEEEEEe
Q 014046 211 ASTLEECPNTGTMVVQWVRKFPF--FCSDREYIIGRRIWE-SGRSYYCVTKGVPYTSVPR-RNKPKRVDLFYSSWYIRAV 286 (432)
Q Consensus 211 ~~vLE~~~~~gt~IvY~v~K~P~--PvSdRDyV~~Rri~~-~d~~~~ivskSV~hp~~P~-~~g~VRV~~~~SgwvIrpl 286 (432)
.++||.++ +++.|+|+..++|| |+++||||+.|.+.. .++.++++.+|++||.+|+ .+|+||++.+.|||+|+|+
T Consensus 79 ~~~le~~~-~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 79 AEVLEQID-EDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL 157 (206)
T ss_dssp EEEEEEEE-TTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE
T ss_pred heeeeecC-CCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEc
Confidence 99999876 56899999999999 999999999998877 7889999999999999999 9999999999999999999
Q ss_pred ecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Q 014046 287 ESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAYVK 339 (432)
Q Consensus 287 ~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY~~ 339 (432)
++ | .|+|+|+.|.|| | ||+|++|.++.+++++++++|++++++|.+
T Consensus 158 ~~----~---~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 158 GD----G---RTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp TT----C---EEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cC----C---CceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 74 2 389999999999 5 999999999999999999999999998753
No 16
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=3e-29 Score=235.81 Aligned_cols=182 Identities=21% Similarity=0.218 Sum_probs=154.9
Q ss_pred HHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCC-CCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhccee
Q 014046 134 LEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPE-NGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYA 211 (432)
Q Consensus 134 l~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~-sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~ 211 (432)
.++|++...+ ..++|++..+ +++++||.| .++ +++..||++++++ ++++++++++.| .|++||+++.++
T Consensus 7 ~~~ll~~~~~--~~~~W~~~~~----~~gi~I~~k~~~~~~~l~~~K~~~~v~-a~~~~v~~~l~d--~r~~Wd~~~~~~ 77 (197)
T cd08869 7 VQDLLREARD--KSKGWVSVSS----SDHVELAFKKVDDGHPLRLWRASTEVE-APPEEVLQRILR--ERHLWDDDLLQW 77 (197)
T ss_pred HHHHHHHHhh--ccCCceEEec----CCcEEEEEEeCCCCCcEEEEEEEEEeC-CCHHHHHHHHHH--HHhccchhhheE
Confidence 4566666554 3457999999 889999999 434 4688999999994 999999998876 589999999999
Q ss_pred eEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe--eCCEEEEEEeccCCC-CCCCCCCcEEEEEeeeEEEEEEeec
Q 014046 212 STLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE--SGRSYYCVTKGVPYT-SVPRRNKPKRVDLFYSSWYIRAVES 288 (432)
Q Consensus 212 ~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~--~d~~~~ivskSV~hp-~~P~~~g~VRV~~~~SgwvIrpl~s 288 (432)
++|++++ ++++|+|++.+.|||+++||||..|.+.. +++.|++..+|++|| .+|+ ||||+..+.+||.|+|++.
T Consensus 78 ~vie~id-~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~ 154 (197)
T cd08869 78 KVVETLD-EDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGS 154 (197)
T ss_pred EEEEEec-CCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCC
Confidence 9999886 46789999999999999999999986553 456799999999995 6777 9999999999999999862
Q ss_pred CCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 289 RRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 289 ~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
| .|+|+|+.|.|| | ||+|++|... +.++.-|++|+.-++
T Consensus 155 ----~---~t~vty~~~~Dp~G~iP~wl~N~~~-~~~~~~~~~l~~~~~ 195 (197)
T cd08869 155 ----G---KSRVTHICRVDLRGRSPEWYNKVYG-HLCARELLRIRDSFR 195 (197)
T ss_pred ----C---CeEEEEEEEECCCCCCCceeecchH-hHHHHHHHHHHhhcc
Confidence 2 389999999999 6 9999988877 778899999987654
No 17
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=2.2e-29 Score=243.22 Aligned_cols=188 Identities=14% Similarity=0.240 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEeCCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhc
Q 014046 129 VTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDML 208 (432)
Q Consensus 129 vtd~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl 208 (432)
++-.-.+.|....+ .++|++..+ ++||+||+|. ++++..||+++.+ |+|++++++++.|.++|++||.++
T Consensus 41 ~~~~~~~~~~~~a~----~~~W~l~~d----kdgIkVytr~-~s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 41 LSDSNVEALKKLAA----KSGWEVTST----VEKIKIYTLE-EHDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred EeeCCHHHhhhhcc----cCCCEEEEc----cCCEEEEEec-CCCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHhh
Confidence 34444455554442 346999999 8999999995 6778899999999 799999999999999999999999
Q ss_pred ceeeEeeeecCCCcEEEEEEEeece-eecCceEEEEEEEE--e-eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEE
Q 014046 209 IYASTLEECPNTGTMVVQWVRKFPF-FCSDREYIIGRRIW--E-SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIR 284 (432)
Q Consensus 209 ~e~~vLE~~~~~gt~IvY~v~K~P~-PvSdRDyV~~Rri~--~-~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIr 284 (432)
.++++|++.+.+ +. +|++++.|| |++|||||+.+.++ . +++.|+|..+|++||.+|+++||||++.+.+||.|+
T Consensus 111 ~e~~vI~qld~~-~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~ 188 (236)
T cd08914 111 LSCEVIDWVSED-DQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIH 188 (236)
T ss_pred ceEEEEEEeCCC-cC-EEEEecCCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEE
Confidence 999999987644 45 677889999 99999999977654 3 334588999999999999999999999999999999
Q ss_pred EeecCCCCCccccEEEEEEEEecCC-CCHHHHHHh-HhhhHHHHHHHHHHHHHHHHH
Q 014046 285 AVESRRGDGQLTACEVILFHHEDMG-IPWEIAKLG-VRQGMWGAVKKFDPALRAYVK 339 (432)
Q Consensus 285 pl~s~~~~G~~~aCeVt~~~~~DPG-IP~~LvN~~-v~~g~~~~lkkL~~alrkY~~ 339 (432)
|+++ | .|+|+|+.|.||| ||.|++|.+ ..++...++ ++|-+|.+
T Consensus 189 pl~~----~---~~~VtY~~~~dPg~lp~~~~n~~~~~~~~~~~~----~~~~~~~~ 234 (236)
T cd08914 189 AIDS----N---SCTVSYFNQISASILPYFAGNLGGWSKSIEETA----ASCIQFLE 234 (236)
T ss_pred EcCC----C---cEEEEEEEEcCCccchheEEecchhhhHHHHHH----HHHHHHHh
Confidence 9863 2 3899999999999 999999987 444455555 56666643
No 18
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=1.5e-29 Score=238.27 Aligned_cols=175 Identities=15% Similarity=0.225 Sum_probs=155.6
Q ss_pred CCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEE-
Q 014046 148 PVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVV- 225 (432)
Q Consensus 148 ~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~Iv- 225 (432)
++|++.++ ++++.||+| .++++.+.||++|+++ ..+++|+|.+.+..+|.+||++++++++||+++ +++.|.
T Consensus 23 ~~Wkl~k~----~~~~~v~~k~~~ef~gkl~R~Egvv~-~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id-~dt~I~~ 96 (202)
T cd08902 23 EEWRVAKK----SKDVTVWRKPSEEFGGYLYKAQGVVE-DVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFE-ENCCVMR 96 (202)
T ss_pred cCcEEEEe----CCCEEEEEecCCcCCCceEEEEEEec-CCHHHHHHHHhcccchhcccchhhheeHhhhhc-CCcEEEE
Confidence 47999999 799999999 8899999999999995 899999999999999999999999999999986 468887
Q ss_pred EEEEeece-eecCceEEEEEEEEeeCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEE
Q 014046 226 QWVRKFPF-FCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFH 304 (432)
Q Consensus 226 Y~v~K~P~-PvSdRDyV~~Rri~~~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~ 304 (432)
|...+.|+ .+|+||||..|++.+.++.++.++.|++|+..|+ ||||++++++||+++|+++++ +.|.++++.
T Consensus 97 yvt~~~~~~iISpRDFVdv~~~~~~~d~~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p-----~k~~~t~~l 169 (202)
T cd08902 97 YTTAGQLLNIISPREFVDFSYTTQYEDGLLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNP-----SHSLLTGYI 169 (202)
T ss_pred EEcccCCcCccCccceEEEEEEEEeCCCeEEEEeeecCCCCCC--CeEeecccccEEEEEECCCCC-----CceEEEEEE
Confidence 54455555 6799999999988765555677799999998887 999999999999999999654 358999999
Q ss_pred EecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 305 HEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 305 ~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
+.|+ | ||++++|.++.++|.+|+.+|+++++
T Consensus 170 q~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~~ 202 (202)
T cd08902 170 QTDLRGMLPQSAVDTAMASTLVNFYSDLKKALK 202 (202)
T ss_pred EecCCCCccHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999 7 99999999999999999999988763
No 19
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.97 E-value=1.5e-28 Score=222.81 Aligned_cols=184 Identities=24% Similarity=0.378 Sum_probs=160.9
Q ss_pred HHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceee
Q 014046 134 LEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYAS 212 (432)
Q Consensus 134 l~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~ 212 (432)
...++++.+.. .+|++..+ ++++++|+| .+++++..+|+.++++ +|++++++++.|.+.|++||+.+.+.+
T Consensus 4 ~~~~~~~~~~~---~~W~~~~~----~~~v~vy~~~~~~~~~~~~k~~~~i~-~~~~~v~~~l~d~~~~~~w~~~~~~~~ 75 (193)
T cd00177 4 IEELLELLEEP---EGWKLVKE----KDGVKIYTKPYEDSGLKLLKAEGVIP-ASPEQVFELLMDIDLRKKWDKNFEEFE 75 (193)
T ss_pred HHHHhhccccC---CCeEEEEE----CCcEEEEEecCCCCCceeEEEEEEEC-CCHHHHHHHHhCCchhhchhhcceEEE
Confidence 34445554333 46999999 789999999 5557889999999995 799999999999999999999999999
Q ss_pred EeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeC-CEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCC
Q 014046 213 TLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESG-RSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRG 291 (432)
Q Consensus 213 vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d-~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~ 291 (432)
+|+..+ ++..++|++.+.|||+++||||+.+.+...+ +.++++.+|++|+.+|+.+++||++.+.++|+|+|+++
T Consensus 76 vl~~~~-~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~--- 151 (193)
T cd00177 76 VIEEID-EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP--- 151 (193)
T ss_pred EEEEeC-CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC---
Confidence 999875 4578999999999999999999998766544 88999999999999999999999999999999999942
Q ss_pred CCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHH
Q 014046 292 DGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPA 333 (432)
Q Consensus 292 ~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~a 333 (432)
| .|+++|+.|.|| | ||.|++|.++...+..+++.++..
T Consensus 152 -~---~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 152 -G---KTKVTYVLQVDPKGSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred -C---CEEEEEEEeeCCCCCccHHHHHhhhhhccHHHHHHHHHh
Confidence 2 489999999999 5 999999999999999999877554
No 20
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=1.4e-28 Score=233.02 Aligned_cols=187 Identities=13% Similarity=0.173 Sum_probs=162.7
Q ss_pred HHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceee
Q 014046 134 LEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYAS 212 (432)
Q Consensus 134 l~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~ 212 (432)
++++++.+++ .++|++.++ ++++++|.| .+++++..+|++|++ +++++.+++++.|.+++++|++.+.+.+
T Consensus 11 ~~~~~~~l~~---~~~W~~~~~----~~~i~v~~r~~~~~~~~~~k~e~~i-~~~~~~~~~vl~d~~~~~~W~p~~~~~~ 82 (215)
T cd08877 11 MQENLKDLDE---SDGWTLQKE----SEGIRVYYKFEPDGSLLSLRMEGEI-DGPLFNLLALLNEVELYKTWVPFCIRSK 82 (215)
T ss_pred HHHHHhcccC---CCCcEEecc----CCCeEEEEEeCCCCCEEEEEEEEEe-cCChhHeEEEEehhhhHhhhcccceeeE
Confidence 4555555544 346999999 899999999 666668999999999 5899999999999999999999999999
Q ss_pred EeeeecCCCcEEEEEEEeeceeecCceEEEE-EEEE--eeCCEEEEEEeccCCCC---------CCCCC-CcEEEEEeee
Q 014046 213 TLEECPNTGTMVVQWVRKFPFFCSDREYIIG-RRIW--ESGRSYYCVTKGVPYTS---------VPRRN-KPKRVDLFYS 279 (432)
Q Consensus 213 vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~-Rri~--~~d~~~~ivskSV~hp~---------~P~~~-g~VRV~~~~S 279 (432)
.|+..+ ..+.++|+..++|||+++||+|+. +.+. ++++.+++..+|++|+. +|+.+ |+||++...+
T Consensus 83 ~l~~~~-~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~ 161 (215)
T cd08877 83 KVKQLG-RADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYY 161 (215)
T ss_pred EEeecC-CceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecc
Confidence 998765 457899999999999999999975 3222 26778999999999875 79998 9999999999
Q ss_pred EEEEEEeecCCCCCccccEEEEEEEEecCC---CCHHHHHHhHhhhHHHHHHHHHHHHHH
Q 014046 280 SWYIRAVESRRGDGQLTACEVILFHHEDMG---IPWEIAKLGVRQGMWGAVKKFDPALRA 336 (432)
Q Consensus 280 gwvIrpl~s~~~~G~~~aCeVt~~~~~DPG---IP~~LvN~~v~~g~~~~lkkL~~alrk 336 (432)
+|.|+|++. | .|.++|+.|.||| ||.|++|+++++.++.++.+|++++++
T Consensus 162 ~~~i~p~~~----~---~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 162 GFVITPISP----T---KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred eEEEEEcCC----C---CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999973 2 3899999999994 999999999999999999999999875
No 21
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.96 E-value=9.4e-29 Score=239.83 Aligned_cols=181 Identities=12% Similarity=0.210 Sum_probs=151.0
Q ss_pred HHHHHhcCCCCCCceEEEccCCCCCcEEEEEeCCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeee
Q 014046 137 LCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEE 216 (432)
Q Consensus 137 ~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~ 216 (432)
.++++...+ +|++..+ ++||+||++.. +....||+++++ +++++++++++.|.++|++||.++.++++|++
T Consensus 51 ~l~~l~~~~---~W~l~~~----~~gI~Vyt~~~-s~~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~ 121 (240)
T cd08913 51 ALKMLVAKD---NWVLSSE----KNQVRLYTLEE-DKFLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQ 121 (240)
T ss_pred HHHhhcccC---CCEEEEc----cCCEEEEEEeC-CCccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhhccEEEEEEe
Confidence 355554433 5999999 89999999743 445699999999 69999999999999999999999999999998
Q ss_pred ecCCCcEEEEEEEeece--eecCceEEEEEEEEe---eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCC
Q 014046 217 CPNTGTMVVQWVRKFPF--FCSDREYIIGRRIWE---SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRG 291 (432)
Q Consensus 217 ~~~~gt~IvY~v~K~P~--PvSdRDyV~~Rri~~---~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~ 291 (432)
++.+ + .+|++...|| |++|||||..+++.. +++.|++..+++.||++|+++||||++...++|+|+|.++
T Consensus 122 id~~-~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~--- 196 (240)
T cd08913 122 VDED-D-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESD--- 196 (240)
T ss_pred cCCC-c-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCC---
Confidence 7643 3 4688888887 999999999876654 3456889999999999999999999999999999999753
Q ss_pred CCccccEEEEEEEEecCC-CCHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q 014046 292 DGQLTACEVILFHHEDMG-IPWEIAKLGVRQGMWGAVKKFDPALRAYV 338 (432)
Q Consensus 292 ~G~~~aCeVt~~~~~DPG-IP~~LvN~~v~~g~~~~lkkL~~alrkY~ 338 (432)
| .|+++|+.|.||| ||.|++|.++..++..-- -++|-+|.
T Consensus 197 -~---~t~vtY~~~~dPG~LP~~~~N~~~~~~p~~~~---~~~~~~~~ 237 (240)
T cd08913 197 -Q---LTKVSYYNQATPGVLPYISTDIAGLSSEFYST---FSACSQFL 237 (240)
T ss_pred -C---cEEEEEEEEeCCccccHHHhhhhhhccchhHH---HHHHHHHh
Confidence 3 3899999999999 999999999988776532 24555553
No 22
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=3.2e-28 Score=225.36 Aligned_cols=173 Identities=15% Similarity=0.226 Sum_probs=155.1
Q ss_pred CCceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEE
Q 014046 148 PVWIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQ 226 (432)
Q Consensus 148 ~~We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY 226 (432)
.+|+++++ ++++++|+| .++++...||++++++ ++|+++++++.|.++|++||+.+.++++||..+ +++.+.|
T Consensus 17 ~~W~~~~~----~~~v~v~~~~~~~~~~~~~k~~~~i~-~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~-~~~~i~~ 90 (195)
T cd08876 17 GDWQLVKD----KDGIKVYTRDVEGSPLKEFKAVAEVD-ASIEAFLALLRDTESYPQWMPNCKESRVLKRTD-DNERSVY 90 (195)
T ss_pred CCCEEEec----CCCeEEEEEECCCCCeEEEEEEEEEe-CCHHHHHHHHhhhHhHHHHHhhcceEEEeecCC-CCcEEEE
Confidence 36999999 899999999 6667778999999995 899999999999999999999999999999764 4578999
Q ss_pred EEEeeceeecCceEEEEEEEEee--CCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEE
Q 014046 227 WVRKFPFFCSDREYIIGRRIWES--GRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFH 304 (432)
Q Consensus 227 ~v~K~P~PvSdRDyV~~Rri~~~--d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~ 304 (432)
...++|||+++||||+.+++... ++.+++...+++|+ +|++++|||+..+.++|.|+|++. | .|+|+|..
T Consensus 91 ~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~----~---~t~vt~~~ 162 (195)
T cd08876 91 TVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN----G---KTRVTYQA 162 (195)
T ss_pred EEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC----C---eEEEEEEE
Confidence 99999999999999998766543 57788888888888 899999999999999999999862 2 48999999
Q ss_pred EecC-C-CCHHHHHHhHhhhHHHHHHHHHHHH
Q 014046 305 HEDM-G-IPWEIAKLGVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 305 ~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~al 334 (432)
+.|| | ||.|++|.++++.+++++++|++.+
T Consensus 163 ~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 163 YADPGGSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 5 9999999999999999999998876
No 23
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.96 E-value=1.6e-28 Score=237.41 Aligned_cols=189 Identities=12% Similarity=0.166 Sum_probs=156.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEeCCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHh
Q 014046 128 FVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDM 207 (432)
Q Consensus 128 ~vtd~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~t 207 (432)
.++...++.|..+.+ .++|++..+ ++||+||+|. +++...||+++++ +++++++++++.|.++|++||.+
T Consensus 39 ~~~~~~~~~l~~l~~----~~~W~l~~~----k~gIkVytr~-~s~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 39 YLSYGNVTALKRLAA----KSDWTVASS----TTSVTLYTLE-QDGVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred EEeeCCHHHHhhccc----cCCCEEEEc----CCCEEEEEec-CCCceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 466777777777763 236999999 8999999997 5778899999999 69999999999999999999999
Q ss_pred cceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe---eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEE
Q 014046 208 LIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE---SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIR 284 (432)
Q Consensus 208 l~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~---~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIr 284 (432)
+.++++|++++ +.+.++|+..++|||++|||||..+.+.. +++.|+|..+|++|+.+|+++||||++...+||.|+
T Consensus 109 ~~e~evI~~id-~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~ 187 (235)
T cd08873 109 GRSCEEVKRVG-EDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIR 187 (235)
T ss_pred ccEEEEEEEeC-CCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEE
Confidence 99999999876 34678999999999999999999877653 335688999999999999999999999999999999
Q ss_pred EeecCCCCCccccEEEEEEEEecCC-CCHHHHHHh-HhhhHHHHHHHHHHHHHHHH
Q 014046 285 AVESRRGDGQLTACEVILFHHEDMG-IPWEIAKLG-VRQGMWGAVKKFDPALRAYV 338 (432)
Q Consensus 285 pl~s~~~~G~~~aCeVt~~~~~DPG-IP~~LvN~~-v~~g~~~~lkkL~~alrkY~ 338 (432)
|+++ | .|+|+|+.|.||| +|----|.+ ..+....++ .+|.+|.
T Consensus 188 p~~~----~---~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 232 (235)
T cd08873 188 QDCG----T---CTEVSYYNETNPKLLSYVTCNLAGLSALYCRTF----HCCEQFL 232 (235)
T ss_pred ECCC----C---cEEEEEEEEcCCCccceeeecchhhhHHHHHHH----HHHHHHh
Confidence 9862 2 3899999999999 664434433 333344444 5555554
No 24
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=9.8e-26 Score=212.96 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEeCCCC--CCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcc
Q 014046 132 DDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPEN--GPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLI 209 (432)
Q Consensus 132 ~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR~p~s--Gl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~ 209 (432)
+..+.|++..-++ ..+|....+ .++++||.|+.++ .+...|+.+.|++.+++.+.+++.| |..||.+|.
T Consensus 13 ~~~~~~lre~~ek--~kgW~~~~~----~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~ 83 (205)
T cd08907 13 DNVQCLLREASER--FKGWHSAPG----PDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLL 83 (205)
T ss_pred HHHHHHHHHhhhc--cCCceeecC----CCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHH
Confidence 3445555554343 346999988 7899999995554 4789999999999999999999999 999999999
Q ss_pred eeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe--eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEee
Q 014046 210 YASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE--SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVE 287 (432)
Q Consensus 210 e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~--~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~ 287 (432)
+.++||.++ ++++|+||+.+.|.|+.+||||..|.|+. ..+.++|++.||+|+.+|+.+| ||+..+.+||.|+|.+
T Consensus 84 e~~~Ie~Ld-~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g 161 (205)
T cd08907 84 HSQVIEALE-NNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCG 161 (205)
T ss_pred hhhhheeec-CCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECC
Confidence 999999986 57899999999999999999999998752 2346999999999999999999 9999999999999986
Q ss_pred cCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHH
Q 014046 288 SRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 288 s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~al 334 (432)
. | .|+++|+.+.|| | +|.|. |.+..+.+-..+.+|+..+
T Consensus 162 ~----g---~s~ltyi~rvD~rG~~P~Wy-nk~~g~~~a~~l~~ir~sF 202 (205)
T cd08907 162 M----G---RSRLTHICRADLRGRSPDWY-NKVFGHLCAMEVARIRDSF 202 (205)
T ss_pred C----C---CeEEEEEEEeCCCCCCcHHH-HHhHHHHHHHHHHHHHhhc
Confidence 3 2 389999999999 8 99999 9999998888888887654
No 25
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=4.9e-25 Score=209.25 Aligned_cols=183 Identities=18% Similarity=0.205 Sum_probs=148.9
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe--CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcc
Q 014046 132 DDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR--DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLI 209 (432)
Q Consensus 132 ~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR--~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~ 209 (432)
+-+++++++..++-. +|..+.. .+++.+..+ .+++++..+|++++++ ++++++++.+.|. |.+||..+.
T Consensus 13 ~~~~~l~~e~~~k~k--~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~-a~~~~vl~~lld~--~~~Wd~~~~ 83 (204)
T cd08908 13 DCVDGLFKEVKEKFK--GWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVP-AAPEEILKRLLKE--QHLWDVDLL 83 (204)
T ss_pred HHHHHHHHHHHHHhc--CCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeC-CCHHHHHHHHHhh--HHHHHHHhh
Confidence 345556666554433 5877765 666777666 4556789999999995 8999999999888 999999999
Q ss_pred eeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe--eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEee
Q 014046 210 YASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE--SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVE 287 (432)
Q Consensus 210 e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~--~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~ 287 (432)
+.++||+.+ ++++|+|++.+.|||+++||||..|.+.. .++.+++.++|++|+.+|++ +||+..+.++|.|+|.+
T Consensus 84 e~~vIe~ld-~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g 160 (204)
T cd08908 84 DSKVIEILD-SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCG 160 (204)
T ss_pred heEeeEecC-CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECC
Confidence 999999876 46789999999999999999999987653 46778999999999999966 79999999999999986
Q ss_pred cCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHH
Q 014046 288 SRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 288 s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~al 334 (432)
+ | .|+++|+.|.|| | ||.|++|.+-. .+-..+.+|+..+
T Consensus 161 ~----g---~t~vtyi~~~DPgG~iP~W~~N~~g~-~~~~~~~~~r~sf 201 (204)
T cd08908 161 S----G---KSKLTYMCRIDLRGHMPEWYTKSFGH-LCAAEVVKIRDSF 201 (204)
T ss_pred C----C---cEEEEEEEEeCCCCCCcHHHHhhHHH-HHHHHHHHHHhhc
Confidence 3 3 389999999999 5 99999998754 3556666665544
No 26
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.93 E-value=6.2e-24 Score=201.82 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=140.2
Q ss_pred CceEEEccCCCCCcEEEEEe--CCCCCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEE
Q 014046 149 VWIQMMDRSTPTMAYQAWRR--DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQ 226 (432)
Q Consensus 149 ~We~v~dk~~~~~gikVwrR--~p~sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY 226 (432)
+|..+.. .++..++.+ .+++++..+|+.+.++ ++|++|++.+.+ .|.+||.++.+.++||.++ .+++|+|
T Consensus 28 ~w~~~~~----~~~~e~~ykK~~d~~~lk~~r~~~ei~-~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld-~~tdi~~ 99 (205)
T cd08909 28 GWISCSS----SDNTELAYKKVGDGNPLRLWKVSVEVE-APPSVVLNRVLR--ERHLWDEDFLQWKVVETLD-KQTEVYQ 99 (205)
T ss_pred CCcccCC----cCCeEEEEecCCCCCceEEEEEEEEeC-CCHHHHHHHHHh--hHhhHHhhcceeEEEEEeC-CCcEEEE
Confidence 5777665 566666555 4557899999999996 788888887766 6999999999999999986 4589999
Q ss_pred EEEeeceeecCceEEEEEEEEe--eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEE
Q 014046 227 WVRKFPFFCSDREYIIGRRIWE--SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFH 304 (432)
Q Consensus 227 ~v~K~P~PvSdRDyV~~Rri~~--~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~ 304 (432)
+..+.|+|+++||||..|++.. .+++|+++++|++|+.+|+. |+||+..+.+||.|+|.++ | .|+|+|+.
T Consensus 100 y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~----g---~trvt~i~ 171 (205)
T cd08909 100 YVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGS----G---KSRLTHIC 171 (205)
T ss_pred EEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCC----C---CEEEEEEE
Confidence 9999999999999999998753 46789999999999999985 9999999999999999973 3 38999999
Q ss_pred EecC-C-CCHHHHHHhHhhhHHHHHHHHHHHH
Q 014046 305 HEDM-G-IPWEIAKLGVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 305 ~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~al 334 (432)
+.|| | +|.|++|..- +.+-..+.+|+..+
T Consensus 172 ~vDpkG~~P~W~~n~~g-~~~~~~~~~~r~sf 202 (205)
T cd08909 172 RVDLKGHSPEWYNKGFG-HLCAAEAARIRNSF 202 (205)
T ss_pred EecCCCCChHHHHHhHH-HHHHHHHHHHHhhc
Confidence 9999 6 9999999764 34555666665543
No 27
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=99.92 E-value=4.7e-24 Score=229.74 Aligned_cols=198 Identities=17% Similarity=0.216 Sum_probs=165.9
Q ss_pred CCCceEEEccCCCCCcEEEEEeC--CC---CC-CCeEEEEEEEecCCHHHHHHhhcCcc-hhhHHhHhcceeeEeeeecC
Q 014046 147 GPVWIQMMDRSTPTMAYQAWRRD--PE---NG-PPQYRSRTVYEDVTPEMVRDFFWDDD-SRLKWDDMLIYASTLEECPN 219 (432)
Q Consensus 147 ~~~We~v~dk~~~~~gikVwrR~--p~---sG-l~~YKa~~v~edaspe~V~d~~~D~e-~R~kWD~tl~e~~vLE~~~~ 219 (432)
...|+++.- .||.+++..- .+ .+ .+.+|++|++ +++||+|++++++.+ .|.+||.++.++++||+++
T Consensus 197 ~~~Wr~~~c----~NGlRiF~e~~~~~~~~~~~~~~mKavGVV-~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID- 270 (719)
T PLN00188 197 RKHWRLLQC----QNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVD- 270 (719)
T ss_pred cCCeEEEEe----eccceeehhhhccccccccCCceeEEEEEe-cCCHHHHHHHHhccCcccccchhcccceEEEEEec-
Confidence 457999998 8999999882 22 11 3689999999 599999999998755 9999999999999999986
Q ss_pred CCcEEEEEEEe---eceeecCceEEEEEEEEe-eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCcc
Q 014046 220 TGTMVVQWVRK---FPFFCSDREYIIGRRIWE-SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQL 295 (432)
Q Consensus 220 ~gt~IvY~v~K---~P~PvSdRDyV~~Rri~~-~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~ 295 (432)
.+++|+|.+.+ +|+.+++||||+.|+|.+ +|++|+|+.+|+.||.+|+++||||++++.+||+|.|++.++ |.
T Consensus 271 ~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~--g~- 347 (719)
T PLN00188 271 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRN--GR- 347 (719)
T ss_pred CCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCC--CC-
Confidence 56899999988 455889999999998775 577899999999999999999999999999999999998754 33
Q ss_pred ccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHhH
Q 014046 296 TACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLSRCAYMAQ 355 (432)
Q Consensus 296 ~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY~~~r~~~~~~s~~~~m~~ 355 (432)
+.|.|+++.|.|+ | +|.+.- ...++.....|..+ +|+|+|..++....+.+|++.|++
T Consensus 348 ~r~lv~~~lqtDlkGW~~~y~~-s~~~~~~l~mL~~V-AgLrE~~~~~~~~~~~~~~~~~~~ 407 (719)
T PLN00188 348 PRTQVQHLMQIDLKGWGVGYIP-SFQQHCLLQMLNSV-AGLREWFSQTDERGAPPRIPVMVN 407 (719)
T ss_pred CceEEEEEEEEccCccccccCc-cccccchHHHHHHH-HHHHHHHhcCcccCccccceeecc
Confidence 5799999999999 7 988755 34445455555444 889999988888778888877754
No 28
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.77 E-value=1.9e-18 Score=178.15 Aligned_cols=194 Identities=20% Similarity=0.334 Sum_probs=164.3
Q ss_pred CCCCceEEEccCCCCCcEEEEEe-CCCCC--CCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCc
Q 014046 146 GGPVWIQMMDRSTPTMAYQAWRR-DPENG--PPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGT 222 (432)
Q Consensus 146 ~~~~We~v~dk~~~~~gikVwrR-~p~sG--l~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt 222 (432)
+...|+++.+ ...+++|+| ..++| +...|+...+.++|+.+++..|+|.++|.+|+.+++.+.++|.+. ++.
T Consensus 401 ~d~nwqlFae----egemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~is-~d~ 475 (611)
T KOG1739|consen 401 GDANWQLFAE----EGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVETIS-DDA 475 (611)
T ss_pred ccchhhhhcc----cCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeeeec-CCe
Confidence 4446999999 899999999 44566 346899999999999999999999999999999999999999985 567
Q ss_pred EEEEEEEeeceeecCceEEE---EEEEEe----eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCc-
Q 014046 223 MVVQWVRKFPFFCSDREYII---GRRIWE----SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQ- 294 (432)
Q Consensus 223 ~IvY~v~K~P~PvSdRDyV~---~Rri~~----~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~- 294 (432)
.|+|...|--||.|+||-.+ .|++-. +.+.|++++.+++|.+.|.++..||+..-.+..|-.-++...++-.
T Consensus 476 ~~~~qthkrvwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q~l 555 (611)
T KOG1739|consen 476 IIIYQTHKRVWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQEL 555 (611)
T ss_pred EEEEecccccCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCCcc
Confidence 89999999999999999886 355542 3477889999999999999999999999998887765553322110
Q ss_pred ---cccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014046 295 ---LTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKERASGASLS 348 (432)
Q Consensus 295 ---~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~~alrkY~~~r~~~~~~s 348 (432)
...|+++|..+.+|| .|......+.++..|+||+.+ ..|.+.+..|+|++
T Consensus 556 ~rdd~~ckityvs~vnpggwapasalravykreypkflkrf----t~yv~~~~kgkpi~ 610 (611)
T KOG1739|consen 556 SRDDILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKRF----TSYVQEKTKGKPIL 610 (611)
T ss_pred cccceeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHHH----HHHHHHhcCCCCCc
Confidence 136999999999995 999999999999999999655 78888899999864
No 29
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.61 E-value=5.1e-14 Score=134.42 Aligned_cols=163 Identities=17% Similarity=0.093 Sum_probs=113.8
Q ss_pred CCcEEEEEeCCC-C-CCCe-EEEEEEEecC----CHHHHHHhhcC--cchhhHHhHhcc--eeeEeeeecCCCc----EE
Q 014046 160 TMAYQAWRRDPE-N-GPPQ-YRSRTVYEDV----TPEMVRDFFWD--DDSRLKWDDMLI--YASTLEECPNTGT----MV 224 (432)
Q Consensus 160 ~~gikVwrR~p~-s-Gl~~-YKa~~v~eda----spe~V~d~~~D--~e~R~kWD~tl~--e~~vLE~~~~~gt----~I 224 (432)
.-++++|++... . +.-. =|+.+.-.+. +.+++.+.+.+ .++-++|.+.+. +.++|+... ++. .|
T Consensus 15 ~~~v~~y~~~~~~~~~~W~~R~S~H~~~~~~~~~~~~~~~~~l~~~h~~~E~~~i~~v~~~~~~~l~~~~-~~~~~~~~v 93 (208)
T cd08864 15 TIGVQTYSKHIAVKGDFWFARVSVHEDLGFTGKKSYQEFREGLRDTHTEYEKEYVHEIGAYDLEPVEVDG-EGDGVVTYL 93 (208)
T ss_pred CceeEEEecccCCCCceeEEEEeecCCCCchhhhHHHHHHhhhhHhHHhhhhhchhhhccceeEEeeecC-CCccceEEE
Confidence 457888888432 2 2211 1222211112 24444444433 667778999999 889998754 345 78
Q ss_pred EEEEEeeceeecCceEEEEEE-EEeeC--CEEEEEEeccCCCCCC-CCCCcEEEEEeeeEEEEEEeecCCCCCccccEEE
Q 014046 225 VQWVRKFPFFCSDREYIIGRR-IWESG--RSYYCVTKGVPYTSVP-RRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEV 300 (432)
Q Consensus 225 vY~v~K~P~PvSdRDyV~~Rr-i~~~d--~~~~ivskSV~hp~~P-~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeV 300 (432)
+|...++|||+++||||.... .+..+ +.+++++.++.|+.+| +.+++||+. |.|+..|+..+... ++. ..|+.
T Consensus 94 ~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~-~~~-~~vew 170 (208)
T cd08864 94 VQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDAD-GKS-NKVEW 170 (208)
T ss_pred EEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccC-CCc-CCEEE
Confidence 999999999999999998876 45445 7889999999999999 899999999 88887777665321 111 13566
Q ss_pred EEEEEecCC--CCHHHHHHhHhhhHHHH
Q 014046 301 ILFHHEDMG--IPWEIAKLGVRQGMWGA 326 (432)
Q Consensus 301 t~~~~~DPG--IP~~LvN~~v~~g~~~~ 326 (432)
++..+.||| ||.|++|.++.+++-+=
T Consensus 171 ~maT~sDpGG~IP~wl~n~~~p~aI~~D 198 (208)
T cd08864 171 IMATRSDAGGNIPRWLTKLTIPKAIAKD 198 (208)
T ss_pred EEEEeeCCCCcCcHHHHhccCchHHHHh
Confidence 666699995 99999999877655443
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.28 E-value=1.7e-10 Score=111.76 Aligned_cols=194 Identities=15% Similarity=0.187 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCCCCcEEEEEe--CCCC-----C--CCeEEEEEEEecCCHHHHHHhhcCcchh
Q 014046 131 EDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRR--DPEN-----G--PPQYRSRTVYEDVTPEMVRDFFWDDDSR 201 (432)
Q Consensus 131 d~Dl~~~~~~~e~~~~~~~We~v~dk~~~~~gikVwrR--~p~s-----G--l~~YKa~~v~edaspe~V~d~~~D~e~R 201 (432)
.+=+++|+++++.. ..-|....+-....-++.-|-| .... | .-.-|..+.+ ..++..+.+.|+|.+..
T Consensus 9 ~~am~Ell~~a~~~--~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV-~m~~~~lVe~lmD~~kW 85 (229)
T cd08875 9 EEAMDELLKLAQGG--EPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLV-MMNAIKLVEILMDVNKW 85 (229)
T ss_pred HHHHHHHHHHhccC--CCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEE-ecCHHHHHHHHhChhhh
Confidence 45577888888653 3469986652100012222333 1111 2 2357889999 59999999999987644
Q ss_pred hH-HhHhcceeeEeeeecCC------C-cEEEEEEEeeceee-cCceEEEEEEEEe-eCCEEEEEEeccCCC-CCCCCCC
Q 014046 202 LK-WDDMLIYASTLEECPNT------G-TMVVQWVRKFPFFC-SDREYIIGRRIWE-SGRSYYCVTKGVPYT-SVPRRNK 270 (432)
Q Consensus 202 ~k-WD~tl~e~~vLE~~~~~------g-t~IvY~v~K~P~Pv-SdRDyV~~Rri~~-~d~~~~ivskSV~hp-~~P~~~g 270 (432)
.+ .+..+...++++.++.. | .+++|...+.|-|+ ..|||.+.|...+ +++.+.|+.+|+++. ..|..++
T Consensus 86 ~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~ 165 (229)
T cd08875 86 SELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPAS 165 (229)
T ss_pred hhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccCCCCCC
Confidence 44 44489999999887643 2 36899999998865 8999999997765 688899999999988 7888899
Q ss_pred cEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC----C--CCHHHHHHhHhhhHHHHHHHHHHHH
Q 014046 271 PKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM----G--IPWEIAKLGVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 271 ~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP----G--IP~~LvN~~v~~g~~~~lkkL~~al 334 (432)
++|.+-.+|||.|++.++ | .|+|+++-|.|. . +|..+++.+...++-.++..|...|
T Consensus 166 ~~r~~~~PSGcLIq~~~n----G---~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqc 228 (229)
T cd08875 166 FVRCRRLPSGCLIQDMPN----G---YSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQC 228 (229)
T ss_pred ccEEEEecCcEEEEECCC----C---ceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhc
Confidence 999999999999999983 4 389999999995 2 9999999999999999987766544
No 31
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.11 E-value=1.4e-09 Score=94.96 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=104.2
Q ss_pred EEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEEEEE
Q 014046 178 RSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVT 257 (432)
Q Consensus 178 Ka~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ivs 257 (432)
+.+..+ +++++++++++.|.+..++|.+.+.++++++..+ +...+++..++| ..+|+|+...++. .++.+ ..
T Consensus 2 ~~s~~i-~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~i--~~ 73 (138)
T cd07813 2 SKSRLV-PYSAEQMFDLVADVERYPEFLPWCTASRVLERDE--DELEAELTVGFG--GIRESFTSRVTLV-PPESI--EA 73 (138)
T ss_pred eEEEEc-CCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC--CEEEEEEEEeec--cccEEEEEEEEec-CCCEE--EE
Confidence 445677 6999999999999999999999999999998533 345666666655 5699998765543 24432 33
Q ss_pred eccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 258 KGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 258 kSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
.+++. +++.+.+.|.++|+++ | .|+++|..+.+|+ ||.+++|.++.+.+.+.++.+++.|+
T Consensus 74 ~~~~g----------~~~~~~g~w~~~p~~~----~---~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 74 ELVDG----------PFKHLEGEWRFKPLGE----N---ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred EecCC----------ChhhceeEEEEEECCC----C---CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33322 4566789999999873 2 3799999999995 99999999999999999999888876
Q ss_pred H
Q 014046 336 A 336 (432)
Q Consensus 336 k 336 (432)
+
T Consensus 137 ~ 137 (138)
T cd07813 137 Q 137 (138)
T ss_pred h
Confidence 4
No 32
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.92 E-value=1e-07 Score=83.16 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=91.0
Q ss_pred EEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeec-CceEEEEEEEEeeCCEEEEE
Q 014046 178 RSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCS-DREYIIGRRIWESGRSYYCV 256 (432)
Q Consensus 178 Ka~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvS-dRDyV~~Rri~~~d~~~~iv 256 (432)
+++..+ +++|++|++++.|.+..++|++.+.++++|+.. ++...+|+......... -+.-|.. ++.+.+
T Consensus 2 ~~~~~i-~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~------ 71 (144)
T cd08866 2 VARVRV-PAPPETVWAVLTDYDNLAEFIPNLAESRLLERN--GNRVVLEQTGKQGILFFKFEARVVL-ELRERE------ 71 (144)
T ss_pred eEEEEE-CCCHHHHHHHHhChhhHHhhCcCceEEEEEEcC--CCEEEEEEeeeEEEEeeeeeEEEEE-EEEEec------
Confidence 567788 599999999999999999999999999999752 22334554422221100 0001100 111100
Q ss_pred EeccCCCCCCCCCCcEEE-------EEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHH
Q 014046 257 TKGVPYTSVPRRNKPKRV-------DLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAV 327 (432)
Q Consensus 257 skSV~hp~~P~~~g~VRV-------~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~l 327 (432)
..++.+|. +.+.+.|.++|.++. | .|.++|..+.+|+ +|.+++|.++.+.+...+
T Consensus 72 ----------~~~~~i~~~~~~g~~~~~~g~w~~~~~~~~---~---~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l 135 (144)
T cd08866 72 ----------EFPRELDFEMVEGDFKRFEGSWRLEPLADG---G---GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNL 135 (144)
T ss_pred ----------CCCceEEEEEcCCchhceEEEEEEEECCCC---C---eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 01223333 577899999998731 2 3799999999995 999999999999999999
Q ss_pred HHHHHHHH
Q 014046 328 KKFDPALR 335 (432)
Q Consensus 328 kkL~~alr 335 (432)
+.|++.+.
T Consensus 136 ~~lr~~ae 143 (144)
T cd08866 136 LAIRAEAE 143 (144)
T ss_pred HHHHHHHh
Confidence 99987764
No 33
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.88 E-value=1.1e-07 Score=89.52 Aligned_cols=140 Identities=21% Similarity=0.200 Sum_probs=105.9
Q ss_pred cCCHHHHHHhhcC--cchhhHHhHhcceeeEeeeec--------CCCc-EEEEEEEeeceeecCceEEEEEEEEee----
Q 014046 185 DVTPEMVRDFFWD--DDSRLKWDDMLIYASTLEECP--------NTGT-MVVQWVRKFPFFCSDREYIIGRRIWES---- 249 (432)
Q Consensus 185 daspe~V~d~~~D--~e~R~kWD~tl~e~~vLE~~~--------~~gt-~IvY~v~K~P~PvSdRDyV~~Rri~~~---- 249 (432)
+++-+++.+.+.+ .++-++..+.+...+.++..+ .+++ .+.....|||+|+++|||+..--....
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~kfp~pl~~R~F~~Lvit~~~~~~~ 92 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYKFPGPLSPRVFVVLVITADLPSKT 92 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeECCCCCCCcEEEEEEEEeccCccc
Confidence 6889999997765 666777888899999888762 1233 577777899999999999975543322
Q ss_pred ------CCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhh
Q 014046 250 ------GRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQ 321 (432)
Q Consensus 250 ------d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~ 321 (432)
.+.+++++..++|+..|..+++||+ .|.|-=.||.++...++......+=++....||| ||+|+.++++..
T Consensus 93 ~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g-~Y~SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~~~~p~ 171 (184)
T PF11274_consen 93 EDDSTGPREFMVVSIPVDHPDSPPRKGYVRG-QYESVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQEMGTPG 171 (184)
T ss_pred cCCCCCCCeEEEEEEEcCCcccCCCCCCEEE-EEEEEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHhccCcH
Confidence 4789999999999999999999998 4777777888853221111124688999999995 999999997665
Q ss_pred hHHH
Q 014046 322 GMWG 325 (432)
Q Consensus 322 g~~~ 325 (432)
++-+
T Consensus 172 ~Ia~ 175 (184)
T PF11274_consen 172 AIAK 175 (184)
T ss_pred HHHH
Confidence 5443
No 34
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.76 E-value=5.6e-07 Score=77.36 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=93.0
Q ss_pred eEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCc-EEEEEEEeeceeecCceEEEEEEEEeeCCEEE
Q 014046 176 QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGT-MVVQWVRKFPFFCSDREYIIGRRIWESGRSYY 254 (432)
Q Consensus 176 ~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt-~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ 254 (432)
.+.....+ +++|++|++++.|.+...+|.+.+.+.++++..+ ++. ...+.....+ +++. +|+...... .+..
T Consensus 3 ~v~~s~~i-~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~-- 75 (140)
T cd07819 3 KVSREFEI-EAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDN-DGRPEMVRIGVGAY-GIKD-TYALEYTWD-GAGS-- 75 (140)
T ss_pred eEEEEEEE-eCCHHHHHHHHhChhhhhhhCcceEEEEEeccCC-CCCEEEEEEEEeee-eEEE-EEEEEEEEc-CCCc--
Confidence 35567778 6999999999999999999999999988876432 233 2344443333 4433 666433221 2222
Q ss_pred EEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHHHHHHH
Q 014046 255 CVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDP 332 (432)
Q Consensus 255 ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~~ 332 (432)
+..+..+. .+...+.+.|.+.|..+ | |+|+|..+.+++ +|.+++|.+.+.....++++|++
T Consensus 76 i~~~~~~~---------~~~~~~~~~~~~~~~~~----~----t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (140)
T cd07819 76 VSWTLVEG---------EGNRSQEGSYTLTPKGD----G----TRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKK 138 (140)
T ss_pred EEEEEecc---------cceeEEEEEEEEEECCC----C----EEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhh
Confidence 22222211 14556678899999852 3 699999999994 99999999999999999988865
Q ss_pred H
Q 014046 333 A 333 (432)
Q Consensus 333 a 333 (432)
.
T Consensus 139 ~ 139 (140)
T cd07819 139 R 139 (140)
T ss_pred h
Confidence 3
No 35
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.64 E-value=1.9e-06 Score=74.47 Aligned_cols=135 Identities=8% Similarity=-0.069 Sum_probs=94.3
Q ss_pred eEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-e-CCEE
Q 014046 176 QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-S-GRSY 253 (432)
Q Consensus 176 ~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~-d~~~ 253 (432)
+++.+..+ +++|++|++++.|.+...+|.+.+.+.+.++ ++...++...+. ++++.|.-... ++.+ + ++.+
T Consensus 2 ~~~~~~~i-~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~ 74 (144)
T cd05018 2 KISGEFRI-PAPPEEVWAALNDPEVLARCIPGCESLEKIG----PNEYEATVKLKV-GPVKGTFKGKV-ELSDLDPPESY 74 (144)
T ss_pred eeeeEEEe-cCCHHHHHHHhcCHHHHHhhccchhhccccC----CCeEEEEEEEEE-ccEEEEEEEEE-EEEecCCCcEE
Confidence 57788889 6999999999999999999999888876554 244445545554 35555543222 2322 2 2333
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-C----CCHHHHHHhHhhhHHHHHH
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-G----IPWEIAKLGVRQGMWGAVK 328 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-G----IP~~LvN~~v~~g~~~~lk 328 (432)
.+...+. .+ .+...+...|.++|.+ +| |+|+|..+.++ | +|.+++|.++++.+..|++
T Consensus 75 ~~~~~~~-~~--------~~~~~~~~~~~l~~~~----~g----T~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~ 137 (144)
T cd05018 75 TITGEGK-GG--------AGFVKGTARVTLEPDG----GG----TRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFE 137 (144)
T ss_pred EEEEEEc-CC--------CceEEEEEEEEEEecC----Cc----EEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHH
Confidence 3332221 11 3345678899999873 22 69999999998 4 5999999999999999999
Q ss_pred HHHHHH
Q 014046 329 KFDPAL 334 (432)
Q Consensus 329 kL~~al 334 (432)
+|++.+
T Consensus 138 ~l~~~~ 143 (144)
T cd05018 138 NLASKI 143 (144)
T ss_pred HHHHhh
Confidence 998764
No 36
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.21 E-value=7.8e-05 Score=63.98 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=88.7
Q ss_pred cCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEEEEEeccCCCC
Q 014046 185 DVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKGVPYTS 264 (432)
Q Consensus 185 daspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ivskSV~hp~ 264 (432)
++++++|++++.|.+..++|.+.+.+.++|+... +...+++... +....+.|........... +..+-.
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~---- 70 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPVKEVRVLERDG--DGMRARWEVK--FGGIKRSWTSRVTEDPPER---IRFEQI---- 70 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEEC--CEEEEEEEEC--TTTTCEEEEEEEEEECTTT---EEEESS----
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCC--CeEEEEEEEe--cCCEEEEEEEEEEEEEeee---eeeeec----
Confidence 6899999999999999999999999999998643 2333333333 3334556644332222222 222212
Q ss_pred CCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHHHHHH
Q 014046 265 VPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 265 ~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~ 331 (432)
.|. ...+.+.|.++|..+.+ .| +.|.+++.+..+|+ +|..+++.++.+.....+++|+
T Consensus 71 ----~g~--~~~~~g~W~~~~~~~~~-~g--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 71 ----SGP--FKSFEGSWRFEPLGGNE-GG--TRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp ----ETT--EEEEEEEEEEEEETTEC-CE--EEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCC--chhcEEEEEEEECCCCc-CC--CEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 122 56789999999998511 13 36899999999994 9999999999999999988774
No 37
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.02 E-value=0.00029 Score=60.00 Aligned_cols=134 Identities=14% Similarity=0.116 Sum_probs=87.4
Q ss_pred eEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCC-EE
Q 014046 176 QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGR-SY 253 (432)
Q Consensus 176 ~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~-~~ 253 (432)
.++...++ ++|+++|++++.|.+...+|.+.+.+.+.++..+..|.. .. ..++.. +.+ .-++.. ++. ..
T Consensus 2 ~i~~~~~i-~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~-~~--~~~~~g---~~~--~~~i~~~~~~~~~ 72 (140)
T cd07821 2 KVTVSVTI-DAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAV-RT--VTLKDG---GTV--RERLLALDDAERR 72 (140)
T ss_pred cEEEEEEE-CCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeE-EE--EEeCCC---CEE--EEEehhcCccCCE
Confidence 46778889 699999999999999999999988887766532111332 11 122211 222 112221 221 22
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHH
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~ 331 (432)
+.. +...- ..++..+.+.|.+.|.++ | .|+|++.++-++ | +|.++++.++...+-..|++|+
T Consensus 73 i~~-~~~~~--------~~~~~~~~~~~~~~~~~~----~---~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 136 (140)
T cd07821 73 YSY-RIVEG--------PLPVKNYVATIRVTPEGD----G---GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALK 136 (140)
T ss_pred EEE-EecCC--------CCCcccceEEEEEEECCC----C---ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 211 11110 112345678899999763 2 379999999999 5 9999999999999999999998
Q ss_pred HHH
Q 014046 332 PAL 334 (432)
Q Consensus 332 ~al 334 (432)
+.|
T Consensus 137 ~~~ 139 (140)
T cd07821 137 AAL 139 (140)
T ss_pred Hhh
Confidence 765
No 38
>PRK10724 hypothetical protein; Provisional
Probab=97.98 E-value=0.00028 Score=64.88 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=95.1
Q ss_pred CCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEE
Q 014046 174 PPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSY 253 (432)
Q Consensus 174 l~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~ 253 (432)
...++.+.++ ++|++++++++.|.+.+++|-+.+.+.++++..+ +..+....+.+.. -...|+...++ ..++.
T Consensus 14 M~~i~~~~~v-~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~--~~~~a~l~v~~~g--~~~~f~srv~~-~~~~~- 86 (158)
T PRK10724 14 MPQISRTALV-PYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTP--GQMTAAVDVSKAG--ISKTFTTRNQL-TSNQS- 86 (158)
T ss_pred CCeEEEEEEe-cCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecC--CEEEEEEEEeeCC--ccEEEEEEEEe-cCCCE-
Confidence 4578888899 5999999999999999999999999999998643 2233333444432 24455544333 23332
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHHHHHH
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~lkkL~ 331 (432)
|....++ |. .+...+.|.++|++. | +|+|.+.+..+.+ ++..+++.+.....-+.++.++
T Consensus 87 -I~~~~~~--------Gp--F~~l~g~W~f~p~~~----~---~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 87 -ILMQLVD--------GP--FKKLIGGWKFTPLSQ----E---ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFT 148 (158)
T ss_pred -EEEEecC--------CC--hhhccceEEEEECCC----C---CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223332 22 456889999999973 1 4899999999986 8888888888876666665555
Q ss_pred HHHH
Q 014046 332 PALR 335 (432)
Q Consensus 332 ~alr 335 (432)
+.++
T Consensus 149 ~Ra~ 152 (158)
T PRK10724 149 VRAK 152 (158)
T ss_pred HHHH
Confidence 5544
No 39
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.85 E-value=0.0008 Score=57.72 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=80.7
Q ss_pred EEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEEEEE
Q 014046 178 RSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVT 257 (432)
Q Consensus 178 Ka~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ivs 257 (432)
.....| ++|+++|++++.|.+..++|.+.+.+++.+.. .+ ..+..+.|+ ...++|+.... ..+.+.. +..
T Consensus 3 ~~~i~I-~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~---~~---~~~~~~~~~-g~~~~~~~~v~-~~~~~~~-i~~ 72 (139)
T cd07817 3 EKSITV-NVPVEEVYDFWRDFENLPRFMSHVESVEQLDD---TR---SHWKAKGPA-GLSVEWDAEIT-EQVPNER-IAW 72 (139)
T ss_pred eEEEEe-CCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC---Cc---eEEEEecCC-CCcEEEEEEEe-ccCCCCE-EEE
Confidence 456678 69999999999999999999998888776542 12 234456776 46677765321 1122222 222
Q ss_pred eccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-C-CCH----HHHHHhHhhhHHHHHHHHH
Q 014046 258 KGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-G-IPW----EIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 258 kSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-G-IP~----~LvN~~v~~g~~~~lkkL~ 331 (432)
.....+ . ...+.|.++|.++ | .|+++|..+.++ + ++. .+++.++++.+...|++|+
T Consensus 73 ~~~~~~-~----------~~~~~~~f~~~~~----~---~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 134 (139)
T cd07817 73 RSVEGA-D----------PNAGSVRFRPAPG----R---GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFK 134 (139)
T ss_pred EECCCC-C----------CcceEEEEEECCC----C---CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHH
Confidence 222211 1 2446677887652 1 379999988888 4 666 4456666666666666665
Q ss_pred HH
Q 014046 332 PA 333 (432)
Q Consensus 332 ~a 333 (432)
+.
T Consensus 135 ~~ 136 (139)
T cd07817 135 QL 136 (139)
T ss_pred HH
Confidence 44
No 40
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.41 E-value=0.01 Score=53.63 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=85.5
Q ss_pred EEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEEEEEec
Q 014046 180 RTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYCVTKG 259 (432)
Q Consensus 180 ~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ivskS 259 (432)
+.++ +++|++|++++.|.+..++|.+.+.+.++++..+ .........+++-.--...|+..+.. +.....+..+.
T Consensus 6 si~i-~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~--~~~~~r~~i~~~~~g~~~~w~s~~~~--~~~~~~i~~~~ 80 (146)
T cd08860 6 SIVI-DAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDG--DTVRFRLTMHPDANGTVWSWVSERTL--DPVNRTVRARR 80 (146)
T ss_pred EEEE-cCCHHHHHHHHHhhhhhhhhccceEEEEEEEecC--CeEEEEEEEEeccCCEEEEEEEEEEe--cCCCcEEEEEE
Confidence 4566 6999999999999999999999999999988522 22233333333221112333332221 22223333322
Q ss_pred cCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC--C--CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 260 VPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM--G--IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 260 V~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP--G--IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
. +..| .....+.|.++|+++ | |+|+|.+.-.. | ++..++..++.+.....+..|++.+.
T Consensus 81 ~--~~~p-------~~~m~~~W~f~~~~~----g----T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE 143 (146)
T cd08860 81 V--ETGP-------FAYMNIRWEYTEVPE----G----TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIE 143 (146)
T ss_pred e--cCCC-------cceeeeeEEEEECCC----C----EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhh
Confidence 2 2111 335677899999852 3 68988886653 4 55777888899999999988877664
No 41
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.36 E-value=0.0076 Score=52.29 Aligned_cols=128 Identities=14% Similarity=0.167 Sum_probs=77.4
Q ss_pred EEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEE---EEee-CCEEEE
Q 014046 180 RTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR---IWES-GRSYYC 255 (432)
Q Consensus 180 ~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rr---i~~~-d~~~~i 255 (432)
..++ ++++++|++++.|.+..++|.+. ...+.++.. .+...++. |++..++.++... .... ++.+..
T Consensus 4 s~~i-~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~--~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~i~~ 74 (142)
T cd08861 4 SVTV-AAPAEDVYDLLADAERWPEFLPT-VHVERLELD--GGVERLRM-----WATAFDGSVHTWTSRRVLDPEGRRIVF 74 (142)
T ss_pred EEEE-cCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEc--CCEEEEEE-----EEEcCCCcEEEEEEEEEEcCCCCEEEE
Confidence 4577 69999999999999999999998 677767642 22223331 3333344443221 1111 222211
Q ss_pred EEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CC--HHHHHHhHhhhHHHHHHHHH
Q 014046 256 VTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IP--WEIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 256 vskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP--~~LvN~~v~~g~~~~lkkL~ 331 (432)
..... + -+...+.+.|.++|.+. | .|+|+|....+++ +| ..++..+..+.+...|..|+
T Consensus 75 ~~~~~--~--------~~~~~~~g~w~~~~~~~----~---~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 137 (142)
T cd08861 75 RQEEP--P--------PPVASMSGEWRFEPLGG----G---GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALR 137 (142)
T ss_pred EEeeC--C--------CChhhheeEEEEEECCC----C---cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHH
Confidence 11111 0 13567788999999862 2 3799999999995 43 44556666666666665555
Q ss_pred HH
Q 014046 332 PA 333 (432)
Q Consensus 332 ~a 333 (432)
+.
T Consensus 138 ~~ 139 (142)
T cd08861 138 AA 139 (142)
T ss_pred HH
Confidence 44
No 42
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.02 E-value=0.047 Score=44.59 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=76.0
Q ss_pred EEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-e-CCEEEE
Q 014046 178 RSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-S-GRSYYC 255 (432)
Q Consensus 178 Ka~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~-d~~~~i 255 (432)
+....+ ++++++|++++.|.+...+|.+.+.++++++.. .......+...+. + .+.+....++.. . +..+..
T Consensus 2 ~~~~~i-~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~ 75 (141)
T cd07812 2 EASIEI-PAPPEAVWDLLSDPERWPEWSPGLERVEVLGGG--EGGVGARFVGGRK-G--GRRLTLTSEVTEVDPPRPGRF 75 (141)
T ss_pred cEEEEe-CCCHHHHHHHHhChhhhhhhCcccceEEEcCCC--CccceeEEEEEec-C--CccccceEEEEEecCCCceEE
Confidence 456678 599999999999999999999998888766531 1111111111111 1 122222222221 1 111111
Q ss_pred EEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--C---CHHHHHHhHhhhHHHHHHHH
Q 014046 256 VTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--I---PWEIAKLGVRQGMWGAVKKF 330 (432)
Q Consensus 256 vskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--I---P~~LvN~~v~~g~~~~lkkL 330 (432)
...+..+. ......|.+.+.++ + .|++++.+..++. + +..+++..+...+..+++++
T Consensus 76 ~~~~~~~~-----------~~~~~~~~~~~~~~---~----~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T cd07812 76 RVTGGGGG-----------VDGTGEWRLEPEGD---G----GTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRAL 137 (141)
T ss_pred EEecCCCC-----------cceeEEEEEEECCC---C----cEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHH
Confidence 11111111 46778888888763 1 3689988888884 3 56677777777777777666
Q ss_pred HH
Q 014046 331 DP 332 (432)
Q Consensus 331 ~~ 332 (432)
+.
T Consensus 138 ~~ 139 (141)
T cd07812 138 KA 139 (141)
T ss_pred Hh
Confidence 44
No 43
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.00 E-value=0.055 Score=45.95 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=76.6
Q ss_pred eEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEEE
Q 014046 176 QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYYC 255 (432)
Q Consensus 176 ~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~i 255 (432)
.+..+..+ +++|+++++++.|.+...+|.+.+..++.+.. ++..+ .+....... ..+......++.++..+.
T Consensus 3 ~~~~~~~v-~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~---~~~~~-~~~~~~~g~---~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 3 KVEVSIEV-PAPPEAVWDLLSDPENWPRWWPGVKSVELLSG---GGPGT-ERTVRVAGR---GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEE-SS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEE---CSTEE-EEEEEECSC---SEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEE-CCCHHHHHHHHhChhhhhhhhhceEEEEEccc---cccce-eEEEEeccc---cceeEEEEEecCCCcEEE
Confidence 45667788 59999999999999999999998888876651 23322 122232211 112222112222133332
Q ss_pred EEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC----CCHHHHHHhHhhhHHHHHHHHH
Q 014046 256 VTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG----IPWEIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 256 vskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG----IP~~LvN~~v~~g~~~~lkkL~ 331 (432)
..- + ..+ +..+...|.+.|.+ +| |.|++..+.++| ++.-++...+...+-..+++|+
T Consensus 75 ~~~-~-------~~~---~~~~~~~~~~~~~~----~g----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 135 (139)
T PF10604_consen 75 WRF-V-------PSG---FTNGTGRWRFEPVG----DG----TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLK 135 (139)
T ss_dssp EEE-E-------SSS---SCEEEEEEEEEEET----TT----EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-E-------ecc---eeEEEEEEEEEEcC----CC----EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 222 1 112 22456779899876 23 689998888874 4444555556665666666665
Q ss_pred HHH
Q 014046 332 PAL 334 (432)
Q Consensus 332 ~al 334 (432)
+.+
T Consensus 136 ~~~ 138 (139)
T PF10604_consen 136 RAA 138 (139)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 44
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.74 E-value=0.086 Score=46.58 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=73.5
Q ss_pred eEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeee-ecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEE
Q 014046 176 QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEE-CPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSY 253 (432)
Q Consensus 176 ~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~-~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~ 253 (432)
.|-....+ ++++|+|++++.|.+...+|.+.+.+.++++. .+ .+....+ ..+..- ..+.++.+.-++.+ +....
T Consensus 2 ~~~~~~~i-~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~-~~~g~~~-~~~~~~-~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 2 RFHTVWRI-PAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDE-AGIGARR-RYTWRG-LLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred cceEEEEe-cCCHHHHHHHHhChhhcchhhhceEEEEEccCCCC-CCcceEE-EEEEEe-cCCcEEEEEEEEEeecCCcE
Confidence 35566788 69999999999999999999999888888762 21 1111111 111110 01122322222222 23333
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC---------CCHHHHHHhHhhhHH
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG---------IPWEIAKLGVRQGMW 324 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG---------IP~~LvN~~v~~g~~ 324 (432)
+.+.- ..+ .+ ....|.|+|.+ +| |.|++....+.+ |...+++.+.++.+.
T Consensus 78 ~~~~~--~g~--------~~---~~~~~~~~~~~----~g----t~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 136 (146)
T cd07824 78 LEVRA--SGD--------LE---GVGRWTLAPDG----SG----TVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMR 136 (146)
T ss_pred EEEEE--EEe--------ee---EEEEEEEEEcC----CC----EEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHH
Confidence 33321 111 11 13678888753 23 789988887752 455555555666555
Q ss_pred HHHHHHHH
Q 014046 325 GAVKKFDP 332 (432)
Q Consensus 325 ~~lkkL~~ 332 (432)
+++++|++
T Consensus 137 ~~~~~L~~ 144 (146)
T cd07824 137 AGEKGLAR 144 (146)
T ss_pred hHHHHHHh
Confidence 55555543
No 45
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.64 E-value=0.22 Score=41.99 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=72.7
Q ss_pred EEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecC-CCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEEEEE
Q 014046 179 SRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPN-TGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSYYCV 256 (432)
Q Consensus 179 a~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~-~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~~iv 256 (432)
.+..+ ++|+++|++++.|.+...+|.+.+..++.+...+. .|..+ .+...++ ...+-..-++.+ +.+..+..
T Consensus 3 ~~~~i-~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~-~~~~~~~----g~~~~~~~~v~~~~p~~~~~~ 76 (140)
T cd08865 3 ESIVI-ERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRY-HQVRKFL----GRRIELTYEITEYEPGRRVVF 76 (140)
T ss_pred eEEEE-cCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEE-EEEEEec----CceEEEEEEEEEecCCcEEEE
Confidence 34567 69999999999999999999998877776643211 13332 2232222 111111111221 22322222
Q ss_pred EeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCCC----CHHHHHHhHhhhHHHHHHHHHH
Q 014046 257 TKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGI----PWEIAKLGVRQGMWGAVKKFDP 332 (432)
Q Consensus 257 skSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPGI----P~~LvN~~v~~g~~~~lkkL~~ 332 (432)
. ... +.+ .+...|.+.|.++ | |.+++....+++. ...++...++..+-.++++|++
T Consensus 77 ~-~~~--------~~~---~~~~~~~~~~~~~----~----t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~ 136 (140)
T cd08865 77 R-GSS--------GPF---PYEDTYTFEPVGG----G----TRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKA 136 (140)
T ss_pred E-ecC--------CCc---ceEEEEEEEEcCC----c----eEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1 111 112 2467788888652 3 6898888888862 2345555566666666666554
Q ss_pred HH
Q 014046 333 AL 334 (432)
Q Consensus 333 al 334 (432)
.+
T Consensus 137 ~~ 138 (140)
T cd08865 137 LL 138 (140)
T ss_pred Hh
Confidence 43
No 46
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.33 E-value=0.26 Score=41.79 Aligned_cols=138 Identities=16% Similarity=0.122 Sum_probs=75.3
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEEEE
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSYYC 255 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~~i 255 (432)
+..+.+| ++|+++|++++.|.+...+|...+.+.+... ...|..+.+ ....+- .+.+...-++.+ +.+..+.
T Consensus 2 v~~~~~i-~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~--~~~G~~~~~-~~~~~~---~~~~~~~~~v~~~~p~~~~~ 74 (141)
T cd07822 2 ISTEIEI-NAPPEKVWEVLTDFPSYPEWNPFVRSATGLS--LALGARLRF-VVKLPG---GPPRSFKPRVTEVEPPRRLA 74 (141)
T ss_pred eEEEEEe-cCCHHHHHHHHhccccccccChhheeEeccc--cCCCCEEEE-EEeCCC---CCcEEEEEEEEEEcCCCEeE
Confidence 4566778 6999999999999999999998766544321 234555444 333321 122333222222 2232333
Q ss_pred EEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCCCCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 256 VTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 256 vskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPGIP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
... ...+ -+.......|.+.|.+. | .|++++.. .-.|.+..++-..+...+-+-++++...++
T Consensus 75 ~~~-~~~~--------~~~~~~~~~~~~~~~~~----~---~T~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~ 137 (141)
T cd07822 75 WRG-GLPF--------PGLLDGEHSFELEPLGD----G---GTRFVHRE-TFSGLLAPLVLLGLGRDLRAGFEAMNEALK 137 (141)
T ss_pred EEe-cCCC--------CcEeeEEEEEEEEEcCC----C---cEEEEEee-EEEEEEhHHhhhhhHHHHhHhHHHHHHHHH
Confidence 222 1111 01123446788888642 1 37887653 223655555555566666666666666666
Q ss_pred HHH
Q 014046 336 AYV 338 (432)
Q Consensus 336 kY~ 338 (432)
+|.
T Consensus 138 ~~~ 140 (141)
T cd07822 138 ARA 140 (141)
T ss_pred Hhh
Confidence 553
No 47
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=96.25 E-value=0.34 Score=41.25 Aligned_cols=130 Identities=16% Similarity=0.088 Sum_probs=73.4
Q ss_pred eEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-e-CCEE
Q 014046 176 QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-S-GRSY 253 (432)
Q Consensus 176 ~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~-d~~~ 253 (432)
.+..+..| ++|++.|++++.|.+...+|.+.+..++.+...+..|... ....+. ...+.+ ++.+ + +..+
T Consensus 2 ~~~~~~~i-~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~---~~~~~~---~~~~~~--~i~~~~p~~~~ 72 (138)
T cd08862 2 KFEATIVI-DAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSF---KMKPPG---LVRSTF--TVTELRPGHSF 72 (138)
T ss_pred EEEEEEEE-cCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEE---EEecCC---CCceEE--EEEEecCCCEE
Confidence 35567788 6999999999999999999999888877665321123322 222221 111111 1111 2 2222
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC---CCHHHHHHhHhhhHHHHHHHH
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG---IPWEIAKLGVRQGMWGAVKKF 330 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG---IP~~LvN~~v~~g~~~~lkkL 330 (432)
... +.. + .......|.+.+.++ | .|++++.+..... +...++...+.+++...|++|
T Consensus 73 ~~~--~~~----~-------~~~~~~~~~~~~~~~----~---~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 132 (138)
T cd08862 73 TWT--GPA----P-------GISAVHRHEFEAKPD----G---GVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGL 132 (138)
T ss_pred EEE--ecC----C-------CEEEEEEEEEEEcCC----C---cEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 221 111 1 123346888888652 1 3688866643321 334566666777777777777
Q ss_pred HHHH
Q 014046 331 DPAL 334 (432)
Q Consensus 331 ~~al 334 (432)
++.+
T Consensus 133 k~~~ 136 (138)
T cd08862 133 KAAA 136 (138)
T ss_pred HHHh
Confidence 6644
No 48
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=94.54 E-value=1.2 Score=42.49 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=89.5
Q ss_pred CCeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEE
Q 014046 174 PPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSY 253 (432)
Q Consensus 174 l~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~ 253 (432)
..+.....++ |.++|+|+++-.|.|..+.|.+.+...+++++.. -+|..+.|-.. ++-...++.++-..-
T Consensus 69 ~i~v~~~V~I-~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr------SrW~~~ap~g~---~v~Wea~it~d~~~e 138 (217)
T COG5637 69 PIEVEVQVTI-DKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR------SRWKANAPLGL---EVEWEAEITKDIPGE 138 (217)
T ss_pred ceEEEEEEEe-CChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc------cceeEcCCCCc---eEEEeehhhccCCCc
Confidence 3345556677 7999999999999999999999999998887432 58898988422 222222333322223
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC-CCHHHHHHhHhhhHHHHHHHHHH
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG-IPWEIAKLGVRQGMWGAVKKFDP 332 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG-IP~~LvN~~v~~g~~~~lkkL~~ 332 (432)
.|--.|++-..+ ++.|.||.. +.++ +. |-.+|+ +.|.-|| .=.-++|.++.+.+-+.++.=-.
T Consensus 139 ~I~W~Sl~Ga~v-~NsG~VrF~---------~~pg---~~--t~V~v~-lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~ 202 (217)
T COG5637 139 RIQWESLPGARV-ENSGAVRFY---------DAPG---DS--TEVKVT-LSYRPPGGLLGAVVAKLFGEEPEQQIQDDLE 202 (217)
T ss_pred EEeeecCCCCcC-CCCccEEee---------eCCC---Cc--eEEEEE-EEecCCccHHHHHHHHHhccchHHHHHHHHH
Confidence 455677755444 467888844 3432 21 123444 4455566 77788899988888877753333
Q ss_pred HHHHHHH
Q 014046 333 ALRAYVK 339 (432)
Q Consensus 333 alrkY~~ 339 (432)
-++.|++
T Consensus 203 RFk~~~e 209 (217)
T COG5637 203 RFKEYQE 209 (217)
T ss_pred HHHHHHH
Confidence 3444544
No 49
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.48 E-value=2.1 Score=37.32 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=30.8
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEe
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTL 214 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vL 214 (432)
+..+.+| ++|+++|++++.|.+..++|++.+...+.+
T Consensus 4 ~~~s~~I-~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~ 40 (150)
T cd07818 4 VERSIVI-NAPPEEVFPYVNDLKNWPEWSPWEKLDPDM 40 (150)
T ss_pred EEEEEEE-eCCHHHHHHHHhCcccCcccCchhhcCcce
Confidence 4566778 699999999999999999999977665444
No 50
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.09 E-value=3.2 Score=36.54 Aligned_cols=133 Identities=11% Similarity=-0.020 Sum_probs=71.6
Q ss_pred EEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-e--CCEEEEE
Q 014046 180 RTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-S--GRSYYCV 256 (432)
Q Consensus 180 ~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~--d~~~~iv 256 (432)
+-.+ +++|+.+++++.|.+....|.+.+...+.+ . +++...-...+.. +++ ..|...-++.+ + ++.+.+.
T Consensus 4 ~~~v-~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~---~-~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 4 EFTV-PAPPDRVWALLLDIERVAPCLPGASLTEVE---G-DDEYKGTVKVKLG-PIS-ASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred eEEe-cCCHHHHHHHhcCHHHHHhcCCCceecccc---C-CCeEEEEEEEEEc-cEE-EEEEEEEEEEeccCCCcEEEEE
Confidence 4567 699999999999999999999855544332 1 2333233233332 221 23321112221 1 2222222
Q ss_pred EeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-C----CCHHHHHHhHhhhHHHHHHHHH
Q 014046 257 TKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-G----IPWEIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 257 skSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-G----IP~~LvN~~v~~g~~~~lkkL~ 331 (432)
..+.+ ....+.++ ..-.|.+.|.+ +| |+|+|....++ | +...+++..+.+.+-.|+++|+
T Consensus 77 ~~g~~----~~~~g~~~---~~~~~~l~~~~----~g----T~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~ 141 (146)
T cd07823 77 ATGKD----ARGQGTAE---ATVTLRLSPAG----GG----TRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLE 141 (146)
T ss_pred EEEec----CCCcceEE---EEEEEEEEecC----Cc----EEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHH
Confidence 22210 00112222 22245555521 23 69999998888 5 4455578888888888887776
Q ss_pred HHH
Q 014046 332 PAL 334 (432)
Q Consensus 332 ~al 334 (432)
+.+
T Consensus 142 ~~~ 144 (146)
T cd07823 142 ARL 144 (146)
T ss_pred HHh
Confidence 654
No 51
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=92.32 E-value=6.2 Score=33.36 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=71.4
Q ss_pred EEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEEEEE
Q 014046 178 RSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSYYCV 256 (432)
Q Consensus 178 Ka~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~~iv 256 (432)
....++ ++++++|++++.|.+.-.+|...+...+ ++. ..|....+.. ..+. +..+-..-++.+ +.+..+..
T Consensus 3 ~~s~~I-~a~~~~Vw~~l~d~~~~~~w~~~~~~~~-~~~--~~Gg~~~~~~-~~~~---g~~~~~~~~i~~~~~~~~i~~ 74 (139)
T cd07814 3 TIEREF-DAPPELVWRALTDPELLAQWFGPTTTAE-MDL--RVGGRWFFFM-TGPD---GEEGWVSGEVLEVEPPRRLVF 74 (139)
T ss_pred EEEEEe-cCCHHHHHHHcCCHHHHHhhhCcCCceE-Ecc--cCCceEEEEE-ECCC---CCEEeccEEEEEEcCCCeEEE
Confidence 456678 5999999999999999999988522221 121 2333322222 1111 111111111111 22222222
Q ss_pred EeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC-CCHHHHHHhHhhhHHHHHHHHHHHHH
Q 014046 257 TKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG-IPWEIAKLGVRQGMWGAVKKFDPALR 335 (432)
Q Consensus 257 skSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG-IP~~LvN~~v~~g~~~~lkkL~~alr 335 (432)
.-....+ |. .......|.|.|.+ +| |+|++.+..-++ .|........+++...++.+|++.|.
T Consensus 75 ~~~~~~~--~~------~~~~~~~~~~~~~~----~~----T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 138 (139)
T cd07814 75 TWAFSDE--TP------GPETTVTVTLEETG----GG----TRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALLE 138 (139)
T ss_pred EecccCC--CC------CCceEEEEEEEECC----CC----EEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHhh
Confidence 2111111 11 11346667788875 12 688888776664 55556666677778888877766653
No 52
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.00 E-value=5.7 Score=34.25 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=68.0
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEee--eecCCCcEEEEEEEeeceeecCceEEEEEEEE-eeCCEE
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLE--ECPNTGTMVVQWVRKFPFFCSDREYIIGRRIW-ESGRSY 253 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE--~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~-~~d~~~ 253 (432)
+..+-+| ++||+.|++++.|.+...+|+.........+ .....|... ++..+.+ . ..+-+.-++. -+.+..
T Consensus 2 i~~~~~i-~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~-g---~~~~~~~~v~~~~p~~~ 75 (144)
T cd07825 2 VSVSRTV-DAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVF-RMAMRLD-G---GPYRITNHVVAFEENRL 75 (144)
T ss_pred eEEEEEE-eCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEE-EEEEEcC-C---CceEEEEEEEEECCCCE
Confidence 4456778 6999999999999999999986322111111 111234433 3333432 1 1122111121 133434
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-CCCHHHHH--HhHhhhHHHHHHHH
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-GIPWEIAK--LGVRQGMWGAVKKF 330 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-GIP~~LvN--~~v~~g~~~~lkkL 330 (432)
++..... +..+.. .....|.++|+.. | .|+|++.+.... |.+.-+.. .....++-..|.+|
T Consensus 76 l~~~~~~--~~~~~~-------~~~~~~~l~~~~~----g---~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L 139 (144)
T cd07825 76 IAWRPGP--AGQEPG-------GHRWRWELEPIGP----G---RTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRL 139 (144)
T ss_pred EEEEccC--CCCCCC-------ceeEEEEEEECCC----C---cEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHH
Confidence 4433211 111111 1233577777652 2 268876653221 22222222 34577788888888
Q ss_pred HHHH
Q 014046 331 DPAL 334 (432)
Q Consensus 331 ~~al 334 (432)
++.+
T Consensus 140 ~~~~ 143 (144)
T cd07825 140 ATLA 143 (144)
T ss_pred HHHh
Confidence 7654
No 53
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=91.80 E-value=1.9 Score=39.62 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=77.4
Q ss_pred CeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEE
Q 014046 175 PQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYY 254 (432)
Q Consensus 175 ~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ 254 (432)
..|.....+ ..+|++++++..|.+.+++--+-+...+++++.+.+ .+---.+.+- .=|+.-..|-... ++.-.
T Consensus 2 ~~~~~s~lv-~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~--l~A~l~V~~k---~i~e~F~Trv~~~-~~~~~ 74 (146)
T COG2867 2 PQIERTALV-PYSASQMFDLVNDVESYPEFLPWCSASRVLERNERE--LIAELDVGFK---GIRETFTTRVTLK-PTARS 74 (146)
T ss_pred CeeEeeeec-cCCHHHHHHHHHHHHhCchhccccccceEeccCcce--eEEEEEEEhh---heeeeeeeeeeec-Cchhh
Confidence 356677788 499999999999999999999999999999864321 1111111111 0111111111111 11112
Q ss_pred EEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-C-CCHHHHHHhHhhhHHHHHHHHH
Q 014046 255 CVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-G-IPWEIAKLGVRQGMWGAVKKFD 331 (432)
Q Consensus 255 ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~ 331 (432)
|-.+.+ .|..| ...++|.|.|+.. + +|+|.+...-++ + |=..++..++.+..-.+++.+.
T Consensus 75 I~~~l~--------~GPFk--~L~~~W~F~pl~~---~----~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~ 136 (146)
T COG2867 75 IDMKLI--------DGPFK--YLKGGWQFTPLSE---D----ACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFE 136 (146)
T ss_pred hhhhhh--------cCChh--hhcCceEEEECCC---C----ceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 22222 5679999999952 1 699998887777 3 5555555555554444444333
No 54
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=89.46 E-value=0.032 Score=55.00 Aligned_cols=176 Identities=11% Similarity=-0.054 Sum_probs=104.2
Q ss_pred ceEEEccCCCCCcEEEEEe-CCCCCCCeEEEEEEEecCCHHHHHHhh-cCcchhhHHhHhcceeeEeeeecCCCcEEEEE
Q 014046 150 WIQMMDRSTPTMAYQAWRR-DPENGPPQYRSRTVYEDVTPEMVRDFF-WDDDSRLKWDDMLIYASTLEECPNTGTMVVQW 227 (432)
Q Consensus 150 We~v~dk~~~~~gikVwrR-~p~sGl~~YKa~~v~edaspe~V~d~~-~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~ 227 (432)
|...+. ...+.++++ .+....+.+++..++. ........++ .+.. +.-|+....-...++.+.. .+++ |
T Consensus 27 ~s~~k~----~~~v~~~~~a~~~~~~~i~~v~~~~~-lf~~~~~~~i~~~~~-i~~~~~g~~v~~~~~~~~~-~~~~--~ 97 (241)
T KOG3845|consen 27 WSVAKT----LKLVTVESLAGEKPKGNISRVRRFFC-LFVTEDLVFISLLWL-IELLQNGPEVYNMLEKIQK-NTDI--W 97 (241)
T ss_pred HHHHhh----cceeEEeccCCcCcCCcccccceeec-cccccchheeecchh-hHHHhccchHHHHHHHHHh-heee--e
Confidence 666655 778889899 4445666888888884 3333333333 3333 3334433222234443322 2222 2
Q ss_pred EEeece----eecCceEEEEEEEEe-eCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEE
Q 014046 228 VRKFPF----FCSDREYIIGRRIWE-SGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVIL 302 (432)
Q Consensus 228 v~K~P~----PvSdRDyV~~Rri~~-~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~ 302 (432)
..-+|- .++.|+++-...+.. .........+.+.++.++++..++|..+|++++...|++.+.. . ..-.-
T Consensus 98 ~s~~~~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~-~----~~~~~ 172 (241)
T KOG3845|consen 98 TSEFDSFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPF-I----LAWLR 172 (241)
T ss_pred eEecHhhhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcch-h----HHHHH
Confidence 333332 678999996655443 3334456778899999999999999999999999999986541 1 11222
Q ss_pred EEEecC-C-CCHHHHHHhHhhhHHHHHHHHHHHHHHHHH
Q 014046 303 FHHEDM-G-IPWEIAKLGVRQGMWGAVKKFDPALRAYVK 339 (432)
Q Consensus 303 ~~~~DP-G-IP~~LvN~~v~~g~~~~lkkL~~alrkY~~ 339 (432)
..|.|. | .|....+......+-.+..+..++...|.+
T Consensus 173 ~~~~d~rg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 211 (241)
T KOG3845|consen 173 EWFLDLRGLPQENVGERPEARTLVNFELAPLKAPKALME 211 (241)
T ss_pred HHHhhcccCCCccccccccccccchhhcchhhccccccc
Confidence 335566 5 566666665555566666554444444433
No 55
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.45 E-value=16 Score=31.71 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=32.4
Q ss_pred EEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEee
Q 014046 179 SRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLE 215 (432)
Q Consensus 179 a~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE 215 (432)
.+..+ ++++|+|++++.|.++-.+|.+.+.+.+++.
T Consensus 3 ~s~~I-~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~ 38 (137)
T cd07820 3 RSTVI-PAPIEEVFDFHSRPDNLERLTPPWLEFAVLG 38 (137)
T ss_pred EEEEc-CCCHHHHHHHHcCcchHHhcCCCCCCeEEEe
Confidence 45677 6999999999999999999999999988875
No 56
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=74.46 E-value=72 Score=29.45 Aligned_cols=133 Identities=16% Similarity=0.107 Sum_probs=73.5
Q ss_pred eEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeece-eecCceEEEEEEEEe---eCC
Q 014046 176 QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPF-FCSDREYIIGRRIWE---SGR 251 (432)
Q Consensus 176 ~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~-PvSdRDyV~~Rri~~---~d~ 251 (432)
.|..+-.+ +++||++.+++.|+|....=-+ -++.++. ++. -+-+..+.+. |++ ++|--.-+.-+ .++
T Consensus 2 ~~~G~f~V-~~p~e~Vw~~L~dpe~~a~ciP---G~qs~e~---~g~-e~~~~v~l~ig~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 2 DYEGTFRV-AAPPEAVWEFLNDPEQVAACIP---GVQSVET---NGD-EYTAKVKLKIGPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred cccceEEe-cCCHHHHHHHhcCHHHHHhhcC---Ccceeee---cCC-eEEEEEEEeeccee-EEEEEEEEEccccCCCc
Confidence 35566677 6999999999999998776655 4444553 222 2223344444 444 33332222211 233
Q ss_pred EEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC-----CCHHHHHHhHhhhHHHH
Q 014046 252 SYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG-----IPWEIAKLGVRQGMWGA 326 (432)
Q Consensus 252 ~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG-----IP~~LvN~~v~~g~~~~ 326 (432)
.|.+-..+ --..---++.+.+. -.++. .| +++.|....|.| +=..++.-++.+..-++
T Consensus 73 ~~~i~g~G--~~~~g~~~~~~~v~---------l~~~g--~g----t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~ 135 (146)
T COG3427 73 SITINGSG--GGAAGFADGTVDVQ---------LEPSG--EG----TRVNWFADANVGGKLAQLGSRLIDSVARKLINRF 135 (146)
T ss_pred EEEEEeec--ccccceeeeeeEEE---------EEEcC--CC----cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHH
Confidence 44444333 00001112222222 23322 23 489999999996 56667777777777778
Q ss_pred HHHHHHHH
Q 014046 327 VKKFDPAL 334 (432)
Q Consensus 327 lkkL~~al 334 (432)
+++|...+
T Consensus 136 ~~~l~~~l 143 (146)
T COG3427 136 FDCLSSEL 143 (146)
T ss_pred HHHHHHHH
Confidence 87776554
No 57
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=73.87 E-value=61 Score=28.36 Aligned_cols=137 Identities=12% Similarity=0.035 Sum_probs=69.1
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHhH----hcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCC
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWDD----MLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGR 251 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD~----tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~ 251 (432)
+...-.| ++|++.|++++.|.+...+|-. ++... .++ ...|....| ....| ...+|...-++.+ +..
T Consensus 2 l~i~r~i-~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~-~~d--~~~GG~~~~-~~~~~---~g~~~~~~g~v~~i~p~ 73 (146)
T cd08896 2 LVLSRTI-DAPRELVWRAWTEPELLKQWFCPKPWTTEVA-ELD--LRPGGAFRT-VMRGP---DGEEFPNPGCFLEVVPG 73 (146)
T ss_pred eEEEEEe-CCCHHHHHHHcCCHHHHhccCCCCCccceEE-EEE--eecCcEEEE-EEECC---CCCEecceEEEEEEeCC
Confidence 3456778 6999999999999999999943 11111 122 123443322 22222 1233322112221 333
Q ss_pred EEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC-CCHHHHHHhHhhhHHHHHHHH
Q 014046 252 SYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG-IPWEIAKLGVRQGMWGAVKKF 330 (432)
Q Consensus 252 ~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG-IP~~LvN~~v~~g~~~~lkkL 330 (432)
..+..+.......-|......++ .|.+.+.+ +| |++++.+..... .........+..|....|.+|
T Consensus 74 ~~l~~t~~~~~~~~~~~~~~~~v-----~~~~~~~~----~g----T~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L 140 (146)
T cd08896 74 ERLVFTDALTPGWRPAEKPFMTA-----IITFEDEG----GG----TRYTARARHWTEADRKQHEEMGFHDGWGTAADQL 140 (146)
T ss_pred CEEEEEEeecCCcCCCCCCcEEE-----EEEEEecC----Cc----EEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHH
Confidence 33444333221112222222232 47777753 23 588865432212 233345556678888889888
Q ss_pred HHHH
Q 014046 331 DPAL 334 (432)
Q Consensus 331 ~~al 334 (432)
+..+
T Consensus 141 ~~~l 144 (146)
T cd08896 141 AALA 144 (146)
T ss_pred HHHH
Confidence 7655
No 58
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=67.45 E-value=24 Score=34.50 Aligned_cols=132 Identities=11% Similarity=0.121 Sum_probs=81.2
Q ss_pred CeEEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEeeCCEEE
Q 014046 175 PQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWESGRSYY 254 (432)
Q Consensus 175 ~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~~d~~~~ 254 (432)
..|...-.+ +.+|++++++..|.+.+.+..+-+++..+.++.+ ++..+---.+-||.. +=.|+..-.. .... .
T Consensus 68 k~Y~errli-gysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P-~~~~kA~LeVGFk~l--~E~y~S~Vt~-~~p~--l 140 (227)
T KOG3177|consen 68 KAYSERRLI-GYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRP-SGPLKADLEVGFKPL--DERYTSNVTC-VKPH--L 140 (227)
T ss_pred HHHHHHhhh-CCCHHHHHHHHHhHHHhhccccceeccceeecCC-CCCceeeEEecCccc--chhheeeeEE-eccc--c
Confidence 357777788 7999999999999999999999999999998765 344444445555532 2223322111 1111 0
Q ss_pred EEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCC--CCHHHHHHhHhhhHHHHH
Q 014046 255 CVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAV 327 (432)
Q Consensus 255 ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPG--IP~~LvN~~v~~g~~~~l 327 (432)
+ +.+.+ .+ .=-...++.|.|.|-++.+ | +|.+.+..--... |=..++++++....-..+
T Consensus 141 ~--kt~~~------d~-rLF~~L~t~Wsf~pg~~~p--~---tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v 201 (227)
T KOG3177|consen 141 T--KTVCA------DG-RLFNHLITIWSFKPGPNIP--R---TCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMV 201 (227)
T ss_pred e--EEeec------cc-cHHHhhhheeeeccCCCCC--C---eEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHH
Confidence 1 11111 11 1123467889999988544 3 4877666555553 777788887765444433
No 59
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=67.44 E-value=70 Score=26.42 Aligned_cols=121 Identities=19% Similarity=0.222 Sum_probs=61.8
Q ss_pred cCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEEEEEEeccCCC
Q 014046 185 DVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSYYCVTKGVPYT 263 (432)
Q Consensus 185 daspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~~ivskSV~hp 263 (432)
|+|++.|++++.|.+...+| . .....+.....|..+.+ .. | ...++...-++.+ ..+..+...-...
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W--~--~~~~~~~~~~~Gg~~~~--~~-~---~g~~~~~~~~v~~~~p~~~i~~~~~~~-- 68 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW--F--TTSEAEMDFRPGGSFRF--MD-P---DGGEFGFDGTVLEVEPPERIVFTWRMP-- 68 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH--S--EEEEEEEECSTTEEEEE--EE-T---TSEEEEEEEEEEEEETTTEEEEEEEEE--
T ss_pred CcCHHHHHHHHCCHhHHhhc--c--CCCcceeeeecCCEEEE--Ee-c---CCCCceeeEEEEEEeCCEEEEEEEEcc--
Confidence 58999999999999999999 1 11222222234655444 22 2 2333333322222 3333333332221
Q ss_pred CCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCCCCHHHHHH-hHhhhHHHHHHHHHHHH
Q 014046 264 SVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKL-GVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 264 ~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPGIP~~LvN~-~v~~g~~~~lkkL~~al 334 (432)
.-+. .....-.+.+++.+ . .|++++.+. |+|..-... ....+...++.+|++.|
T Consensus 69 ~~~~------~~~~~v~~~~~~~~----~----~T~l~~~~~---~~~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 69 DDPD------GPESRVTFEFEEEG----G----GTRLTLTHS---GFPDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp TSSS------CEEEEEEEEEEEET----T----EEEEEEEEE---EEHSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CCCC------CCceEEEEEEEEcC----C----cEEEEEEEE---cCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 33444556666632 2 257776662 233322222 27777888888776654
No 60
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=63.32 E-value=1.1e+02 Score=27.27 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCCCeEEEEEEEecCCHHHHHHhhcCcchhhHHhH
Q 014046 172 NGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDD 206 (432)
Q Consensus 172 sGl~~YKa~~v~edaspe~V~d~~~D~e~R~kWD~ 206 (432)
+|...+...-+| +++++.|++++.|.+...+|..
T Consensus 8 ~~~~~i~~~~~i-~Ap~e~Vw~altdp~~~~~W~~ 41 (157)
T cd08899 8 DGGATLRFERLL-PAPIEDVWAALTDPERLARWFA 41 (157)
T ss_pred CCCeEEEEEEec-CCCHHHHHHHHcCHHHHHhhcC
Confidence 455678899999 6999999999999999999998
No 61
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=57.38 E-value=1.3e+02 Score=26.06 Aligned_cols=132 Identities=15% Similarity=0.067 Sum_probs=66.5
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHhHh-cceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEEE
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWDDM-LIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSYY 254 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD~t-l~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~~ 254 (432)
+...-.| +++++.|++++.|.+...+|-.. -......+.....|....| ....| ...+|-..-++.+ ..+..+
T Consensus 2 l~~~r~i-~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~-~~~~~---~g~~~~~~g~v~e~~p~~~l 76 (139)
T cd08894 2 IVTTRVI-DAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRF-VMHGP---DGTDYPNRIVFLEIEPPERI 76 (139)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEE-EEECC---CCCEecceEEEEEEcCCCEE
Confidence 4556778 69999999999999999999531 0011111211223443222 22222 1233332212221 333344
Q ss_pred EEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCCCC--HHHHHHhHhhhHHHHHHHHHH
Q 014046 255 CVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIP--WEIAKLGVRQGMWGAVKKFDP 332 (432)
Q Consensus 255 ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPGIP--~~LvN~~v~~g~~~~lkkL~~ 332 (432)
+.+-..+ + ....-.|.|+|.+ .| |++++.+. .++.. ...+..++..|.-..|.+|++
T Consensus 77 ~~t~~~~----~--------~~~~v~~~~~~~~----~g----T~ltl~~~-~~~~~~~~~~~~~~~~~Gw~~~l~~L~~ 135 (139)
T cd08894 77 VYDHGSG----P--------PRFRLTVTFEEQG----GK----TRLTWRQV-FPTAAERCEKIKFGAVEGNEQTLDRLAA 135 (139)
T ss_pred EEEeccC----C--------CcEEEEEEEEECC----CC----EEEEEEEE-cCCHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4433221 0 1123346677653 23 68887753 22311 123455677778888888766
Q ss_pred HH
Q 014046 333 AL 334 (432)
Q Consensus 333 al 334 (432)
.+
T Consensus 136 ~l 137 (139)
T cd08894 136 YL 137 (139)
T ss_pred HH
Confidence 54
No 62
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=57.07 E-value=1.4e+02 Score=26.53 Aligned_cols=114 Identities=12% Similarity=-0.005 Sum_probs=64.3
Q ss_pred EEEEEEEecCCHHHHHHhhcCcc--hhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEE
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDD--SRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSY 253 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e--~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~ 253 (432)
+..+.++ +++++.+++++.|.+ ....|-+.+..++.++-....| .|-.+.. +-.. +-..+-- |+.. ++...
T Consensus 3 ~~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~G-svR~~~~--~~~~-~~~~~kE-~l~~~D~~~~ 76 (148)
T cd07816 3 LEHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPG-SIKLITF--GPGG-KVKYVKE-RIDAVDEENK 76 (148)
T ss_pred EEEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCc-eEEEEEE--cCCC-cceEEEE-EEEEEccccc
Confidence 5667788 699999999999987 3578999888888776421112 3443332 2111 1112222 2332 33233
Q ss_pred EEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC
Q 014046 254 YCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM 308 (432)
Q Consensus 254 ~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP 308 (432)
.+..+-++-+. +. -....|.+.+.+.|... | .|.+.+...-++
T Consensus 77 ~~~y~vveg~~-~~----~~~~~y~~t~~v~~~~~----~---~t~v~Wt~~ye~ 119 (148)
T cd07816 77 TYKYTVIEGDV-LK----DGYKSYKVEIKFVPKGD----G---GCVVKWTIEYEK 119 (148)
T ss_pred EEEEEEEeccc-cc----CceEEEEEEEEEEECCC----C---CEEEEEEEEEEE
Confidence 33222232211 10 14778999999988732 1 267766666655
No 63
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=55.10 E-value=9 Score=26.87 Aligned_cols=18 Identities=39% Similarity=0.911 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhccc
Q 014046 26 LMAPLWIAVIVGVLVGWA 43 (432)
Q Consensus 26 ~~~p~~~~~~~g~~~gw~ 43 (432)
+|+|+-++++.+++|||.
T Consensus 14 LAAP~iagIi~s~iv~w~ 31 (35)
T PF13940_consen 14 LAAPIIAGIIASLIVGWL 31 (35)
T ss_pred hHhHHHHHHHHHHHHHHH
Confidence 579999999999999994
No 64
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=51.36 E-value=1.4e+02 Score=24.87 Aligned_cols=132 Identities=14% Similarity=0.015 Sum_probs=66.6
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEEe-eCCEEEE
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIWE-SGRSYYC 255 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~~-~d~~~~i 255 (432)
+....+| +++|+.|++++.|.+...+|..-.. .+.....|..+.+ ....+ +++...-++.+ +.+..++
T Consensus 2 ~~~~~~i-~ap~e~Vw~~~td~~~~~~W~~~~~----~~~~~~~G~~~~~-~~~~~-----~~~~~~~~v~~~~~~~~l~ 70 (136)
T cd08893 2 FVYVTYI-RATPEKVWQALTDPEFTRQYWGGTT----VESDWKVGSAFEY-RRGDD-----GTVDVEGEVLESDPPRRLV 70 (136)
T ss_pred eEEEEEe-cCCHHHHHHHHcCchhhhheecccc----cccCCcCCCeEEE-EeCCC-----cccccceEEEEecCCCeEE
Confidence 3456778 6999999999999999999976411 1111234555443 22221 11111111211 2222232
Q ss_pred EEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecCCCCHHHHHHhHhhhHHHHHHHHHHHH
Q 014046 256 VTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPAL 334 (432)
Q Consensus 256 vskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DPGIP~~LvN~~v~~g~~~~lkkL~~al 334 (432)
+.-.... .+. ........-.|.|.|.++ | |++++.+..-+. ..........+...++++|+..+
T Consensus 71 ~~~~~~~--~~~---~~~~~~~~v~~~l~~~~~----~----t~l~~~~~~~~~--~~~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 71 HTWRAVW--DPE---MAAEPPSRVTFEIEPVGD----V----VKLTVTHDGFPP--GSPTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEEecCC--Ccc---cCCCCCEEEEEEEEecCC----c----EEEEEEecCCCC--chhHHHhhhcCHHHHHHHHHHHh
Confidence 2221111 110 011122344456666542 3 477766654332 12355566778888888886655
No 65
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=47.26 E-value=22 Score=25.89 Aligned_cols=19 Identities=32% Similarity=0.808 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 014046 23 LMMLMAPLWIAVIVGVLVG 41 (432)
Q Consensus 23 ~~~~~~p~~~~~~~g~~~g 41 (432)
.++++||.-.|++.|++-|
T Consensus 7 fa~iMVPVvma~ilglIyG 25 (41)
T PF10766_consen 7 FAVIMVPVVMALILGLIYG 25 (41)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999866
No 66
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=44.76 E-value=5.7 Score=43.92 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=58.5
Q ss_pred eecCceEEEEEEEEeeCCEEEEEEeccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-C-CC
Q 014046 234 FCSDREYIIGRRIWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-G-IP 311 (432)
Q Consensus 234 PvSdRDyV~~Rri~~~d~~~~ivskSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-G-IP 311 (432)
|...|||+..| +.++.+..+++|.....-.| ||+...-+.+.|.|... |+ .+++++.-.|. | .|
T Consensus 575 ph~~~~~~ViR------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~----g~---sr~~~i~r~dlkg~~~ 640 (674)
T KOG2200|consen 575 PHPSRDFGVIR------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG----GQ---SRVTHICRVDLKGRSP 640 (674)
T ss_pred CCCCCCceeee------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC----cc---hhhhhhhhhhcccCCc
Confidence 45699999988 45778889999977777777 99999999999999864 43 38999999999 6 99
Q ss_pred HHHHHHh
Q 014046 312 WEIAKLG 318 (432)
Q Consensus 312 ~~LvN~~ 318 (432)
.|.-+.+
T Consensus 641 ~wy~k~f 647 (674)
T KOG2200|consen 641 EWYNKSF 647 (674)
T ss_pred hhhhccc
Confidence 9986544
No 67
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=42.34 E-value=31 Score=25.52 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCcc
Q 014046 18 DVIRELMMLMAPLWIAVIVGVLVGWAWKPK 47 (432)
Q Consensus 18 ~~~~~~~~~~~p~~~~~~~g~~~gw~w~p~ 47 (432)
|+....+-...-+++.+++-.++.|+|+|+
T Consensus 4 ~~~~~~~~~~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 4 ETLQGFARSIGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344444444455555555555677999987
No 68
>COG4420 Predicted membrane protein [Function unknown]
Probab=33.83 E-value=68 Score=30.89 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=32.7
Q ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCcc
Q 014046 3 LASVLLEILQKPSMVDVIRELMMLMAPLWIAVIVGVLVGWAWKPK 47 (432)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~gw~w~p~ 47 (432)
+.+.+..|++.+++.-+++=+ +=+|+++=++++.||+|.|-
T Consensus 47 ~ad~ia~f~Gsw~fil~~~~~----ll~Wi~lNl~~~~~~~wDpy 87 (191)
T COG4420 47 VADKIARFGGSWAFILTFTLL----LLLWIVLNLFLVPGLAWDPY 87 (191)
T ss_pred HHHHHHHHcCChHHHHHHHHH----HHHHHHHHHhhhcCCcCCCc
Confidence 456778888998888877644 44699999999999999874
No 69
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=32.78 E-value=3.4e+02 Score=23.76 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=69.4
Q ss_pred EEEEecCCHHHHHHhhcCcchhhHHhHhcceeeEeeeecCCCcEEEEEEEeeceeecCceEEEEEEEE--eeCCEEEEEE
Q 014046 180 RTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRRIW--ESGRSYYCVT 257 (432)
Q Consensus 180 ~~v~edaspe~V~d~~~D~e~R~kWD~tl~e~~vLE~~~~~gt~IvY~v~K~P~PvSdRDyV~~Rri~--~~d~~~~ivs 257 (432)
+-.+ ++++++++++|.|.+. |-.-+..++.+|... +..-.-...+.. |++- .|--.-++. +.++.+.+..
T Consensus 2 s~~v-~a~~~~vw~~l~D~~~---l~~ciPG~~~~e~~~--~~~~~~~~v~vG-~i~~-~~~g~~~~~~~~~~~~~~~~~ 73 (140)
T PF06240_consen 2 SFEV-PAPPEKVWAFLSDPEN---LARCIPGVESIEKVG--DEYKGKVKVKVG-PIKG-TFDGEVRITEIDPPESYTLEF 73 (140)
T ss_dssp EEEE-CS-HHHHHHHHT-HHH---HHHHSTTEEEEEEEC--TEEEEEEEEESC-CCEE-EEEEEEEEEEEETTTEEEEEE
T ss_pred cEEe-cCCHHHHHHHhcCHHH---HHhhCCCcEEeeecC--cEEEEEEEEEec-cEEE-EEEEEEEEEEcCCCcceEeee
Confidence 3467 5999999999999764 445555666676543 232222233332 2222 122111222 2334443433
Q ss_pred eccCCCCCCCCCCcEEEEEeeeEEEEEEeecCCCCCccccEEEEEEEEecC-C----CCHHHHHHhHhhhHHHHHHHHHH
Q 014046 258 KGVPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDGQLTACEVILFHHEDM-G----IPWEIAKLGVRQGMWGAVKKFDP 332 (432)
Q Consensus 258 kSV~hp~~P~~~g~VRV~~~~SgwvIrpl~s~~~~G~~~aCeVt~~~~~DP-G----IP~~LvN~~v~~g~~~~lkkL~~ 332 (432)
.+-.. .+-..+... ..+...+ . + .+++.|....+. | +...++.-++.+.+-+|+++|++
T Consensus 74 ~g~g~------~~~~~~~~~---~~~~~~~--~--~---~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 74 EGRGR------GGGSSASAN---ITLSLED--D--G---GTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLER 137 (140)
T ss_dssp EEEEC------TCCEEEEEE---EEEEECC--C--T---CEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCC------ccceEEEEE---EEEEcCC--C--C---CcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 122333211 2222222 1 1 159999999999 6 88888888899888888888876
Q ss_pred HH
Q 014046 333 AL 334 (432)
Q Consensus 333 al 334 (432)
.+
T Consensus 138 ~l 139 (140)
T PF06240_consen 138 KL 139 (140)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 70
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=31.18 E-value=54 Score=28.56 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=14.7
Q ss_pred hcCchHHHHHHHHHHHHH
Q 014046 11 LQKPSMVDVIRELMMLMA 28 (432)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (432)
....+..+++.|-++|++
T Consensus 40 Y~g~~~~~~llea~mCg~ 57 (107)
T TIGR01594 40 YMGGKFKRKLIDALMCAA 57 (107)
T ss_pred HcCccHHHHHHHHHHHHH
Confidence 446678899999999985
No 71
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=30.45 E-value=51 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 014046 20 IRELMMLMAPLWIAVIVGVLVGW 42 (432)
Q Consensus 20 ~~~~~~~~~p~~~~~~~g~~~gw 42 (432)
+-||+--|+-.|.-+++||.+|.
T Consensus 2 a~EIf~~A~i~~~LvlvGlalGf 24 (32)
T PRK11876 2 ASEIFGIAALFWVLIPVGLAGGA 24 (32)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788888999999988875
No 72
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.82 E-value=51 Score=28.37 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=24.2
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHh
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWD 205 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD 205 (432)
+...-.| ++|++.|++++.|.+...+|-
T Consensus 2 ~~~~~~~-~ap~e~Vw~a~td~e~~~~W~ 29 (133)
T cd08897 2 ITVETTV-DAPIEKVWEAWTTPEHITKWN 29 (133)
T ss_pred EEEEEEe-CCCHHHHHHHhCCHHHHhhCC
Confidence 3456678 699999999999999999994
No 73
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=28.90 E-value=3.9e+02 Score=23.21 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=24.1
Q ss_pred EEEEEEecCCHHHHHHhhcCcchhhHHhH
Q 014046 178 RSRTVYEDVTPEMVRDFFWDDDSRLKWDD 206 (432)
Q Consensus 178 Ka~~v~edaspe~V~d~~~D~e~R~kWD~ 206 (432)
...-.| +++++.|++++.|.+...+|-.
T Consensus 3 ~~~r~i-~ap~e~Vw~a~td~~~~~~W~~ 30 (146)
T cd08895 3 RLHRVI-AAPPERVYRAFLDPDALAKWLP 30 (146)
T ss_pred EEEEEE-CCCHHHHHHHHcCHHHHhhcCC
Confidence 345678 6999999999999999999964
No 74
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.59 E-value=29 Score=30.90 Aligned_cols=14 Identities=29% Similarity=0.788 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhccc
Q 014046 30 LWIAVIVGVLVGWA 43 (432)
Q Consensus 30 ~~~~~~~g~~~gw~ 43 (432)
++++++||++||+.
T Consensus 2 ~~i~lvvG~iiG~~ 15 (128)
T PF06295_consen 2 AIIGLVVGLIIGFL 15 (128)
T ss_pred hHHHHHHHHHHHHH
Confidence 46788888888875
No 75
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=26.71 E-value=75 Score=21.98 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 014046 22 ELMMLMAPLWIAVIVGVLVGW 42 (432)
Q Consensus 22 ~~~~~~~p~~~~~~~g~~~gw 42 (432)
||+..|+-.|.-+++||.+|.
T Consensus 2 EIf~~a~i~~~lvlvGla~Gf 22 (31)
T PF08041_consen 2 EIFNIAVICFGLVLVGLALGF 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 466677778889999988875
No 76
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.49 E-value=68 Score=27.31 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=26.5
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhhHHhHh
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRLKWDDM 207 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~kWD~t 207 (432)
++...+| ++++++|++++.|.+...+|..-
T Consensus 3 i~~~i~i-~a~~e~Vw~~~td~~~~~~W~~~ 32 (145)
T cd08898 3 IERTILI-DAPRERVWRALTDPEHFGQWFGV 32 (145)
T ss_pred eEEEEEe-cCCHHHHHHHhcChhhhhhcccc
Confidence 5667788 69999999999999999999874
No 77
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=26.44 E-value=87 Score=23.43 Aligned_cols=28 Identities=29% Similarity=0.448 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCccc
Q 014046 21 RELMMLMAPLWIAVIVGVLVGWAWKPKW 48 (432)
Q Consensus 21 ~~~~~~~~p~~~~~~~g~~~gw~w~p~w 48 (432)
..++-..+=++..++.-.+|.|+.+|+=
T Consensus 8 r~~a~~~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 8 RGLADSWGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3333333334455666667889999973
No 78
>COG3330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.91 E-value=84 Score=30.70 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=46.0
Q ss_pred EEEEEEEecCCHHHHHHhhcCcchhh-HHhHhcceeeEeeeecCCCcEE-EEEE------EeeceeecCceEEEEEEEEe
Q 014046 177 YRSRTVYEDVTPEMVRDFFWDDDSRL-KWDDMLIYASTLEECPNTGTMV-VQWV------RKFPFFCSDREYIIGRRIWE 248 (432)
Q Consensus 177 YKa~~v~edaspe~V~d~~~D~e~R~-kWD~tl~e~~vLE~~~~~gt~I-vY~v------~K~P~PvSdRDyV~~Rri~~ 248 (432)
|=+.+.+ |++++.--.|-.. .+. +|--.+-..+.++-...+-..+ -|.. .-+|.|+++|||++---+.-
T Consensus 58 ~~~yayW-dis~~t~~~~~~q--~~ed~~~lRlYDvT~~~~~~~nah~~~e~~~delt~nwYi~ip~~d~DY~idiGyl~ 134 (215)
T COG3330 58 YWAYAYW-DISPITRELFRYQ--GGEDELALRLYDVTDVDFLGQNAHRIQEYYLDELTRNWYIPIPVSDRDYLIDIGYLT 134 (215)
T ss_pred cEEEEEE-cCCHHHHHHHHhh--cccchhheecceeeEEEecCCCccceeEEecCchhhcceeccCCCccceEEEeeeEc
Confidence 5556677 6777665444321 111 4544444444444222111111 1111 23477899999998665555
Q ss_pred eCCEEEEEEe--ccCCCCCCC
Q 014046 249 SGRSYYCVTK--GVPYTSVPR 267 (432)
Q Consensus 249 ~d~~~~ivsk--SV~hp~~P~ 267 (432)
.++.++.+.+ .|.-|..++
T Consensus 135 ~dG~fl~laRS~~vrtP~~~~ 155 (215)
T COG3330 135 PDGRFLTLARSNPVRTPRAYP 155 (215)
T ss_pred CCCcEEEEEecccccCCCCCc
Confidence 6777886655 444454444
No 79
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=22.80 E-value=38 Score=34.64 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhc-cccC-ccc--------------ccccccccccccccc
Q 014046 27 MAPLWIAVIVGVLVG-WAWK-PKW--------------ANLGLMDSSVSISKE 63 (432)
Q Consensus 27 ~~p~~~~~~~g~~~g-w~w~-p~w--------------~~~~~~~~~~~~~~~ 63 (432)
.-++++|.++|+++| |.++ |+| .++++||++++++..
T Consensus 26 l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i 78 (305)
T PF03601_consen 26 LGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDI 78 (305)
T ss_pred ccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHH
Confidence 356789999999999 6775 555 567788988766653
No 80
>PF11772 EpuA: DNA-directed RNA polymerase subunit beta; InterPro: IPR024596 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the short 60-residue long bacterial family that is the beta subunit of the DNA-directed RNA polymerase, likely to be 2.7.7.6 from EC It is membrane-bound and is referred to by the name EpuA.
Probab=20.63 E-value=51 Score=24.75 Aligned_cols=14 Identities=21% Similarity=0.757 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhccc
Q 014046 30 LWIAVIVGVLVGWA 43 (432)
Q Consensus 30 ~~~~~~~g~~~gw~ 43 (432)
+-+++++|++||++
T Consensus 8 ~~~~l~iGlmIGY~ 21 (47)
T PF11772_consen 8 AILALAIGLMIGYG 21 (47)
T ss_pred HHHHHHHHHHeeee
Confidence 45788999999986
No 81
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.46 E-value=5.5e+02 Score=22.03 Aligned_cols=28 Identities=14% Similarity=0.045 Sum_probs=24.0
Q ss_pred EEEEEEecCCHHHHHHhhcCcchhhHHhH
Q 014046 178 RSRTVYEDVTPEMVRDFFWDDDSRLKWDD 206 (432)
Q Consensus 178 Ka~~v~edaspe~V~d~~~D~e~R~kWD~ 206 (432)
+....| ++|++.|++++.|.+...+|-.
T Consensus 3 ~~~~~i-~ap~e~Vw~a~t~p~~l~~W~~ 30 (136)
T cd08901 3 KTAMLI-RRPVAEVFEAFVDPEITTKFWF 30 (136)
T ss_pred eEEEEe-cCCHHHHHHHhcCHHHhccccc
Confidence 456678 6999999999999999999844
Done!