BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014047
         (431 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BGI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus Complexed With Three Molecules Of
           The Detergent N-Heptyl-Beta-D-Thioglucoside At 1.7
           Angstroms
 pdb|2BGJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus At 2.1 Angstroms
 pdb|2BGJ|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus At 2.1 Angstroms
 pdb|2BGJ|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus At 2.1 Angstroms
 pdb|2BGJ|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus At 2.1 Angstroms
 pdb|2VNH|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus In Complex With Nadp. Form Ii At
           2. 27 Angstroms Resolution
 pdb|2VNI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus In Complex With 2p-Amp At 2.37
           Angstroms Resolution
 pdb|2VNJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus In Complex With Nadp. Form I At
           2. 13 Angstroms Resolution
 pdb|2VNK|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
           1. 93 Angstroms Resolution
 pdb|2VNK|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
           1. 93 Angstroms Resolution
 pdb|2VNK|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
           1. 93 Angstroms Resolution
 pdb|2VNK|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
           Rhodobacter Capsulatus In Complex With Nadp. Form Iii At
           1. 93 Angstroms Resolution
          Length = 272

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 324 YSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365
           YS+ VP       L+H  +    IL   P+G L+   LL GK
Sbjct: 80  YSIKVPDGPLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGK 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,894,062
Number of Sequences: 62578
Number of extensions: 402469
Number of successful extensions: 990
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 4
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)