Query 014047
Match_columns 431
No_of_seqs 323 out of 2393
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-21 4.4E-26 194.1 19.9 181 209-409 246-436 (451)
2 3o7q_A L-fucose-proton symport 99.8 3.6E-19 1.2E-23 175.8 19.8 172 208-400 251-426 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.8 7.9E-17 2.7E-21 161.7 22.5 179 217-411 285-476 (491)
4 2cfq_A Lactose permease; trans 99.7 4.9E-17 1.7E-21 160.1 13.2 179 209-407 214-400 (417)
5 4gc0_A D-xylose-proton symport 99.7 2.1E-15 7.3E-20 151.1 21.5 174 228-415 290-471 (491)
6 2gfp_A EMRD, multidrug resista 99.7 1.8E-16 6.1E-21 153.4 10.2 241 3-393 116-363 (375)
7 1pw4_A Glycerol-3-phosphate tr 99.6 1.6E-15 5.6E-20 150.0 12.6 177 213-409 26-209 (451)
8 4aps_A DI-OR tripeptide H+ sym 99.6 3.3E-14 1.1E-18 142.5 20.1 173 215-407 13-197 (491)
9 3o7q_A L-fucose-proton symport 99.6 1.7E-14 5.8E-19 142.2 16.4 182 217-405 28-228 (438)
10 2gfp_A EMRD, multidrug resista 99.6 3.2E-14 1.1E-18 137.5 14.7 166 219-404 4-172 (375)
11 2xut_A Proton/peptide symporte 99.5 9.6E-14 3.3E-18 140.4 15.0 172 214-405 11-197 (524)
12 2xut_A Proton/peptide symporte 99.4 6.5E-13 2.2E-17 134.2 12.5 153 253-411 340-507 (524)
13 4gc0_A D-xylose-proton symport 99.3 4.3E-11 1.5E-15 119.7 14.4 138 253-402 60-216 (491)
14 2cfq_A Lactose permease; trans 99.2 4.6E-12 1.6E-16 124.4 2.0 169 210-399 2-180 (417)
15 2knc_B Integrin beta-3; transm 33.9 87 0.003 21.9 5.3 17 389-405 15-31 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.88 E-value=1.3e-21 Score=194.15 Aligned_cols=181 Identities=16% Similarity=0.126 Sum_probs=146.3
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhh--hcccCcch
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHY--VRSKAIPR 283 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~--grr~~~~r 283 (431)
++.+|++.+|...+..++.......+..++|.++++ +|++.... ..++..++..+++++.|+++||+ +||+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-- 323 (451)
T 1pw4_A 246 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-- 323 (451)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH--
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH--
Confidence 567889999999999888888888888999999987 58887654 78888999999999999999999 887654
Q ss_pred HHHHHHHHHHHH-HHHHHHHhh---hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHh-HHHHH
Q 014047 284 TVWITCTHIMMI-LTFLLYASA---LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPI-GALLF 358 (431)
Q Consensus 284 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~ 358 (431)
.++..+.. ++++.+... +.....+..++.|++.+...+....++.|.+|++++|++.|+.+....+ |..+
T Consensus 324 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~- 398 (451)
T 1pw4_A 324 ----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA- 398 (451)
T ss_dssp ----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH-
Confidence 33333333 444444332 2234566667888888888888889999999999999999999999999 9999
Q ss_pred hhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 359 SGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 359 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+|.+.|.+.|..+ |+..|++.+++.+++.++.++..++
T Consensus 399 ~~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 399 ASAIVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHSSC-------------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999876 9999999998888887776665443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.82 E-value=3.6e-19 Score=175.85 Aligned_cols=172 Identities=17% Similarity=0.144 Sum_probs=135.1
Q ss_pred HHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHH-HHHh-CCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcch
Q 014047 208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVAL-GVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPR 283 (431)
Q Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r 283 (431)
+++++|++.+|...+..++.......+..++|.| .++. |++.... ..++..++..+++++.|+++||+|||+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-- 328 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL-- 328 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 3678899999999999888888888888999999 8876 8887665 77788899999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 284 TVWITCTHIMMILTFLLYASALSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
..+.++..++++++...+.....+..++.|++.+..++...++..|.+|++ ++.+.++.. ...+|..+ +|.+.
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~ 401 (438)
T 3o7q_A 329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM 401 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence 555555555555555444444455567888999989999999989999866 888888777 55688888 89999
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHH
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGT 400 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~ 400 (431)
|.+.|..++ |+..|++.+++.++..
T Consensus 402 g~l~~~~g~------------~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 402 GFVSDAAGN------------IPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHTS------------SGGGGHHHHHHHHHHH
T ss_pred HHHHHHhcc------------hHHHHHHHHHHHHHHH
Confidence 999998874 7778887655544433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.75 E-value=7.9e-17 Score=161.68 Aligned_cols=179 Identities=14% Similarity=0.023 Sum_probs=121.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCCc--chhHHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIM 293 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~--~~~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~ 293 (431)
.+.+++..++...........+|.+.++. +.+. .....+...++..++.++.|+++||++||+.... ..+..+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~-~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP-TKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch-HHHHHHHHH
Confidence 33444444444444445666778888764 6552 2236777888888999999999999999876421 222344444
Q ss_pred HHHHHHHHHhh----------hhhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHH
Q 014047 294 MILTFLLYASA----------LSGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLA 363 (431)
Q Consensus 294 ~~~~~~~~~~~----------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~ 363 (431)
..+++.++... +.....+..++.|++.+...+....++.|.+|++.||++.|+.+....+|..+ +|.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44554443321 22355666788899998888889999999999999999999999999999999 78788
Q ss_pred HHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhhch
Q 014047 364 GKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIRIR 411 (431)
Q Consensus 364 g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~ 411 (431)
+.+.+. + +...|++.+++++++.++.+++.++.+
T Consensus 443 ~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 443 TLYNAK-S-------------EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGGGGS-S-------------TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHhcc-c-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777653 2 677888888888777776666544443
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.71 E-value=4.9e-17 Score=160.13 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=129.2
Q ss_pred HHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHh-CCC---cch--hHHHHHHHHHhhhhhhhhHHhHhhhcccCcc
Q 014047 209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVN---DTT--ELLCLFSLCNFAGRLGSGVLSEHYVRSKAIP 282 (431)
Q Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s---~~~--~~~s~~~i~~~ig~~~~G~lsDr~grr~~~~ 282 (431)
++.+|++.+|...+..++.......+..++|.++++. +.. ... ...++..++..++.++.|+++||+|||+.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l- 292 (417)
T 2cfq_A 214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL- 292 (417)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-
T ss_pred HHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH-
Confidence 5678888888877665555444445556788887664 321 111 155566678889999999999999998765
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHH-HHHHHhHHHHHhh
Q 014047 283 RTVWITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFI-LLGNPIGALLFSG 360 (431)
Q Consensus 283 r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~i~~p 360 (431)
..+.++.++..+.+...+ ...+++..++.+++.+...+....+++|.+|++.||+++++. +....+|+.+ +|
T Consensus 293 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-gp 366 (417)
T 2cfq_A 293 -----LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MS 366 (417)
T ss_dssp -----HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-HT
T ss_pred -----HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-hh
Confidence 445555555544444333 234445556667777766677788999999999999999995 7888899999 89
Q ss_pred hHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 361 LLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 361 ~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
.+.|.+++..+ |+..|.+.+++++++.++.+...
T Consensus 367 ~l~G~l~~~~g-------------~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 367 VLAGNMYESIG-------------FQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HHHHTHHHHSH-------------HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999776 88899988888888776655433
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.68 E-value=2.1e-15 Score=151.14 Aligned_cols=174 Identities=7% Similarity=-0.015 Sum_probs=115.0
Q ss_pred hhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh--
Q 014047 228 VGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-- 303 (431)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-- 303 (431)
......+..+.+.+.+..+.+.... ...+..+...++.++++++.||+|||+.+ ..+...+.++++.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHH
Confidence 3344456667777777777665544 55667788899999999999999999766 3333333333333221
Q ss_pred -hh-h-hHHHHHHHHHHHHhhh-hhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccc
Q 014047 304 -AL-S-GTLYAATVLLGVCYGV-IYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTC 379 (431)
Q Consensus 304 -~~-~-~~~~~~~~l~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~ 379 (431)
.. . ...++..++...+++. ..+..+.+.+|+||++.|+++.|+.+....+++.+ ++.+...+.+.....
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~------ 436 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLV------ 436 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHH------
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH------
Confidence 11 1 2222223333333333 33566789999999999999999999999999988 777776665432100
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 014047 380 IGAECFRLTFLVLAGVCGLGTILSIILTIRIRPVYQ 415 (431)
Q Consensus 380 ~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~ 415 (431)
...++..+|++.+++++++.++.+++.+|+|.+..
T Consensus 437 -~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 437 -AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 00115567888888999998888888888876644
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.66 E-value=1.8e-16 Score=153.42 Aligned_cols=241 Identities=13% Similarity=0.007 Sum_probs=174.2
Q ss_pred CCC-CCCCchhhhhhhhhhhhHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHhhhheecccCCCCCCCCCCccchHHHH
Q 014047 3 NFP-LSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQ 81 (431)
Q Consensus 3 ~fp-~~rg~~~gi~~~~~gl~~~i~~~l~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (431)
.+| ++|+++.|+.....++|..++|.+++.+.+..+||+.|++.....++..+...+ ..|+++++ ++ +
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~-~------- 184 (375)
T 2gfp_A 116 LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMAR--WMPETRPV-DA-P------- 184 (375)
T ss_dssp HHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCC--SSCCCSTT-TC-C-------
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HCcccCCC-Cc-c-------
Confidence 355 799999999999999999999999999988889999999887777766664442 22221100 00 0
Q ss_pred HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhhhhccccccccccccccccCCCCCcccccCCCCCCCCCC
Q 014047 82 AASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPL 161 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 161 (431)
.++
T Consensus 185 ---------------------------------------------------------------------------~~~-- 187 (375)
T 2gfp_A 185 ---------------------------------------------------------------------------RTR-- 187 (375)
T ss_dssp ---------------------------------------------------------------------------CCC--
T ss_pred ---------------------------------------------------------------------------ccc--
Confidence 000
Q ss_pred CCCCCcccccCCCCCCCCchhhHHHHHhccccccccCCCCCCCCCCHHHHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHH
Q 014047 162 LTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI 241 (431)
Q Consensus 162 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (431)
...++++.+|+|.+|...+..++.......+..+.|.+
T Consensus 188 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (375)
T 2gfp_A 188 ------------------------------------------LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVL 225 (375)
T ss_dssp ------------------------------------------TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCS
T ss_pred ------------------------------------------HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112678899999999988888887777888888888
Q ss_pred HHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHH
Q 014047 242 GVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS---ALSGTLYAATVL 315 (431)
Q Consensus 242 ~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l 315 (431)
.++ +|.+.... ..+...++..+++++.|+++||++++... ............+.... .+...+++..++
T Consensus 226 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 300 (375)
T 2gfp_A 226 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ-----SVICCLLAGLLMWIPDWFGVMNVWTLLVPAAL 300 (375)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHH-----HHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 876 58776554 77788899999999999999999873111 11110111111111111 122345566788
Q ss_pred HHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHH
Q 014047 316 LGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLA 393 (431)
Q Consensus 316 ~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~ 393 (431)
.|++.+...+...+++.|.+| +++|++.|+.+....+|..+ +|.+.|.+.+..+ |...+++.+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~~-------------~~~~~~~~~ 363 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-LASLSAMLPQTGQ-------------GSLGLLMTL 363 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-CSTTCTHHHHHHH-------------HHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-HHHHHHHHhcCCc-------------ccHHHHHHH
Confidence 899999999999999999998 89999999999999999999 8889999988765 777776543
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.62 E-value=1.6e-15 Score=150.01 Aligned_cols=177 Identities=12% Similarity=0.004 Sum_probs=141.6
Q ss_pred hhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHH
Q 014047 213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCT 290 (431)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~ 290 (431)
+.+.++...+..++.......+...+|.+.+++ .+..+. +.+...++..++.+++|+++||+|||+.+ .++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHH
Confidence 344555666666655555555667788888888 776654 88899999999999999999999999776 666
Q ss_pred HHHHHHHHHHHHh----hh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHH
Q 014047 291 HIMMILTFLLYAS----AL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGK 365 (431)
Q Consensus 291 ~~~~~~~~~~~~~----~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~ 365 (431)
.++.+++.++++. .+ ...+++.+++.|++.+...+...+++.|.+|+++|+++.|+.+.+..+|..+ +|.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~ 177 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6666677666655 43 3567788899999999999999999999999999999999999999999999 8989988
Q ss_pred HHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 014047 366 LYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILTIR 409 (431)
Q Consensus 366 i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~ 409 (431)
+.+..++ ||++|++.++++++..++.++..++
T Consensus 178 l~~~~g~------------w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 178 GMAWFND------------WHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHHTCC------------STTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhcc------------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 8876543 9999999888887776665555444
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.60 E-value=3.3e-14 Score=142.52 Aligned_cols=173 Identities=12% Similarity=0.191 Sum_probs=142.5
Q ss_pred HhHHHHHHHHHHhhhhHHHHHhhHHHHHHH------hCCCcchh--HHHHHHHHHhhhhhhhhHHhHh-hhcccCcchHH
Q 014047 215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA------LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEH-YVRSKAIPRTV 285 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr-~grr~~~~r~~ 285 (431)
+.+|.+.+..++.....+.+..+++.++++ +|.+.... ..+.+.++..++.+++|+++|| +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~---- 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV---- 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH----
Confidence 356777777777777777777788887765 78887665 8889999999999999999999 8999877
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCc--hhhHHHHHHHHHHhHHHHHhhhH
Q 014047 286 WITCTHIMMILTFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKH--FGLIYNFILLGNPIGALLFSGLL 362 (431)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~p~i 362 (431)
..+.++..++.++++..+ ...+++.+++.|++.|...+...+++.|.+|+++ |+.+.++.+.+..+|..+ +|.+
T Consensus 89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~ 165 (491)
T 4aps_A 89 --FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLI 165 (491)
T ss_dssp --HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHH
Confidence 666777777776666554 3567888899999999999999999999999988 778888899999999999 8999
Q ss_pred HHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 014047 363 AGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSIILT 407 (431)
Q Consensus 363 ~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 407 (431)
++.+.+..+ |++.|++.+++.+++.++.++..
T Consensus 166 ~~~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~~~ 197 (491)
T 4aps_A 166 VGAAQEAAG-------------YHVAFSLAAIGMFIGLLVYYFGG 197 (491)
T ss_dssp HHHHHHHSC-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-------------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998876 99999998887777766655443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.59 E-value=1.7e-14 Score=142.23 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHH
Q 014047 217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMM 294 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~ 294 (431)
++.+.+.+++...........+|.+.+++|.+..+. +.+...++..++.+++|+++||+|||+.+ .++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHH
Confidence 344444455455555566677888888999998765 88999999999999999999999999877 6666666
Q ss_pred HHHHHHH---Hhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhh
Q 014047 295 ILTFLLY---ASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAE 370 (431)
Q Consensus 295 ~~~~~~~---~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~ 370 (431)
+++.++. ...+ .+.+++.+++.|++.|...+...+++.|.+|+++|+.+.++.+.+..+|..+ +|.+++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~~~~ 180 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHHHTS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 6666555 4433 3567788899999999999999999999999999999999999999999999 888888887332
Q ss_pred hcccCC-------------cccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 371 ATKQGS-------------STCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 371 ~~~~~~-------------~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
....++ .......+|++.|++.+++.++..++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 210000 00000012889998777766665554433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.56 E-value=3.2e-14 Score=137.52 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=136.0
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHhCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHH
Q 014047 219 LLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMIL 296 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~ 296 (431)
.+.+..++.......+...+|.+.+++|.+..+. ..+...++..++.+++|+++||+|||+.+ ..+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3445555555566667777888888889887765 88899999999999999999999999998 666666666
Q ss_pred HHHHHHhhh-hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccC
Q 014047 297 TFLLYASAL-SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQG 375 (431)
Q Consensus 297 ~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~ 375 (431)
+.+.....+ ...+++.+++.|++.+...+...+++.|.+|+++|+++.++.+....+|..+ +|.+.+.+.+..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence 666555444 3567778899999999999999999999999999999999999999999999 8989999888776
Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHHH
Q 014047 376 SSTCIGAECFRLTFLVLAGVCGLGTILSI 404 (431)
Q Consensus 376 ~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 404 (431)
|++.|++.+++.++..+...
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 153 ---------WRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHCCCC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH
Confidence 99999988877776655333
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.52 E-value=9.6e-14 Score=140.37 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=137.3
Q ss_pred hHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hC------CCcchh--HHHHHHHHHhhhhhhhhHHhHhh-hcccCcch
Q 014047 214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LG------VNDTTE--LLCLFSLCNFAGRLGSGVLSEHY-VRSKAIPR 283 (431)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~-grr~~~~r 283 (431)
.+.+|.+.+..++.....+....+++.++++ +| .+.... +.+.+.++..++.+++|+++||+ |||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~-- 88 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI-- 88 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH--
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 3456777777777777777788888887764 58 777665 88889999999999999999999 999776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHH---HHHHHHhHHHHH
Q 014047 284 TVWITCTHIMMILTFLLYASAL--SGTLYAATVLLGVCYGVIYSLMVPTASELFGLKHFGLIYNF---ILLGNPIGALLF 358 (431)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~~i~ 358 (431)
.++.++..++.+++...+ ...+++.+++.|++.|...+...+++.|.+|+++|++..++ .+.+..+|..+
T Consensus 89 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~- 163 (524)
T 2xut_A 89 ----LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF- 163 (524)
T ss_dssp ----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-
T ss_pred ----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-
Confidence 566666666666655543 35677778999999999999999999999999999876666 88889999999
Q ss_pred hhhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q 014047 359 SGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLGTILSII 405 (431)
Q Consensus 359 ~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 405 (431)
+|.+.+.+.+..+ |++.|++.+++.+++.++.++
T Consensus 164 g~~~~~~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 164 ASLSMPLLLKNFG-------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSTHHHHTSC-------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccc-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8889999988766 999999988877766655443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.42 E-value=6.5e-13 Score=134.22 Aligned_cols=153 Identities=13% Similarity=-0.003 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhhhhhhhHHh----HhhhcccCcchHHHHHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLS----EHYVRSKAIPRTVWITCTHIMMILTFLLYASA----------LSGTLYAATVLLGV 318 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~ls----Dr~grr~~~~r~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~G~ 318 (431)
..+...++..++.++.+++. ||.++|.... ..+.++.++.+++++.+... +...+++..++.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKLTAL--RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHTTSGGGHHHHGGGTTTC------------CCH--HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 44444455566666666654 4444332211 12244555555555544331 22345666788899
Q ss_pred HhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCccccccccc-HHHHHHHHHHHH
Q 014047 319 CYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECF-RLTFLVLAGVCG 397 (431)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~ 397 (431)
+.+...+...+++.|.+|++.+|++.|+.++...+|+.+ +|.+.|.+.+..+.... .. ...+. +..|++.+++++
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ 493 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW-VLLANVSVKSPTVTEQI--VQ-TGMSVTAFQMFFFAGFAI 493 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHH-HHHHHHHTTSCHHHHHH--HH-HHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhccccccccc--cc-ccccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 89899988874320000 00 00001 334777777777
Q ss_pred HHHHHHHHHHhhch
Q 014047 398 LGTILSIILTIRIR 411 (431)
Q Consensus 398 i~~i~~~~~~~~~~ 411 (431)
++.++.+++.++.+
T Consensus 494 ~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 494 LAAIVFALYARSYQ 507 (524)
T ss_dssp HHHHHHC-------
T ss_pred HHHHHHHHHHHHhc
Confidence 77666555544443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.26 E-value=4.3e-11 Score=119.68 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHHHHHHHHHHHHHHHHHHh-------------------hhhhHHHHHH
Q 014047 253 LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVWITCTHIMMILTFLLYAS-------------------ALSGTLYAAT 313 (431)
Q Consensus 253 ~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 313 (431)
+.+.+.++.++|.+++|+++||+|||+.+ .++.+++.++.++.++ .+...+++.+
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 67788899999999999999999999877 6666666666655542 2235688899
Q ss_pred HHHHHHhhhhhhhHHHHHHHhhcCCchhhHHHHHHHHHHhHHHHHhhhHHHHHHhhhhcccCCcccccccccHHHHHHHH
Q 014047 314 VLLGVCYGVIYSLMVPTASELFGLKHFGLIYNFILLGNPIGALLFSGLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLA 393 (431)
Q Consensus 314 ~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~ 393 (431)
++.|++.|+..+..+.+++|..|++.|+...++.+.+..+|..+ ++.+...+....+. .......|+..+.+..
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 207 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIARSGDA-----SWLNTDGWRYMFASEC 207 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSCT-----TTTTTTHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhcccccc-----ccccchhhHHHhhhhh
Confidence 99999999999999999999999999999999999999998888 66454444433221 0111233777766655
Q ss_pred HHHHHHHHH
Q 014047 394 GVCGLGTIL 402 (431)
Q Consensus 394 ~~~~i~~i~ 402 (431)
+..++..+.
T Consensus 208 ~~~~~~~~~ 216 (491)
T 4gc0_A 208 IPALLFLML 216 (491)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhh
Confidence 555444333
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.17 E-value=4.6e-12 Score=124.42 Aligned_cols=169 Identities=11% Similarity=0.169 Sum_probs=110.4
Q ss_pred HHhhhHhHHHHHHHHHHhhhhHHHHHhhHHHHHHH-hCCCcchh--HHHHHHHHHhhhhhhhhHHhHhhhcccCcchHHH
Q 014047 210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVNDTTE--LLCLFSLCNFAGRLGSGVLSEHYVRSKAIPRTVW 286 (431)
Q Consensus 210 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~--~~s~~~i~~~ig~~~~G~lsDr~grr~~~~r~~~ 286 (431)
+.+|++++|.+....++.......+...+|.++++ +|.+..+. +.+...++..++++++|+++||+|||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l----- 76 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL----- 76 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH-----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-----
Confidence 35789999998888777766666777889998876 68887665 88888999999999999999999999887
Q ss_pred HHHHHHHHHH---HHHHHHhhhh--hHHHHHHHHHHHHhhhhhhhHHHHHHHhhcC--CchhhHHHHHHHHHHhHHHHHh
Q 014047 287 ITCTHIMMIL---TFLLYASALS--GTLYAATVLLGVCYGVIYSLMVPTASELFGL--KHFGLIYNFILLGNPIGALLFS 359 (431)
Q Consensus 287 ~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~lg~~i~~ 359 (431)
..+..+..+ .+........ ...+...++.|++.|..++.....+.+..+. +.++..+|.......+|..+ +
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~ 154 (417)
T 2cfq_A 77 -LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-G 154 (417)
T ss_dssp -HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH-H
Confidence 333332221 1111111110 1112223333443443333323333333221 45677788888888899988 8
Q ss_pred hhHHHHHHhhhhcccCCcccccccccHHHHHHHHHHHHHH
Q 014047 360 GLLAGKLYDAEATKQGSSTCIGAECFRLTFLVLAGVCGLG 399 (431)
Q Consensus 360 p~i~g~i~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~ 399 (431)
|.+++++.+. + |+..|++.++..++.
T Consensus 155 ~~l~~~l~~~-~-------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 155 ASIVGIMFTI-N-------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHHH-C-------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHh-c-------------hhHHHHHHHHHHHHH
Confidence 8899988763 4 899998766654433
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.92 E-value=87 Score=21.92 Aligned_cols=17 Identities=18% Similarity=0.297 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014047 389 FLVLAGVCGLGTILSII 405 (431)
Q Consensus 389 f~~~~~~~~i~~i~~~~ 405 (431)
..+.+++.++++++.++
T Consensus 15 ~gvi~gilliGllllli 31 (79)
T 2knc_B 15 LSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554433
Done!