Query 014049
Match_columns 431
No_of_seqs 314 out of 1939
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 01:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 5.6E-61 1.2E-65 466.2 33.2 358 19-427 1-360 (438)
2 PTZ00363 rab-GDP dissociation 100.0 6E-57 1.3E-61 444.4 38.9 360 19-428 1-362 (443)
3 KOG1439 RAB proteins geranylge 100.0 3.8E-52 8.3E-57 384.4 23.7 354 20-425 2-358 (440)
4 KOG4405 GDP dissociation inhib 100.0 3.2E-50 6.9E-55 370.3 18.8 372 19-423 5-415 (547)
5 COG5044 MRS6 RAB proteins gera 100.0 4.7E-49 1E-53 359.6 23.5 350 20-425 4-357 (434)
6 TIGR02734 crtI_fam phytoene de 100.0 3.4E-33 7.3E-38 285.1 28.0 345 25-428 1-380 (502)
7 COG1233 Phytoene dehydrogenase 100.0 1.8E-32 3.9E-37 276.6 22.1 342 20-426 1-375 (487)
8 TIGR02730 carot_isom carotene 100.0 5.5E-31 1.2E-35 267.7 27.6 348 23-428 1-379 (493)
9 TIGR02733 desat_CrtD C-3',4' d 100.0 6.3E-30 1.4E-34 260.3 29.7 343 23-428 2-379 (492)
10 TIGR00562 proto_IX_ox protopor 99.9 2.1E-25 4.6E-30 225.6 31.0 331 22-424 2-360 (462)
11 PRK07233 hypothetical protein; 99.9 3.7E-25 8.1E-30 222.1 30.5 329 24-426 1-332 (434)
12 PLN02576 protoporphyrinogen ox 99.9 1.2E-24 2.5E-29 222.1 31.4 334 21-424 11-384 (496)
13 PRK11883 protoporphyrinogen ox 99.9 1.6E-24 3.4E-29 218.7 29.5 331 24-428 2-357 (451)
14 PRK12416 protoporphyrinogen ox 99.9 1.6E-24 3.5E-29 219.1 27.5 326 23-423 2-358 (463)
15 PRK07208 hypothetical protein; 99.9 1.4E-23 3.1E-28 213.2 31.8 325 19-417 1-351 (479)
16 PLN02612 phytoene desaturase 99.9 1.3E-23 2.9E-28 215.7 31.7 331 22-422 93-442 (567)
17 TIGR02731 phytoene_desat phyto 99.9 3E-23 6.5E-28 209.3 31.3 293 24-377 1-314 (453)
18 COG1232 HemY Protoporphyrinoge 99.9 1.4E-23 3E-28 204.8 26.2 331 24-429 2-351 (444)
19 KOG4254 Phytoene desaturase [C 99.9 8.1E-24 1.8E-28 198.9 17.5 151 270-425 255-427 (561)
20 TIGR02732 zeta_caro_desat caro 99.9 3.2E-22 7E-27 201.6 26.5 268 24-342 1-289 (474)
21 PLN02487 zeta-carotene desatur 99.9 6E-22 1.3E-26 201.4 27.7 271 21-342 74-365 (569)
22 PLN02268 probable polyamine ox 99.9 7.3E-21 1.6E-25 190.9 21.5 273 24-376 2-291 (435)
23 PLN02676 polyamine oxidase 99.9 3.3E-20 7.2E-25 187.2 23.1 282 21-376 25-325 (487)
24 TIGR03467 HpnE squalene-associ 99.9 5.3E-20 1.2E-24 183.8 24.1 276 36-376 1-287 (419)
25 PLN02529 lysine-specific histo 99.9 5.6E-20 1.2E-24 190.7 24.2 277 21-376 159-446 (738)
26 PLN02568 polyamine oxidase 99.8 1.8E-19 3.9E-24 183.2 24.0 296 18-376 1-339 (539)
27 PLN02328 lysine-specific histo 99.8 3E-19 6.5E-24 186.1 23.3 280 21-376 237-526 (808)
28 COG1231 Monoamine oxidase [Ami 99.8 7E-20 1.5E-24 174.9 16.0 98 271-376 201-299 (450)
29 PLN03000 amine oxidase 99.8 7.1E-18 1.5E-22 175.7 28.6 278 21-376 183-470 (881)
30 PRK13977 myosin-cross-reactive 99.8 5.1E-17 1.1E-21 162.6 24.3 244 18-332 18-287 (576)
31 KOG0029 Amine oxidase [Seconda 99.8 3.8E-17 8.2E-22 163.6 18.3 98 272-376 212-310 (501)
32 PLN02976 amine oxidase 99.7 1.4E-16 3E-21 170.6 22.1 102 270-376 927-1036(1713)
33 KOG1276 Protoporphyrinogen oxi 99.7 3.3E-15 7.1E-20 140.8 24.0 246 22-323 11-293 (491)
34 PF01593 Amino_oxidase: Flavin 99.7 9.7E-17 2.1E-21 160.4 10.3 124 278-411 208-333 (450)
35 COG2907 Predicted NAD/FAD-bind 99.7 8.2E-15 1.8E-19 134.5 20.6 257 22-337 8-274 (447)
36 KOG0685 Flavin-containing amin 99.6 1.3E-13 2.7E-18 132.2 18.3 116 273-390 217-341 (498)
37 COG3349 Uncharacterized conser 99.5 1.7E-13 3.7E-18 133.8 14.3 251 24-331 2-268 (485)
38 PF13450 NAD_binding_8: NAD(P) 99.4 3.9E-13 8.4E-18 97.5 6.3 41 27-67 1-41 (68)
39 TIGR00031 UDP-GALP_mutase UDP- 99.4 4.3E-12 9.3E-17 123.2 14.3 43 23-65 2-44 (377)
40 COG2081 Predicted flavoprotein 99.4 1.3E-11 2.9E-16 116.7 15.7 59 271-332 102-161 (408)
41 PF01266 DAO: FAD dependent ox 99.4 1.7E-11 3.7E-16 119.4 16.1 60 271-333 136-198 (358)
42 PF03486 HI0933_like: HI0933-l 99.3 2.1E-11 4.5E-16 120.0 11.0 60 271-332 100-160 (409)
43 COG0579 Predicted dehydrogenas 99.2 3.6E-10 7.8E-15 110.3 16.2 61 271-333 142-206 (429)
44 COG0562 Glf UDP-galactopyranos 99.2 2.1E-10 4.5E-15 105.0 10.8 99 22-162 1-100 (374)
45 PRK11728 hydroxyglutarate oxid 99.2 7.9E-10 1.7E-14 109.6 16.0 59 271-333 138-199 (393)
46 TIGR03329 Phn_aa_oxid putative 99.1 2.6E-09 5.6E-14 108.0 19.3 57 271-332 172-231 (460)
47 TIGR01377 soxA_mon sarcosine o 99.1 2E-09 4.4E-14 106.1 14.4 58 271-332 134-194 (380)
48 PRK08274 tricarballylate dehyd 99.1 3.5E-09 7.7E-14 107.3 15.9 59 273-333 125-187 (466)
49 PRK12845 3-ketosteroid-delta-1 99.1 9.9E-09 2.1E-13 105.7 18.7 48 15-63 9-56 (564)
50 PRK11259 solA N-methyltryptoph 99.0 7.7E-09 1.7E-13 101.9 14.8 58 271-332 138-198 (376)
51 PTZ00383 malate:quinone oxidor 99.0 1.1E-08 2.4E-13 103.3 15.9 60 271-333 199-268 (497)
52 PRK11101 glpA sn-glycerol-3-ph 99.0 1.1E-08 2.3E-13 105.5 15.6 61 270-333 138-206 (546)
53 PRK06481 fumarate reductase fl 98.9 5.4E-08 1.2E-12 99.5 19.3 42 21-62 60-101 (506)
54 PRK12409 D-amino acid dehydrog 98.9 4.4E-08 9.6E-13 97.7 18.2 40 23-62 2-41 (410)
55 KOG2820 FAD-dependent oxidored 98.9 2.1E-08 4.5E-13 92.6 14.2 58 280-337 154-212 (399)
56 PF00890 FAD_binding_2: FAD bi 98.9 4E-08 8.7E-13 98.2 17.0 54 277-332 139-197 (417)
57 PF01946 Thi4: Thi4 family; PD 98.9 8.4E-10 1.8E-14 96.5 4.2 43 21-63 16-58 (230)
58 PRK00711 D-amino acid dehydrog 98.9 5.2E-08 1.1E-12 97.4 17.3 60 270-332 189-251 (416)
59 PRK01747 mnmC bifunctional tRN 98.9 4.3E-08 9.3E-13 103.6 16.9 58 271-332 397-457 (662)
60 TIGR01373 soxB sarcosine oxida 98.9 1E-07 2.2E-12 95.0 18.2 61 271-333 172-235 (407)
61 COG1635 THI4 Ribulose 1,5-bisp 98.9 1.4E-09 3E-14 94.5 4.0 42 22-63 30-71 (262)
62 COG3380 Predicted NAD/FAD-depe 98.8 5.5E-09 1.2E-13 93.6 6.8 45 24-68 3-47 (331)
63 COG0578 GlpA Glycerol-3-phosph 98.8 7.6E-08 1.6E-12 96.2 13.3 49 17-65 7-55 (532)
64 COG0644 FixC Dehydrogenases (f 98.8 6.4E-09 1.4E-13 103.1 5.4 43 21-63 2-44 (396)
65 PF06100 Strep_67kDa_ant: Stre 98.7 7.6E-07 1.7E-11 87.4 18.1 43 23-65 3-49 (500)
66 TIGR00292 thiazole biosynthesi 98.7 1.6E-08 3.5E-13 93.5 5.2 41 21-61 20-60 (254)
67 PRK04176 ribulose-1,5-biphosph 98.7 1.9E-08 4.1E-13 93.3 5.2 41 21-61 24-64 (257)
68 PRK10157 putative oxidoreducta 98.7 2.1E-08 4.5E-13 100.4 5.7 41 21-61 4-44 (428)
69 TIGR00275 flavoprotein, HI0933 98.6 4.3E-07 9.3E-12 90.1 13.6 65 272-340 97-163 (400)
70 PRK10015 oxidoreductase; Provi 98.6 3.2E-08 7E-13 99.0 5.4 40 21-60 4-43 (429)
71 PRK05249 soluble pyridine nucl 98.6 3.4E-08 7.3E-13 100.1 5.4 46 19-64 2-47 (461)
72 PRK07364 2-octaprenyl-6-methox 98.6 4.1E-08 8.9E-13 98.1 5.9 46 12-57 8-53 (415)
73 PRK06115 dihydrolipoamide dehy 98.6 4.5E-08 9.7E-13 99.1 4.9 43 21-63 2-44 (466)
74 TIGR02485 CobZ_N-term precorri 98.6 7.3E-07 1.6E-11 89.6 13.5 61 272-332 116-177 (432)
75 PRK07121 hypothetical protein; 98.6 7.2E-08 1.6E-12 98.4 6.3 42 21-62 19-60 (492)
76 PLN02172 flavin-containing mon 98.6 6.5E-08 1.4E-12 97.2 5.6 44 20-63 8-51 (461)
77 PRK08010 pyridine nucleotide-d 98.5 7.2E-08 1.6E-12 97.1 5.0 43 21-63 2-45 (441)
78 PF01494 FAD_binding_3: FAD bi 98.5 7.4E-08 1.6E-12 93.6 4.6 36 22-57 1-36 (356)
79 PRK07251 pyridine nucleotide-d 98.5 8.5E-08 1.8E-12 96.5 5.0 42 21-62 2-44 (438)
80 PLN00093 geranylgeranyl diphos 98.5 1.2E-07 2.5E-12 95.3 5.7 41 16-56 33-73 (450)
81 PRK06370 mercuric reductase; V 98.5 1.1E-07 2.4E-12 96.3 5.4 44 19-63 2-45 (463)
82 COG2072 TrkA Predicted flavopr 98.5 1.2E-07 2.5E-12 95.0 5.2 50 19-68 5-55 (443)
83 PRK12266 glpD glycerol-3-phosp 98.5 1.3E-07 2.7E-12 96.8 5.6 44 19-62 3-46 (508)
84 PRK06467 dihydrolipoamide dehy 98.5 1.2E-07 2.7E-12 96.1 5.4 44 20-63 2-45 (471)
85 PRK07494 2-octaprenyl-6-methox 98.5 1.3E-07 2.7E-12 93.7 5.3 40 18-57 3-42 (388)
86 PF12831 FAD_oxidored: FAD dep 98.5 1.2E-07 2.5E-12 94.9 4.9 40 24-63 1-40 (428)
87 PRK06116 glutathione reductase 98.5 1.1E-07 2.4E-12 95.9 4.8 42 21-63 3-44 (450)
88 TIGR02032 GG-red-SF geranylger 98.5 1.4E-07 3E-12 89.4 5.1 37 23-59 1-37 (295)
89 PRK06292 dihydrolipoamide dehy 98.5 1.4E-07 2.9E-12 95.7 5.1 43 20-63 1-43 (460)
90 PTZ00058 glutathione reductase 98.5 2E-07 4.2E-12 95.8 5.9 52 11-63 36-88 (561)
91 TIGR01350 lipoamide_DH dihydro 98.4 1.7E-07 3.7E-12 95.0 5.0 41 22-63 1-41 (461)
92 PRK08013 oxidoreductase; Provi 98.4 1.8E-07 3.8E-12 93.1 5.0 38 20-57 1-38 (400)
93 PRK09126 hypothetical protein; 98.4 1.8E-07 3.9E-12 92.7 5.1 37 22-58 3-39 (392)
94 TIGR01424 gluta_reduc_2 glutat 98.4 1.7E-07 3.7E-12 94.5 4.8 41 22-63 2-42 (446)
95 PRK07818 dihydrolipoamide dehy 98.4 2E-07 4.3E-12 94.5 5.4 44 20-64 2-45 (466)
96 PRK13369 glycerol-3-phosphate 98.4 2.2E-07 4.8E-12 94.9 5.7 44 19-62 3-46 (502)
97 PRK08849 2-octaprenyl-3-methyl 98.4 2.2E-07 4.7E-12 91.9 5.0 35 21-55 2-36 (384)
98 PRK06416 dihydrolipoamide dehy 98.4 2.3E-07 5E-12 94.0 5.1 42 21-63 3-44 (462)
99 PRK05976 dihydrolipoamide dehy 98.4 2.5E-07 5.3E-12 94.0 5.3 43 21-64 3-45 (472)
100 PRK07045 putative monooxygenas 98.4 2.5E-07 5.3E-12 91.6 5.2 38 20-57 3-40 (388)
101 TIGR01421 gluta_reduc_1 glutat 98.4 2.3E-07 5E-12 93.5 5.0 41 22-63 2-42 (450)
102 PRK08773 2-octaprenyl-3-methyl 98.4 2.6E-07 5.7E-12 91.6 5.2 54 279-335 113-167 (392)
103 TIGR03378 glycerol3P_GlpB glyc 98.4 9.7E-06 2.1E-10 79.5 15.9 56 279-336 263-321 (419)
104 PF13738 Pyr_redox_3: Pyridine 98.4 2.2E-07 4.8E-12 83.1 3.9 39 26-64 1-40 (203)
105 TIGR03315 Se_ygfK putative sel 98.4 3.8E-07 8.3E-12 98.3 6.2 43 21-63 536-578 (1012)
106 PRK08850 2-octaprenyl-6-methox 98.4 2.9E-07 6.2E-12 91.7 4.8 35 20-54 2-36 (405)
107 PLN02463 lycopene beta cyclase 98.4 4.7E-07 1E-11 90.6 6.1 48 9-56 15-62 (447)
108 PRK14694 putative mercuric red 98.4 3.7E-07 7.9E-12 92.6 5.3 44 19-63 3-46 (468)
109 PRK06184 hypothetical protein; 98.4 3.8E-07 8.2E-12 93.4 5.5 46 20-65 1-48 (502)
110 TIGR02023 BchP-ChlP geranylger 98.4 4.5E-07 9.7E-12 89.8 5.8 32 23-54 1-32 (388)
111 KOG2844 Dimethylglycine dehydr 98.4 8.8E-06 1.9E-10 81.7 14.6 58 271-331 176-236 (856)
112 PLN02661 Putative thiazole syn 98.4 3.5E-07 7.6E-12 87.2 4.7 40 22-61 92-132 (357)
113 TIGR01292 TRX_reduct thioredox 98.4 3.7E-07 8E-12 86.8 4.9 40 23-63 1-40 (300)
114 PRK05192 tRNA uridine 5-carbox 98.4 3.7E-07 8E-12 93.2 5.1 41 20-60 2-43 (618)
115 TIGR03143 AhpF_homolog putativ 98.4 3.8E-07 8.3E-12 94.3 5.2 42 21-63 3-44 (555)
116 PRK07236 hypothetical protein; 98.4 4.2E-07 9.1E-12 89.9 5.3 37 20-56 4-40 (386)
117 PRK12834 putative FAD-binding 98.4 4.2E-07 9.1E-12 94.0 5.4 42 21-62 3-46 (549)
118 PRK08163 salicylate hydroxylas 98.4 4.1E-07 8.9E-12 90.3 5.1 38 21-58 3-40 (396)
119 PRK12831 putative oxidoreducta 98.4 5.4E-07 1.2E-11 91.1 5.9 44 19-62 137-180 (464)
120 PRK06327 dihydrolipoamide dehy 98.4 4.5E-07 9.8E-12 92.1 5.4 44 21-64 3-52 (475)
121 TIGR02028 ChlP geranylgeranyl 98.3 4.6E-07 9.9E-12 89.9 5.2 39 23-61 1-39 (398)
122 PRK08020 ubiF 2-octaprenyl-3-m 98.3 4E-07 8.7E-12 90.2 4.8 37 20-56 3-39 (391)
123 PRK12837 3-ketosteroid-delta-1 98.3 4.4E-07 9.6E-12 92.9 5.2 41 21-62 6-46 (513)
124 COG3573 Predicted oxidoreducta 98.3 5.2E-07 1.1E-11 83.3 5.0 43 20-62 3-47 (552)
125 PRK13748 putative mercuric red 98.3 4.3E-07 9.4E-12 94.4 5.0 42 21-63 97-138 (561)
126 TIGR01813 flavo_cyto_c flavocy 98.3 5.1E-07 1.1E-11 90.9 5.2 53 279-332 130-186 (439)
127 COG0665 DadA Glycine/D-amino a 98.3 5.5E-07 1.2E-11 89.0 5.3 59 271-333 145-207 (387)
128 COG1148 HdrA Heterodisulfide r 98.3 4.4E-07 9.6E-12 87.7 4.3 44 22-65 124-167 (622)
129 TIGR01988 Ubi-OHases Ubiquinon 98.3 4.6E-07 9.9E-12 89.5 4.7 54 279-335 106-161 (385)
130 PF00732 GMC_oxred_N: GMC oxid 98.3 4.2E-07 9.1E-12 86.5 4.2 39 23-61 1-40 (296)
131 PRK07608 ubiquinone biosynthes 98.3 5.3E-07 1.1E-11 89.2 5.0 37 22-58 5-41 (388)
132 PLN02985 squalene monooxygenas 98.3 7.6E-07 1.6E-11 90.9 6.0 42 15-56 36-77 (514)
133 COG0492 TrxB Thioredoxin reduc 98.3 6.1E-07 1.3E-11 84.9 4.9 46 20-65 1-46 (305)
134 PRK12842 putative succinate de 98.3 7.6E-07 1.6E-11 92.5 6.0 45 19-63 6-50 (574)
135 KOG1399 Flavin-containing mono 98.3 6E-07 1.3E-11 89.0 4.9 45 20-64 4-48 (448)
136 TIGR01790 carotene-cycl lycope 98.3 6.7E-07 1.4E-11 88.5 5.1 37 24-60 1-37 (388)
137 TIGR02053 MerA mercuric reduct 98.3 6.2E-07 1.3E-11 90.9 5.0 40 23-63 1-40 (463)
138 PRK05714 2-octaprenyl-3-methyl 98.3 5.5E-07 1.2E-11 89.7 4.5 53 280-335 113-166 (405)
139 PRK06185 hypothetical protein; 98.3 6.7E-07 1.4E-11 89.1 5.1 37 20-56 4-40 (407)
140 TIGR03364 HpnW_proposed FAD de 98.3 7.4E-07 1.6E-11 87.4 5.3 35 23-57 1-35 (365)
141 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 6.7E-07 1.5E-11 88.5 4.8 35 22-56 2-36 (390)
142 PRK07057 sdhA succinate dehydr 98.3 8.7E-07 1.9E-11 92.2 5.7 47 15-61 5-51 (591)
143 PRK09853 putative selenate red 98.3 1E-06 2.2E-11 94.8 6.3 44 20-63 537-580 (1019)
144 PRK08132 FAD-dependent oxidore 98.3 1.1E-06 2.3E-11 91.1 6.3 56 10-65 8-68 (547)
145 PRK06834 hypothetical protein; 98.3 8.5E-07 1.8E-11 90.2 5.4 46 20-65 1-49 (488)
146 PRK12844 3-ketosteroid-delta-1 98.3 8.1E-07 1.8E-11 91.8 5.3 42 21-62 5-46 (557)
147 PRK05732 2-octaprenyl-6-methox 98.3 7E-07 1.5E-11 88.5 4.6 36 20-55 1-39 (395)
148 PRK06847 hypothetical protein; 98.3 8.8E-07 1.9E-11 87.2 5.3 51 279-332 107-157 (375)
149 PLN02697 lycopene epsilon cycl 98.3 1.1E-06 2.5E-11 89.4 6.2 42 19-60 105-146 (529)
150 PRK14727 putative mercuric red 98.3 7.8E-07 1.7E-11 90.4 4.8 43 21-63 15-57 (479)
151 PRK07190 hypothetical protein; 98.3 9.1E-07 2E-11 89.9 5.3 46 20-65 3-50 (487)
152 TIGR01984 UbiH 2-polyprenyl-6- 98.2 8.3E-07 1.8E-11 87.6 4.5 54 279-335 105-160 (382)
153 PRK12779 putative bifunctional 98.2 1.1E-06 2.3E-11 95.5 5.6 42 21-62 305-346 (944)
154 PRK06126 hypothetical protein; 98.2 1.2E-06 2.5E-11 90.8 5.6 48 18-65 3-52 (545)
155 PRK12835 3-ketosteroid-delta-1 98.2 9.9E-07 2.1E-11 91.6 5.0 41 21-61 10-50 (584)
156 PTZ00052 thioredoxin reductase 98.2 1E-06 2.2E-11 89.9 5.1 50 280-332 223-272 (499)
157 PRK07804 L-aspartate oxidase; 98.2 1.3E-06 2.8E-11 90.1 5.8 41 20-60 14-54 (541)
158 COG1249 Lpd Pyruvate/2-oxoglut 98.2 1.1E-06 2.4E-11 87.5 5.1 45 20-64 2-46 (454)
159 PLN02464 glycerol-3-phosphate 98.2 1E-06 2.2E-11 92.1 5.1 55 279-333 232-291 (627)
160 PTZ00367 squalene epoxidase; P 98.2 1.1E-06 2.4E-11 90.3 5.2 37 19-55 30-66 (567)
161 PRK07843 3-ketosteroid-delta-1 98.2 1.3E-06 2.8E-11 90.3 5.8 43 20-62 5-47 (557)
162 PF04820 Trp_halogenase: Trypt 98.2 1.8E-05 3.9E-10 79.7 13.7 54 279-334 154-208 (454)
163 PRK06617 2-octaprenyl-6-methox 98.2 9.8E-07 2.1E-11 86.9 4.5 34 22-55 1-34 (374)
164 PRK12839 hypothetical protein; 98.2 1.4E-06 3E-11 90.2 5.7 45 19-63 5-49 (572)
165 TIGR01316 gltA glutamate synth 98.2 1.7E-06 3.6E-11 87.2 6.1 44 19-62 130-173 (449)
166 PRK12769 putative oxidoreducta 98.2 1.5E-06 3.2E-11 91.8 5.9 44 20-63 325-368 (654)
167 PRK06753 hypothetical protein; 98.2 1.1E-06 2.5E-11 86.4 4.7 35 24-58 2-36 (373)
168 COG0654 UbiH 2-polyprenyl-6-me 98.2 1.1E-06 2.4E-11 86.9 4.6 55 278-335 103-160 (387)
169 PLN02507 glutathione reductase 98.2 1.4E-06 3E-11 88.9 5.2 52 279-333 244-295 (499)
170 PRK08641 sdhA succinate dehydr 98.2 1.4E-06 3E-11 90.6 5.3 40 21-60 2-41 (589)
171 PRK07803 sdhA succinate dehydr 98.2 1.6E-06 3.5E-11 90.7 5.7 40 20-59 6-45 (626)
172 PRK08243 4-hydroxybenzoate 3-m 98.2 1.3E-06 2.8E-11 86.6 4.7 35 22-56 2-36 (392)
173 PRK12809 putative oxidoreducta 98.2 1.9E-06 4.2E-11 90.5 6.2 48 16-63 304-351 (639)
174 PRK08244 hypothetical protein; 98.2 1.4E-06 3E-11 89.1 4.9 44 22-65 2-47 (493)
175 PRK11445 putative oxidoreducta 98.2 1.3E-06 2.9E-11 85.2 4.6 35 22-57 1-35 (351)
176 TIGR01989 COQ6 Ubiquinone bios 98.2 1.3E-06 2.9E-11 87.8 4.5 34 23-56 1-38 (437)
177 PRK08958 sdhA succinate dehydr 98.2 1.8E-06 3.9E-11 89.7 5.6 42 19-60 4-45 (588)
178 PRK07538 hypothetical protein; 98.2 1.5E-06 3.2E-11 86.8 4.8 35 23-57 1-35 (413)
179 KOG1298 Squalene monooxygenase 98.2 1.6E-06 3.4E-11 81.7 4.4 36 19-54 42-77 (509)
180 PRK07333 2-octaprenyl-6-methox 98.2 1.4E-06 3.1E-11 86.6 4.5 51 279-332 111-161 (403)
181 PRK06452 sdhA succinate dehydr 98.2 1.8E-06 4E-11 89.4 5.4 41 21-61 4-44 (566)
182 TIGR01372 soxA sarcosine oxida 98.2 2E-06 4.2E-11 94.7 5.8 43 21-63 162-204 (985)
183 KOG2614 Kynurenine 3-monooxyge 98.2 2E-06 4.4E-11 82.2 5.0 38 23-60 3-40 (420)
184 PRK12775 putative trifunctiona 98.2 2.3E-06 4.9E-11 93.9 6.0 43 21-63 429-471 (1006)
185 PRK09078 sdhA succinate dehydr 98.2 2.1E-06 4.5E-11 89.5 5.4 43 18-60 8-50 (598)
186 PRK06183 mhpA 3-(3-hydroxyphen 98.2 2.1E-06 4.5E-11 88.8 5.4 40 20-59 8-47 (538)
187 PRK12810 gltD glutamate syntha 98.2 2.9E-06 6.2E-11 86.1 6.1 43 20-62 141-183 (471)
188 PRK12778 putative bifunctional 98.1 2.6E-06 5.6E-11 91.4 5.9 43 20-62 429-471 (752)
189 PRK05257 malate:quinone oxidor 98.1 2.1E-06 4.6E-11 87.1 4.9 44 20-63 3-48 (494)
190 PTZ00139 Succinate dehydrogena 98.1 2.4E-06 5.2E-11 89.2 5.5 41 21-61 28-68 (617)
191 TIGR01320 mal_quin_oxido malat 98.1 1.9E-06 4E-11 87.4 4.5 62 270-333 166-235 (483)
192 PRK06134 putative FAD-binding 98.1 3.1E-06 6.7E-11 88.0 6.2 45 19-63 9-53 (581)
193 PRK07588 hypothetical protein; 98.1 2.1E-06 4.6E-11 85.1 4.7 34 23-56 1-34 (391)
194 PRK06175 L-aspartate oxidase; 98.1 2.2E-06 4.8E-11 85.9 4.9 58 273-332 121-183 (433)
195 TIGR01423 trypano_reduc trypan 98.1 2.2E-06 4.9E-11 86.9 5.0 52 279-332 231-282 (486)
196 PTZ00306 NADH-dependent fumara 98.1 2.7E-06 5.8E-11 95.0 6.0 42 21-62 408-449 (1167)
197 TIGR01789 lycopene_cycl lycope 98.1 2.5E-06 5.3E-11 83.7 5.0 37 24-60 1-39 (370)
198 PF00743 FMO-like: Flavin-bind 98.1 2.2E-06 4.8E-11 87.5 4.7 41 23-63 2-42 (531)
199 PLN02852 ferredoxin-NADP+ redu 98.1 3.3E-06 7.2E-11 85.0 5.8 43 21-63 25-69 (491)
200 PRK05868 hypothetical protein; 98.1 2.7E-06 6E-11 83.6 5.1 35 23-57 2-36 (372)
201 PLN02546 glutathione reductase 98.1 2.6E-06 5.7E-11 87.6 5.1 44 21-64 78-130 (558)
202 PRK02106 choline dehydrogenase 98.1 2.7E-06 5.9E-11 88.2 5.1 38 19-56 2-40 (560)
203 PRK10262 thioredoxin reductase 98.1 2.7E-06 5.9E-11 81.9 4.8 42 21-63 5-46 (321)
204 PRK11749 dihydropyrimidine deh 98.1 3.4E-06 7.3E-11 85.3 5.6 43 20-62 138-180 (457)
205 PRK12843 putative FAD-binding 98.1 4.2E-06 9.2E-11 87.0 6.4 43 21-63 15-57 (578)
206 PLN00128 Succinate dehydrogena 98.1 2.9E-06 6.3E-11 88.7 5.2 41 21-61 49-89 (635)
207 PRK15317 alkyl hydroperoxide r 98.1 3.3E-06 7.2E-11 86.7 5.3 41 20-62 209-249 (517)
208 PRK07573 sdhA succinate dehydr 98.1 3.1E-06 6.8E-11 88.7 5.2 40 21-60 34-73 (640)
209 TIGR01318 gltD_gamma_fam gluta 98.1 4.6E-06 9.9E-11 84.5 6.1 43 21-63 140-182 (467)
210 PRK08626 fumarate reductase fl 98.1 3.4E-06 7.4E-11 88.6 5.2 53 278-332 157-214 (657)
211 PRK06069 sdhA succinate dehydr 98.1 3.6E-06 7.8E-11 87.6 5.2 42 20-61 3-47 (577)
212 PRK06475 salicylate hydroxylas 98.1 3.5E-06 7.7E-11 83.7 4.8 35 23-57 3-37 (400)
213 PRK05945 sdhA succinate dehydr 98.1 3.3E-06 7.1E-11 87.8 4.6 52 279-332 135-191 (575)
214 PRK05335 tRNA (uracil-5-)-meth 98.1 4.2E-06 9E-11 82.0 5.0 37 23-59 3-39 (436)
215 PRK07395 L-aspartate oxidase; 98.1 3.7E-06 8.1E-11 86.7 4.9 41 20-61 7-47 (553)
216 PRK12814 putative NADPH-depend 98.1 4.9E-06 1.1E-10 87.6 5.9 42 21-62 192-233 (652)
217 PTZ00153 lipoamide dehydrogena 98.1 4.1E-06 9E-11 87.4 5.2 42 22-63 116-158 (659)
218 TIGR01812 sdhA_frdA_Gneg succi 98.0 4.2E-06 9.1E-11 87.0 5.0 38 24-61 1-38 (566)
219 PF05834 Lycopene_cycl: Lycope 98.0 4.3E-06 9.3E-11 82.2 4.9 34 24-57 1-36 (374)
220 TIGR02462 pyranose_ox pyranose 98.0 4.5E-06 9.7E-11 85.0 5.0 39 23-61 1-39 (544)
221 PLN02815 L-aspartate oxidase 98.0 4.3E-06 9.3E-11 86.7 4.9 38 22-60 29-66 (594)
222 TIGR03140 AhpF alkyl hydropero 98.0 5E-06 1.1E-10 85.3 5.3 41 20-62 210-250 (515)
223 PRK08294 phenol 2-monooxygenas 98.0 5.4E-06 1.2E-10 86.9 5.5 46 20-65 30-78 (634)
224 PLN02927 antheraxanthin epoxid 98.0 5.6E-06 1.2E-10 86.0 5.3 36 20-55 79-114 (668)
225 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 5E-06 1.1E-10 81.9 4.7 37 24-60 2-38 (433)
226 TIGR03219 salicylate_mono sali 98.0 5.3E-06 1.2E-10 82.9 5.0 35 24-58 2-37 (414)
227 PRK13339 malate:quinone oxidor 98.0 5.2E-06 1.1E-10 83.8 4.8 42 21-62 5-48 (497)
228 PRK06996 hypothetical protein; 98.0 6E-06 1.3E-10 82.0 5.1 41 17-57 6-50 (398)
229 TIGR00551 nadB L-aspartate oxi 98.0 6E-06 1.3E-10 84.2 5.1 52 279-332 128-183 (488)
230 PRK08071 L-aspartate oxidase; 98.0 6.2E-06 1.3E-10 84.4 5.0 40 21-61 2-41 (510)
231 PRK06854 adenylylsulfate reduc 98.0 8.1E-06 1.8E-10 85.2 5.6 39 21-59 10-50 (608)
232 TIGR01317 GOGAT_sm_gam glutama 98.0 1.1E-05 2.3E-10 82.2 6.0 43 21-63 142-184 (485)
233 TIGR01438 TGR thioredoxin and 98.0 8.3E-06 1.8E-10 82.9 5.0 42 22-63 2-51 (484)
234 PF01134 GIDA: Glucose inhibit 97.9 7.4E-06 1.6E-10 79.5 4.1 40 24-63 1-41 (392)
235 PRK06263 sdhA succinate dehydr 97.9 8.4E-06 1.8E-10 84.2 4.8 53 279-332 134-191 (543)
236 COG1053 SdhA Succinate dehydro 97.9 1E-05 2.2E-10 82.9 5.3 46 18-63 2-47 (562)
237 PRK09231 fumarate reductase fl 97.9 8.8E-06 1.9E-10 84.6 4.9 40 22-61 4-45 (582)
238 PRK08401 L-aspartate oxidase; 97.9 9.7E-06 2.1E-10 82.1 5.0 50 279-332 120-169 (466)
239 PRK08205 sdhA succinate dehydr 97.9 1E-05 2.2E-10 84.2 5.2 53 279-332 140-200 (583)
240 PRK08275 putative oxidoreducta 97.9 9.9E-06 2.1E-10 83.9 4.9 53 279-332 137-194 (554)
241 PRK05329 anaerobic glycerol-3- 97.9 1.1E-05 2.5E-10 79.8 4.9 52 280-333 260-313 (422)
242 KOG0399 Glutamate synthase [Am 97.9 1.2E-05 2.5E-10 84.7 5.0 54 9-63 1773-1826(2142)
243 TIGR01176 fum_red_Fp fumarate 97.9 1.1E-05 2.3E-10 83.8 4.8 40 22-61 3-44 (580)
244 COG0493 GltD NADPH-dependent g 97.9 1.5E-05 3.2E-10 79.6 5.4 43 21-63 122-164 (457)
245 COG3075 GlpB Anaerobic glycero 97.9 1.2E-05 2.5E-10 74.5 4.1 60 280-341 259-321 (421)
246 PRK09077 L-aspartate oxidase; 97.9 1.3E-05 2.8E-10 82.6 5.0 40 21-61 7-46 (536)
247 KOG2415 Electron transfer flav 97.9 1.2E-05 2.7E-10 76.5 4.0 44 21-64 75-124 (621)
248 PRK06567 putative bifunctional 97.9 2.1E-05 4.7E-10 83.9 6.1 42 20-61 381-422 (1028)
249 PRK12771 putative glutamate sy 97.8 2.3E-05 5E-10 81.4 6.1 42 21-62 136-177 (564)
250 PRK06912 acoL dihydrolipoamide 97.8 1.9E-05 4E-10 80.0 5.0 39 24-63 2-40 (458)
251 PTZ00188 adrenodoxin reductase 97.8 2.5E-05 5.4E-10 77.9 5.5 42 22-63 39-81 (506)
252 PF07992 Pyr_redox_2: Pyridine 97.8 2.1E-05 4.4E-10 70.1 4.6 33 24-56 1-33 (201)
253 COG2303 BetA Choline dehydroge 97.8 2E-05 4.2E-10 81.1 4.8 35 20-54 5-39 (542)
254 PRK12770 putative glutamate sy 97.8 3E-05 6.4E-10 75.7 5.5 41 22-62 18-58 (352)
255 PF06039 Mqo: Malate:quinone o 97.8 0.0013 2.8E-08 64.6 16.3 61 272-334 170-240 (488)
256 PF00070 Pyr_redox: Pyridine n 97.8 4.3E-05 9.3E-10 57.3 4.9 35 24-58 1-35 (80)
257 KOG1335 Dihydrolipoamide dehyd 97.7 2.6E-05 5.6E-10 73.6 3.9 44 21-64 38-81 (506)
258 TIGR02061 aprA adenosine phosp 97.7 3.4E-05 7.3E-10 80.2 5.0 34 24-57 1-38 (614)
259 PRK07845 flavoprotein disulfid 97.7 3.6E-05 7.7E-10 78.1 5.0 52 279-333 218-269 (466)
260 TIGR00136 gidA glucose-inhibit 97.7 3.9E-05 8.4E-10 78.5 5.1 38 23-60 1-38 (617)
261 PRK13984 putative oxidoreducta 97.7 4.3E-05 9.3E-10 80.2 5.6 42 21-62 282-323 (604)
262 TIGR01811 sdhA_Bsu succinate d 97.7 3.1E-05 6.8E-10 80.7 4.3 36 25-60 1-36 (603)
263 KOG2853 Possible oxidoreductas 97.7 3.5E-05 7.5E-10 71.7 4.0 47 21-67 85-144 (509)
264 PRK07512 L-aspartate oxidase; 97.7 3.7E-05 8E-10 78.8 4.7 52 279-332 136-191 (513)
265 TIGR03452 mycothione_red mycot 97.7 3.8E-05 8.2E-10 77.5 4.6 40 22-64 2-41 (452)
266 PRK07846 mycothione reductase; 97.7 4E-05 8.6E-10 77.4 4.7 40 22-64 1-40 (451)
267 PLN02785 Protein HOTHEAD 97.7 4.7E-05 1E-09 78.9 5.3 36 20-56 53-88 (587)
268 PRK08255 salicylyl-CoA 5-hydro 97.7 3.9E-05 8.4E-10 82.4 4.7 34 24-57 2-37 (765)
269 TIGR01810 betA choline dehydro 97.7 3.6E-05 7.7E-10 79.5 4.2 33 24-56 1-34 (532)
270 PRK13800 putative oxidoreducta 97.7 5.8E-05 1.3E-09 82.5 5.9 36 21-56 12-47 (897)
271 COG4716 Myosin-crossreactive a 97.6 0.00097 2.1E-08 63.1 11.7 45 19-63 19-67 (587)
272 COG0445 GidA Flavin-dependent 97.3 0.00016 3.5E-09 71.6 3.8 35 20-54 2-36 (621)
273 KOG2665 Predicted FAD-dependen 97.3 0.00015 3.3E-09 66.9 3.2 47 17-63 43-91 (453)
274 PRK09897 hypothetical protein; 97.3 0.0003 6.5E-09 71.9 4.9 38 23-60 2-42 (534)
275 KOG2404 Fumarate reductase, fl 97.2 0.00038 8.3E-09 64.4 4.5 39 24-62 11-49 (477)
276 PRK09754 phenylpropionate diox 97.2 0.00048 1E-08 68.4 5.1 50 280-333 187-236 (396)
277 KOG1238 Glucose dehydrogenase/ 97.2 0.00056 1.2E-08 69.5 5.3 39 19-57 54-93 (623)
278 COG0029 NadB Aspartate oxidase 97.1 0.00048 1E-08 67.7 4.3 33 24-57 9-41 (518)
279 PRK09564 coenzyme A disulfide 97.0 0.00061 1.3E-08 68.7 4.4 51 279-333 191-241 (444)
280 KOG0405 Pyridine nucleotide-di 96.9 0.0013 2.7E-08 61.7 5.1 45 20-64 18-62 (478)
281 PRK13512 coenzyme A disulfide 96.9 0.00095 2.1E-08 67.2 4.7 48 279-333 189-236 (438)
282 PTZ00318 NADH dehydrogenase-li 96.9 0.00095 2.1E-08 66.9 4.7 47 280-333 229-275 (424)
283 COG0446 HcaD Uncharacterized N 96.9 0.0009 1.9E-08 66.4 4.5 40 23-62 137-176 (415)
284 KOG4716 Thioredoxin reductase 96.9 0.00089 1.9E-08 62.5 3.9 34 20-53 17-50 (503)
285 KOG2960 Protein involved in th 96.8 0.00043 9.3E-09 60.3 0.8 40 23-62 77-118 (328)
286 KOG2311 NAD/FAD-utilizing prot 96.8 0.0015 3.2E-08 63.7 4.4 35 20-54 26-60 (679)
287 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0013 2.9E-08 61.2 3.8 39 23-61 4-42 (439)
288 COG2509 Uncharacterized FAD-de 96.7 0.0045 9.8E-08 60.3 7.4 57 278-336 172-228 (486)
289 TIGR02352 thiamin_ThiO glycine 96.7 0.0057 1.2E-07 59.0 8.2 60 271-333 126-188 (337)
290 PF13454 NAD_binding_9: FAD-NA 96.5 0.003 6.5E-08 53.9 3.9 32 26-58 1-37 (156)
291 KOG2852 Possible oxidoreductas 96.5 0.0017 3.8E-08 59.3 2.4 42 21-62 9-56 (380)
292 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0035 7.6E-08 55.0 4.0 33 24-56 2-34 (185)
293 KOG3855 Monooxygenase involved 96.3 0.0042 9.1E-08 59.7 4.4 39 21-59 35-79 (481)
294 COG1252 Ndh NADH dehydrogenase 96.2 0.0059 1.3E-07 59.8 4.8 46 279-331 209-255 (405)
295 TIGR03169 Nterm_to_SelD pyridi 96.2 0.005 1.1E-07 60.3 4.4 49 280-335 192-240 (364)
296 KOG1800 Ferredoxin/adrenodoxin 96.2 0.0064 1.4E-07 57.9 4.5 42 22-63 20-63 (468)
297 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0074 1.6E-07 51.5 4.1 32 24-55 1-32 (157)
298 PRK09754 phenylpropionate diox 96.0 0.0078 1.7E-07 59.7 4.6 39 23-61 145-183 (396)
299 TIGR03197 MnmC_Cterm tRNA U-34 95.8 0.026 5.6E-07 55.7 7.5 58 271-332 124-184 (381)
300 PF02737 3HCDH_N: 3-hydroxyacy 95.8 0.011 2.5E-07 51.6 4.4 33 24-56 1-33 (180)
301 COG4529 Uncharacterized protei 95.8 0.012 2.6E-07 58.1 4.7 40 22-62 1-44 (474)
302 COG3634 AhpF Alkyl hydroperoxi 95.8 0.0059 1.3E-07 57.4 2.4 40 21-62 210-249 (520)
303 KOG0042 Glycerol-3-phosphate d 95.7 0.0053 1.1E-07 61.0 2.0 41 22-62 67-107 (680)
304 PRK01438 murD UDP-N-acetylmura 95.7 0.015 3.2E-07 59.3 5.5 34 23-56 17-50 (480)
305 PF13434 K_oxygenase: L-lysine 95.7 0.0075 1.6E-07 58.4 3.0 35 22-56 2-37 (341)
306 PRK04965 NADH:flavorubredoxin 95.7 0.015 3.2E-07 57.4 4.9 51 280-333 184-234 (377)
307 PRK02705 murD UDP-N-acetylmura 95.5 0.015 3.3E-07 58.9 4.5 34 24-57 2-35 (459)
308 PRK04965 NADH:flavorubredoxin 95.5 0.018 3.8E-07 56.8 4.8 38 23-60 142-179 (377)
309 PF07156 Prenylcys_lyase: Pren 95.4 0.1 2.2E-06 50.9 9.7 112 206-334 68-183 (368)
310 PRK07251 pyridine nucleotide-d 95.4 0.021 4.6E-07 57.4 5.1 38 23-60 158-195 (438)
311 PRK06249 2-dehydropantoate 2-r 95.4 0.023 5E-07 54.5 5.0 36 20-55 3-38 (313)
312 PRK06129 3-hydroxyacyl-CoA deh 95.3 0.017 3.7E-07 55.2 4.0 33 24-56 4-36 (308)
313 PRK05976 dihydrolipoamide dehy 95.3 0.02 4.4E-07 58.2 4.6 37 23-59 181-217 (472)
314 TIGR01350 lipoamide_DH dihydro 95.2 0.025 5.3E-07 57.4 4.8 37 23-59 171-207 (461)
315 PF02558 ApbA: Ketopantoate re 95.2 0.028 6.2E-07 47.4 4.4 31 25-55 1-31 (151)
316 PRK14106 murD UDP-N-acetylmura 95.1 0.028 6.1E-07 56.8 5.1 35 21-55 4-38 (450)
317 PRK14989 nitrite reductase sub 95.1 0.027 5.9E-07 61.2 5.0 54 280-334 188-241 (847)
318 TIGR02053 MerA mercuric reduct 95.0 0.028 6.2E-07 57.0 4.7 38 23-60 167-204 (463)
319 TIGR03862 flavo_PP4765 unchara 95.0 0.15 3.2E-06 50.0 9.3 65 271-340 77-144 (376)
320 PRK11064 wecC UDP-N-acetyl-D-m 95.0 0.027 5.9E-07 56.1 4.3 34 23-56 4-37 (415)
321 PRK06370 mercuric reductase; V 94.9 0.034 7.3E-07 56.5 5.0 38 23-60 172-209 (463)
322 TIGR01421 gluta_reduc_1 glutat 94.9 0.033 7.1E-07 56.3 4.7 37 23-59 167-203 (450)
323 KOG0404 Thioredoxin reductase 94.9 0.035 7.7E-07 49.1 4.2 43 22-64 8-54 (322)
324 PF13738 Pyr_redox_3: Pyridine 94.9 0.071 1.5E-06 47.2 6.4 52 279-333 82-133 (203)
325 PRK08293 3-hydroxybutyryl-CoA 94.8 0.035 7.5E-07 52.5 4.5 34 23-56 4-37 (287)
326 PRK06467 dihydrolipoamide dehy 94.8 0.035 7.6E-07 56.4 4.8 38 23-60 175-212 (471)
327 PRK06416 dihydrolipoamide dehy 94.8 0.036 7.7E-07 56.2 4.7 38 23-60 173-210 (462)
328 PRK06912 acoL dihydrolipoamide 94.8 0.038 8.1E-07 56.0 4.8 37 23-59 171-207 (458)
329 PRK09260 3-hydroxybutyryl-CoA 94.7 0.032 7E-07 52.8 4.0 33 24-56 3-35 (288)
330 PRK07846 mycothione reductase; 94.7 0.039 8.4E-07 55.8 4.7 37 23-59 167-203 (451)
331 TIGR02374 nitri_red_nirB nitri 94.7 0.031 6.8E-07 60.5 4.3 52 280-334 183-234 (785)
332 PRK07819 3-hydroxybutyryl-CoA 94.7 0.04 8.6E-07 52.0 4.5 34 24-57 7-40 (286)
333 PRK06115 dihydrolipoamide dehy 94.7 0.04 8.6E-07 56.0 4.8 38 23-60 175-212 (466)
334 PRK13512 coenzyme A disulfide 94.7 0.038 8.1E-07 55.7 4.6 38 23-60 149-186 (438)
335 PRK07530 3-hydroxybutyryl-CoA 94.7 0.045 9.8E-07 51.9 4.9 34 23-56 5-38 (292)
336 PRK07818 dihydrolipoamide dehy 94.7 0.039 8.5E-07 56.0 4.7 38 23-60 173-210 (466)
337 PRK06292 dihydrolipoamide dehy 94.7 0.043 9.4E-07 55.6 5.0 38 23-60 170-207 (460)
338 PRK05249 soluble pyridine nucl 94.6 0.049 1.1E-06 55.2 5.1 38 23-60 176-213 (461)
339 TIGR03385 CoA_CoA_reduc CoA-di 94.5 0.045 9.8E-07 54.9 4.7 36 23-58 138-173 (427)
340 COG1004 Ugd Predicted UDP-gluc 94.5 0.041 8.9E-07 53.1 4.0 33 24-56 2-34 (414)
341 COG0569 TrkA K+ transport syst 94.4 0.047 1E-06 49.5 4.1 33 24-56 2-34 (225)
342 PRK05808 3-hydroxybutyryl-CoA 94.3 0.051 1.1E-06 51.2 4.3 34 23-56 4-37 (282)
343 PRK06327 dihydrolipoamide dehy 94.3 0.059 1.3E-06 54.9 5.0 38 23-60 184-221 (475)
344 PRK04148 hypothetical protein; 94.3 0.042 9.2E-07 45.1 3.1 33 23-56 18-50 (134)
345 TIGR02374 nitri_red_nirB nitri 94.2 0.051 1.1E-06 58.8 4.6 37 23-59 141-177 (785)
346 TIGR03452 mycothione_red mycot 94.2 0.061 1.3E-06 54.4 4.9 37 23-59 170-206 (452)
347 PRK07066 3-hydroxybutyryl-CoA 94.2 0.056 1.2E-06 51.7 4.2 34 23-56 8-41 (321)
348 TIGR03377 glycerol3P_GlpA glyc 94.1 0.15 3.3E-06 52.4 7.7 59 271-332 118-184 (516)
349 TIGR03140 AhpF alkyl hydropero 94.0 0.062 1.3E-06 55.3 4.4 36 23-58 353-388 (515)
350 TIGR01320 mal_quin_oxido malat 93.9 0.18 3.9E-06 51.4 7.6 41 23-63 1-43 (483)
351 COG0686 Ald Alanine dehydrogen 93.9 0.045 9.7E-07 50.9 2.9 43 23-65 169-219 (371)
352 PRK06035 3-hydroxyacyl-CoA deh 93.9 0.07 1.5E-06 50.5 4.3 34 23-56 4-37 (291)
353 PRK07845 flavoprotein disulfid 93.8 0.084 1.8E-06 53.6 5.1 39 23-61 178-216 (466)
354 PRK09564 coenzyme A disulfide 93.8 0.08 1.7E-06 53.4 4.8 37 23-59 150-186 (444)
355 PRK05257 malate:quinone oxidor 93.8 0.17 3.7E-06 51.6 7.2 62 270-333 171-241 (494)
356 PRK06522 2-dehydropantoate 2-r 93.8 0.074 1.6E-06 50.6 4.3 32 24-55 2-33 (304)
357 TIGR01424 gluta_reduc_2 glutat 93.7 0.082 1.8E-06 53.4 4.7 37 23-59 167-203 (446)
358 PTZ00153 lipoamide dehydrogena 93.7 0.08 1.7E-06 55.8 4.6 38 23-60 313-350 (659)
359 PTZ00058 glutathione reductase 93.7 0.078 1.7E-06 55.0 4.5 37 23-59 238-274 (561)
360 COG1249 Lpd Pyruvate/2-oxoglut 93.7 0.089 1.9E-06 52.8 4.8 38 23-60 174-211 (454)
361 TIGR03026 NDP-sugDHase nucleot 93.6 0.072 1.6E-06 53.1 4.0 33 24-56 2-34 (411)
362 PRK14989 nitrite reductase sub 93.6 0.079 1.7E-06 57.6 4.6 36 24-59 147-182 (847)
363 TIGR01316 gltA glutamate synth 93.6 0.084 1.8E-06 53.3 4.4 34 23-56 273-306 (449)
364 PRK06134 putative FAD-binding 93.5 0.24 5.2E-06 51.8 7.9 52 279-332 217-272 (581)
365 PLN02545 3-hydroxybutyryl-CoA 93.5 0.096 2.1E-06 49.7 4.5 34 23-56 5-38 (295)
366 cd01080 NAD_bind_m-THF_DH_Cycl 93.5 0.13 2.8E-06 44.4 4.8 34 21-54 43-77 (168)
367 PRK08229 2-dehydropantoate 2-r 93.4 0.085 1.8E-06 51.1 4.1 32 24-55 4-35 (341)
368 PRK10262 thioredoxin reductase 93.4 0.1 2.2E-06 50.2 4.5 35 23-57 147-181 (321)
369 PRK15317 alkyl hydroperoxide r 93.4 0.089 1.9E-06 54.2 4.4 35 23-57 352-386 (517)
370 PRK05708 2-dehydropantoate 2-r 93.4 0.1 2.3E-06 49.7 4.5 33 23-55 3-35 (305)
371 cd05292 LDH_2 A subgroup of L- 93.4 0.1 2.2E-06 49.8 4.5 36 24-59 2-40 (308)
372 PLN02507 glutathione reductase 93.4 0.098 2.1E-06 53.6 4.6 36 23-58 204-239 (499)
373 PRK06130 3-hydroxybutyryl-CoA 93.3 0.11 2.3E-06 49.8 4.6 33 23-55 5-37 (311)
374 PRK12921 2-dehydropantoate 2-r 93.3 0.097 2.1E-06 49.8 4.3 30 24-53 2-31 (305)
375 PF01262 AlaDh_PNT_C: Alanine 93.3 0.12 2.6E-06 44.6 4.4 33 23-55 21-53 (168)
376 TIGR03143 AhpF_homolog putativ 93.2 0.097 2.1E-06 54.4 4.4 35 23-57 144-178 (555)
377 PRK12770 putative glutamate sy 93.2 0.1 2.2E-06 50.9 4.3 34 23-56 173-207 (352)
378 PF01134 GIDA: Glucose inhibit 93.2 0.36 7.7E-06 47.3 7.9 56 278-335 94-150 (392)
379 PRK06116 glutathione reductase 93.1 0.12 2.5E-06 52.3 4.7 36 23-58 168-203 (450)
380 PRK14618 NAD(P)H-dependent gly 93.1 0.13 2.9E-06 49.5 4.9 33 23-55 5-37 (328)
381 PRK08010 pyridine nucleotide-d 93.1 0.14 3E-06 51.6 5.2 38 23-60 159-196 (441)
382 PRK07121 hypothetical protein; 93.0 0.3 6.5E-06 50.0 7.6 55 277-332 175-233 (492)
383 PLN02353 probable UDP-glucose 93.0 0.11 2.3E-06 52.6 4.2 34 23-56 2-37 (473)
384 TIGR01763 MalateDH_bact malate 92.9 0.15 3.2E-06 48.6 4.8 33 24-56 3-36 (305)
385 PRK12831 putative oxidoreducta 92.8 0.13 2.7E-06 52.3 4.4 34 23-56 282-315 (464)
386 PRK00094 gpsA NAD(P)H-dependen 92.8 0.14 3E-06 49.2 4.6 32 24-55 3-34 (325)
387 PRK12843 putative FAD-binding 92.8 0.36 7.8E-06 50.5 7.9 52 279-332 221-276 (578)
388 PF03446 NAD_binding_2: NAD bi 92.8 0.16 3.4E-06 43.6 4.4 33 23-55 2-34 (163)
389 PLN02546 glutathione reductase 92.8 0.14 2.9E-06 53.2 4.6 37 23-59 253-289 (558)
390 PRK14619 NAD(P)H-dependent gly 92.6 0.16 3.5E-06 48.5 4.6 34 23-56 5-38 (308)
391 PRK13748 putative mercuric red 92.6 0.15 3.3E-06 53.1 4.8 34 23-56 271-304 (561)
392 KOG3923 D-aspartate oxidase [A 92.6 0.13 2.8E-06 47.6 3.7 33 22-54 3-42 (342)
393 PRK14694 putative mercuric red 92.5 0.17 3.6E-06 51.5 4.9 34 23-56 179-212 (468)
394 TIGR01292 TRX_reduct thioredox 92.5 0.15 3.3E-06 48.1 4.3 35 23-57 142-176 (300)
395 TIGR01470 cysG_Nterm siroheme 92.5 0.17 3.7E-06 45.2 4.3 35 21-55 8-42 (205)
396 COG3486 IucD Lysine/ornithine 92.4 0.16 3.5E-06 49.2 4.3 39 19-57 2-41 (436)
397 PRK05329 anaerobic glycerol-3- 92.4 0.51 1.1E-05 47.1 7.9 34 22-55 2-35 (422)
398 PF13241 NAD_binding_7: Putati 92.3 0.11 2.4E-06 40.8 2.5 37 19-55 4-40 (103)
399 PRK07417 arogenate dehydrogena 92.2 0.16 3.5E-06 47.8 4.1 32 24-55 2-33 (279)
400 PRK01710 murD UDP-N-acetylmura 92.2 0.17 3.7E-06 51.3 4.5 32 24-55 16-47 (458)
401 PF13478 XdhC_C: XdhC Rossmann 92.2 0.18 3.9E-06 41.8 3.8 32 25-56 1-32 (136)
402 TIGR00518 alaDH alanine dehydr 92.1 0.18 4E-06 49.4 4.4 33 23-55 168-200 (370)
403 PRK14727 putative mercuric red 92.1 0.2 4.4E-06 51.0 4.9 33 23-55 189-221 (479)
404 PRK06718 precorrin-2 dehydroge 92.1 0.2 4.4E-06 44.6 4.3 36 19-54 7-42 (202)
405 PRK15057 UDP-glucose 6-dehydro 92.1 0.17 3.8E-06 49.9 4.2 33 24-57 2-34 (388)
406 PRK08773 2-octaprenyl-3-methyl 92.1 0.58 1.3E-05 46.2 8.1 38 20-57 4-41 (392)
407 PRK06719 precorrin-2 dehydroge 92.1 0.21 4.6E-06 42.5 4.2 34 19-52 10-43 (157)
408 TIGR01816 sdhA_forward succina 92.0 0.7 1.5E-05 48.1 8.9 58 273-332 112-175 (565)
409 PRK04308 murD UDP-N-acetylmura 92.0 0.24 5.2E-06 50.0 5.3 35 23-57 6-40 (445)
410 PRK13339 malate:quinone oxidor 92.0 0.55 1.2E-05 47.9 7.7 62 270-333 172-242 (497)
411 PRK14620 NAD(P)H-dependent gly 91.9 0.2 4.4E-06 48.2 4.4 32 24-55 2-33 (326)
412 COG1748 LYS9 Saccharopine dehy 91.9 0.21 4.5E-06 48.8 4.4 45 23-67 2-55 (389)
413 PF10727 Rossmann-like: Rossma 91.8 0.13 2.9E-06 42.0 2.6 39 18-56 6-44 (127)
414 PTZ00052 thioredoxin reductase 91.8 0.21 4.6E-06 51.2 4.7 31 24-54 184-214 (499)
415 PF02254 TrkA_N: TrkA-N domain 91.8 0.27 5.7E-06 39.3 4.4 32 25-56 1-32 (116)
416 PRK10157 putative oxidoreducta 91.8 0.53 1.1E-05 47.2 7.4 50 280-332 109-158 (428)
417 TIGR01438 TGR thioredoxin and 91.7 0.2 4.2E-06 51.2 4.3 32 23-54 181-212 (484)
418 PRK02472 murD UDP-N-acetylmura 91.7 0.24 5.2E-06 50.0 4.8 33 23-55 6-38 (447)
419 PRK04690 murD UDP-N-acetylmura 91.7 0.2 4.4E-06 50.8 4.3 34 23-56 9-42 (468)
420 PRK03803 murD UDP-N-acetylmura 91.6 0.25 5.3E-06 49.9 4.8 39 17-55 1-39 (448)
421 PF00070 Pyr_redox: Pyridine n 91.6 0.58 1.3E-05 34.6 5.7 42 278-322 39-80 (80)
422 PRK07531 bifunctional 3-hydrox 91.6 0.23 4.9E-06 50.8 4.6 32 24-55 6-37 (495)
423 PRK12835 3-ketosteroid-delta-1 91.4 0.59 1.3E-05 48.9 7.6 54 278-332 212-269 (584)
424 TIGR01915 npdG NADPH-dependent 91.4 0.26 5.5E-06 44.6 4.3 32 24-55 2-34 (219)
425 COG2509 Uncharacterized FAD-de 91.4 0.19 4.1E-06 49.4 3.5 45 18-62 14-63 (486)
426 PRK06847 hypothetical protein; 91.3 0.72 1.6E-05 45.2 7.8 37 21-57 3-39 (375)
427 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.3 0.21 4.6E-06 51.0 4.0 34 23-56 6-39 (503)
428 COG0771 MurD UDP-N-acetylmuram 91.3 0.24 5.2E-06 49.4 4.2 36 22-57 7-42 (448)
429 PRK11749 dihydropyrimidine deh 91.3 0.25 5.3E-06 50.1 4.4 34 23-56 274-308 (457)
430 PRK00141 murD UDP-N-acetylmura 91.3 0.28 6.1E-06 49.9 4.8 43 11-55 6-48 (473)
431 PRK07333 2-octaprenyl-6-methox 91.3 0.72 1.6E-05 45.7 7.7 35 22-56 1-37 (403)
432 PRK04176 ribulose-1,5-biphosph 91.2 0.7 1.5E-05 42.9 7.1 53 279-332 104-167 (257)
433 cd01075 NAD_bind_Leu_Phe_Val_D 91.2 0.4 8.6E-06 42.7 5.2 35 21-55 27-61 (200)
434 TIGR01813 flavo_cyto_c flavocy 91.2 0.68 1.5E-05 46.5 7.6 39 24-62 1-40 (439)
435 PRK11199 tyrA bifunctional cho 91.2 0.3 6.4E-06 48.1 4.8 35 21-55 97-132 (374)
436 PRK03369 murD UDP-N-acetylmura 91.1 0.25 5.5E-06 50.4 4.4 33 23-55 13-45 (488)
437 PRK12844 3-ketosteroid-delta-1 90.9 0.73 1.6E-05 47.9 7.6 53 278-332 207-263 (557)
438 PTZ00318 NADH dehydrogenase-li 90.8 0.31 6.8E-06 48.8 4.7 37 24-60 175-225 (424)
439 PRK07045 putative monooxygenas 90.8 0.84 1.8E-05 45.0 7.7 55 280-335 107-163 (388)
440 COG0654 UbiH 2-polyprenyl-6-me 90.8 0.69 1.5E-05 45.7 7.0 33 22-54 2-34 (387)
441 TIGR01984 UbiH 2-polyprenyl-6- 90.7 0.84 1.8E-05 44.8 7.6 34 24-57 1-35 (382)
442 PRK08268 3-hydroxy-acyl-CoA de 90.7 0.3 6.4E-06 50.1 4.4 34 23-56 8-41 (507)
443 PRK12842 putative succinate de 90.7 0.71 1.5E-05 48.3 7.3 52 279-332 214-269 (574)
444 TIGR01505 tartro_sem_red 2-hyd 90.7 0.29 6.2E-06 46.3 4.0 32 24-55 1-32 (291)
445 PF01488 Shikimate_DH: Shikima 90.6 0.44 9.6E-06 39.4 4.7 33 22-54 12-45 (135)
446 TIGR02354 thiF_fam2 thiamine b 90.6 0.39 8.5E-06 42.7 4.6 33 22-54 21-54 (200)
447 TIGR01988 Ubi-OHases Ubiquinon 90.6 0.92 2E-05 44.5 7.7 35 24-58 1-35 (385)
448 KOG2304 3-hydroxyacyl-CoA dehy 90.5 0.31 6.8E-06 43.3 3.7 35 22-56 11-45 (298)
449 TIGR00292 thiazole biosynthesi 90.3 1.1 2.4E-05 41.5 7.4 52 279-332 100-164 (254)
450 cd05291 HicDH_like L-2-hydroxy 90.3 0.38 8.1E-06 45.9 4.5 33 24-56 2-36 (306)
451 PRK11730 fadB multifunctional 90.2 0.28 6.1E-06 52.5 3.9 34 23-56 314-347 (715)
452 PRK07843 3-ketosteroid-delta-1 90.2 0.98 2.1E-05 47.0 7.8 53 278-332 207-263 (557)
453 PRK06175 L-aspartate oxidase; 90.1 1 2.2E-05 45.3 7.6 39 21-60 3-41 (433)
454 PRK09424 pntA NAD(P) transhydr 90.1 0.32 7E-06 49.5 4.0 33 23-55 166-198 (509)
455 PRK15461 NADH-dependent gamma- 90.1 0.35 7.5E-06 45.9 4.1 32 24-55 3-34 (296)
456 PRK05714 2-octaprenyl-3-methyl 90.0 1.1 2.5E-05 44.4 7.9 35 22-56 2-36 (405)
457 PRK12778 putative bifunctional 90.0 0.35 7.5E-06 52.3 4.4 34 23-56 571-605 (752)
458 COG0665 DadA Glycine/D-amino a 89.9 1.2 2.6E-05 43.7 8.0 42 20-61 2-43 (387)
459 PRK10015 oxidoreductase; Provi 89.9 1.1 2.3E-05 45.1 7.6 50 280-332 109-158 (429)
460 COG1250 FadB 3-hydroxyacyl-CoA 89.8 0.42 9.1E-06 45.2 4.3 32 23-54 4-35 (307)
461 PRK06834 hypothetical protein; 89.8 1.2 2.6E-05 45.5 7.9 54 279-335 100-154 (488)
462 TIGR02032 GG-red-SF geranylger 89.8 1.3 2.8E-05 41.5 7.7 51 279-332 91-142 (295)
463 cd01339 LDH-like_MDH L-lactate 89.7 0.38 8.2E-06 45.8 4.0 31 25-55 1-32 (300)
464 PRK06223 malate dehydrogenase; 89.7 0.47 1E-05 45.3 4.6 34 23-56 3-37 (307)
465 PRK00683 murD UDP-N-acetylmura 89.6 0.39 8.4E-06 48.1 4.2 34 23-56 4-37 (418)
466 KOG1336 Monodehydroascorbate/f 89.6 0.87 1.9E-05 45.1 6.3 53 279-332 255-307 (478)
467 PLN02464 glycerol-3-phosphate 89.6 1.4 3E-05 46.6 8.3 40 21-60 70-109 (627)
468 TIGR02437 FadB fatty oxidation 89.6 0.39 8.5E-06 51.3 4.3 34 23-56 314-347 (714)
469 PLN02695 GDP-D-mannose-3',5'-e 89.5 0.63 1.4E-05 45.7 5.5 36 20-55 19-55 (370)
470 PRK15116 sulfur acceptor prote 89.4 0.55 1.2E-05 43.7 4.6 40 22-61 30-70 (268)
471 PRK02006 murD UDP-N-acetylmura 89.4 0.47 1E-05 48.6 4.6 33 23-55 8-40 (498)
472 PRK00421 murC UDP-N-acetylmura 89.3 0.43 9.2E-06 48.4 4.3 34 23-56 8-42 (461)
473 PRK01368 murD UDP-N-acetylmura 89.3 0.4 8.6E-06 48.5 4.0 32 23-55 7-38 (454)
474 cd05191 NAD_bind_amino_acid_DH 89.3 0.85 1.8E-05 34.3 4.9 32 22-53 23-55 (86)
475 cd00401 AdoHcyase S-adenosyl-L 89.2 0.47 1E-05 47.0 4.3 34 23-56 203-236 (413)
476 TIGR01812 sdhA_frdA_Gneg succi 89.2 1.4 3.1E-05 45.9 8.2 52 279-332 129-185 (566)
477 PRK05675 sdhA succinate dehydr 89.2 1.6 3.5E-05 45.5 8.5 60 272-332 118-183 (570)
478 PTZ00142 6-phosphogluconate de 89.1 0.41 9E-06 48.4 3.9 34 23-56 2-35 (470)
479 PRK11559 garR tartronate semia 89.1 0.5 1.1E-05 44.8 4.3 32 24-55 4-35 (296)
480 PLN02657 3,8-divinyl protochlo 89.0 0.88 1.9E-05 45.0 6.2 43 13-55 51-94 (390)
481 PRK12839 hypothetical protein; 89.0 1.2 2.6E-05 46.5 7.3 53 279-332 214-270 (572)
482 PRK08306 dipicolinate synthase 89.0 0.54 1.2E-05 44.6 4.4 34 22-55 152-185 (296)
483 PRK06452 sdhA succinate dehydr 89.0 1.3 2.8E-05 46.2 7.6 52 279-332 136-192 (566)
484 COG2085 Predicted dinucleotide 88.9 0.5 1.1E-05 41.8 3.8 31 24-54 3-33 (211)
485 TIGR02964 xanthine_xdhC xanthi 88.8 0.59 1.3E-05 43.0 4.4 35 22-56 100-134 (246)
486 PTZ00082 L-lactate dehydrogena 88.8 0.69 1.5E-05 44.4 5.0 36 22-57 6-42 (321)
487 PRK07573 sdhA succinate dehydr 88.7 1.4 3.1E-05 46.6 7.8 48 283-332 174-226 (640)
488 PRK07831 short chain dehydroge 88.6 0.84 1.8E-05 42.2 5.4 34 22-55 17-52 (262)
489 TIGR02441 fa_ox_alpha_mit fatt 88.6 0.45 9.8E-06 51.1 4.0 34 23-56 336-369 (737)
490 PLN02256 arogenate dehydrogena 88.5 0.66 1.4E-05 44.2 4.6 34 22-55 36-69 (304)
491 PRK07588 hypothetical protein; 88.5 1.2 2.6E-05 43.9 6.7 52 279-334 103-155 (391)
492 cd01065 NAD_bind_Shikimate_DH 88.4 0.85 1.8E-05 38.4 4.9 34 22-55 19-53 (155)
493 COG1893 ApbA Ketopantoate redu 88.3 0.48 1E-05 45.2 3.6 33 24-56 2-34 (307)
494 PRK07494 2-octaprenyl-6-methox 88.3 1.7 3.7E-05 42.8 7.7 54 279-335 111-165 (388)
495 PRK07190 hypothetical protein; 88.2 1.5 3.3E-05 44.8 7.4 54 279-335 109-163 (487)
496 COG2072 TrkA Predicted flavopr 88.2 0.75 1.6E-05 46.3 5.1 36 23-58 176-211 (443)
497 PRK12266 glpD glycerol-3-phosp 88.2 1.4 3E-05 45.3 7.2 59 271-332 145-210 (508)
498 PRK03806 murD UDP-N-acetylmura 88.1 0.68 1.5E-05 46.6 4.8 34 23-56 7-40 (438)
499 PLN02572 UDP-sulfoquinovose sy 88.0 1.1 2.3E-05 45.2 6.1 44 10-53 35-79 (442)
500 PRK05945 sdhA succinate dehydr 88.0 1.9 4.1E-05 45.1 8.1 40 21-60 2-43 (575)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=5.6e-61 Score=466.20 Aligned_cols=358 Identities=35% Similarity=0.635 Sum_probs=277.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (431)
|+++|||||+|||+.+++.|++|+++|++|+|+|+|++|||.++|++++++..|+...... ..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~ 63 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP 63 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence 4678999999999999999999999999999999999999999999999988887543110 00
Q ss_pred ccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (431)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (431)
+.+ +..|+|++||. |++++++++++++|.++++.+|+||+.++..|++. +|++.++|+++.++|+++.+++.+||++
T Consensus 64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l 140 (438)
T PF00996_consen 64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL 140 (438)
T ss_dssp HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence 112 35789999997 99999999999999999999999999999999886 8899999999999999999999999999
Q ss_pred HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (431)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (431)
|+|++++..+.+..+..+. ..+....++.+++++|++++.+++++.|++++..-+... .-++.+++.++.+|+
T Consensus 141 mkFl~~v~~~~~~~~~~~~----~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~---~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 141 MKFLKFVANYEEDDPSTHK----GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYL---TEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHGCTTBGGGST----TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGG---GSBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcchhh----ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccc---cccHHHHHHHHHHHH
Confidence 9999999877543221111 113446899999999999999999999998886422211 125678999999999
Q ss_pred hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (431)
Q Consensus 259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~ 338 (431)
.|+++||++ |++||+||.|+|+|+|||+++++||+++||++|++|..++ +|++++|. ++|++++|++||++|.+.
T Consensus 214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~- 288 (438)
T PF00996_consen 214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL- 288 (438)
T ss_dssp HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence 999999975 6999999999999999999999999999999999999973 68899998 489999999999998875
Q ss_pred CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCC--CCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (431)
Q Consensus 339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~ 416 (431)
+. +....++++|+++|+++|+++. ....+|+||+.+.+. .+.|||.+.|+++++||+|+
T Consensus 289 p~-----------------~v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~~--~~dIyv~~~ss~~~~CP~G~ 349 (438)
T PF00996_consen 289 PE-----------------KVKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVGR--KSDIYVLQLSSSTGVCPKGQ 349 (438)
T ss_dssp GC-----------------GEEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCTS--SS-EEEEEEEGGGTSS-TT-
T ss_pred cc-----------------cccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccCC--CCCeEEEEECCCccccCCCc
Confidence 21 1113468999999999999753 356788899887665 56799999999999999999
Q ss_pred EEEEEEcCCCC
Q 014049 417 VSLDLLSPLPH 427 (431)
Q Consensus 417 ~~~~i~~~~p~ 427 (431)
+++|++|.++.
T Consensus 350 yi~~~St~~~t 360 (438)
T PF00996_consen 350 YIAYVSTTVET 360 (438)
T ss_dssp EEEEEEEEE-S
T ss_pred EEEEEEeccCC
Confidence 99999998754
No 2
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=6e-57 Score=444.39 Aligned_cols=360 Identities=28% Similarity=0.509 Sum_probs=297.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (431)
|+++|||||||||++||++|+.|+++|++|+|||+|++|||+++|++++++..|+.. +.+. +
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~-~~~~-----------------~ 62 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKP-GETP-----------------P 62 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcc-cCCC-----------------c
Confidence 467899999999999999999999999999999999999999999998876444321 1110 1
Q ss_pred ccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (431)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (431)
+.+ ...+.|++|+. |+++++.+.++++|.++++.+|++|+.++..|++..+|++.++|.+..++|+++.+++.+|+++
T Consensus 63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l 140 (443)
T PTZ00363 63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC 140 (443)
T ss_pred hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence 112 24689999995 9999999999999999999999999999999987348899999999999999999999999999
Q ss_pred HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (431)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (431)
|+|++++.++....+..+. ...+...|+.+|++++++++.+++++.+++++.... +. .+.++..++.++..|+
T Consensus 141 ~kfl~~v~~~~~~~~~~~~----~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~y~ 213 (443)
T PTZ00363 141 KNFLQYVSNYDENDPETHK----GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKLYM 213 (443)
T ss_pred HHHHHHHHhhccCChhhhc----ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHHHH
Confidence 9999999876542211110 011346899999999999999999988876664211 00 0124667888999999
Q ss_pred hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (431)
Q Consensus 259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~ 338 (431)
.|+++||. ++++||+||+++|+|+|+|.++++||+|+|+++|++|..+ +++++++|++++|++++|++||++|.+.
T Consensus 214 ~S~~~~g~--~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~~- 289 (443)
T PTZ00363 214 DSLSRYGK--SPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSYF- 289 (443)
T ss_pred HHHhhccC--CcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECcccc-
Confidence 99999985 3478999999999999999999999999999999999987 3578889999999999999999998875
Q ss_pred CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (431)
Q Consensus 339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~ 416 (431)
+.- ....++++|++||+++|++. +.+..+|+||+.+++. .+.|||.+.|+++++||+|+
T Consensus 290 p~~-----------------~~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~ 350 (443)
T PTZ00363 290 PDK-----------------VKKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK 350 (443)
T ss_pred ccc-----------------cccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence 221 12467899999999999864 2356789999998876 57899999999999999999
Q ss_pred EEEEEEcCCCCC
Q 014049 417 VSLDLLSPLPHQ 428 (431)
Q Consensus 417 ~~~~i~~~~p~~ 428 (431)
+++|++|.++..
T Consensus 351 ~i~~~st~~~t~ 362 (443)
T PTZ00363 351 YIAIISTTVETN 362 (443)
T ss_pred EEEEEEEecCCC
Confidence 999999997653
No 3
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-52 Score=384.37 Aligned_cols=354 Identities=31% Similarity=0.535 Sum_probs=296.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (431)
+++|||||+|+|+..++.+++|+.+|++|+|+|+|++|||-.+|+++.++..|+....... ++
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~ 64 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE 64 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence 4569999999999999999999999999999999999999999999988878876431100 01
Q ss_pred cccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH
Q 014049 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (431)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~ 179 (431)
.. ...+.|++|+. |++++..++++.+|++.++.+|++|+.++..|++. +|+++++|.+..+++.++.+++.+||++|
T Consensus 65 ~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~ 141 (440)
T KOG1439|consen 65 KL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM 141 (440)
T ss_pred cc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence 11 35789999998 99999999999999999999999999999999986 67999999999999999999999999999
Q ss_pred HHHHHHHcccCCCccccccccccccccC-CcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049 180 RFFKLVQGHLSLDESEENNVRISEEDLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (431)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (431)
||+.++.++.+..+..+. ..+.. .++.+++.++++....+++..+++++...+ .. -..++.+++.++.+|+
T Consensus 142 kFl~~V~n~~e~~~~~~~-----~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd--~~-ld~p~~~~~~ri~~Y~ 213 (440)
T KOG1439|consen 142 KFLKFVLNYDEEDPKTWQ-----GYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDD--SY-LDQPAKETLERILLYV 213 (440)
T ss_pred HHHHHHhhhhhhcccccc-----ccccccchHHHHHHHhcccccceeeeeeeeEEEecc--hh-ccCccHHHHHHHHHHH
Confidence 999999887654332111 12232 389999999999998888887765553222 10 1246778899999999
Q ss_pred hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (431)
Q Consensus 259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~ 338 (431)
+|+++||.++ ++||+||.++|+|+|||.++..||+++||.++.+|..++ +|+++||+ +.+++.+++.||++|++.
T Consensus 214 ~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~- 288 (440)
T KOG1439|consen 214 RSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF- 288 (440)
T ss_pred HHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc-
Confidence 9999999754 899999999999999999999999999999999999853 68888987 567778999999999975
Q ss_pred CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC--CCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (431)
Q Consensus 339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~ 416 (431)
+. +....++++|++||++.|.+ .+.+..+++||+.+.+. .+.|||+..|++..+||+|+
T Consensus 289 ~~-----------------~~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~r--ksdi~v~~~ss~~~vcpeG~ 349 (440)
T KOG1439|consen 289 PQ-----------------KVKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVGR--KSDIYVFGLSSAHNVCPEGK 349 (440)
T ss_pred hH-----------------HHHhhhheeeeeEEecCCcCcCCccceeeEEechhhhCC--cccEEEEEeccCCCcCCCce
Confidence 21 11235678999999988754 35678999999988877 88999999999999999999
Q ss_pred EEEEEEcCC
Q 014049 417 VSLDLLSPL 425 (431)
Q Consensus 417 ~~~~i~~~~ 425 (431)
+++||+|-+
T Consensus 350 yia~vsT~~ 358 (440)
T KOG1439|consen 350 YIAYVSTTV 358 (440)
T ss_pred EEEEEEecc
Confidence 999999976
No 4
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-50 Score=370.29 Aligned_cols=372 Identities=36% Similarity=0.614 Sum_probs=289.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChh--------hhhhhhh---cCCCCCC------
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPSS------ 81 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~--------~~~~~~~---~~~~~~~------ 81 (431)
.++.|||||||+|+.+.+.|++.+|+|.+|+|||+|.+|||.|++|++. .+..+.+ +...+..
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~ 84 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA 84 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence 3568999999999999999999999999999999999999999999976 3333321 1111111
Q ss_pred ----CCCCCccccccccc---------------cccccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccc
Q 014049 82 ----VCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142 (431)
Q Consensus 82 ----~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~ 142 (431)
.....++.+.+..+ .....+.++.|+|++|+. |+++++.|.++++|+++++.+|.||+.+
T Consensus 85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V 163 (547)
T KOG4405|consen 85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV 163 (547)
T ss_pred CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence 11122222222221 011122356899999997 9999999999999999999999999999
Q ss_pred cceeeeccCCceeecCCChhhhhccCCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChh
Q 014049 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK 222 (431)
Q Consensus 143 ~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 222 (431)
+..+... +|++..+|+++.++|+++.|+..+||.||||++++..+... ...+...++.+++|.+||++++++++
T Consensus 164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tE-----k~~~~~~~~~e~~F~EyL~~~rltp~ 237 (547)
T KOG4405|consen 164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTE-----KDPDEYVEFRERPFSEYLKTMRLTPK 237 (547)
T ss_pred chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhc-----cCcHHHHHhhcCcHHHHHHhcCCChh
Confidence 9988765 78999999999999999999999999999999999988521 11222345667899999999999999
Q ss_pred HHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcce
Q 014049 223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (431)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V 302 (431)
++.++.++|++..+.+ .++..++.+...|+.++|+||+. +|+||.||.|+|+|+|||++++.||.|.|+.+|
T Consensus 238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgnt--pfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V 309 (547)
T KOG4405|consen 238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNT--PFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV 309 (547)
T ss_pred hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCC--cceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence 9999999999876543 46888999999999999999975 499999999999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC-CCC
Q 014049 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLS 381 (431)
Q Consensus 303 ~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~ 381 (431)
+.|..+++..++..+..+.|+.+.|+.+|+.|.++ +.-. . .+...++++|+++|++.++.. +..
T Consensus 310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~-------------~~~~~K~Israv~itd~sil~~e~~ 374 (547)
T KOG4405|consen 310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-C-------------SRVQLKQISRAVLITDPSILKTELD 374 (547)
T ss_pred hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-c-------------cccchhhcceeEEecCccccchhHH
Confidence 99999854444333334679999999999998886 4322 0 112344799999999988643 222
Q ss_pred ce--EEEeCCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEc
Q 014049 382 NF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLS 423 (431)
Q Consensus 382 ~~--~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~ 423 (431)
.. +...++. .++ +-.+.+...++++..||+|.+++++..
T Consensus 375 q~~~ll~~~~~-epg--~~avr~iel~~~t~tc~kg~yLvhlT~ 415 (547)
T KOG4405|consen 375 QQLSLLSLLAV-EPG--AMAVRLIELCSSTMTCPKGTYLVHLTC 415 (547)
T ss_pred hhhhhhhcccc-Ccc--hhhHHHHHhhcccccCccceEEEEeec
Confidence 22 2222222 222 567778888889999999999999874
No 5
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-49 Score=359.56 Aligned_cols=350 Identities=30% Similarity=0.520 Sum_probs=289.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (431)
.+.|||||.|+|+..++.+++|+.+|++|+|+|+|++||+-.+|++..++..|++.+..-+ .
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p------------------~ 65 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP------------------S 65 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc------------------c
Confidence 3479999999999999999999999999999999999999999999998888887652110 0
Q ss_pred cccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH
Q 014049 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (431)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~ 179 (431)
-....++|++|+. |++++..++++.+|++.++.+|++|+++...|.+. +|+++++|.++.++|+++.+++.+|+.+|
T Consensus 66 -k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~vm 142 (434)
T COG5044 66 -KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVM 142 (434)
T ss_pred -ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHHH
Confidence 0124678999998 99999999999999999999999999999999887 66999999999999999999999999999
Q ss_pred HHHHHHHcccCCCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049 180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (431)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (431)
||++++.++.+.. ..+...+.++++.+++. +|+++.....++.++++++. +.+ +++++++.++.+|+
T Consensus 143 rFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl~-----~p~re~~erIl~Y~ 210 (434)
T COG5044 143 RFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DLD-----IPAREALERILRYM 210 (434)
T ss_pred HHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-ccc-----CCchHHHHHHHHHH
Confidence 9999988875421 11122355577777775 69999999999988877742 222 57889999999999
Q ss_pred hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (431)
Q Consensus 259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~ 338 (431)
+|++.||.+ +++||+||.++|+|+|||.++..||+++||+++.+|.-. ..+.+|. .++.+..|.+||++|++.
T Consensus 211 ~Sf~~yg~~--pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~- 283 (434)
T COG5044 211 RSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF- 283 (434)
T ss_pred HhhcccCCC--cceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc-
Confidence 999999964 599999999999999999999999999999999999754 3334665 567789999999988875
Q ss_pred CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeC-C--CCCCCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCC
Q 014049 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-S--SLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415 (431)
Q Consensus 339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G 415 (431)
+.-. .. + .....+.|++|+.. . ++....+..+++|||.++.. .+.|||...|+++.+||||
T Consensus 284 ~~~~----~~-------~---~q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPEG 347 (434)
T COG5044 284 REDS----KS-------V---GQFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPEG 347 (434)
T ss_pred cccc----cc-------c---chhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCCc
Confidence 2200 00 0 11246788898865 3 34445688999999999988 5669999999999999999
Q ss_pred cEEEEEEcCC
Q 014049 416 MVSLDLLSPL 425 (431)
Q Consensus 416 ~~~~~i~~~~ 425 (431)
++++||+|-.
T Consensus 348 y~l~yisT~~ 357 (434)
T COG5044 348 YYLAYISTID 357 (434)
T ss_pred eEEEEEEecc
Confidence 9999999864
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=100.00 E-value=3.4e-33 Score=285.07 Aligned_cols=345 Identities=17% Similarity=0.190 Sum_probs=224.3
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccCC
Q 014049 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH 104 (431)
Q Consensus 25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
|||||||++||+||++|+++|++|+||||++++||+++|++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~------------------------------------- 43 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD------------------------------------- 43 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence 6999999999999999999999999999999999999998653
Q ss_pred CCceeeecCCCeEEeeCchHHHHHHhcCc--ccccccccccceee-eccCCceeecCCChhhhhcc-CCCChHHHHHHHH
Q 014049 105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATFM-LDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR 180 (431)
Q Consensus 105 ~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~--~~~~~f~~~~~~~~-~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l~~ 180 (431)
+|.+|. |++++..++.+.+++...|. .+++++...++.|. +..+|+.+.++.+....... ..+++.+...+.+
T Consensus 44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 120 (502)
T TIGR02734 44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR 120 (502)
T ss_pred --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence 577888 69988776667777777774 56788888777663 33467778888765432221 1234566667777
Q ss_pred HHHHHHcccCC-------Ccccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhc
Q 014049 181 FFKLVQGHLSL-------DESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK 246 (431)
Q Consensus 181 ~~~~~~~~~~~-------~~~~~--~~-----~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s 246 (431)
|++.++..... .+... .. ......+...|+.+|++++..++.++.++...... +..++ .+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~--~g~~p--~~~~ 196 (502)
T TIGR02734 121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALF--LGGNP--FRTP 196 (502)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhccccee--eccCc--ccch
Confidence 76655443210 00000 00 01112335689999999988888888876532111 11111 1112
Q ss_pred hhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEE
Q 014049 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (431)
Q Consensus 247 ~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~ 326 (431)
. +..+..+.. ..+ .+++|.||++.++++|.+.++++|++|+++++|++|..+ ++++++|++++|+++.
T Consensus 197 ~---~~~l~~~~~---~~~----g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 197 S---IYALISALE---REW----GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD 264 (502)
T ss_pred H---HHHHHHHHH---hhc----eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence 1 111211211 111 267999999999999999999999999999999999987 7788899999999999
Q ss_pred eCEEEECCC--CCCCCCCCCchhhhhhhh-hhhcccCCCCeEEEEEEEeC---CCCCCCCCceEEEeCCCCC--------
Q 014049 327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL-------- 392 (431)
Q Consensus 327 Ad~VI~~p~--~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~-------- 392 (431)
||+||++.+ .++..|+. .+. .+... +.+.+...........+.++ ++++ ...+|.+++.+...
T Consensus 265 ad~VI~a~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLLP-NHP-RRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWP-QLAHHTLCFGPRYKELFDEIFR 341 (502)
T ss_pred CCEEEECCcHHHHHHHhcC-ccc-cccccccccccCCcCCeeeEEEEeeccccCcCC-CcCceeEecCcCHHHHHHHHhc
Confidence 999997543 34334431 111 11111 11111111122222233345 4453 23455666543211
Q ss_pred -C-CCCCCeEEEEEecC-CCccCCCCcEEEEEEcCCCCC
Q 014049 393 -F-PEQVTSIRVLQLGG-NLAVCPLGMVSLDLLSPLPHQ 428 (431)
Q Consensus 393 -~-~~~~~~i~v~~~~~-~~~~aP~G~~~~~i~~~~p~~ 428 (431)
+ -..+|++|+..++. |++.||+|+.++++++++|.+
T Consensus 342 ~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~ 380 (502)
T TIGR02734 342 KGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHL 380 (502)
T ss_pred CCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCC
Confidence 0 02379999999984 899999999999999999864
No 7
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-32 Score=276.60 Aligned_cols=342 Identities=19% Similarity=0.191 Sum_probs=204.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (431)
|..+||||||||++||+||++||++|++|+||||++++||+++|++.+
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-------------------------------- 48 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-------------------------------- 48 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence 356899999999999999999999999999999999999999998753
Q ss_pred cccCCCCceeeecCCCeEEeeCchHHHHHHhcC-cccc-cccccccceee-eccCCceeecCCChhhhhc-cCCCChHHH
Q 014049 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATFM-LDADAKLCSVPDSRAAIFK-DKSLGLMEK 175 (431)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~-~~~~-~~f~~~~~~~~-~~~~g~~~~~p~~~~~~~~-~~~l~~~~k 175 (431)
+|.+|. ||+++...... .++.+++ ..++ +++...++.+. +..+|....+..+...... ....++.+.
T Consensus 49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~ 119 (487)
T COG1233 49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG 119 (487)
T ss_pred -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence 577888 69888776654 5555555 5554 77777777664 3345778888776643322 123345566
Q ss_pred HHHHHHHHHHHcccCCC----cc--ccc---ccccc------ccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcch
Q 014049 176 NQLMRFFKLVQGHLSLD----ES--EEN---NVRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (431)
Q Consensus 176 ~~l~~~~~~~~~~~~~~----~~--~~~---~~~~~------~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (431)
..+.+++..+.+..+.. .. ... ..... ......+..+++.....++.++..+.+..... . ..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~-~-~~p 197 (487)
T COG1233 120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG-G-APP 197 (487)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCC
Confidence 56666555433321110 00 000 00000 01123456666665555566776665532222 1 221
Q ss_pred hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC
Q 014049 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (431)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~ 320 (431)
. +. .++..+..+ +....| +.||+|||++|+++|++.++++||+|+++++|++|.++ +|+.++|++.
T Consensus 198 ~----~~-~a~~~~~~~--~~~~~G-----~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~ 263 (487)
T COG1233 198 S----TP-PALYLLLSH--LGLSGG-----VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS 263 (487)
T ss_pred C----ch-hHHHHHHHH--hcccCC-----eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence 0 01 022222211 111122 78999999999999999999999999999999999998 7777888888
Q ss_pred CCcEEEeCEEEECCCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC---CCCceEEEeCCCCCCC---
Q 014049 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIFPPRSLFP--- 394 (431)
Q Consensus 321 ~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~--- 394 (431)
+|+.+.||.||++.+......+ . ++..+ ........+ +.+.+...-.+.. ...++..++..+....
T Consensus 264 ~g~~~~ad~vv~~~~~~~~~~l---~---~~~~~-~~~~~~~~~-~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (487)
T COG1233 264 DGENIEADAVVSNADPALLARL---L---GEARR-PRYRGSYLK-SLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEE 335 (487)
T ss_pred ccceeccceeEecCchhhhhhh---h---hhhhh-hccccchhh-hhHHHHhccCCCCCCcchhhcceEecCCcHHHHHH
Confidence 8878999999987554322221 1 11111 000001111 1111111112221 2334444444332211
Q ss_pred ------CCCCeEEEEEec-CCCccCCCCcE-EEEEEcCCC
Q 014049 395 ------EQVTSIRVLQLG-GNLAVCPLGMV-SLDLLSPLP 426 (431)
Q Consensus 395 ------~~~~~i~v~~~~-~~~~~aP~G~~-~~~i~~~~p 426 (431)
...+++|+++++ .|+++||+|+. ++..+.++|
T Consensus 336 ~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~ 375 (487)
T COG1233 336 AFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVP 375 (487)
T ss_pred HhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecC
Confidence 001269999999 59999999986 333344444
No 8
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=100.00 E-value=5.5e-31 Score=267.71 Aligned_cols=348 Identities=15% Similarity=0.160 Sum_probs=215.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (431)
|||||||||++||+||++|+++|++|+||||++.+||++++++.+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~----------------------------------- 45 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFERE----------------------------------- 45 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccC-----------------------------------
Confidence 699999999999999999999999999999999999999998754
Q ss_pred CCCCceeeecCCCeEEe------eCchHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhcc-CCCChHH
Q 014049 103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME 174 (431)
Q Consensus 103 ~~~~~~~~dl~Gp~~~~------~~~~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~ 174 (431)
+|.+|. |++++. ....+.+.+...+. .+++...+..+ +...+|..+.++.+....... ....|.+
T Consensus 46 ----G~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~ 118 (493)
T TIGR02730 46 ----GYRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE 118 (493)
T ss_pred ----CEEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence 455666 466543 22234445554442 24444333323 222356667777766433321 2234777
Q ss_pred HHHHHHHHHHHHcccCC------Cc-c-ccccc----c------ccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCC
Q 014049 175 KNQLMRFFKLVQGHLSL------DE-S-EENNV----R------ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236 (431)
Q Consensus 175 k~~l~~~~~~~~~~~~~------~~-~-~~~~~----~------~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~ 236 (431)
...+.+|++.++..... .. . ..... . ....+...++.++++++..++.++.++.........
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~ 198 (493)
T TIGR02730 119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence 77888887765432210 00 0 00000 0 011233578999999988899999877632111111
Q ss_pred CcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEE
Q 014049 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (431)
Q Consensus 237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (431)
... ++.+. +..+..+. ...++ .+++|.||+++|+++|.+.++++|++|+++++|++|.++ ++++++
T Consensus 199 ~p~---~~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 264 (493)
T TIGR02730 199 VPA---DQTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAVG 264 (493)
T ss_pred CCc---ccchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEEE
Confidence 110 01111 11121111 11122 267999999999999999999999999999999999987 788899
Q ss_pred EEeCCCcEEEeCEEEECC--CCCCCCCCCCchhhhhhhhhhh-cccCCCCeEEEEEEEeCCCCCCC-CCceEEEeCCCCC
Q 014049 317 VRLASGQDILSHKLVLDP--SFTVPGSLASSHQQLQESFQAF-SLSDNKGKVARGICITRSSLKPD-LSNFLVIFPPRSL 392 (431)
Q Consensus 317 V~~~~G~~i~Ad~VI~~p--~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~ 392 (431)
|++.+|+++.||.||++. ..++.+|+. . ..++...... .+...........+.++.++.+. ...|.++++.-..
T Consensus 265 v~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~-~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~ 342 (493)
T TIGR02730 265 VKLADGEKIYAKRIVSNATRWDTFGKLLK-A-ENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTN 342 (493)
T ss_pred EEeCCCCEEEcCEEEECCChHHHHHHhCC-c-cccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhc
Confidence 999999999999999753 344445542 1 1122211111 11111122333444457654322 2223355542211
Q ss_pred CCCCCCeEEEEEec-CCCccCCCCcEEEEEEcCCCCC
Q 014049 393 FPEQVTSIRVLQLG-GNLAVCPLGMVSLDLLSPLPHQ 428 (431)
Q Consensus 393 ~~~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~~p~~ 428 (431)
....++++||..++ .|+++||+|+.++++++++|..
T Consensus 343 ~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~ 379 (493)
T TIGR02730 343 LEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSME 379 (493)
T ss_pred cCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChh
Confidence 12347899999998 4899999999999999988763
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=6.3e-30 Score=260.27 Aligned_cols=343 Identities=13% Similarity=0.044 Sum_probs=200.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (431)
.||||||||++||+||++|+++|++|+||||++++||++++++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~----------------------------------- 46 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR----------------------------------- 46 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence 599999999999999999999999999999999999999998653
Q ss_pred CCCCceeeecCCCeEEee---CchHHHHHHhcCccccccccccccee-eeccCC-ceeecCCChhhhhcc-CCCChHHHH
Q 014049 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN 176 (431)
Q Consensus 103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g-~~~~~p~~~~~~~~~-~~l~~~~k~ 176 (431)
+|.+|. |++++.. .+.+-.++.++|+... ++...++.+ .+..|| ..+.++.+.+..... ....+.+.+
T Consensus 47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~ 120 (492)
T TIGR02733 47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER 120 (492)
T ss_pred ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence 577888 6888754 3345566777776521 233344433 233456 345556554332210 011233322
Q ss_pred HHHH---HHHHHHcccCCCc----c-cccc---------cc-ccccccCCcHHHHHHhc--CCChhHHHHHHHHHhcCCC
Q 014049 177 QLMR---FFKLVQGHLSLDE----S-EENN---------VR-ISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY 236 (431)
Q Consensus 177 ~l~~---~~~~~~~~~~~~~----~-~~~~---------~~-~~~~~~~~s~~~~l~~~--~~~~~l~~~~~~~~~~~~~ 236 (431)
.+.. ............+ . .... .. ....+...|+.+|++++ ..++.++.++...... +
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~--~ 198 (492)
T TIGR02733 121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL--Y 198 (492)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh--h
Confidence 1111 1111000000000 0 0000 00 00123458999999986 4567788877542211 1
Q ss_pred CcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEE
Q 014049 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (431)
Q Consensus 237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (431)
...+ ..+.+.. ..+. ++ .+.... .| .+|++||+++|+++|++.++++|++|+++++|++|.++ ++++++
T Consensus 199 ~~~~-~~~~~~~---~~~~-~~-~~~~~~--~G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 267 (492)
T TIGR02733 199 SQED-ADETAAL---YGAT-VL-QMAQAP--HG-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW 267 (492)
T ss_pred ccCC-hhhhhHH---HHHH-Hh-hccccC--CC-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence 1111 0111211 1110 11 111111 01 57899999999999999999999999999999999987 677778
Q ss_pred EEeCCC-----cEEEeCEEEECCC-CCCCCCCCCchhhhhhhhh-hhcccCCCCeEEEEEEEeCCC-CCCC-CCceEEEe
Q 014049 317 VRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQ-AFSLSDNKGKVARGICITRSS-LKPD-LSNFLVIF 387 (431)
Q Consensus 317 V~~~~G-----~~i~Ad~VI~~p~-~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~~-~~~~-~~~~~~~~ 387 (431)
|++.+| +++.||+||++.+ ..+.+++. ++.++..+. .+.+...........+.+++. ++.+ ..++..++
T Consensus 268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~--~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~ 345 (492)
T TIGR02733 268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELLG--PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS 345 (492)
T ss_pred EEEecCCCCceEEEECCEEEECCCHHHHHHhcC--cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeecc
Confidence 877665 6799999997633 33344442 223333222 222211111122233345653 2212 23444444
Q ss_pred CCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEcCCCCC
Q 014049 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPHQ 428 (431)
Q Consensus 388 ~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~~~p~~ 428 (431)
.+ ..++||..++.|++.||+|+.++++++++|+.
T Consensus 346 ~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~ 379 (492)
T TIGR02733 346 DH-------QGSLFVSISQEGDGRAPQGEATLIASSFTDTN 379 (492)
T ss_pred CC-------CceEEEEeCCccccCCCCCceEEEEEcCCCHH
Confidence 32 23899999888889999999999999999753
No 10
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.95 E-value=2.1e-25 Score=225.63 Aligned_cols=331 Identities=15% Similarity=0.154 Sum_probs=203.6
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (431)
+.||+|||||++||+||..|+++ |++|+|||+++++||+++|.+.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------ 51 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------ 51 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence 36999999999999999999999 99999999999999999997542
Q ss_pred cccccCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHH
Q 014049 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (431)
Q Consensus 98 ~~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~ 176 (431)
+|.+|+ |++++...+ .+.+++.++|+.+++.+......+++..+|+.+++|.+..+.+....+++.++.
T Consensus 52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 121 (462)
T TIGR00562 52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL 121 (462)
T ss_pred ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence 466788 688886655 488889999987765443333344443238888888776666555555554444
Q ss_pred HHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHH
Q 014049 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (431)
Q Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 256 (431)
.+. +.... .. ....+.|+.+|+++.. .+.+.+.+...+....+..++ +++|+..++..+..
T Consensus 122 ~~~--~~~~~---~~-----------~~~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~ 182 (462)
T TIGR00562 122 RAG--MDFIR---PA-----------SPGKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ 182 (462)
T ss_pred Hhh--hhhcc---CC-----------CCCCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence 322 11110 00 0123589999998653 333333232222222233332 34566655443322
Q ss_pred HHhh-------h------------ccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEE
Q 014049 257 YNSS-------I------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (431)
Q Consensus 257 ~~~s-------~------------~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g 316 (431)
.... + ..+....+. +.+++||+++|+++|++.+. .++|+++++|++|..+ +++ +.
T Consensus 183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~ 257 (462)
T TIGR00562 183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT 257 (462)
T ss_pred HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence 1110 0 001011122 56799999999999987553 2789999999999876 443 46
Q ss_pred EEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCC-CCCCCCceEEEeCCCCCCC
Q 014049 317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFP 394 (431)
Q Consensus 317 V~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~ 394 (431)
|++++|+++.||+||++ |...+..++.. ++.......+...+..+.+..+.++++ +........++.|....
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~ll~~----~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~-- 331 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAGLLSE----LSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSK-- 331 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHHHhcc----cCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCC--
Confidence 77788889999999974 54443444321 222222222233566777878888776 33233445555554321
Q ss_pred CCCCeEEEEEec-CCCccCCCCcEEEEEEcC
Q 014049 395 EQVTSIRVLQLG-GNLAVCPLGMVSLDLLSP 424 (431)
Q Consensus 395 ~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~ 424 (431)
.+.+.+...+ ..+..+|+|+.++.+.+.
T Consensus 332 --~~~~~~i~~s~~~p~~~p~g~~~l~~~~~ 360 (462)
T TIGR00562 332 --FAILGCIFTSKLFPNRAPPGKTLLTAYIG 360 (462)
T ss_pred --CceEEEEEEccccCCcCCCCcEEEEEEeC
Confidence 1233333333 356789999888876653
No 11
>PRK07233 hypothetical protein; Provisional
Probab=99.95 E-value=3.7e-25 Score=222.07 Aligned_cols=329 Identities=15% Similarity=0.122 Sum_probs=192.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (431)
+|||||||++||+||..|+++|++|+|||+++++||++++++.+|
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g----------------------------------- 45 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG----------------------------------- 45 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence 589999999999999999999999999999999999999987543
Q ss_pred CCCceeeecCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHHHHH
Q 014049 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF 182 (431)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~ 182 (431)
|.+|. |.++++. ...+.+++.+.|+...+.+......+.+ +|+.++++. ...+++...+++.++..+...+
T Consensus 46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 117 (434)
T PRK07233 46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT 117 (434)
T ss_pred ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence 23344 3454433 3367788888888665555443332322 455544432 2233343455555555433222
Q ss_pred HHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhc
Q 014049 183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262 (431)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~ 262 (431)
...... . ...++...++.+|+++...++..+.++...+ ...+..++ +++|+...+..+..+...
T Consensus 118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~s~~~~~~~~~~~~~~-- 181 (434)
T PRK07233 118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWEPLL-ESKFGDYA--DDVSAAWLWSRIKRRGNR-- 181 (434)
T ss_pred Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHHHHH-hcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence 111110 0 0123456899999998654444444433211 11122222 345665544443322111
Q ss_pred cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCC
Q 014049 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (431)
Q Consensus 263 ~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l 341 (431)
........+.+|+||++.|+++|.+.++..|++|+++++|++|..+ +++++++. .+|+++.||+||++ |...+..+
T Consensus 182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 0000011267899999999999999999999999999999999886 66665665 57889999999965 44444454
Q ss_pred CCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCeEEEEEec-CCCccCCCCcEEEE
Q 014049 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG-GNLAVCPLGMVSLD 420 (431)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~aP~G~~~~~ 420 (431)
+.. ++.......+...+....+..+.+++++.+ .+.+.++.... +..-+...+ .++..+|+|+.+++
T Consensus 259 l~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~g~~~~~ 326 (434)
T PRK07233 259 VPD----LPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGA-----PFGGVIEHTNLVPPERYGGEHLVY 326 (434)
T ss_pred cCC----CcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCC-----CcceEEEecccCCccccCCceEEE
Confidence 421 221111111222344555556667777642 23333222111 112223333 35667788888776
Q ss_pred EEcCCC
Q 014049 421 LLSPLP 426 (431)
Q Consensus 421 i~~~~p 426 (431)
+....+
T Consensus 327 ~~~~~~ 332 (434)
T PRK07233 327 LPKYLP 332 (434)
T ss_pred EeeecC
Confidence 665544
No 12
>PLN02576 protoporphyrinogen oxidase
Probab=99.94 E-value=1.2e-24 Score=222.05 Aligned_cols=334 Identities=18% Similarity=0.173 Sum_probs=200.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (431)
.++||+|||||++||+||.+|+++ |++|+|||+++++||+++|++.+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~-------------------------------- 58 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED-------------------------------- 58 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--------------------------------
Confidence 357999999999999999999999 99999999999999999997643
Q ss_pred cccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccc-cceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (431)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (431)
+|.+|. ||+++...++.+..+.+.|+.+++.|... ...|++. +|+.+++|.+..+.+....+++.+|..+
T Consensus 59 -------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 129 (496)
T PLN02576 59 -------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIRA 129 (496)
T ss_pred -------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHHH
Confidence 456788 68888776666666666688777665432 2345443 7888889887666666666776665543
Q ss_pred HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (431)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 258 (431)
..- .. ..... .....+.|+.+|+++. +.+.+.+.+...+....+..++ +++|+..++..+..+.
T Consensus 130 ~~~--~~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~e 193 (496)
T PLN02576 130 GLG--AF-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNLE 193 (496)
T ss_pred hHH--Hh-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHHH
Confidence 211 11 11000 0113468999999975 4555554443332222234343 4466665554433221
Q ss_pred hhhcc--------c----------------c-CCCccEEeecCCcchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCC
Q 014049 259 SSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSG 312 (431)
Q Consensus 259 ~s~~~--------~----------------g-~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g 312 (431)
...+. . . ......++++||+++|+++|++. ++ ++|++|++|++|..+ ++
T Consensus 194 ~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~--~~ 268 (496)
T PLN02576 194 KRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKN--DD 268 (496)
T ss_pred HhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEEC--CC
Confidence 10000 0 0 00122567899999999998753 45 789999999999876 34
Q ss_pred cEEEEEe--CCCc-EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC-CC------CCC
Q 014049 313 SYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KP------DLS 381 (431)
Q Consensus 313 ~~~gV~~--~~G~-~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------~~~ 381 (431)
..+.|++ .+|+ ++.||+||++ |...+..++.... ++....+. ...+..+.++.+.+++++ .. ...
T Consensus 269 ~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~-~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 344 (496)
T PLN02576 269 GGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALP-EFYYPPVAAVTTSYPKEAVKRERLIDGPLE 344 (496)
T ss_pred CcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhc-cCCCCceEEEEEEEchHHcccccccCCCCC
Confidence 3123433 3554 6999999975 5544455442222 22222222 234556677777777753 22 112
Q ss_pred ceEEEeCCCCCCCCCCCeEEEEEec-CCCccCCCCcEEEEEEcC
Q 014049 382 NFLVIFPPRSLFPEQVTSIRVLQLG-GNLAVCPLGMVSLDLLSP 424 (431)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~ 424 (431)
.+..+.|+.. + .+.+-+...+ ..+..+|+|..++.+.+.
T Consensus 345 ~~g~l~~~~~-~---~~~lg~~~~s~~~p~~~~~~~~~l~~~~~ 384 (496)
T PLN02576 345 GFGQLHPRKQ-G---VKTLGTIYSSSLFPDRAPEGRVLLLNYIG 384 (496)
T ss_pred ceEEEccCCC-C---CceEEEEeecCcCCCCCCCCCEEEEEEEC
Confidence 2333333321 1 1233334333 356788888876655443
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.94 E-value=1.6e-24 Score=218.68 Aligned_cols=331 Identities=15% Similarity=0.166 Sum_probs=194.9
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (431)
+|||||||++||+||..|+++| ++|+|||+++++||+++|++.+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~---------------------------------- 47 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD---------------------------------- 47 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC----------------------------------
Confidence 6999999999999999999988 8999999999999999997643
Q ss_pred cCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCCh--------hhhhccCCCCh
Q 014049 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL 172 (431)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~l~~ 172 (431)
++.+|+ |++.+...+ .+.+++.+.|+..+..+......+++. +|+.+.+|... ...+..+.++.
T Consensus 48 -----g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T PRK11883 48 -----GFPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP 120 (451)
T ss_pred -----CeEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence 345677 576544433 577888999987654433212224443 67777666421 00001112221
Q ss_pred HHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHH
Q 014049 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (431)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 252 (431)
.++... ...... .......++|+.+|+++. .++...+.+...+....+..++ +++|+...+.
T Consensus 121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 182 (451)
T PRK11883 121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP 182 (451)
T ss_pred HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence 111110 001000 001224568999999863 4444443333222222233332 3455554444
Q ss_pred HHHHHHhhhc-----------ccc-CCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC
Q 014049 253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (431)
Q Consensus 253 ~~~~~~~s~~-----------~~g-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~ 320 (431)
.+..+....+ ... .....+.+++||++.|+++|++.+... +|+++++|++|..+ ++. +.|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~ 257 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS 257 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence 3333221110 000 001225689999999999988755332 89999999999876 443 567778
Q ss_pred CCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCe
Q 014049 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399 (431)
Q Consensus 321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (431)
+|+++.||+||++ |...+..++. ++++.+.. +...+..+.+..+.+++++......+.+++++.. . .+.
T Consensus 258 ~g~~~~~d~vI~a~p~~~~~~l~~--~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~--~~~ 327 (451)
T PRK11883 258 NGGEIEADAVIVAVPHPVLPSLFV--APPAFALF----KTIPSTSVATVALAFPESATNLPDGTGFLVARNS--D--YTI 327 (451)
T ss_pred CCCEEEcCEEEECCCHHHHHHhcc--ChhHHHHH----hCCCCCceEEEEEEeccccCCCCCceEEEecCCC--C--CcE
Confidence 9999999999975 4444444432 22222222 2334667778788888886323334556666431 1 222
Q ss_pred EEEEEec-CCCccCCCCcEEEEEEcCCCCC
Q 014049 400 IRVLQLG-GNLAVCPLGMVSLDLLSPLPHQ 428 (431)
Q Consensus 400 i~v~~~~-~~~~~aP~G~~~~~i~~~~p~~ 428 (431)
-.+...+ ..+..+|+|..++.++...|+.
T Consensus 328 ~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~ 357 (451)
T PRK11883 328 TACTWTSKKWPHTTPEGKVLLRLYVGRPGD 357 (451)
T ss_pred EEEEeEcCcCCCCCCCCcEEEEEecCCCCC
Confidence 3333334 3467899999999988876643
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.94 E-value=1.6e-24 Score=219.11 Aligned_cols=326 Identities=12% Similarity=0.134 Sum_probs=192.6
Q ss_pred ccEEEECCChhHHHHHHHHhhC------CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccc
Q 014049 23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY 96 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~------G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (431)
.+|||||||++||+||..|+++ |++|+|||+++++||+++|.+.+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~----------------------------- 52 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK----------------------------- 52 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence 3799999999999999999996 37999999999999999997542
Q ss_pred ccccccCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCC--------hhhhhcc
Q 014049 97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD 167 (431)
Q Consensus 97 ~~~~~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~ 167 (431)
+|.+|+ |++++... ..+.+++.++|+++++.+..-...|++. +|...++|.+ ..+.++.
T Consensus 53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~ 120 (463)
T PRK12416 53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS 120 (463)
T ss_pred ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence 356788 68877544 4577889999998776554433445443 5666666543 2223333
Q ss_pred CCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhch
Q 014049 168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (431)
Q Consensus 168 ~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~ 247 (431)
..+++..|... +...... . ...+.+.|+.+|+++..-++..+.++... ....+..++ +++|+
T Consensus 121 ~~~~~~~~~~~------~~~~~~~------~---~~~~~~~sv~~~l~~~~~~~~~~~~~~p~-~~~~~~~~~--~~ls~ 182 (463)
T PRK12416 121 TLVSTKGKIVA------LKDFITK------N---KEFTKDTSLALFLESFLGKELVERQIAPV-LSGVYSGKL--NELTM 182 (463)
T ss_pred CcCCHHHHHHh------hhhhccC------C---CCCCCCCCHHHHHHHhcCHHHHHHHHHHH-hcccccCCc--ccccH
Confidence 33333222211 1111100 0 01134689999999753333333333321 122233332 33555
Q ss_pred hhHHHHHHHHHhhhccc------------cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEE
Q 014049 248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (431)
Q Consensus 248 ~~~~~~~~~~~~s~~~~------------g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~ 315 (431)
...+..+..+....+.. ......+.+++||+++|+++|++.+.. ++|+++++|++|..+ +++ +
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~ 257 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y 257 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence 44444443333221110 011122778999999999999886643 689999999999886 444 5
Q ss_pred EEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC-CCCCceEEEeCCCCCC
Q 014049 316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PDLSNFLVIFPPRSLF 393 (431)
Q Consensus 316 gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~ 393 (431)
.|++.+|+++.||+||++ |...+.+++ .++++++.+.++ .+..+.+..+.++++.. .....+.+++|+..
T Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~-- 329 (463)
T PRK12416 258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDEQLPADGTGFIVTENS-- 329 (463)
T ss_pred EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence 677788889999999975 544445554 245555544332 34566777777876532 12233555666442
Q ss_pred CCCCCeEEEEEecC--CCccCCCCcEEEEEEc
Q 014049 394 PEQVTSIRVLQLGG--NLAVCPLGMVSLDLLS 423 (431)
Q Consensus 394 ~~~~~~i~v~~~~~--~~~~aP~G~~~~~i~~ 423 (431)
...+--+...+ -+..+|++..++.+.+
T Consensus 330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~~ 358 (463)
T PRK12416 330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMFY 358 (463)
T ss_pred ---CCeEEEEEeecCCCCCcCCCCeEEEEEEe
Confidence 11111122221 1235677776666554
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.93 E-value=1.4e-23 Score=213.18 Aligned_cols=325 Identities=13% Similarity=0.149 Sum_probs=183.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (431)
|+...||||||||++||+||..|+++|++|+|+|+++++||++.|...+
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~------------------------------- 49 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK------------------------------- 49 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC-------------------------------
Confidence 3567899999999999999999999999999999999999999997543
Q ss_pred ccccCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049 99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (431)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~ 177 (431)
++.+|. |+++++..+ .+.+++.+.+..+.+...... .+++. +|+...+|.+..+.+. .+++.++..
T Consensus 50 --------g~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~ 116 (479)
T PRK07208 50 --------GNRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPRL-SRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK 116 (479)
T ss_pred --------CceEcc-CCceeccCCHHHHHHHHHhcCCCcccccccc-ceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence 345677 688776544 567777887753322222111 22232 6777778765333332 233333222
Q ss_pred HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHH-HHhcCCCCcchhhhhhchhhHHHHH-
Q 014049 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLY-AIAMADYDQEVSEYVLKTRDGINRL- 254 (431)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~- 254 (431)
.. ...+.... .....+.++.+|+++.. .+.+.+ ++.. ...+ |..++ +++|+..++.++
T Consensus 117 ~~--~~~~~~~~------------~~~~~~~s~~e~l~~~~-g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~ 177 (479)
T PRK07208 117 CG--ASYLKARL------------RPRKEEDSFEDWVINRF-GRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIK 177 (479)
T ss_pred HH--HHHHHHhc------------CCCCCCCCHHHHHHHhh-CHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCccc
Confidence 11 11111110 00123689999998632 333333 3321 2222 23332 345655433221
Q ss_pred --------HHHHhhh-c-------cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEE
Q 014049 255 --------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318 (431)
Q Consensus 255 --------~~~~~s~-~-------~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~ 318 (431)
...+... + ..+.....+.||+||+++|+++|++.++..|++|+++++|++|..+ +++.++++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~ 256 (479)
T PRK07208 178 GLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVV 256 (479)
T ss_pred CCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEE
Confidence 1111110 0 0010012377899999999999999999999999999999999987 234344444
Q ss_pred e--CCCc--EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCC
Q 014049 319 L--ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLF 393 (431)
Q Consensus 319 ~--~~G~--~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 393 (431)
. .+|+ ++.||+||++ |...+..++. ++++.......+...+..+.++.+.++++.. .....+.+++....
T Consensus 257 ~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~ 331 (479)
T PRK07208 257 VNDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNL--FPDNWIYIHDPDVK 331 (479)
T ss_pred EEcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCC--CCCceEEecCCCCc
Confidence 3 2454 5899999975 4333333332 1223222222222334455556666676532 11233344432211
Q ss_pred CCCCCeEEEEEec-CCCccCCCCcE
Q 014049 394 PEQVTSIRVLQLG-GNLAVCPLGMV 417 (431)
Q Consensus 394 ~~~~~~i~v~~~~-~~~~~aP~G~~ 417 (431)
. .. +..++ .++..+|+|+.
T Consensus 332 ~---~r--~~~~~~~~~~~~p~g~~ 351 (479)
T PRK07208 332 V---GR--LQNFNNWSPYLVPDGRD 351 (479)
T ss_pred c---ce--ecccccCCcccCCCCCc
Confidence 1 11 22333 25678999983
No 16
>PLN02612 phytoene desaturase
Probab=99.93 E-value=1.3e-23 Score=215.71 Aligned_cols=331 Identities=13% Similarity=0.141 Sum_probs=199.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (431)
..||+|||+|++||+||.+|+++|++|+|+|+++++||++.+++..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~---------------------------------- 138 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE---------------------------------- 138 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence 4689999999999999999999999999999999999999997531
Q ss_pred cCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeec-cCCcee--e----cCCC---hhhhhc-cCC
Q 014049 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS 169 (431)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~-~~g~~~--~----~p~~---~~~~~~-~~~ 169 (431)
.++.+|. |+++++.. ..+.+++.+.|+.+.++|......+.+. .++... . .|.. ..++++ ...
T Consensus 139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ 213 (567)
T PLN02612 139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM 213 (567)
T ss_pred ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence 2345677 68877553 3678889999998777776544433221 112222 1 2221 112221 233
Q ss_pred CChHHHHHHHH-HHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHHHH-hcCCCCcchhhhhhc
Q 014049 170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLYAI-AMADYDQEVSEYVLK 246 (431)
Q Consensus 170 l~~~~k~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~s 246 (431)
+++.+|..+.. ++... .. ......++.+.|+.+|+++.+.++.+.+ ++...+ ++ +..++ +++|
T Consensus 214 ls~~~kl~~~~~~~~~~---~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~--~~~~p--~~~S 279 (567)
T PLN02612 214 LTWPEKIKFAIGLLPAI---VG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKAL--NFINP--DELS 279 (567)
T ss_pred CCHHHHHHHHHhhhHHh---cc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHh--cCCCH--HHhh
Confidence 44444443221 11110 00 0011234567899999999999987775 333221 22 22232 3456
Q ss_pred hhhHHHHHHHHHhhhccccCCCccEEeecCCc-chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEE
Q 014049 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI 325 (431)
Q Consensus 247 ~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i 325 (431)
+...+..+..++.. ..+ ....++.|+. ..|+++|++.++.+|++|++|++|++|..+ +++++++|++.+|+++
T Consensus 280 ~~~~l~~l~~~l~~--~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~v~~~~G~~~ 353 (567)
T PLN02612 280 MQCILIALNRFLQE--KHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELN-DDGTVKHFLLTNGSVV 353 (567)
T ss_pred HHHHHHHHHHHHhc--cCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEEC-CCCcEEEEEECCCcEE
Confidence 66555554444331 222 1255677764 689999999998999999999999999986 2677778888899999
Q ss_pred EeCEEEEC-CCCCCCCCCCCch--hhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCeEEE
Q 014049 326 LSHKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRV 402 (431)
Q Consensus 326 ~Ad~VI~~-p~~~~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 402 (431)
.||+||++ |...+..++.... .++++.++. .....+.+..+.+++++.....++ ++.... ...++.
T Consensus 354 ~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~----l~~~~v~~v~l~~dr~~~~~~~~~--~~~~~~-----~~~~~~ 422 (567)
T PLN02612 354 EGDVYVSATPVDILKLLLPDQWKEIPYFKKLDK----LVGVPVINVHIWFDRKLKNTYDHL--LFSRSP-----LLSVYA 422 (567)
T ss_pred ECCEEEECCCHHHHHHhCcchhcCcHHHHHHHh----cCCCCeEEEEEEECcccCCCCCce--eecCCC-----Cceeeh
Confidence 99999975 5444444432111 122332222 224557777777899874333332 233221 113333
Q ss_pred EEecCCCccCCCCcEEEEEE
Q 014049 403 LQLGGNLAVCPLGMVSLDLL 422 (431)
Q Consensus 403 ~~~~~~~~~aP~G~~~~~i~ 422 (431)
.........+|+|+.++.+.
T Consensus 423 d~S~~~~~~~~~~~~ll~~~ 442 (567)
T PLN02612 423 DMSTTCKEYYDPNKSMLELV 442 (567)
T ss_pred hhhhcchhhcCCCCeEEEEE
Confidence 32222223456667665543
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.93 E-value=3e-23 Score=209.27 Aligned_cols=293 Identities=17% Similarity=0.173 Sum_probs=181.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (431)
+|+|||||++||+||.+|+++|++|+|||+++++||+++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------ 44 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------ 44 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence 58999999999999999999999999999999999999997421
Q ss_pred CCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeee-ccCCcee--ecC---CCh---hhhhc-cCCCCh
Q 014049 104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL 172 (431)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~-~~~g~~~--~~p---~~~---~~~~~-~~~l~~ 172 (431)
.++.+|. |++++... ..+.+++.++|+.+.+.|......|.. ..++... .+| ... .++++ ...+++
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (453)
T TIGR02731 45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW 121 (453)
T ss_pred --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence 1345677 57776543 367888999998776666543333321 1122222 112 111 11121 223455
Q ss_pred HHHHHHHHHH-HHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHH--HhcCCCCcchhhhhhchhh
Q 014049 173 MEKNQLMRFF-KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYA--IAMADYDQEVSEYVLKTRD 249 (431)
Q Consensus 173 ~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~s~~~ 249 (431)
.++..+..-+ ...... .+...++.+.|+.+|+++.+.++.+.+.+... .++. ..++ +++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~--~~~p--~~~S~~~ 187 (453)
T TIGR02731 122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN--FINP--DELSMTV 187 (453)
T ss_pred HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC--CCCH--HHHHHHH
Confidence 5554433211 111000 01123456789999999999998877543321 2222 2232 3467766
Q ss_pred HHHHHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-----
Q 014049 250 GINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ----- 323 (431)
Q Consensus 250 ~~~~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~----- 323 (431)
++..+..++. ..++. ...+..|| ++.++++|.+.++..|++|++|++|++|..+ +++++++|++.+|+
T Consensus 188 ~~~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~ 261 (453)
T TIGR02731 188 VLTALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRF 261 (453)
T ss_pred HHHHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCcee
Confidence 6655554442 12221 13345555 5789999999999999999999999999875 26778889887776
Q ss_pred EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC
Q 014049 324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (431)
Q Consensus 324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 377 (431)
++.||.||++ |...+.+++. ...+-....+.+.+ .....+.+..+.+++++.
T Consensus 262 ~~~a~~VI~a~p~~~~~~lL~-~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~ 314 (453)
T TIGR02731 262 EVTADAYVSAMPVDIFKLLLP-QPWKQMPFFQKLNG-LEGVPVINVHIWFDRKLT 314 (453)
T ss_pred EEECCEEEEcCCHHHHHhhCc-hhhhcCHHHHHhhc-CCCCcEEEEEEEEccccC
Confidence 7999999964 4444555542 11100111122222 235577888888999875
No 18
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.93 E-value=1.4e-23 Score=204.85 Aligned_cols=331 Identities=16% Similarity=0.158 Sum_probs=208.2
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (431)
.|+|||||++||+||++|+++| .+|+|||+.+++||..+|+..+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~---------------------------------- 47 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID---------------------------------- 47 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC----------------------------------
Confidence 5899999999999999999999 9999999999999999998654
Q ss_pred cCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHHH
Q 014049 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (431)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~ 180 (431)
+|.+|. ||+.++.. ..+++++.++|+++.+.+......|++. +|+++++|... ++..+.+...+...+.+
T Consensus 48 -----G~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~ 118 (444)
T COG1232 48 -----GFLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR 118 (444)
T ss_pred -----CEEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence 466788 68776555 5788999999999988877655556554 88999999864 44433332212333333
Q ss_pred HHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhh
Q 014049 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260 (431)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s 260 (431)
++........ .....+.++.+|+++..-.+-+..++. .+.-.-|..+. +++|+...+..+..-...
T Consensus 119 ~~~~~~~~~~-----------~~~~~d~sv~~f~r~~fG~ev~~~~~~-pll~giy~~~~--~~LS~~~~~p~~~~~e~~ 184 (444)
T COG1232 119 ALQEFIRPKS-----------WEPKQDISVGEFIRRRFGEEVVERFIE-PLLEGIYAGDA--DKLSAAAAFPILARAERK 184 (444)
T ss_pred HHHhhhcccC-----------CCCCCCcCHHHHHHHHHhHHHHHHHHH-HHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence 3322211100 123457899999986332222222322 11111133222 346665322222221111
Q ss_pred hccc-------cC-----CCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeC
Q 014049 261 IGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH 328 (431)
Q Consensus 261 ~~~~-------g~-----~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad 328 (431)
.+.. +. ..+.+.+++||+++++++|++.+... |+++++|++|..+ ... .++.+.+|+.+.||
T Consensus 185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~D 258 (444)
T COG1232 185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITAD 258 (444)
T ss_pred hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEcc
Confidence 1110 00 01237789999999999999877665 9999999999886 232 35556789999999
Q ss_pred EEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCC-CCCCCCceEEEeCCCCCCCCCCCeEEEEE-e
Q 014049 329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ-L 405 (431)
Q Consensus 329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~~-~ 405 (431)
.||++ |.+.+..++.. ..+.. .. .......++++++.++.+ .+..++.+.+.++.... .+-.+. +
T Consensus 259 ~VI~t~p~~~l~~ll~~--~~~~~---~~-~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~------~~~a~~~~ 326 (444)
T COG1232 259 GVISTAPLPELARLLGD--EAVSK---AA-KELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP------YILAITFH 326 (444)
T ss_pred eEEEcCCHHHHHHHcCC--cchhh---hh-hhccccceEEEEEEeccccccCCCCceEEEEecCCC------cceeEEEe
Confidence 99975 65555665532 11111 11 122344567777777664 33344667777776521 122222 3
Q ss_pred c-CCCccCCCCcEEEEEEcCCCCCC
Q 014049 406 G-GNLAVCPLGMVSLDLLSPLPHQM 429 (431)
Q Consensus 406 ~-~~~~~aP~G~~~~~i~~~~p~~~ 429 (431)
| .-+-..|+|+.++++..--|-+.
T Consensus 327 S~~~p~~~p~g~~ll~~~~~~~g~~ 351 (444)
T COG1232 327 SNKWPHEAPEGKTLLRVEFGGPGDE 351 (444)
T ss_pred cccCCCCCCCCcEEEEEEeecCCCc
Confidence 3 36789999999999988766554
No 19
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.92 E-value=8.1e-24 Score=198.91 Aligned_cols=151 Identities=25% Similarity=0.314 Sum_probs=101.8
Q ss_pred cEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC--CCCCCCCCCchh
Q 014049 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSLASSHQ 347 (431)
Q Consensus 270 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~--~~~~~l~~~~~~ 347 (431)
.+.||.|||++++.++++.++++|++|.+++.|++|..+ +|+++||+++||++++++.||+|.. .++.+|+. ..
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp--~e 330 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP--GE 330 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC--Cc
Confidence 478999999999999999999999999999999999998 8999999999999999999998754 45556653 22
Q ss_pred hhhhhh--hhhcccCCCC--eEEEEEEEeCCCCCCCCCceEE---------------EeCCCCCCCCCCCeEEEEEecC-
Q 014049 348 QLQESF--QAFSLSDNKG--KVARGICITRSSLKPDLSNFLV---------------IFPPRSLFPEQVTSIRVLQLGG- 407 (431)
Q Consensus 348 ~l~~~~--~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~i~v~~~~~- 407 (431)
.||+.. +++....... +.....+.=+.. .....||+. +-.+..-.....|.|++.++|+
T Consensus 331 ~LPeef~i~q~d~~spv~k~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~l 409 (561)
T KOG4254|consen 331 ALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSL 409 (561)
T ss_pred cCCchhhhhhcccccccccccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccccc
Confidence 355543 1221111111 111122211111 111112221 1111111123478999999996
Q ss_pred CCccCCCCcEEEEEEcCC
Q 014049 408 NLAVCPLGMVSLDLLSPL 425 (431)
Q Consensus 408 ~~~~aP~G~~~~~i~~~~ 425 (431)
|++.+|+|+.++++.+..
T Consensus 410 Dptlappg~Hvl~lf~~~ 427 (561)
T KOG4254|consen 410 DPTLAPPGKHVLHLFTQY 427 (561)
T ss_pred CCCcCCCCceEEEEeccC
Confidence 999999999999988764
No 20
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.91 E-value=3.2e-22 Score=201.64 Aligned_cols=268 Identities=18% Similarity=0.193 Sum_probs=171.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (431)
+|+|||||++||+||..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------ 44 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------ 44 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence 58999999999999999999999999999999999999997421
Q ss_pred CCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCcee--------ecC-CChhhhhccCCCChH
Q 014049 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLC--------SVP-DSRAAIFKDKSLGLM 173 (431)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~--------~~p-~~~~~~~~~~~l~~~ 173 (431)
.+|.+|. |+++++... .+.+++.+.|+.+.+.+......|.. .+++.. ..| .....+++.+.++..
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~ 120 (474)
T TIGR02732 45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV 120 (474)
T ss_pred --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence 2456777 688876543 67778888898765544432222322 133321 123 122355666778888
Q ss_pred HHHHHHHHHHH---HHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhH
Q 014049 174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (431)
Q Consensus 174 ~k~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 250 (431)
+|..+...+.. .+....-. ...+......+.|+.+|+++++.++.+.+.+...+....+..++ +++|+..+
T Consensus 121 dklr~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~ 194 (474)
T TIGR02732 121 DKLRNALALGTSPIVRGLVDYD----GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM 194 (474)
T ss_pred HHHHHHHHhhhhHHHhhccccc----hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 88765543311 11110000 00011223456899999999998876444333222222222332 35677666
Q ss_pred HHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEeCcceeEEEEecC-CC--cEEEEEeCCC---c
Q 014049 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q 323 (431)
Q Consensus 251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~~~G---~ 323 (431)
+..+..+. . +..+ +-..+++||.++ +.+.|.+.+++.|++|+++++|++|..+.. ++ ++++|++.+| +
T Consensus 195 ~~~~~~~~-~-~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~ 269 (474)
T TIGR02732 195 LTIFMLFA-A-KTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK 269 (474)
T ss_pred HHHHHHHH-h-CCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence 55444322 2 2333 126789999876 778899999999999999999999988621 12 3778877654 5
Q ss_pred EEEeCEEEEC-CCCCCCCCC
Q 014049 324 DILSHKLVLD-PSFTVPGSL 342 (431)
Q Consensus 324 ~i~Ad~VI~~-p~~~~~~l~ 342 (431)
++.||+||++ |.+....|+
T Consensus 270 ~~~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 270 VIKADAYVAACDVPGIKRLL 289 (474)
T ss_pred EEECCEEEECCChHHHHhhC
Confidence 6899999975 555445655
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.91 E-value=6e-22 Score=201.38 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=172.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (431)
...+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~--------------------------------- 120 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK--------------------------------- 120 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence 34699999999999999999999999999999999999999997421
Q ss_pred ccCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCcee----ecC--CC---hhhhhccCCC
Q 014049 101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL 170 (431)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~----~~p--~~---~~~~~~~~~l 170 (431)
.++.+|. |+++++.. ..+.+++.+.|+.+.+.+......|. ..+|... .+| .. ...+++...+
T Consensus 121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L 193 (569)
T PLN02487 121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL 193 (569)
T ss_pred -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence 2345677 68877543 36888899999976655543222232 2234331 122 11 1144455667
Q ss_pred ChHHHHHHHHHH--H-HHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhch
Q 014049 171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (431)
Q Consensus 171 ~~~~k~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~ 247 (431)
++.+|..+..-+ . .+..... +. ...+......+.|+.+|+++++.++.+.+-+...+....+..++ +++|+
T Consensus 194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA 267 (569)
T PLN02487 194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA 267 (569)
T ss_pred CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence 777776652211 0 0011000 00 00011223456899999999888875444333322222233332 45677
Q ss_pred hhHHHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEeCcceeEEEEecC-CC--cEEEEEe---C
Q 014049 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A 320 (431)
Q Consensus 248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~---~ 320 (431)
..++..+..+. ....+ +-.+|++||.++ |++.+++.++..||+|+++++|++|..+.+ ++ ++++|++ .
T Consensus 268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 66555553221 11111 126799999995 999999999999999999999999998721 22 3788988 3
Q ss_pred CCcEEEeCEEEEC-CCCCCCCCC
Q 014049 321 SGQDILSHKLVLD-PSFTVPGSL 342 (431)
Q Consensus 321 ~G~~i~Ad~VI~~-p~~~~~~l~ 342 (431)
+++++.||.||++ |...+.+|+
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKRLL 365 (569)
T ss_pred CceEEECCEEEECCCHHHHHHhC
Confidence 4557899999975 544445655
No 22
>PLN02268 probable polyamine oxidase
Probab=99.87 E-value=7.3e-21 Score=190.95 Aligned_cols=273 Identities=13% Similarity=0.119 Sum_probs=158.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (431)
+|||||||++||+||..|.++|++|+|||+++++|||++|.+..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~------------------------------------ 45 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF------------------------------------ 45 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC------------------------------------
Confidence 79999999999999999999999999999999999999996432
Q ss_pred CCCceeeecCCCeEEee---CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH-
Q 014049 104 HPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM- 179 (431)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~- 179 (431)
++.+|+ |++++.. ..++.+++.+.|++.+... .+..+.+..+...+.+... . ...++......+.
T Consensus 46 ---g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~ 114 (435)
T PLN02268 46 ---GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDM--D---GNQVPQELVTKVGE 114 (435)
T ss_pred ---CcccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecC--C---CCCCCHHHHHHHHH
Confidence 345688 6888853 2357788888888543211 1111111101010000000 0 0011111111222
Q ss_pred ---HHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCC-C------hhHHHHHHHHH-hc-CCCCcchhhhhhch
Q 014049 180 ---RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-P------HKIKSIVLYAI-AM-ADYDQEVSEYVLKT 247 (431)
Q Consensus 180 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~-~------~~l~~~~~~~~-~~-~~~~~~~~~~~~s~ 247 (431)
+++..+.... .....+.|+.+|++++.. . ...+.++.+.+ .+ .-+..++ +++|+
T Consensus 115 ~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls~ 180 (435)
T PLN02268 115 TFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTISL 180 (435)
T ss_pred HHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCch
Confidence 2222211110 012346788888765421 1 12223322111 00 0122222 22333
Q ss_pred hhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEe
Q 014049 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS 327 (431)
Q Consensus 248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A 327 (431)
.. +.......| ...++.+|++.|+++|++ |..|+++++|++|..+ ++. +.|++.+|+++.|
T Consensus 181 ~~-------~~~~~~~~g----~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~a 241 (435)
T PLN02268 181 KS-------WDQEELLEG----GHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFVA 241 (435)
T ss_pred hh-------cCCccccCC----CceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEEc
Confidence 21 000000012 124678899999998854 5579999999999876 343 4677788989999
Q ss_pred CEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 328 HKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 328 d~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
|+||++ |...+......+.|+||+.+....+...++.+.|.++.++++|
T Consensus 242 d~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~f 291 (435)
T PLN02268 242 DAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVF 291 (435)
T ss_pred CEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCC
Confidence 999964 6555443323456778776666555556888999999999885
No 23
>PLN02676 polyamine oxidase
Probab=99.86 E-value=3.3e-20 Score=187.23 Aligned_cols=282 Identities=11% Similarity=0.072 Sum_probs=160.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (431)
..+||||||||++||+||..|+++|. +|+|||+++++||++.+.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~-------------------------------- 72 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA-------------------------------- 72 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC--------------------------------
Confidence 46899999999999999999999998 699999999999999986542
Q ss_pred cccCCCCceeeecCCCeEEee-----CchHHHHHHhcCcccccc-cccccceeeeccCCceeecCCChhhhhccCCCChH
Q 014049 100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173 (431)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~-----~~~~~~~l~~~~~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~ 173 (431)
++.+|+ |++++.. ...+.+++.+.|+..+.. +... ...++..+|+.. +. +.. ..
T Consensus 73 -------g~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~------~~ 132 (487)
T PLN02676 73 -------GVSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVV------QK 132 (487)
T ss_pred -------CeEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHH------HH
Confidence 345677 5787742 346778888888765421 2211 122232244433 10 100 00
Q ss_pred HHHHHHHHHHHHHcccCCCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHhcCCCCcchhhhhhchhhH
Q 014049 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (431)
Q Consensus 174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 250 (431)
-...+..+.+.+....... . ..++.+.++ .+++.... ....... ..+......+..++ .++|+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~~ 201 (487)
T PLN02676 133 SMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKNT 201 (487)
T ss_pred HHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhhc
Confidence 0011111111111111000 0 012234444 33333222 1211111 11111111011111 12232221
Q ss_pred HHHHHHHHhhhccccCCCccEEee--cCCcchHHHHHHHHHHh------cCcEEEeCcceeEEEEecCCCcEEEEEeCCC
Q 014049 251 INRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (431)
Q Consensus 251 ~~~~~~~~~s~~~~g~~~~~~~~p--~gG~~~l~~al~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G 322 (431)
+. ......+| +..++. +||++.|+++|++.+.. .+.+|+||++|++|..+ ++. +.|++.+|
T Consensus 202 ~~-----~~~~~~~g---~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~G 270 (487)
T PLN02676 202 EP-----NPTFVDFG---EDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTEDG 270 (487)
T ss_pred Cc-----ccccccCC---CceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECCC
Confidence 00 00111122 112343 68999999999875532 23689999999999886 343 56888899
Q ss_pred cEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
++++||+||++ |...+......++|+||..+....+...++.+.|.++.++++|
T Consensus 271 ~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~F 325 (487)
T PLN02676 271 SVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKF 325 (487)
T ss_pred CEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCC
Confidence 99999999975 5555443223578889987766666667899999999999985
No 24
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.86 E-value=5.3e-20 Score=183.78 Aligned_cols=276 Identities=16% Similarity=0.159 Sum_probs=168.6
Q ss_pred HHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccCCCCceeeecCCC
Q 014049 36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP 115 (431)
Q Consensus 36 ~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~Gp 115 (431)
+||.+|+++|++|+|||+++++||+++|++.+++ .+.+|. |+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~ 42 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ 42 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence 5899999999999999999999999999875431 123677 68
Q ss_pred eEEeeC-chHHHHHHhcCcccccccccccceeeeccCCce-------eecCCC-hhhhhccCCCChHHHHHHHHHHHHHH
Q 014049 116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-------CSVPDS-RAAIFKDKSLGLMEKNQLMRFFKLVQ 186 (431)
Q Consensus 116 ~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~-------~~~p~~-~~~~~~~~~l~~~~k~~l~~~~~~~~ 186 (431)
+++... ..+.+++.++|++....+.. ....++..++.. .+.|.. ...+.....+++.++..+.+++..+.
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 877653 46788888899877655421 121222212221 111221 11223445677777777766554433
Q ss_pred cccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccC
Q 014049 187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN 266 (431)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~ 266 (431)
... ..++.+.|+.+|++++..++.+.+.+...+....+..++ +++|+..++..+.. .+.....
T Consensus 122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~ 184 (419)
T TIGR03467 122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA 184 (419)
T ss_pred hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence 211 123457899999999888877776444322121133333 34555544333221 1111111
Q ss_pred CCccEEeecCCcchHH-HHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCC
Q 014049 267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS 344 (431)
Q Consensus 267 ~~~~~~~p~gG~~~l~-~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~ 344 (431)
...+.||+||++++. ++|++.+++.|++|++|++|++|..+ +++++.+...+|+++.||+||++ |...+.+++..
T Consensus 185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~ 261 (419)
T TIGR03467 185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG 261 (419)
T ss_pred -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC
Confidence 112789999988776 55888888899999999999999987 45443333357888999999975 55444555421
Q ss_pred chhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 345 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
+...+ .+ +...+..+.+..+.+++++
T Consensus 262 --~~~~~---~l-~~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 262 --EDLGA---LL-TALGYSPITTVHLRLDRAV 287 (419)
T ss_pred --chHHH---HH-hhcCCcceEEEEEEeCCCc
Confidence 11222 22 2224556677777788886
No 25
>PLN02529 lysine-specific histone demethylase 1
Probab=99.86 E-value=5.6e-20 Score=190.66 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=166.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (431)
...||+|||||++||+||..|+++|++|+|||+++++||++.|....+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~-------------------------------- 206 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR-------------------------------- 206 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence 467999999999999999999999999999999999999999976421
Q ss_pred ccCCCCceeeecCCCeEEeeCc--hHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (431)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~ 177 (431)
....+.+|+ |++|+.... ++..+..+.|+.-+ ..+..+ ++..+|.......+ . .+ + ..
T Consensus 207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~-----~~---~-~~ 267 (738)
T PLN02529 207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--S-----NI---E-FI 267 (738)
T ss_pred ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--h-----hH---H-HH
Confidence 001246788 699886543 46666667776432 112211 23335543311110 0 00 0 11
Q ss_pred HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHhcCCCCcchhhhhhchhhHH
Q 014049 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251 (431)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 251 (431)
+.+++..+....... ...+.+.|+.+|++++. +++..+.++.+.+....+....+ ++.
T Consensus 268 ~~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~---~s~---- 331 (738)
T PLN02529 268 FNKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC---LSD---- 331 (738)
T ss_pred HHHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC---hHH----
Confidence 122222222111100 01244678999988643 45555555544321111111100 111
Q ss_pred HHHHHHHhhhc-cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEE
Q 014049 252 NRLALYNSSIG-RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330 (431)
Q Consensus 252 ~~~~~~~~s~~-~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~V 330 (431)
..+..+....+ .++ +...++.||++.|+++|++ +..|+||++|++|..+ ++. +.|+ .+++++.||+|
T Consensus 332 LSl~~~~~~~~~e~~---G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~V 399 (738)
T PLN02529 332 LSAAYWDQDDPYEMG---GDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMV 399 (738)
T ss_pred hhhhHhhhccccccC---CceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEE
Confidence 11122222111 112 3356789999999999875 2359999999999986 333 4565 35678999999
Q ss_pred EEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 331 I~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
|++ |...+.+....++|+||+.+....+...++.+.|.++.++++|
T Consensus 400 IVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 400 LCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred EECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 976 5544443223467888877666656667899999999999985
No 26
>PLN02568 polyamine oxidase
Probab=99.85 E-value=1.8e-19 Score=183.25 Aligned_cols=296 Identities=9% Similarity=0.046 Sum_probs=164.2
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC-----CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccc
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE 92 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~G-----~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (431)
+++...||||||||++||+||.+|+++| ++|+|||+++++||+++|++..
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~------------------------- 55 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG------------------------- 55 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC-------------------------
Confidence 3556689999999999999999999988 9999999999999999997643
Q ss_pred ccccccccccCCCCceeeecCCCeEEee--CchHHHHHHhcCccccc-ccccccc----eeeeccCCceeecCCChhhhh
Q 014049 93 ISNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIF 165 (431)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~~~~~~~-~f~~~~~----~~~~~~~g~~~~~p~~~~~~~ 165 (431)
++.+|+ |++++.. ...+.+++.+.|+.... .|...+. ...+..+|.. ++. ++.
T Consensus 56 --------------g~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~---~~~ 115 (539)
T PLN02568 56 --------------GERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFE--VDP---SIV 115 (539)
T ss_pred --------------CeEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcC--CCH---HHH
Confidence 345777 6887753 34777888888875432 2221111 1112223321 110 000
Q ss_pred ccCCCChHHHHHHHHHHHHHHcccCCCcc---cc--ccccccc-c---ccCCcHHHHHHhcCCChhHHHHHHHH---Hhc
Q 014049 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDES---EE--NNVRISE-E---DLDSPFAEFLTKMKLPHKIKSIVLYA---IAM 233 (431)
Q Consensus 166 ~~~~l~~~~k~~l~~~~~~~~~~~~~~~~---~~--~~~~~~~-~---~~~~s~~~~l~~~~~~~~l~~~~~~~---~~~ 233 (431)
. .-...+..++..+......... .+ ....... . -.+.++.+|+++.- ..++... ...
T Consensus 116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-----~~~~~~~~~p~~~ 184 (539)
T PLN02568 116 E------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-----DAYWDSVSADEQI 184 (539)
T ss_pred H------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-----HHHHhhcccchhh
Confidence 0 0011122222222211000000 00 0000000 0 12347888877410 0000000 000
Q ss_pred CCCCcchhhhhhchhhHHHHHHHHHh-----------hh---ccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeC
Q 014049 234 ADYDQEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLR 299 (431)
Q Consensus 234 ~~~~~~~~~~~~s~~~~~~~~~~~~~-----------s~---~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~ 299 (431)
..+..+. .+++....+..+..+.. +. ..+...+|..+++.||++.|+++|++.+ .++.|+++
T Consensus 185 ~~~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln 260 (539)
T PLN02568 185 KGYGGWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLG 260 (539)
T ss_pred ccccchh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeC
Confidence 0000000 00111111111111110 00 1111112346789999999999998754 35689999
Q ss_pred cceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCC----CCchhhhhhhhhhhcccCCCCeEEEEEEEeCC
Q 014049 300 MPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----ASSHQQLQESFQAFSLSDNKGKVARGICITRS 374 (431)
Q Consensus 300 ~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 374 (431)
++|++|..+ ++. +.|++++|+++.||+||++ |...+.+-. ..++|+||+.+....+...++.+.|.++.+++
T Consensus 261 ~~V~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~ 337 (539)
T PLN02568 261 RKVTRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSP 337 (539)
T ss_pred CeEEEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecC
Confidence 999999886 443 5677889999999999975 554444211 13678898876665566678899999999988
Q ss_pred CC
Q 014049 375 SL 376 (431)
Q Consensus 375 ~~ 376 (431)
+|
T Consensus 338 ~f 339 (539)
T PLN02568 338 RP 339 (539)
T ss_pred CC
Confidence 75
No 27
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.84 E-value=3e-19 Score=186.06 Aligned_cols=280 Identities=13% Similarity=0.117 Sum_probs=163.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (431)
...||+|||||++||+||..|++.|++|+|+|+++++||++.+++..+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~------------------------------- 285 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD------------------------------- 285 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence 3579999999999999999999999999999999999999999876431
Q ss_pred ccCCCCceeeecCCCeEEeeC--chHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049 101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (431)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~--~~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~ 177 (431)
.-.+.+|+ |++++... ..+..++.+.|+..+ .+...+ ++..+|+.+....+ ...+ ..
T Consensus 286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~----~~~~~~~~~~~dG~~~~~~~~----------~~v~-~~ 345 (808)
T PLN02328 286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLH----KVRDICPLYLPDGKAVDAEID----------SKIE-AS 345 (808)
T ss_pred ----CcceeccC-CceeecCCCccHHHHHHHHcCCceE----ecCCCceEEeCCCcCcchhhh----------hhHH-HH
Confidence 01235677 68887543 256667777886432 111211 22235543321100 0001 22
Q ss_pred HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhcCCCCcchhhhhhchhhHH
Q 014049 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251 (431)
Q Consensus 178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 251 (431)
+.+++..+....... .. .....+.|+.++++++ ..++..+.++.+.++..-+.... .+ ..+
T Consensus 346 f~~lL~~~~klr~~~---~~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs---~l---s~L 412 (808)
T PLN02328 346 FNKLLDRVCKLRQAM---IE----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS---LM---SNL 412 (808)
T ss_pred HHHHHHHHHHHHHhh---hh----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh---hH---HHH
Confidence 223333322111100 00 0112356888888743 23444444443322211111100 00 001
Q ss_pred HHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE
Q 014049 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (431)
Q Consensus 252 ~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI 331 (431)
.+..+.... .+ ...+...+..||++.|+++|++.+ + |+++++|++|..+ ++. +.| +.+|++++||+||
T Consensus 413 -Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~VI 480 (808)
T PLN02328 413 -SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMVL 480 (808)
T ss_pred -Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEEE
Confidence 111111110 01 111235678999999999997643 3 9999999999986 333 344 4578899999999
Q ss_pred EC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 332 ~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
++ |...+.+..+.+.|+||..+....++..++.+.|.++.++++|
T Consensus 481 vTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~F 526 (808)
T PLN02328 481 CTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNF 526 (808)
T ss_pred ECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 75 5555443223467788877666556667889999999998875
No 28
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.83 E-value=7e-20 Score=174.89 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=76.9
Q ss_pred EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhh
Q 014049 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL 349 (431)
Q Consensus 271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l 349 (431)
.+.+.|||+.|++|+++ ++|..|.++++|.+|.+++ +| |.|++.+.+++.||.|||. |..++..+ .++|.+
T Consensus 201 ~~~~~GGmd~la~Afa~---ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI--~f~P~l 272 (450)
T COG1231 201 MLQRLGGMDQLAEAFAK---QLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQI--DFAPLL 272 (450)
T ss_pred hhccCccHHHHHHHHHH---HhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhhc--ccCCCC
Confidence 44666999999999974 6789999999999999872 33 5677666578999999986 54444553 466667
Q ss_pred hhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 350 QESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
+..+.+..+...++...|..+-+++||
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpF 299 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPF 299 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchh
Confidence 777777766788899999999999987
No 29
>PLN03000 amine oxidase
Probab=99.82 E-value=7.1e-18 Score=175.74 Aligned_cols=278 Identities=13% Similarity=0.098 Sum_probs=158.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (431)
...||+|||||++||+||..|++.|++|+|+|+++++||++.|.+.++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g-------------------------------- 230 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA-------------------------------- 230 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence 457999999999999999999999999999999999999999987542
Q ss_pred ccCCCCceeeecCCCeEEeeCc--hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (431)
Q Consensus 101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l 178 (431)
....+.+|+ |++++.... .+..++.+.|+.-+ .+..-.+. +..+|+.. +.+.... ....+
T Consensus 231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~l--y~~~Gk~v--~~~~~~~---------ve~~f 292 (881)
T PLN03000 231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCPL--YRVDGKPV--DPDVDLK---------VEVAF 292 (881)
T ss_pred ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCeE--EEeCCcCC--chhhhhh---------HHHHH
Confidence 012466888 689886543 45556677887533 22221222 22356543 2111000 00111
Q ss_pred HHHHHHHHcccCCCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHH
Q 014049 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (431)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 252 (431)
.+++..+..+..... ....+.++.++++. ....+..+.++.+.+....+.... .+ ..+
T Consensus 293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as---~l---s~L- 356 (881)
T PLN03000 293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG---LV---SKL- 356 (881)
T ss_pred HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc---CH---HHH-
Confidence 122222111110000 00112334333321 122232233332221111111000 00 001
Q ss_pred HHHHHHhhh-ccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE
Q 014049 253 RLALYNSSI-GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (431)
Q Consensus 253 ~~~~~~~s~-~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI 331 (431)
.+..+.... ..++ +......||++.|+++|++.+ .|+++++|++|..+ ++. +.|++ +++++.||+||
T Consensus 357 Sl~~wdqd~~~e~~---G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VI 424 (881)
T PLN03000 357 SLAFWDQDDPYDMG---GDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVL 424 (881)
T ss_pred HHHHhhhcccccCC---CceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEE
Confidence 111111110 1112 235678899999999998644 39999999999886 333 45654 44689999999
Q ss_pred EC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 332 ~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
++ |...+..-.+.++|+||+.+....++..++.+.|.++.++++|
T Consensus 425 vTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~F 470 (881)
T PLN03000 425 CTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVF 470 (881)
T ss_pred EcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence 75 6555552223578889987776666778899999999999875
No 30
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.78 E-value=5.1e-17 Score=162.59 Aligned_cols=244 Identities=12% Similarity=0.162 Sum_probs=147.6
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccc
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI 93 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (431)
-+.+..+|+|||||++||+||.+|++. |++|+|||+++++||++.++...
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~-------------------------- 71 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNP-------------------------- 71 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccc--------------------------
Confidence 345567999999999999999999996 68999999999999999886432
Q ss_pred cccccccccCCCCceeeecCCCeEEeeCchHHHHHHhc------C---ccccccccccccee---ee-ccCCceeecCCC
Q 014049 94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF---ML-DADAKLCSVPDS 160 (431)
Q Consensus 94 ~~~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~------~---~~~~~~f~~~~~~~---~~-~~~g~~~~~p~~ 160 (431)
..+|.++. ||.....-..+.+++.+. | .++|..+.+.++.| .+ ..+|..+..+
T Consensus 72 -----------~~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~-- 137 (576)
T PRK13977 72 -----------EKGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTD-- 137 (576)
T ss_pred -----------cCCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECc--
Confidence 12455555 465422223455555433 1 24666676666553 11 1123222211
Q ss_pred hhhhhccCCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcch
Q 014049 161 RAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (431)
Q Consensus 161 ~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (431)
. -.|+..++..+.+++- .. ..+..+.++.||++.......+-. +...+..+.
T Consensus 138 ---~---~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~---~w~t~FaF~--- 189 (576)
T PRK13977 138 ---K---FGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWY---YWRTMFAFE--- 189 (576)
T ss_pred ---C---CCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHH---HHHHHHCCc---
Confidence 0 1233333333433221 11 123556889999987444332221 111222222
Q ss_pred hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCC--CcEEEE
Q 014049 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKGV 317 (431)
Q Consensus 241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~gV 317 (431)
+..|+.+....+.+|+..+...+.. .++.+.+|- ...|++.|.+.++++|++|+++++|++|..+.++ +++++|
T Consensus 190 --~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI 266 (576)
T PRK13977 190 --KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI 266 (576)
T ss_pred --hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence 2356777666666676655444322 124444554 3689999999999999999999999999884223 678898
Q ss_pred EeC-CCc--E---EEeCEEEE
Q 014049 318 RLA-SGQ--D---ILSHKLVL 332 (431)
Q Consensus 318 ~~~-~G~--~---i~Ad~VI~ 332 (431)
++. +|+ + ..+|.||+
T Consensus 267 ~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 267 HLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred EEEeCCceeEEEecCCCEEEE
Confidence 875 332 2 35788884
No 31
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=3.8e-17 Score=163.59 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=73.1
Q ss_pred EeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCCCCCCCCCCCchhhhh
Q 014049 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQ 350 (431)
Q Consensus 272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~l~~~~~~~l~ 350 (431)
....+|+..+..+++. |..|+++..|.+|.... ++. +.|++.++..+.||+||+ .|-..+..-.+.+.|+||
T Consensus 212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 4568899999887754 99999999999999972 443 345556677799999885 454444432246788898
Q ss_pred hhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 351 ESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
..+....++--.+.+.|.++.+++.|
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~f 310 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVF 310 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEecccc
Confidence 88777666656788899999888865
No 32
>PLN02976 amine oxidase
Probab=99.74 E-value=1.4e-16 Score=170.65 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=76.6
Q ss_pred cEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecC-------CCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCC
Q 014049 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (431)
Q Consensus 270 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l 341 (431)
..+.+.||++.|+++|++.+ .|+||++|++|..... ++.-+.|++.+|+++.||+||++ |...+..-
T Consensus 927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 45678999999999997643 4999999999987310 12225677889999999999975 54444421
Q ss_pred CCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (431)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (431)
.+.++|+||..+....+...++.+.|.++.++++|
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpF 1036 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVF 1036 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCcc
Confidence 13578899987766556667899999999999885
No 33
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.71 E-value=3.3e-15 Score=140.75 Aligned_cols=246 Identities=19% Similarity=0.228 Sum_probs=153.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEE--EccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~v--lE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (431)
..+|+|+|||++||+||++|++.+-+|+| +|+.+|+||..+|..-+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~-------------------------------- 58 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ-------------------------------- 58 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence 36899999999999999999999988755 99999999999992211
Q ss_pred cccCCCCceeeecCCCeEEeeCc----hHHHHHHhcCccccccccccc-c----eeeeccCCceeecCCChhhhhccCCC
Q 014049 100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLEFKSID-A----TFMLDADAKLCSVPDSRAAIFKDKSL 170 (431)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~~~~~~~----~~~~~l~~~~~~~~~~f~~~~-~----~~~~~~~g~~~~~p~~~~~~~~~~~l 170 (431)
..|-++. ||.-+-..+ ...+++.++|+++-+.-.+.+ + .|++ ..|++..+|.+....... .+
T Consensus 59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~-~l 129 (491)
T KOG1276|consen 59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF-SL 129 (491)
T ss_pred ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc-cc
Confidence 2334445 465543333 377888999997654332222 1 3333 478888888865442111 12
Q ss_pred ChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcCCCCcchhhhhhchhh
Q 014049 171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (431)
Q Consensus 171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 249 (431)
.+.-|..+..|+....+... ..+-.++++.+|.++ |+ +++.+.+...+.-+.|..|+ +++|.+.
T Consensus 130 ~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk~ 194 (491)
T KOG1276|consen 130 QPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMKS 194 (491)
T ss_pred CcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHHH
Confidence 23344444444433211110 123457899999985 55 45555554444444566665 5577777
Q ss_pred HHHHHHHHHhhhcc---------cc--------------C--CCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeE
Q 014049 250 GINRLALYNSSIGR---------FQ--------------N--ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVIS 304 (431)
Q Consensus 250 ~~~~~~~~~~s~~~---------~g--------------~--~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~ 304 (431)
++..+.......|. ++ . ..-+.+-.+||+..++++|++.+.+.+..|.++-++..
T Consensus 195 ~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~ 274 (491)
T KOG1276|consen 195 SFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSG 274 (491)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhccccccc
Confidence 76655543322210 00 0 01113457999999999999999888889999999998
Q ss_pred EEEecCCCcEEEEEeCCCc
Q 014049 305 LLTDQNSGSYKGVRLASGQ 323 (431)
Q Consensus 305 I~~~~~~g~~~gV~~~~G~ 323 (431)
+.....++...+.+..+++
T Consensus 275 ~sk~~~~~~~~tl~~~~~~ 293 (491)
T KOG1276|consen 275 NSKSRSGNWSLTLVDHSGT 293 (491)
T ss_pred ccccccCCceeEeEcCCCc
Confidence 8765434444455545554
No 34
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.68 E-value=9.7e-17 Score=160.40 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=77.8
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhh
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF 356 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~ 356 (431)
++.+...+...+...|++|++|++|++|..+ ++++ .|.+.+|+++.||+||++ |...+.++ ...++++......
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i--~~~p~l~~~~~~a 282 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKNI--LLLPPLPEDKRRA 282 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHTS--EEESTSHHHHHHH
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhhh--hhccccccccccc
Confidence 4444455556667788999999999999998 6664 677899999999999975 44333331 2345566533332
Q ss_pred cccCCCCeEEEEEEEeCCCCCCCC-CceEEEeCCCCCCCCCCCeEEEEEecCCCcc
Q 014049 357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAV 411 (431)
Q Consensus 357 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~ 411 (431)
.+...+..+.+.++.+++++.... ....++.++. . .+..++...+.....
T Consensus 283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~ 333 (450)
T PF01593_consen 283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDG---F--SPIGYVSDPSKFPGR 333 (450)
T ss_dssp HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESS---T--SSEEEEEEECCTTSC
T ss_pred ccccccCcceeEEEeeecccccccccccceecccC---c--cccccccccccCccc
Confidence 244445666777777888764332 3445555444 1 446666666654444
No 35
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.67 E-value=8.2e-15 Score=134.45 Aligned_cols=257 Identities=15% Similarity=0.133 Sum_probs=143.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (431)
..+|.|||+|++||+||..|++. ++|+++|+++++||+++|...+-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--------------------------------- 53 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--------------------------------- 53 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence 35899999999999999999987 89999999999999999975320
Q ss_pred cCCCCceeeecCCCeEEeeC---chHHHHHHhcCcccccccccccceeeeccCCceeecCC--Chhhhhcc--CCCChHH
Q 014049 102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD--SRAAIFKD--KSLGLME 174 (431)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~---~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~l~~~~ 174 (431)
...++.+|. | .+++.. ..+.+++.+.|++....+....- .+ |+.-.++.. ....+|.. ..+.+
T Consensus 54 --d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~--d~gglEy~g~tgl~~L~aqk~n~l~p-- 123 (447)
T COG2907 54 --DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SL--DMGGLEYSGLTGLAGLLAQKRNLLRP-- 123 (447)
T ss_pred --cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Ee--cCCceeeccCCCccchhhccccccch--
Confidence 012334454 2 222211 25888899999876544433211 11 222222221 11123321 11112
Q ss_pred HHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHH
Q 014049 175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254 (431)
Q Consensus 175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 254 (431)
++.++++.+......... ..+ .....+.++.+||++.+.+...++-+.+.+....++... .+++..++. .+
T Consensus 124 --Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~--~d~~~~pa~-~~ 194 (447)
T COG2907 124 --RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPL--ADASRYPAC-NF 194 (447)
T ss_pred --hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcH--hhhhhhhHH-HH
Confidence 222233332222211100 001 123456899999999999987776554322111122111 112222221 22
Q ss_pred HHHHhhhccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-
Q 014049 255 ALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL- 332 (431)
Q Consensus 255 ~~~~~s~~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~- 332 (431)
..+....|..--.+.+ +..+.||+.+-+|.| ++..+++|.++++|.+|..-. +|. -|...+|++-+.|.||+
T Consensus 195 ~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~l---aa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vViA 268 (447)
T COG2907 195 LVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRL---AADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVVIA 268 (447)
T ss_pred HHHHhccCceecCCCCceeEcccchHHHHHHH---hccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceeeee
Confidence 2333322221111123 444788999888855 467889999999999998863 663 33345699999999773
Q ss_pred -CCCCC
Q 014049 333 -DPSFT 337 (431)
Q Consensus 333 -~p~~~ 337 (431)
.|++.
T Consensus 269 th~dqA 274 (447)
T COG2907 269 THPDQA 274 (447)
T ss_pred cChHHH
Confidence 57765
No 36
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.57 E-value=1.3e-13 Score=132.24 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=76.3
Q ss_pred eecCCcchHHHHHHHHHH----hcC--cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC-CCCCC-CCCC
Q 014049 273 YPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS-FTVPG-SLAS 344 (431)
Q Consensus 273 ~p~gG~~~l~~al~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~-~~~~~-l~~~ 344 (431)
...-|...+.+-|.+.+. ++| ++++++++|.+|..+ +.++ +.|++.||+.+.||+||++-+ -.+.+ -..-
T Consensus 217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~l 294 (498)
T KOG0685|consen 217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHHKL 294 (498)
T ss_pred echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCc-EEEEEeCCcEEeccEEEEEeechhhhhhhhhh
Confidence 344566666665554322 234 677777999999886 3455 578999999999999997533 11121 1113
Q ss_pred chhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC-CCCceEEEeCCC
Q 014049 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPR 390 (431)
Q Consensus 345 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 390 (431)
+.|+||..+....++...|.+-|.++=+++||-+ +-...+++.-..
T Consensus 295 F~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e 341 (498)
T KOG0685|consen 295 FVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDE 341 (498)
T ss_pred cCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecC
Confidence 6888998777766666778888988889887533 334455554443
No 37
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.7e-13 Score=133.85 Aligned_cols=251 Identities=16% Similarity=0.142 Sum_probs=140.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (431)
.|+|+|||++||+||..|+++|++|+|+|+++++||+++++.... ++|.
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~~------------------------------ 50 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNHV------------------------------ 50 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCee------------------------------
Confidence 599999999999999999999999999999999999999987532 0110
Q ss_pred CCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeec--cCCce--eecCCC------hhhhhccCCCCh
Q 014049 104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKL--CSVPDS------RAAIFKDKSLGL 172 (431)
Q Consensus 104 ~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~--~~g~~--~~~p~~------~~~~~~~~~l~~ 172 (431)
+. |=++++.. -.++.+|.+.+.+..+.++.....|+-. ..|.. +..|.. ..+.++.+.+..
T Consensus 51 -------E~-glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~ 122 (485)
T COG3349 51 -------EH-GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR 122 (485)
T ss_pred -------ee-eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence 11 23333322 2577888888887666666544433211 12221 111111 112222333333
Q ss_pred HHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHH-HHHHH-HHhcCCCCcchhhhhhchhhH
Q 014049 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVLY-AIAMADYDQEVSEYVLKTRDG 250 (431)
Q Consensus 173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~~~~-~~~~~~~~~~~~~~~~s~~~~ 250 (431)
.+|..+ +-.+..... .......+..+.++.+||++.+..+... +.+.- ...+. |. ++ +..|.+..
T Consensus 123 ~~~~~~---~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~-f~-~~--e~~sa~~~ 189 (485)
T COG3349 123 REKIRF---VLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALT-FI-DP--EGCSARFF 189 (485)
T ss_pred HHHhHH---hhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhc-cc-Cc--ccCcchhH
Confidence 333331 111100000 0012245677899999999977765433 22221 11111 11 11 22344433
Q ss_pred HHHHHHHHhhhccccCCCccEEeecCCcc-hHHHHHHHHHHhcCcEEEeCcceeEEEEec--CCCcEEEEEeCCCcEEEe
Q 014049 251 INRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDILS 327 (431)
Q Consensus 251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~-~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~~~~G~~i~A 327 (431)
+..+..++. ...+. +-....+|+.. -+.+.+.+.+.+.|.+++++.+|+.|..+. .+.+++|+.+. +....+
T Consensus 190 lt~~~~~~~--~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~ 264 (485)
T COG3349 190 LTILNLFLI--VTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ 264 (485)
T ss_pred HHHHHHHHH--hccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence 333322221 12121 11335677755 455777788888999999999999998862 23457788765 655555
Q ss_pred CEEE
Q 014049 328 HKLV 331 (431)
Q Consensus 328 d~VI 331 (431)
..++
T Consensus 265 ~~~~ 268 (485)
T COG3349 265 QAAL 268 (485)
T ss_pred eehh
Confidence 5544
No 38
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.42 E-value=3.9e-13 Score=97.54 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=38.1
Q ss_pred EECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChh
Q 014049 27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA 67 (431)
Q Consensus 27 IIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~ 67 (431)
|||||++||+||.+|+++|++|+|+|+++++||+++++..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence 89999999999999999999999999999999999998653
No 39
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.40 E-value=4.3e-12 Score=123.18 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=40.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 65 (431)
+||+|||||++||++|..|++.|.+|+|+|+++++||.+.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~ 44 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV 44 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec
Confidence 7999999999999999999999999999999999999887753
No 40
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.38 E-value=1.3e-11 Score=116.65 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=51.6
Q ss_pred EEeec-CCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 271 ~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
-++|. .....|.++|.+.+++.|++|+++++|.+|..+ + ....|.+++|++++||.+|+
T Consensus 102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence 35787 779999999999999999999999999999876 3 34678888998999999884
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.36 E-value=1.7e-11 Score=119.38 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=52.9
Q ss_pred EEeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
++++.+| ...+.++|.+.+++.|++|+.+++|++|..+ ++++.+|++.+|+ ++||+||..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence 6678888 7899999999999999999999999999998 7888889998887 999999954
No 42
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.27 E-value=2.1e-11 Score=119.96 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=48.5
Q ss_pred EEeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
..||.-. ...+.++|.+.++++|++|+++++|+.|..+ ++.+..|++++++++.||+||+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence 4688764 7899999999999999999999999999987 6777889987888999999995
No 43
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.22 E-value=3.6e-10 Score=110.34 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=50.3
Q ss_pred EEeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcE-EEeCEEEEC
Q 014049 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD 333 (431)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~Ad~VI~~ 333 (431)
.+.|.+| .+++..+|++.+..+|++++||++|+.|..+ ++.++.+.+.+|++ ++|+.||..
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~--~dg~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQ--SDGVFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEe--CCceEEEEecCCcEEEEeeEEEEC
Confidence 5566676 4688999999999999999999999999987 33356677788887 999999953
No 44
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=2.1e-10 Score=104.99 Aligned_cols=99 Identities=20% Similarity=0.384 Sum_probs=69.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (431)
++|.+|||||++|++.|..|++.|++|+|+||++++||+|-+...+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~--------------------------------- 47 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ--------------------------------- 47 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC---------------------------------
Confidence 38999999999999999999999999999999999999999865431
Q ss_pred cCCCCceeeecCCCeEEeeCch-HHHHHHhcCcccccccccccceeeeccCCceeecCCChh
Q 014049 102 SQHPRNFNLDVSGPRVLFCADH-AVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRA 162 (431)
Q Consensus 102 ~~~~~~~~~dl~Gp~~~~~~~~-~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~ 162 (431)
.+-.+.--||+++.+.+. ..+.+ .++.+|......-.-..+|..+.+|.+..
T Consensus 48 ----tGIlvHkYGpHIFHT~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~ 100 (374)
T COG0562 48 ----TGILVHKYGPHIFHTDNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFNLN 100 (374)
T ss_pred ----CCeEEeeccCceeecCchHHHHHH-----hhhhhhhhhccceeEEECCeeeeccccHH
Confidence 011112228999877663 33333 23445544333222123788999998753
No 45
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.16 E-value=7.9e-10 Score=109.57 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=47.3
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
++.|.+|. ..+.++|.+.++..|++++++++|.+|..+ ++. +.|++.+| +++||.||..
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A 199 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC 199 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence 55666663 688999999999999999999999999765 444 46777666 7999999853
No 46
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.15 E-value=2.6e-09 Score=108.02 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=45.2
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
++.+.+|. ..++++|.+.++..|++|+.+++|.+|.. ++. +.|++.+| +++||+||+
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t~~g-~v~A~~VV~ 231 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQP-AVVRTPDG-QVTADKVVL 231 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCc-eEEEeCCc-EEECCEEEE
Confidence 55677773 57889999999999999999999999963 232 56777666 699999885
No 47
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.07 E-value=2e-09 Score=106.15 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=44.8
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
++.+.+|. ..+.++|.+.++..|++++.+++|.+|..+ ++. +.|++++| ++.||+||+
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~ 194 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV 194 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence 44566663 478888988888999999999999999875 454 45776555 799998774
No 48
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.06 E-value=3.5e-09 Score=107.35 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=47.7
Q ss_pred eecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CC--cEEEeCEEEEC
Q 014049 273 YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD 333 (431)
Q Consensus 273 ~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G--~~i~Ad~VI~~ 333 (431)
++.+|...+.+.|.+.+++.|++|+++++|++|..+ ++++++|++. +| ..++|+.||+.
T Consensus 125 ~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA 187 (466)
T PRK08274 125 FFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA 187 (466)
T ss_pred eecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence 345666788999999999999999999999999886 7888888763 33 35799999853
No 49
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=9.9e-09 Score=105.75 Aligned_cols=48 Identities=29% Similarity=0.477 Sum_probs=42.3
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 15 ~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
..+..+.++||||||+| +|++||+..+++|.+|+||||.+.+||.+..
T Consensus 9 ~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 9 GTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred CCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence 33445568999999999 9999999999999999999999999997763
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.00 E-value=7.7e-09 Score=101.88 Aligned_cols=58 Identities=28% Similarity=0.268 Sum_probs=44.7
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
.+.|.+|. ..+.+++.+.+...|++++++++|++|..+ ++. +.|++++| +++||+||.
T Consensus 138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~ 198 (376)
T PRK11259 138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV 198 (376)
T ss_pred EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence 44566663 467777878888899999999999999876 444 46877666 799999884
No 51
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.99 E-value=1.1e-08 Score=103.31 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=47.3
Q ss_pred EEeecCC-c---chHHHHHHHHHHh----cC--cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 271 ~~~p~gG-~---~~l~~al~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.+.|..| . +.++++|.+.++. .| ++|+++++|+.|..+ ++..+.|++.+| +++||.||+.
T Consensus 199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva 268 (497)
T PTZ00383 199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS 268 (497)
T ss_pred EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence 5567543 2 6899999999988 78 678999999999875 566678887766 6999998854
No 52
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.98 E-value=1.1e-08 Score=105.50 Aligned_cols=61 Identities=26% Similarity=0.281 Sum_probs=47.6
Q ss_pred cEEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CC--cEEEeCEEEEC
Q 014049 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVLD 333 (431)
Q Consensus 270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~Ad~VI~~ 333 (431)
++++|. |. ..+..++++.+..+|++++.+++|+.|..+ ++++++|++. +| .+|+||+||..
T Consensus 138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVnA 206 (546)
T PRK11101 138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVNA 206 (546)
T ss_pred EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEEC
Confidence 366674 42 477888888889999999999999999876 7788888763 23 36899999843
No 53
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.95 E-value=5.4e-08 Score=99.48 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
.++||||||+|.+||+||+.++++|.+|+||||.+..||...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 478999999999999999999999999999999999999643
No 54
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.94 E-value=4.4e-08 Score=97.68 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=36.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
+||||||||+.|+++|..|+++|++|+||||++.+|+-++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as 41 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS 41 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence 6999999999999999999999999999999998765443
No 55
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.94 E-value=2.1e-08 Score=92.58 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFT 337 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~ 337 (431)
.-..+|...++.+|+.++-+..|..+....+.+..++|++++|..+.|+++|.+ ..++
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 344677888899999999999999998655577778999999999999998853 4443
No 56
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.92 E-value=4e-08 Score=98.22 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (431)
Q Consensus 277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~ 332 (431)
+...+.+.|.+.++++|++|+++++|+++.++ +++++||+.. +|+ +++|+.||+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence 45688999999999999999999999999998 8899999876 455 478999985
No 57
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.92 E-value=8.4e-10 Score=96.48 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=36.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.++||+|||||.+||+||++|+++|+||+|+|++..+||..+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 3689999999999999999999999999999999999987664
No 58
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.91 E-value=5.2e-08 Score=97.36 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=47.9
Q ss_pred cEEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
++++|..|. ..+.++|.+.++..|++|+.+++|++|..+ ++++++|++. +.+++||+||.
T Consensus 189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~ 251 (416)
T PRK00711 189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV 251 (416)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence 355676653 477899999999999999999999999876 6666678765 45799999885
No 59
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.90 E-value=4.3e-08 Score=103.61 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=47.3
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
+++|.+|. ..+.++|.+.+.. |++++.+++|++|..+ ++.+ .|++.+|+.+.||+||.
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~ 457 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVL 457 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEE
Confidence 66787774 5888999988888 9999999999999876 5554 48877787788999884
No 60
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.88 E-value=1e-07 Score=94.96 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=46.3
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
++.+.+|. ..++.+|++.+...|++++.+++|++|..+ +++++++|++.+| ++.|++||++
T Consensus 172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVva 235 (407)
T TIGR01373 172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGVA 235 (407)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEEC
Confidence 44455553 367788888889999999999999999754 2566778887777 6999987753
No 61
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.88 E-value=1.4e-09 Score=94.51 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=39.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+-||||||||.+||+||++||++|.||+|+|++..+||-.+-
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence 569999999999999999999999999999999999986653
No 62
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=5.5e-09 Score=93.58 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=42.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhh
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~ 68 (431)
+++|||+||+||+||..|+.+|++|+|+||..-+|||..|-++++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~ 47 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG 47 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence 699999999999999999999999999999999999999987654
No 63
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.79 E-value=7.6e-08 Score=96.16 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=43.4
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (431)
Q Consensus 17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 65 (431)
.+.+.++||+|||||++|+-+|+.++.+|++|+++|++|.-.|..+..+
T Consensus 7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrst 55 (532)
T COG0578 7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRST 55 (532)
T ss_pred cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccc
Confidence 3445789999999999999999999999999999999999988766543
No 64
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.78 E-value=6.4e-09 Score=103.08 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=40.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+|||||||||++|++||++|+++|++|+|||+++.+|.+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4699999999999999999999999999999999999997776
No 65
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.74 E-value=7.6e-07 Score=87.45 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=38.2
Q ss_pred ccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCcccccC
Q 014049 23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLS 65 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~ 65 (431)
.++-|||+|+++|+||++|-|. |.++++||+.+.+||.+....
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 5788999999999999999876 569999999999999987653
No 66
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.70 E-value=1.6e-08 Score=93.47 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||+|||||.+||+||++|+++|++|+|+||+..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 36899999999999999999999999999999999999864
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.69 E-value=1.9e-08 Score=93.26 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||+|||||++||+||+.|+++|++|+|+|++..+||..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 36899999999999999999999999999999999999864
No 68
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.68 E-value=2.1e-08 Score=100.43 Aligned_cols=41 Identities=29% Similarity=0.469 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
++|||||||||++|++||+.|+++|++|+|+||++.+|.+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~ 44 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN 44 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc
Confidence 46999999999999999999999999999999999988753
No 69
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.64 E-value=4.3e-07 Score=90.09 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=48.7
Q ss_pred EeecC-CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCCCCCCC
Q 014049 272 IYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG 340 (431)
Q Consensus 272 ~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~ 340 (431)
.||.. ....+.++|.+.+++.|++++++++|++|..+ ++ .+.|++ +++++.||.||+ .....++.
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVILATGGLSYPQ 163 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence 46544 36789999999999999999999999999764 44 356776 577899999985 34433343
No 70
>PRK10015 oxidoreductase; Provisional
Probab=98.63 E-value=3.2e-08 Score=98.97 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=37.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
++|||||||||++|++||+.|+++|++|+|+||++.+|-+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 4699999999999999999999999999999999987654
No 71
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.62 E-value=3.4e-08 Score=100.09 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=41.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
.+.+|||+|||||.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~ 47 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT 47 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence 4567999999999999999999999999999999999999987543
No 72
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.62 E-value=4.1e-08 Score=98.05 Aligned_cols=46 Identities=22% Similarity=0.467 Sum_probs=41.1
Q ss_pred CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 12 ~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
+|..|.-+...+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 8 ~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 8 SPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 4566666667899999999999999999999999999999999865
No 73
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=4.5e-08 Score=99.14 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=40.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+|||+|||+|.+|++||.++++.|++|+++|+++.+||.|..
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 4699999999999999999999999999999998899998754
No 74
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.58 E-value=7.3e-07 Score=89.55 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=49.1
Q ss_pred EeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-CcEEEeCEEEE
Q 014049 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL 332 (431)
Q Consensus 272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~~i~Ad~VI~ 332 (431)
.++.++...+.++|.+.++++|++|+++++|++|..+++++++++|...+ +.+++|+.||+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 35666777899999999999999999999999998752247788887543 35799999885
No 75
>PRK07121 hypothetical protein; Validated
Probab=98.58 E-value=7.2e-08 Score=98.42 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
.++||||||+|.+||+||+.++++|.+|+||||+...||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 468999999999999999999999999999999999999654
No 76
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.57 E-value=6.5e-08 Score=97.25 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
....+|+|||||.+||+||..|+++|++|+|+|+++.+||.|..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34579999999999999999999999999999999999999864
No 77
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.54 E-value=7.2e-08 Score=97.09 Aligned_cols=43 Identities=16% Similarity=0.402 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG~~~t 63 (431)
++|||||||||.+|++||.+|+++|++|+|+|+.+ .+||.|..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 56999999999999999999999999999999987 48998754
No 78
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.53 E-value=7.4e-08 Score=93.64 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 489999999999999999999999999999998764
No 79
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.52 E-value=8.5e-08 Score=96.46 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC-CCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~-~GG~~~ 62 (431)
.+|||||||||.+|++||..|++.|++|+++|+++. +||.|.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 469999999999999999999999999999999875 799764
No 80
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.51 E-value=1.2e-07 Score=95.29 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=36.5
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 16 ~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
+++...+|||+|||||++|++||..|+++|++|+|+|++..
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 44555679999999999999999999999999999999853
No 81
>PRK06370 mercuric reductase; Validated
Probab=98.51 E-value=1.1e-07 Score=96.32 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=39.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
++.+|||||||+|.+|++||.+|++.|++|+++|+. .+||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 567899999999999999999999999999999996 67776654
No 82
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.50 E-value=1.2e-07 Score=95.04 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCcccccChhh
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD 68 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~t~~~~~ 68 (431)
.++.+||+|||||++||++|++|.++|.. ++||||++.+||.++....++
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 45679999999999999999999999999 999999999999988755443
No 83
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.50 E-value=1.3e-07 Score=96.77 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=39.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
|++.|||||||||+.|+++|..|+++|++|+|+||++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 34569999999999999999999999999999999988777553
No 84
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.50 E-value=1.2e-07 Score=96.07 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+.+|||||||||.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n 45 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN 45 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence 44699999999999999999999999999999999999997643
No 85
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.49 E-value=1.3e-07 Score=93.67 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=36.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
+++..+||||||||++||++|..|+++|++|+|+|+++.+
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 4566799999999999999999999999999999999865
No 86
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.49 E-value=1.2e-07 Score=94.95 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=34.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
||||||||++|++||+.+|++|.+|+++|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998764
No 87
>PRK06116 glutathione reductase; Validated
Probab=98.48 E-value=1.1e-07 Score=95.93 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=38.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+|||+|||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 4699999999999999999999999999999996 89997754
No 88
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.48 E-value=1.4e-07 Score=89.40 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
|||+|||||++||++|+.|++.|.+|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999998875
No 89
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.48 E-value=1.4e-07 Score=95.66 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
|.+|||||||||.+|++||.+|++.|++|+|+|+ +.+||.|..
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 3569999999999999999999999999999999 789998754
No 90
>PTZ00058 glutathione reductase; Provisional
Probab=98.46 E-value=2e-07 Score=95.83 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=43.4
Q ss_pred CCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 11 PVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 11 ~~~~-~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
|+|. ++.....+|||||||+|.+|++||..+++.|++|+++|++ .+||.|-.
T Consensus 36 ~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 36 SAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 4444 4443445799999999999999999999999999999996 79998765
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.45 E-value=1.7e-07 Score=94.99 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+|||||||||++|+.||..|++.|++|+|+|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 38999999999999999999999999999999 899998764
No 92
>PRK08013 oxidoreductase; Provisional
Probab=98.45 E-value=1.8e-07 Score=93.05 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
|+++||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 34689999999999999999999999999999999864
No 93
>PRK09126 hypothetical protein; Provisional
Probab=98.45 E-value=1.8e-07 Score=92.72 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
++||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 39 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA 39 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence 6999999999999999999999999999999998753
No 94
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.44 E-value=1.7e-07 Score=94.46 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+|||+|||+|.+|++||.++++.|++|+++|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 59999999999999999999999999999999 589998764
No 95
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.44 E-value=2e-07 Score=94.51 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=39.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
+.+|||||||+|.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~ 45 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV 45 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence 34699999999999999999999999999999985 788877653
No 96
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.44 E-value=2.2e-07 Score=94.95 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=38.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
++.+|||+|||||+.|+++|+.|+++|.+|+||||++..+|...
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 35569999999999999999999999999999999987665544
No 97
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.42 E-value=2.2e-07 Score=91.85 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=33.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+++||+|||||++||++|+.|+++|++|+|+|+++
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 45899999999999999999999999999999875
No 98
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.42 E-value=2.3e-07 Score=94.02 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+|||||||||.+|++||..|++.|++|+++|++. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46999999999999999999999999999999987 9997754
No 99
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.42 E-value=2.5e-07 Score=94.02 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
..|||||||||.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~ 45 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK 45 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence 4799999999999999999999999999999996 889988653
No 100
>PRK07045 putative monooxygenase; Reviewed
Probab=98.42 E-value=2.5e-07 Score=91.62 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=35.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
+..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 45789999999999999999999999999999999864
No 101
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.41 E-value=2.3e-07 Score=93.51 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+|||+|||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence 599999999999999999999999999999995 68997753
No 102
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.41 E-value=2.6e-07 Score=91.58 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
..+.+.|.+.++..|++++.+++|++|..+ ++. +.|++++|++++||.|| ++..
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG~ 167 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAADGA 167 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEecCC
Confidence 466777778888889999999999999875 444 45777889999999988 4543
No 103
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.41 E-value=9.7e-06 Score=79.55 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC--cEEEeCEEEE-CCCC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF 336 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~-~p~~ 336 (431)
..+.++|.+.++.+|++++.+++|.++..+ ++++++|.+.++ .+++||+||+ +..+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence 478899999999999999999999999887 778888887776 4799999885 4444
No 104
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.39 E-value=2.2e-07 Score=83.10 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=33.1
Q ss_pred EEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCccccc
Q 014049 26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 26 iIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~t~ 64 (431)
+|||||++||++|+.|.++|.+ |+|||+++.+||.+...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~ 40 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY 40 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence 7999999999999999999999 99999999999998853
No 105
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.39 E-value=3.8e-07 Score=98.35 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=40.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+.+||+|||||.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4589999999999999999999999999999999999999864
No 106
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.38 E-value=2.9e-07 Score=91.69 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=33.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
|..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 45689999999999999999999999999999997
No 107
>PLN02463 lycopene beta cyclase
Probab=98.38 E-value=4.7e-07 Score=90.62 Aligned_cols=48 Identities=29% Similarity=0.627 Sum_probs=41.4
Q ss_pred cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 9 ~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
+..-|.+.+-....|||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 445556666666789999999999999999999999999999999764
No 108
>PRK14694 putative mercuric reductase; Provisional
Probab=98.37 E-value=3.7e-07 Score=92.64 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=39.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
...+|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 345799999999999999999999999999999996 79998764
No 109
>PRK06184 hypothetical protein; Provisional
Probab=98.37 E-value=3.8e-07 Score=93.43 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~ 65 (431)
|+++||+|||||++||++|+.|++.|.+|+|+||++.+ .++...+.
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~ 48 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ 48 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeec
Confidence 45689999999999999999999999999999999876 45555444
No 110
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.37 E-value=4.5e-07 Score=89.77 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
|||||||||++|++||..|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 111
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.37 E-value=8.8e-06 Score=81.71 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=49.6
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI 331 (431)
.+.|.-|. ..+.++|++.+..+|+.|.-+++|++|.+. +++..+|++.-|. |+|.+||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G~-iet~~~V 236 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHGS-IETECVV 236 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCcc-eecceEE
Confidence 45576673 689999999999999999999999999997 6666799987775 9999988
No 112
>PLN02661 Putative thiazole synthesis
Probab=98.37 E-value=3.5e-07 Score=87.22 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=37.0
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCcc
Q 014049 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~ 61 (431)
++||+|||+|++||+||+.|+++ |++|+|+||+..+||..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 58999999999999999999986 99999999999998843
No 113
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.37 E-value=3.7e-07 Score=86.79 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
|||+|||||++||+||..|++.|++|+|+|+++ +||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886654
No 114
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.37 E-value=3.7e-07 Score=93.17 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH 60 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~ 60 (431)
+.+|||||||||++|+.||..+|+.|.+|+++|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45699999999999999999999999999999999 577764
No 115
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.36 E-value=3.8e-07 Score=94.26 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
..|||+|||||.+||+||.+|+++|++|+|+|++ .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 4599999999999999999999999999999995 78997653
No 116
>PRK07236 hypothetical protein; Provisional
Probab=98.36 E-value=4.2e-07 Score=89.90 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
|...||+|||||++||++|..|+++|++|+|+||++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5568999999999999999999999999999999874
No 117
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.36 E-value=4.2e-07 Score=93.96 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--CCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~ 62 (431)
.++||||||+|.+||+||+.++++|.+|+||||.+ .+||++.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 8899664
No 118
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.36 E-value=4.1e-07 Score=90.27 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
...||+|||||++||++|..|+++|++|+|+||++.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 35799999999999999999999999999999998654
No 119
>PRK12831 putative oxidoreductase; Provisional
Probab=98.35 E-value=5.4e-07 Score=91.06 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=40.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
..+..||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 44568999999999999999999999999999999999999875
No 120
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=4.5e-07 Score=92.10 Aligned_cols=44 Identities=27% Similarity=0.444 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc------CCCCCCccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL 64 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~------~~~~GG~~~t~ 64 (431)
.+||+||||+|.+|++||.+|++.|++|+|+|+ +..+||.|...
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~ 52 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV 52 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence 469999999999999999999999999999998 47889988653
No 121
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.35 E-value=4.6e-07 Score=89.89 Aligned_cols=39 Identities=15% Similarity=0.287 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
+||||||||++|++||..|+++|++|+|+|++...+..|
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c 39 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC 39 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence 599999999999999999999999999999987655433
No 122
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.35 E-value=4e-07 Score=90.19 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.+.|||+|||||++||++|+.|+++|++|+|+|++..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 4569999999999999999999999999999999863
No 123
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.35 E-value=4.4e-07 Score=92.93 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
.++||||||+| +||+||+.++++|.+|+||||.+..||.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 46899999999 999999999999999999999999998653
No 124
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.34 E-value=5.2e-07 Score=83.28 Aligned_cols=43 Identities=35% Similarity=0.437 Sum_probs=38.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC--CCCccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHFS 62 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~--~GG~~~ 62 (431)
+.++||||||||++||.||+.||.+|++|+++|+... +||.+.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf 47 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF 47 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence 4579999999999999999999999999999998765 677653
No 125
>PRK13748 putative mercuric reductase; Provisional
Probab=98.34 E-value=4.3e-07 Score=94.37 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+|||||||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 5699999999999999999999999999999997 89998764
No 126
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.33 E-value=5.1e-07 Score=90.90 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CCc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~ 332 (431)
..+.+.|.+.+++.|++|+++++|++|..+ +++++++|++. +|+ .+.||.||+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQD-DQGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEEC-CCCcEEEEEEEeCCCeEEEEecceEEE
Confidence 468899999999999999999999999986 26788887664 343 368899884
No 127
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.33 E-value=5.5e-07 Score=89.01 Aligned_cols=59 Identities=32% Similarity=0.363 Sum_probs=46.5
Q ss_pred EEeecCCc---chHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
++.+..|. ..+.++|++.++++| ..+..+++|..+..+ . +.++|++.+|+ ++||+||+.
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a 207 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA 207 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence 55666664 578899999999999 566669999999764 3 67889887777 999999953
No 128
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.33 E-value=4.4e-07 Score=87.67 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=41.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 65 (431)
..+++|||||++|++||..|++.|++|.++||++.+||+...+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 35899999999999999999999999999999999999988765
No 129
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.33 E-value=4.6e-07 Score=89.47 Aligned_cols=54 Identities=24% Similarity=0.226 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
..+.+.|.+.+.+.| ++|+.+++|++|..+ ++. +.|++++|++++||.|| ++..
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG~ 161 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADGA 161 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCCC
Confidence 357777877777777 999999999999875 444 46778899999999988 4543
No 130
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.33 E-value=4.2e-07 Score=86.47 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCcc
Q 014049 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~ 61 (431)
||+||||+|.+|+++|.+|+++| ++|+|||+..+.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 89999999999999999999998 6999999998876655
No 131
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.32 E-value=5.3e-07 Score=89.20 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
.+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5899999999999999999999999999999998854
No 132
>PLN02985 squalene monooxygenase
Probab=98.31 E-value=7.6e-07 Score=90.93 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 15 ~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.+......+||||||||++||++|..|+++|++|+|+||...
T Consensus 36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 445566679999999999999999999999999999999864
No 133
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.1e-07 Score=84.94 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=38.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 65 (431)
++.|||||||||++||+||.+++|+|.++.+++....+||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 3579999999999999999999999999666666678887766544
No 134
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.31 E-value=7.6e-07 Score=92.50 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=41.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
...++||||||+|.+||+||+.++++|.+|+||||.+..||....
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 445799999999999999999999999999999999999998653
No 135
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.31 E-value=6e-07 Score=89.02 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=41.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
+...+|+|||||.+||++|+.|.+.|++|+|+||.+.+||.|..-
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 345799999999999999999999999999999999999998865
No 136
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.30 E-value=6.7e-07 Score=88.51 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=35.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
||||||||++||++|+.|+++|++|+|+|+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999888764
No 137
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.30 E-value=6.2e-07 Score=90.89 Aligned_cols=40 Identities=28% Similarity=0.520 Sum_probs=36.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
|||||||||.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence 799999999999999999999999999999976 7887653
No 138
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.30 E-value=5.5e-07 Score=89.68 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
.+-++|.+.++..|.+++.+++|.+|..+ ++. +.|++++|++++||.|| ++..
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG~ 166 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADGA 166 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecCC
Confidence 56667777777789999999999999875 343 46778899999999998 5543
No 139
>PRK06185 hypothetical protein; Provisional
Probab=98.30 E-value=6.7e-07 Score=89.11 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=34.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3569999999999999999999999999999999864
No 140
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.30 E-value=7.4e-07 Score=87.42 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
+||+|||||+.|+++|+.|+++|++|+|||++...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 69999999999999999999999999999998753
No 141
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.29 E-value=6.7e-07 Score=88.54 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999984
No 142
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=8.7e-07 Score=92.17 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=41.3
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 15 ~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
+.+|...++||||||+|.+||+||+.++++|.+|+||||+...||.+
T Consensus 5 ~~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 5 KTSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred ccCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 45666678999999999999999999999999999999998777643
No 143
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.28 E-value=1e-06 Score=94.83 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+..+|+|||||.+||+||..|+++|++|+|+|+++.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 35579999999999999999999999999999999999998764
No 144
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.28 E-value=1.1e-06 Score=91.06 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=43.8
Q ss_pred CCCCCCCCCCC---CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049 10 LPVPPYPPIEP---TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (431)
Q Consensus 10 ~~~~~~~~~~~---~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~ 65 (431)
.|.-+..++++ .++||+|||||++||++|+.|++.|++|+|+||++.+ +++...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~ 68 (547)
T PRK08132 8 FPYRPHADQDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA 68 (547)
T ss_pred ccCCCCccccCCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence 34444555543 3589999999999999999999999999999999866 55554443
No 145
>PRK06834 hypothetical protein; Provisional
Probab=98.28 E-value=8.5e-07 Score=90.21 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=38.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC---CCCcccccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSLS 65 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~---~GG~~~t~~ 65 (431)
|+.+||+|||||++||++|+.|+++|.+|+|+|+++. .|.+...+.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~ 49 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH 49 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC
Confidence 4569999999999999999999999999999999875 344554443
No 146
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.28 E-value=8.1e-07 Score=91.80 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
.++||||||+|.+||+||..|+++|.+|+||||++..||.+.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~ 46 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence 468999999999999999999999999999999999999753
No 147
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.27 E-value=7e-07 Score=88.55 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=33.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC---CCcEEEEccCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPNP 55 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~---G~~V~vlE~~~ 55 (431)
|..+||+|||||++||++|+.|+++ |++|+|+|++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 4568999999999999999999998 99999999973
No 148
>PRK06847 hypothetical protein; Provisional
Probab=98.27 E-value=8.8e-07 Score=87.21 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
..+.+.|.+.+...|++|+++++|++|..+ ++. +.|++.+|+++.||.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence 356777777777889999999999999865 444 567778999999999884
No 149
>PLN02697 lycopene epsilon cyclase
Probab=98.27 E-value=1.1e-06 Score=89.37 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=36.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
....|||||||||++||++|..|+++|++|+++|+....+..
T Consensus 105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n 146 (529)
T PLN02697 105 GDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN 146 (529)
T ss_pred ccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc
Confidence 445699999999999999999999999999999997555444
No 150
>PRK14727 putative mercuric reductase; Provisional
Probab=98.27 E-value=7.8e-07 Score=90.44 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=40.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
..||+||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 3699999999999999999999999999999999999998875
No 151
>PRK07190 hypothetical protein; Provisional
Probab=98.26 E-value=9.1e-07 Score=89.89 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~ 65 (431)
...+||+|||||++||++|+.|+++|.+|+|+||++.+ +|++..+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~ 50 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALN 50 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeC
Confidence 34689999999999999999999999999999999875 46654443
No 152
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.25 E-value=8.3e-07 Score=87.61 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
..+.+.|.+.+.. .|++++++++|++|..+ ++. +.|++++|++++||.|| ++..
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG~ 160 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADGA 160 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecCC
Confidence 4677778777777 49999999999999865 343 46777889899999988 5543
No 153
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.25 E-value=1.1e-06 Score=95.52 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...+|+|||+|++||+||..|+++|++|+|+|+++++||..+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 357999999999999999999999999999999999999876
No 154
>PRK06126 hypothetical protein; Provisional
Probab=98.24 E-value=1.2e-06 Score=90.80 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=39.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~ 65 (431)
+++..+||+|||||++||++|+.|++.|++|+|+|+++.. .+++..+.
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~ 52 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTS 52 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCC
Confidence 3455789999999999999999999999999999999753 34444443
No 155
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.24 E-value=9.9e-07 Score=91.58 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||||||+|++||+||+.++++|.+|+||||.+..||.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 46899999999999999999999999999999999999853
No 156
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.24 E-value=1e-06 Score=89.91 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
++.+.+.+.++..|.++++++.|++|... ++. ..|++.+|+++.+|.||.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~ 272 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY 272 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence 56778888888999999999999999764 333 457777899999999885
No 157
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.24 E-value=1.3e-06 Score=90.06 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=37.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
+.++||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 34689999999999999999999999999999999988774
No 158
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.24 E-value=1.1e-06 Score=87.46 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=41.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
+.+||+||||+|.+|..||.++++.|++|.++|+...+||-|-.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~ 46 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV 46 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence 457999999999999999999999999999999999999988764
No 159
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.24 E-value=1e-06 Score=92.06 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEEC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~~ 333 (431)
..+..+|.+.++..|++++.+++|.+|..++.++++++|++ .+|+ +++||.||..
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnA 291 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNA 291 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEEC
Confidence 57888999999999999999999999987511367777765 2444 5799999953
No 160
>PTZ00367 squalene epoxidase; Provisional
Probab=98.24 E-value=1.1e-06 Score=90.34 Aligned_cols=37 Identities=27% Similarity=0.528 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
...++||||||||++|+++|..|+++|++|+|+|++.
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3356999999999999999999999999999999975
No 161
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.24 E-value=1.3e-06 Score=90.33 Aligned_cols=43 Identities=26% Similarity=0.526 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
..++||||||+|.+|++||+.++++|.+|+||||+..+||.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 4479999999999999999999999999999999999998654
No 162
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.23 E-value=1.8e-05 Score=79.71 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p 334 (431)
..+.+-|.+.+++.|++++.++ |..+..++ +|.+++|++++|++++||.|| |+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG 208 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCC
Confidence 4677778888999999998875 88888774 788889999999999999999 653
No 163
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.23 E-value=9.8e-07 Score=86.90 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=32.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.+||+|||||++||++|..|+++|++|+|+|+++
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 3799999999999999999999999999999975
No 164
>PRK12839 hypothetical protein; Provisional
Probab=98.23 E-value=1.4e-06 Score=90.24 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=41.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
...++||||||+|.+||+||+.|+++|.+|+|+||+..+||.+..
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 345799999999999999999999999999999999999998653
No 165
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.23 E-value=1.7e-06 Score=87.23 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
....+||+|||+|.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 34568999999999999999999999999999999999999764
No 166
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.22 E-value=1.5e-06 Score=91.81 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35579999999999999999999999999999999999998653
No 167
>PRK06753 hypothetical protein; Provisional
Probab=98.22 E-value=1.1e-06 Score=86.37 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 89999999999999999999999999999998764
No 168
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.22 E-value=1.1e-06 Score=86.91 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeC-CCcEEEeCEEE-ECCC
Q 014049 278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDPS 335 (431)
Q Consensus 278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI-~~p~ 335 (431)
...|-++|.+.+...+ .+++.+++|+.+..+ ++.+. |+++ +|++++||.|| +|..
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCCC
Confidence 5667777878777776 799999999999987 55554 7778 99999999999 5653
No 169
>PLN02507 glutathione reductase
Probab=98.21 E-value=1.4e-06 Score=88.90 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.++.+.+.+.++..|.++++++.|++|..+ ++. +.|++.+|+++.||.||..
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a 295 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFA 295 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEe
Confidence 466777777788899999999999999865 343 3566778889999999853
No 170
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=1.4e-06 Score=90.60 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
...||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4579999999999999999999999999999999987764
No 171
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.20 E-value=1.6e-06 Score=90.71 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=36.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
..++||||||+|++||+||+.++++|.+|+|+||....||
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 3468999999999999999999999999999999987665
No 172
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=1.3e-06 Score=86.62 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999984
No 173
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.20 E-value=1.9e-06 Score=90.53 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=42.1
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 16 ~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
++......+|+|||+|.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus 304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 333445679999999999999999999999999999999999998753
No 174
>PRK08244 hypothetical protein; Provisional
Probab=98.20 E-value=1.4e-06 Score=89.10 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~ 65 (431)
++||+|||||++||++|+.|+++|.+|+|+||++.+ .|+..++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~ 47 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLH 47 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEec
Confidence 389999999999999999999999999999998764 45555443
No 175
>PRK11445 putative oxidoreductase; Provisional
Probab=98.20 E-value=1.3e-06 Score=85.16 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
+|||+|||||++||++|..|+++ ++|+|+|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 38999999999999999999999 999999999865
No 176
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.19 E-value=1.3e-06 Score=87.78 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~ 56 (431)
|||+|||||++||++|+.|++ +|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999654
No 177
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=1.8e-06 Score=89.72 Aligned_cols=42 Identities=31% Similarity=0.263 Sum_probs=38.3
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
...++||||||+|.+||+||+.++++|.+|+|+||....||.
T Consensus 4 ~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 4 PVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred CccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 345689999999999999999999999999999999887774
No 178
>PRK07538 hypothetical protein; Provisional
Probab=98.19 E-value=1.5e-06 Score=86.79 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
.||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 38999999999999999999999999999998754
No 179
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.18 E-value=1.6e-06 Score=81.70 Aligned_cols=36 Identities=25% Similarity=0.490 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
....+||||||||.+|.+.|+.|+|.|.+|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 345789999999999999999999999999999996
No 180
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.18 E-value=1.4e-06 Score=86.58 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
..+.+.|.+.+...|++++.+++|++|..+ ++. +.|++++|+++.||.||.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA 161 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence 467777878777889999999999999865 444 467778899999999994
No 181
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.18 E-value=1.8e-06 Score=89.36 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||||||+|.+||+||+.++++|.+|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 46899999999999999999999999999999998877744
No 182
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.17 E-value=2e-06 Score=94.69 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=40.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
..+||+|||||++||+||..|+++|++|+|+|+++.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999998764
No 183
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.17 E-value=2e-06 Score=82.15 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-+||||||||+||++|+.|+|+|++|+|||++.-+=|.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 58999999999999999999999999999998766333
No 184
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.16 E-value=2.3e-06 Score=93.86 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=39.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+..||+|||||++||+||..|++.|++|+|+|+.+.+||..+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 4579999999999999999999999999999999999998653
No 185
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=2.1e-06 Score=89.52 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
+...++||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus 8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 3345689999999999999999999999999999998776664
No 186
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.16 E-value=2.1e-06 Score=88.76 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=36.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
+..+||+|||||++||++|..|++.|++|+|+|+++.++.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~ 47 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD 47 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 4568999999999999999999999999999999987653
No 187
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.15 E-value=2.9e-06 Score=86.11 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...+||+|||+|.+||+||..|++.|++|+|+|+.+.+||..+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3457999999999999999999999999999999999999764
No 188
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.15 E-value=2.6e-06 Score=91.43 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
....||+|||||++||+||..|++.|++|+|+|+++.+||..+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3467999999999999999999999999999999999999865
No 189
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.14 E-value=2.1e-06 Score=87.12 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t 63 (431)
+.++||||||||+.|+++|+.|++. |++|+||||++.+|+..+.
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~ 48 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN 48 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence 4568999999999999999999984 8999999999887765443
No 190
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.14 E-value=2.4e-06 Score=89.23 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||+|||+|.+||+||+.++++|.+|+|+||....||.+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t 68 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT 68 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence 46899999999999999999999999999999998877743
No 191
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.14 E-value=1.9e-06 Score=87.39 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=45.8
Q ss_pred cEEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCC--cEEEeCEEEEC
Q 014049 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD 333 (431)
Q Consensus 270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G--~~i~Ad~VI~~ 333 (431)
+.+.|.+|. ..+.++|.+.++..|++|+++++|++|..+. ++. +.|++ .+| .+++||+||+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence 356677773 6899999999999999999999999998751 333 33432 334 36899999854
No 192
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.14 E-value=3.1e-06 Score=88.04 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=41.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.+.++||||||+|.+|++||..++++|++|+||||++.+||.+..
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 344799999999999999999999999999999999999998664
No 193
>PRK07588 hypothetical protein; Provisional
Probab=98.14 E-value=2.1e-06 Score=85.07 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3899999999999999999999999999999864
No 194
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.14 E-value=2.2e-06 Score=85.89 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=43.4
Q ss_pred eecCCc-chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEE-eCCCc--EEEeCEEEE
Q 014049 273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL 332 (431)
Q Consensus 273 ~p~gG~-~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~--~i~Ad~VI~ 332 (431)
++.... .++.++|.+.++. .|++|+++++|.+|..+ +++++||. ..+|+ ++.|+.||+
T Consensus 121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 444433 4688888877765 59999999999999876 77888865 33554 589999985
No 195
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.14 E-value=2.2e-06 Score=86.94 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
.++.+.+.+.++..|.++++++.|++|..+ ++....|++.+|+++.+|.||.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~ 282 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM 282 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence 577888888889999999999999999764 3333466777888999999885
No 196
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.14 E-value=2.7e-06 Score=95.00 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
..+||||||+|.+||+||+..+++|.+|+||||.+..||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 358999999999999999999999999999999999999753
No 197
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.13 E-value=2.5e-06 Score=83.71 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=35.1
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCc
Q 014049 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH 60 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~ 60 (431)
||+|||||++||++|..|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999998 9999999999988874
No 198
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.13 E-value=2.2e-06 Score=87.52 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=35.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
..|+|||||.+||+||..|.+.|.+|+++||++.+||.|+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 46999999999999999999999999999999999999974
No 199
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.12 E-value=3.3e-06 Score=85.05 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=39.7
Q ss_pred CcccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~t 63 (431)
...+|+|||||.+||.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 35789999999999999999987 79999999999999998875
No 200
>PRK05868 hypothetical protein; Validated
Probab=98.12 E-value=2.7e-06 Score=83.61 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999999764
No 201
>PLN02546 glutathione reductase
Probab=98.12 E-value=2.6e-06 Score=87.60 Aligned_cols=44 Identities=27% Similarity=0.160 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC---------CCCCCccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSSL 64 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~---------~~~GG~~~t~ 64 (431)
.+|||||||+|.+|..||..+++.|++|+++|++ ..+||-|-..
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~ 130 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR 130 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence 3699999999999999999999999999999973 5688877654
No 202
>PRK02106 choline dehydrogenase; Validated
Probab=98.12 E-value=2.7e-06 Score=88.25 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=34.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCC
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF 56 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~ 56 (431)
+..+||+||||+|.+|+++|.+|++ +|++|+|||+...
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4457999999999999999999999 8999999999964
No 203
>PRK10262 thioredoxin reductase; Provisional
Probab=98.11 E-value=2.7e-06 Score=81.92 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
..+||+|||||.+||+||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67887654
No 204
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.11 E-value=3.4e-06 Score=85.34 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...++|+|||||++||+||..|++.|++|+|+|+++++||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3457999999999999999999999999999999999999754
No 205
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.11 E-value=4.2e-06 Score=86.96 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=39.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
.++||||||+|.+|++||..++++|++|+||||++..||.+..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 3689999999999999999999999999999999999997753
No 206
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.11 E-value=2.9e-06 Score=88.71 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||||||+|++||.||+.++++|.+|+|+||....||.+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s 89 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 89 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence 35899999999999999999999999999999998877743
No 207
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.10 E-value=3.3e-06 Score=86.71 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...|||+|||||++||+||.+|++.|++|+|+|.+ +||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 34699999999999999999999999999999864 999875
No 208
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=3.1e-06 Score=88.69 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
.++||||||+|.+||+||+.++++|.+|+|+||+..+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 3589999999999999999999999999999999888754
No 209
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.09 E-value=4.6e-06 Score=84.45 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=39.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+..+|+|||+|.+||+||..|++.|++|+++|+++.+||..+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 5579999999999999999999999999999999999997753
No 210
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.08 E-value=3.4e-06 Score=88.63 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~ 332 (431)
.+.|..+|.+.+...|++|+.++.|.++..+ +|+++||... +|+ .+.|+.||+
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL 214 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI 214 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 4477788888888899999999999999987 7888887653 565 357999885
No 211
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.08 E-value=3.6e-06 Score=87.56 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=37.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCC---CcEEEEccCCCCCCcc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF 61 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~GG~~ 61 (431)
..++||+|||+|.+||+||+.++++| .+|+|+||....||.+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 34689999999999999999999998 8999999999887743
No 212
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.07 E-value=3.5e-06 Score=83.73 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
-+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999998754
No 213
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.07 E-value=3.3e-06 Score=87.79 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (431)
..|.++|.+.++..|.+++.++.|.++..+ +|+++||.. .+|+ .+.|+.||+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl 191 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF 191 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence 478888888888889999999999999876 788887753 3554 578999885
No 214
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.06 E-value=4.2e-06 Score=81.98 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
.||+|||||++||.||+.|++.|++|+|+|+++...-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 5999999999999999999999999999998876643
No 215
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.06 E-value=3.7e-06 Score=86.68 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
..++||||||+|++||+||+.++ +|.+|+|+||.+..||.+
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 34689999999999999999986 599999999999888853
No 216
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.06 E-value=4.9e-06 Score=87.60 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...+|+|||+|++||+||..|++.|++|+|+|+++++||..+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 357999999999999999999999999999999999999875
No 217
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.06 E-value=4.1e-06 Score=87.44 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~t 63 (431)
+|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 699999999999999999999999999999984 579997664
No 218
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.05 E-value=4.2e-06 Score=86.98 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
||||||+|++||+||+.++++|.+|+|+||....||.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999999877754
No 219
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.05 E-value=4.3e-06 Score=82.25 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.8
Q ss_pred cEEEECCChhHHHHHHHH--hhCCCcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~L--a~~G~~V~vlE~~~~~ 57 (431)
||||||||++||++|.+| ++.|.+|+++|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999999887
No 220
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.05 E-value=4.5e-06 Score=84.99 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=37.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
|||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999999755
No 221
>PLN02815 L-aspartate oxidase
Probab=98.04 E-value=4.3e-06 Score=86.70 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
++||||||+|++||+||+.++++| +|+||||....||.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 589999999999999999999999 99999999998884
No 222
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.04 E-value=5e-06 Score=85.31 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...|||+|||||.+||+||.+|++.|++|+|+|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4469999999999999999999999999999985 6999775
No 223
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.03 E-value=5.4e-06 Score=86.88 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=38.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCC--CCcccccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSLS 65 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~--GG~~~t~~ 65 (431)
++++||+|||||++||++|+.|++ +|.+|+|+|+++.. .|++-.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~ 78 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIA 78 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEC
Confidence 457999999999999999999999 59999999998653 45554433
No 224
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.02 E-value=5.6e-06 Score=86.03 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
....+|+|||||++||++|..|+++|++|+|+||+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 345899999999999999999999999999999985
No 225
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.02 E-value=5e-06 Score=81.87 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=34.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
||+|||||++|+.||..|++.|++|+|+|+++..|-.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p 38 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTP 38 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCc
Confidence 8999999999999999999999999999998887653
No 226
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.02 E-value=5.3e-06 Score=82.87 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=32.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYG 58 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~G 58 (431)
+|+|||||++||++|..|+++| .+|+|+||++.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999998 5999999987764
No 227
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.01 E-value=5.2e-06 Score=83.83 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=37.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~ 62 (431)
+.+||||||||+.|+++|+.|++. |++|+||||.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 468999999999999999999999 999999999778876544
No 228
>PRK06996 hypothetical protein; Provisional
Probab=98.01 E-value=6e-06 Score=82.04 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=35.6
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCC----CcEEEEccCCCC
Q 014049 17 PIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPFY 57 (431)
Q Consensus 17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G----~~V~vlE~~~~~ 57 (431)
++....+||+|||||++|+++|+.|+++| ++|+|+|+.+..
T Consensus 6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~ 50 (398)
T PRK06996 6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPA 50 (398)
T ss_pred hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCC
Confidence 45556799999999999999999999997 479999998753
No 229
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.01 E-value=6e-06 Score=84.17 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeCC-C--cEEEeCEEEE
Q 014049 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G--~~i~Ad~VI~ 332 (431)
..+.++|.+.+++ .|.+|+.++.|.+|..+ +++++||.+.+ + ..++|+.||+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl 183 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL 183 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence 4788889888877 68999999999999876 67888887644 3 3689999885
No 230
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.00 E-value=6.2e-06 Score=84.41 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=36.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||||||+|.+||+||..+++ |.+|+|+||.+..||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 36899999999999999999976 99999999999888753
No 231
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.98 E-value=8.1e-06 Score=85.24 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG 59 (431)
.++||||||+|.+||+||+.++++ |.+|+|+||++..|+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 368999999999999999999998 999999999987544
No 232
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.97 E-value=1.1e-05 Score=82.20 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=39.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
...+|+|||+|++||+||..|++.|++|+|+|+.+++||....
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence 3469999999999999999999999999999999999997653
No 233
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.95 E-value=8.3e-06 Score=82.90 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--------CCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~t 63 (431)
+||+||||+|.+|+.||..+++.|++|+++|+.. .+||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 4899999999999999999999999999999742 58887654
No 234
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.94 E-value=7.4e-06 Score=79.46 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEE-ccCCCCCCcccc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHL-DPNPFYGSHFSS 63 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vl-E~~~~~GG~~~t 63 (431)
||||||||++|+.||+.+|+.|.+|+++ ++.+.+|....+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn 41 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN 41 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch
Confidence 8999999999999999999999999999 777777765444
No 235
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=8.4e-06 Score=84.22 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (431)
.++.+.|.+.+++.|++|++++.|.++..+ ++++++||.. .+|+ ++.|+.||.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~-~~~~v~Gv~~~~~~~g~~~~i~AkaVIl 191 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVD-ENREVIGAIFLDLRNGEIFPIYAKATIL 191 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEe-CCcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence 468888888888899999999999999887 2344888753 4564 578999985
No 236
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.94 E-value=1e-05 Score=82.89 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=41.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
++..++||||||+|.+||.||..++.+|.+|+++||....||.+..
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 4556799999999999999999999999999999999999865543
No 237
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.93 E-value=8.8e-06 Score=84.58 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=36.0
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcc
Q 014049 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~ 61 (431)
++||+|||+|++||+||+.++++ |.+|+|+||....||.+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 58999999999999999999987 47999999998887744
No 238
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.93 E-value=9.7e-06 Score=82.13 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
..+.+.|.+.++..|++++.+ .|..+..+ +++++||.+ +|+.++|+.||+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL 169 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI 169 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence 478899999998999999875 78888765 788888886 677899999885
No 239
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=1e-05 Score=84.19 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCC---CcEEEEEe---CCCc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~---g~~~gV~~---~~G~--~i~Ad~VI~ 332 (431)
..|.+.|.+.+...|.+|+.++.|.++..+ ++ |+++||.. .+|+ .+.|+.||+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 200 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLT-ETPSGPVAAGVVAYELATGEIHVFHAKAVVF 200 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence 468888988888899999999999999876 22 78888864 3555 478999885
No 240
>PRK08275 putative oxidoreductase; Provisional
Probab=97.92 E-value=9.9e-06 Score=83.88 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (431)
..+.+.|.+.++..|.+|+.++.|.+|..+ ++++++||.. .+|+ .+.|+.||+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTD-ADGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEc-CCCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 468888988888899999999999999875 2577888863 3565 478999884
No 241
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.91 E-value=1.1e-05 Score=79.84 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc--EEEeCEEEEC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVLD 333 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~Ad~VI~~ 333 (431)
++.++|.+.++..|++|++++.|.++..+ +++++.|...+|+ .++||.||+.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVLA 313 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVLA 313 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEEe
Confidence 79999999999999999999999999876 6666666655564 4899998853
No 242
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.91 E-value=1.2e-05 Score=84.74 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=47.0
Q ss_pred cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 9 ~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
-|=+|--|+ ..+-..|.|||+|.+||+||..|-|+|+.|+|+||.+|+||....
T Consensus 1773 gwm~p~pp~-~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1773 GWMKPCPPA-FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred cCCccCCcc-cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 466665554 556689999999999999999999999999999999999998764
No 243
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.90 E-value=1.1e-05 Score=83.81 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=36.4
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcc
Q 014049 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~ 61 (431)
++||+|||+|++||+||..++++ |.+|+|+||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 48999999999999999999987 58999999999888854
No 244
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.89 E-value=1.5e-05 Score=79.60 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=40.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+...|.|||+|.+||+||..|+++|++|+|+|+.+..||+...
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 4479999999999999999999999999999999999999885
No 245
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.88 E-value=1.2e-05 Score=74.50 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcE--EEeCEEE-ECCCCCCCCC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFTVPGS 341 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~--i~Ad~VI-~~p~~~~~~l 341 (431)
.+-++|.+..+..||.++.+.+|.+.... +|+++.|-+.++.. ++||.+| ++.++.-..|
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL 321 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL 321 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence 67788999999999999999999999988 89999998888765 5788766 4565543333
No 246
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.88 E-value=1.3e-05 Score=82.61 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=36.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.++||||||+|++||+||+.+++. .+|+|+||....||.+
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t 46 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST 46 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence 458999999999999999999987 8999999999888843
No 247
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.86 E-value=1.2e-05 Score=76.47 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=38.2
Q ss_pred CcccEEEECCChhHHHHHHHHhh----C--CCcEEEEccCCCCCCccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~----~--G~~V~vlE~~~~~GG~~~t~ 64 (431)
+.+||+|||||.+||+||++|.+ + -.+|.|+||...+||.+-|-
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSG 124 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSG 124 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecc
Confidence 46999999999999999998843 3 35899999999999988764
No 248
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.86 E-value=2.1e-05 Score=83.90 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=37.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.+..+|+|||+|++||+||.+|++.|++|+|+|+.+..|+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~ 422 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPF 422 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccccc
Confidence 356799999999999999999999999999999998877653
No 249
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.84 E-value=2.3e-05 Score=81.42 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 346899999999999999999999999999999999999765
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.83 E-value=1.9e-05 Score=80.00 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=35.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t 63 (431)
+|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence 79999999999999999999999999999974 7776654
No 251
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.82 E-value=2.5e-05 Score=77.85 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=38.0
Q ss_pred cccEEEECCChhHHHHHHHH-hhCCCcEEEEccCCCCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~L-a~~G~~V~vlE~~~~~GG~~~t 63 (431)
...|+|||||.+||.||..| ++.|++|+|+|+.+.+||..+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 45799999999999999965 5679999999999999999885
No 252
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.82 E-value=2.1e-05 Score=70.08 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
||||||||.+|++||..|++.|++|+++|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999977654
No 253
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.81 E-value=2e-05 Score=81.13 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
..+||+||||+|.+|.++|.+|+.+|++|+|||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 45799999999999999999999999999999996
No 254
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.79 E-value=3e-05 Score=75.73 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
..+|+|||+|.+||.+|..|++.|++|+++|+.+++||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 35899999999999999999999999999999999999764
No 255
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.77 E-value=0.0013 Score=64.56 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=46.2
Q ss_pred EeecCCc----chHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEEEEEeC-----CCcEEEeCEEEECC
Q 014049 272 IYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLDP 334 (431)
Q Consensus 272 ~~p~gG~----~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----~G~~i~Ad~VI~~p 334 (431)
.+...|+ |+|.+.|.+.+... |.+++++++|+.|.... +|+ +.|++. +.++++|+.|++++
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvGA 240 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVGA 240 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEECC
Confidence 4556664 79999999988877 99999999999999873 453 555542 23578999998753
No 256
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.77 E-value=4.3e-05 Score=57.26 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=33.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
.|+|||||+.|+-+|..|++.|.+|+++|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 38999999999999999999999999999999998
No 257
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.73 E-value=2.6e-05 Score=73.63 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=41.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
.+|||+|||+|.+|-.||...++.|.+...+|++..+||-|-..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv 81 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV 81 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence 46999999999999999999999999999999999999987653
No 258
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.72 E-value=3.4e-05 Score=80.24 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHh----hCCCcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La----~~G~~V~vlE~~~~~ 57 (431)
||||||+|++||+||+.++ ++|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999998863
No 259
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.72 E-value=3.6e-05 Score=78.09 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.++.+.+.+..+..|.++++++.|++|..+ ++. +.|.+.+|+++.+|.||+.
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a 269 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMA 269 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEe
Confidence 456777778888899999999999999765 344 3466778999999998853
No 260
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.71 E-value=3.9e-05 Score=78.52 Aligned_cols=38 Identities=34% Similarity=0.330 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
|||||||+|++|+.||..+++.|.+|+++|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 79999999999999999999999999999998554443
No 261
>PRK13984 putative oxidoreductase; Provisional
Probab=97.71 E-value=4.3e-05 Score=80.15 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
...+|+|||+|.+|++||..|++.|++|+|+|+++.+||..+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 457999999999999999999999999999999999999765
No 262
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.70 E-value=3.1e-05 Score=80.73 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.4
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
|||||+|.+||+||+.++++|.+|+|+||.+.+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 699999999999999999999999999999977654
No 263
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.69 E-value=3.5e-05 Score=71.67 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCC---------CCcccccChh
Q 014049 21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFY---------GSHFSSLSIA 67 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~---------GG~~~t~~~~ 67 (431)
.++||+|||+|..|++.|..|.+ .|.+|+|+|+++.| ||-|..|++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp 144 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP 144 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence 47899999999999999998854 47999999999975 6666666654
No 264
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.69 E-value=3.7e-05 Score=78.82 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEEEEEeCC-Cc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~Ad~VI~ 332 (431)
..+.++|.+.++.. |++|+.++.|.++..+ +|+++||.+.+ ++ ++.|+.||+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 47889998888765 8999999999999876 78888987643 33 589999885
No 265
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.68 E-value=3.8e-05 Score=77.54 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=34.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
+||+||||+|.+|..||+. ++|++|+++|+ +.+||.|-.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~ 41 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV 41 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence 5999999999999998754 47999999998 5789987654
No 266
>PRK07846 mycothione reductase; Reviewed
Probab=97.68 E-value=4e-05 Score=77.37 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=33.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
+||+||||+|.+|.+||.+ ++|++|+++|++ .+||-|-.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCc
Confidence 4899999999999988876 469999999984 688877654
No 267
>PLN02785 Protein HOTHEAD
Probab=97.68 E-value=4.7e-05 Score=78.91 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=32.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
...||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 346999999999999999999999 699999999864
No 268
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.67 E-value=3.9e-05 Score=82.42 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~ 57 (431)
+|+|||||++||+||..|+++ |++|+|+|+++..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 799999999999999999998 8999999999873
No 269
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.67 E-value=3.6e-05 Score=79.47 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~ 56 (431)
|+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999999 69999999864
No 270
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.66 E-value=5.8e-05 Score=82.48 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=34.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.++||||||+|.+||.||+.++++|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 368999999999999999999999999999999886
No 271
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.57 E-value=0.00097 Score=63.05 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=38.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCcccc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~~t 63 (431)
+.++..+-|||+|++||++|..|-| .|.++.+||--+..||..-.
T Consensus 19 ~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 19 NVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 4556789999999999999999966 46799999999999997654
No 272
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.00016 Score=71.63 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=31.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
+..|||||||||++|+-||.+.||.|.+++++=-+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 34699999999999999999999999999988665
No 273
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.34 E-value=0.00015 Score=66.87 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=39.0
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049 17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 17 ~~~~~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t 63 (431)
+.....||.||||+|+.||+.|..|.-+ +.+|.|||+....+=..+.
T Consensus 43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg 91 (453)
T KOG2665|consen 43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG 91 (453)
T ss_pred ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence 3445579999999999999999999887 9999999999876644433
No 274
>PRK09897 hypothetical protein; Provisional
Probab=97.27 E-value=0.0003 Score=71.91 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCC-Cc
Q 014049 23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~G-G~ 60 (431)
++|+|||+|.+|+++|..|.+.+ .+|+|+|++..+| |.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 58999999999999999998865 4899999999999 65
No 275
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.22 E-value=0.00038 Score=64.44 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=36.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
-|||||+|++||+|+-.+-..|-.|++||++...||+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999989999999999999754
No 276
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.17 E-value=0.00048 Score=68.39 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.+.+.+.+.+++.|.++++++.|++|.. ++. +.|++.+|+++.||.||+.
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a 236 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYG 236 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEEC
Confidence 4556677778889999999999999853 232 4577889999999999964
No 277
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.15 E-value=0.00056 Score=69.46 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=35.2
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCC
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY 57 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~ 57 (431)
....||.||||||-+|++.|++|++. -++|++||+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34579999999999999999999997 6899999998776
No 278
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.11 E-value=0.00048 Score=67.69 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
||+|||+|++||++|..|++. ++|+||=|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999999 999999998776
No 279
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.03 E-value=0.00061 Score=68.71 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.++.+.+.+.++..|.+++++++|.+|.. +++...|.+ +++++.||.||..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a 241 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA 241 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence 46778888888899999999999999953 445556665 5567999998864
No 280
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.93 E-value=0.0013 Score=61.74 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=41.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 64 (431)
...||..|||+|-+|+++|++.+.-|.+|.++|..-.+||-|-..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~ 62 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV 62 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence 347999999999999999999999999999999999999987653
No 281
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.93 E-value=0.00095 Score=67.19 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.++.+.+.+.+++.|.++++++.|++|. .. .|++++|+++.+|.||..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a 236 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG 236 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence 3677778888889999999999999984 22 356678889999998853
No 282
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.93 E-value=0.00095 Score=66.89 Aligned_cols=47 Identities=23% Similarity=0.150 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.+.+.+.+.+++.|.+++++++|++|. .+ .|++++|+++.||.||..
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~ 275 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWS 275 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEc
Confidence 567777888899999999999999984 22 366789999999998854
No 283
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.92 E-value=0.0009 Score=66.45 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
.+++|||+|..||.+|..|+++|++|+++|+.+++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5999999999999999999999999999999999999986
No 284
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00089 Score=62.48 Aligned_cols=34 Identities=35% Similarity=0.411 Sum_probs=31.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~ 53 (431)
..+||.||||+|-+||+||...+.-|.+|.+||-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 3469999999999999999999999999999996
No 285
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.79 E-value=0.00043 Score=60.30 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCccc
Q 014049 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~ 62 (431)
-||||||+|-+||+||+..+++ ..+|.++|+.-.+||-++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 5999999999999999999865 589999999999988654
No 286
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0015 Score=63.72 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
..+|||||||||++|+-||++.||-|-+.++|-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45799999999999999999999999998887654
No 287
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0013 Score=61.15 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
--|.|||||++|+-||+.++++|..|.++|.++.=+--+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 458999999999999999999999999999997766433
No 288
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.74 E-value=0.0045 Score=60.34 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=50.4
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCC
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~ 336 (431)
.-.+.+.|.+.++.+|++|++++.|+.|+.+ ++.+.+|++++|+++.||+||++|-.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence 4577788999999999999999999999997 77778999999999999999987653
No 289
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.72 E-value=0.0057 Score=59.02 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=50.5
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
++.|.+|. ..+.++|.+.+.+.|++++.+++|+.|..+ ++++++|.+.+| +++||+||+.
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a 188 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA 188 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence 55677773 789999999999999999999999999876 677788887666 7999998853
No 290
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.47 E-value=0.003 Score=53.88 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=28.4
Q ss_pred EEECCChhHHHHHHHHhhC-----CCcEEEEccCCCCC
Q 014049 26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYG 58 (431)
Q Consensus 26 iIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~G 58 (431)
+|||+|++|++++..|.+. ..+|+|+|+++. |
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G 37 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-G 37 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-c
Confidence 5999999999999999888 578999999666 5
No 291
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.46 E-value=0.0017 Score=59.33 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=38.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~ 62 (431)
....|+|||+|+.|..+|++|++.+ ..++++|+....||...
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 3468999999999999999999999 89999999999998654
No 292
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.40 E-value=0.0035 Score=55.03 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.|.|||.|..||.+|+.||++|++|+.+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999999874
No 293
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.35 E-value=0.0042 Score=59.71 Aligned_cols=39 Identities=31% Similarity=0.564 Sum_probs=33.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhC----CCcEEEEccC--CCCCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGS 59 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~--~~~GG 59 (431)
..|||||+|||+.|++.|+.|..+ -+||++||.. +..|+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~ 79 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD 79 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence 479999999999999999999864 5799999999 44444
No 294
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.21 E-value=0.0059 Score=59.81 Aligned_cols=46 Identities=26% Similarity=0.357 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-EEEeCEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV 331 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI 331 (431)
.++++...+..+++|.+|+++++|++|.. + +|++++|+ +|.|+.||
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv 255 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV 255 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence 46667777888999999999999999953 2 46677888 49999999
No 295
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.21 E-value=0.005 Score=60.31 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~ 335 (431)
.+.+.+.+.+++.|.++++++.|++|. .+ .|++.+|+++.+|.||..+.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG 240 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence 466777788889999999999999883 23 46678899999999996443
No 296
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0064 Score=57.87 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=38.1
Q ss_pred cccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCcccc
Q 014049 22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~t 63 (431)
...|.|||+|.+|+.+|..|-+ .+..|.++|+.+.++|..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 4589999999999999998877 47999999999999999886
No 297
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.05 E-value=0.0074 Score=51.52 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.|.|||||-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999987
No 298
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.99 E-value=0.0078 Score=59.73 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 469999999999999999999999999999999987654
No 299
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.84 E-value=0.026 Score=55.67 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=48.3
Q ss_pred EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
+++|.+|. ..+.++|.+.+.+ |++++.+++|.+|..+ +++ ++|++.+|++++||+||.
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~ 184 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL 184 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence 56777774 6888999988888 9999999999999875 454 678888888899999884
No 300
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.83 E-value=0.011 Score=51.59 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=28.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.|.|||+|..|...|..++++|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 378999999999999999999999999999654
No 301
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.012 Score=58.12 Aligned_cols=40 Identities=25% Similarity=0.521 Sum_probs=34.5
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCccc
Q 014049 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~ 62 (431)
+++|+|||+|++|+..|..|.+. ++ +.|+|++...|+-..
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia 44 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA 44 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence 37899999999999999999775 33 999999999997554
No 302
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0059 Score=57.37 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
..|||+|||+|.+|-+||.+.||+|.+.=++ .+|.||...
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl 249 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL 249 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence 4699999999999999999999999987654 357888654
No 303
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.74 E-value=0.0053 Score=60.95 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~ 62 (431)
+|||+|||||-.|.-+|.-.+-+|.+|.++|++|.--|-.+
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 59999999999999999999999999999999998766443
No 304
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.015 Score=59.30 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4799999999999999999999999999998864
No 305
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.71 E-value=0.0075 Score=58.41 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=28.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~ 56 (431)
.||+|+||.|+.+|+.|+.|...+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 589999999999999999999987 99999999875
No 306
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.67 E-value=0.015 Score=57.39 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.+.+.+.+.++..|.+++++++|++|..+ ++. +.|++.+|+++.||.||+.
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a 234 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAA 234 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEEC
Confidence 46667777788899999999999999764 333 4677889999999999954
No 307
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.50 E-value=0.015 Score=58.91 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=32.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
.|.|||.|.+|++||..|+++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999998875
No 308
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.49 E-value=0.018 Score=56.80 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence 47999999999999999999999999999999887643
No 309
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.42 E-value=0.1 Score=50.91 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=68.2
Q ss_pred cCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHH
Q 014049 206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285 (431)
Q Consensus 206 ~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al 285 (431)
...|..+||++.++++.+.+-+..+....+|.++. . +..+.-.+...+..+ | .+-++||...|++.|
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~------i~a~~G~vSla~a~~---g-l~sV~GGN~qI~~~l 134 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---N------IHAFAGLVSLAGATG---G-LWSVEGGNWQIFEGL 134 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---c------hhhhhhheeeeeccC---C-ceEecCCHHHHHHHH
Confidence 45688999999999987776555444445566531 1 223333333332212 2 568999999999987
Q ss_pred HHHHHhcCcEEEeCcceeEEEEecCCCc-EEEEEeCC--CcE-EEeCEEEECC
Q 014049 286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQD-ILSHKLVLDP 334 (431)
Q Consensus 286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~--G~~-i~Ad~VI~~p 334 (431)
.+ .-|+++ ++++|++|.....++. ...|...+ +.. -..|.||++.
T Consensus 135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAt 183 (368)
T PF07156_consen 135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIAT 183 (368)
T ss_pred HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECC
Confidence 65 568899 9999999933212332 22343332 222 2459998653
No 310
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.38 E-value=0.021 Score=57.45 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
..|+|||+|..|+-+|..|++.|.+|+++|+.+++.++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 47999999999999999999999999999999988654
No 311
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.37 E-value=0.023 Score=54.46 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
++...|.|||+|--|...|.+|+++|++|+++.++.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 344579999999999999999999999999998864
No 312
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.34 E-value=0.017 Score=55.19 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
+|.|||+|+-|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 313
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.29 E-value=0.02 Score=58.19 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
-.++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 4799999999999999999999999999999988644
No 314
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.18 E-value=0.025 Score=57.39 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
.+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 5899999999999999999999999999999998764
No 315
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.16 E-value=0.028 Score=47.39 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=29.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
|.|+|+|-.|+..|++|+++|++|.++-++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998864
No 316
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.13 E-value=0.028 Score=56.78 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=32.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+...|+|||+|..|+.+|..|++.|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45689999999999999999999999999999975
No 317
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.10 E-value=0.027 Score=61.18 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p 334 (431)
+..+.+.+.++..|.++++++.|++|..+. .+....|++++|+++.||.||..+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence 445667778889999999999999997531 244567888899999999999643
No 318
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=95.01 E-value=0.028 Score=56.98 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence 47999999999999999999999999999999887643
No 319
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.99 E-value=0.15 Score=49.96 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=49.5
Q ss_pred EEeecC-CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC-cEEEeCEEEE-CCCCCCCC
Q 014049 271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL-DPSFTVPG 340 (431)
Q Consensus 271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~Ad~VI~-~p~~~~~~ 340 (431)
.+||.- -+.++.++|.+.+++.|++|+++++|+.| + +++ ..|++.++ ++++||+||+ .....+|.
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVLALGGASWSQ 144 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEEcCCCccccc
Confidence 578855 48899999999999999999999999999 3 333 56776543 5799999985 33333344
No 320
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.96 E-value=0.027 Score=56.13 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||.|..|+..|..|+++|++|+++|.+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999999999999999999999999998665
No 321
>PRK06370 mercuric reductase; Validated
Probab=94.93 E-value=0.034 Score=56.46 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999999988764
No 322
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.90 E-value=0.033 Score=56.32 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999998763
No 323
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.035 Score=49.11 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEcc---CCC-CCCccccc
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSSL 64 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~---~~~-~GG~~~t~ 64 (431)
.-.|+|||+|.++-+||++++++-.+-+++|- |+. +||...|-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 44899999999999999999999999999994 444 47766553
No 324
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.86 E-value=0.071 Score=47.21 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~ 333 (431)
.++.+-|.+.++.+|..+++++.|++|..+ +++ +.|++.++++++||+||++
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA 133 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA 133 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence 456677778888889899999999999987 444 7899999989999999953
No 325
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.035 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 326
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.82 E-value=0.035 Score=56.44 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987653
No 327
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.79 E-value=0.036 Score=56.25 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=34.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
.+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 47999999999999999999999999999999987543
No 328
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.75 E-value=0.038 Score=56.02 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999988754
No 329
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.74 E-value=0.032 Score=52.76 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 589999999999999999999999999999864
No 330
>PRK07846 mycothione reductase; Reviewed
Probab=94.71 E-value=0.039 Score=55.79 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
.+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~ 203 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR 203 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence 5799999999999999999999999999999988753
No 331
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.71 E-value=0.031 Score=60.46 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECC
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p 334 (431)
.+.+.+.+.++.+|.++++++.|++|.- +++..+|++++|+++.||.||..+
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~ 234 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAA 234 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECC
Confidence 3455666777889999999999999964 345678888999999999999643
No 332
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.70 E-value=0.04 Score=52.04 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
.|.|||+|..|..-|..|+++|++|+++|.++..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6899999999999999999999999999988664
No 333
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.70 E-value=0.04 Score=55.97 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC
Confidence 47999999999999999999999999999999987543
No 334
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.69 E-value=0.038 Score=55.67 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~ 186 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL 186 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh
Confidence 37999999999999999999999999999999987643
No 335
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.69 E-value=0.045 Score=51.87 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|.-|...|..|+++|++|+++|++..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998743
No 336
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.68 E-value=0.039 Score=56.04 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~ 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 47999999999999999999999999999998876543
No 337
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.66 E-value=0.043 Score=55.60 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=35.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
.+++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 207 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL 207 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc
Confidence 47999999999999999999999999999999988753
No 338
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.56 E-value=0.049 Score=55.22 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=35.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
..++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 47999999999999999999999999999999987653
No 339
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.51 E-value=0.045 Score=54.86 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
..|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999998874
No 340
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.47 E-value=0.041 Score=53.06 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=30.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
++.|||+|..||+.|+.||+.|++|+.+|....
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 689999999999999999999999999998753
No 341
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.42 E-value=0.047 Score=49.54 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
+++|||+|--|...|..|++.|+.|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 689999999999999999999999999999864
No 342
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.30 E-value=0.051 Score=51.19 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 3699999999999999999999999999997754
No 343
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=94.30 E-value=0.059 Score=54.85 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence 48999999999999999999999999999999987543
No 344
>PRK04148 hypothetical protein; Provisional
Probab=94.25 E-value=0.042 Score=45.09 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 888889999999999999999987
No 345
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.23 E-value=0.051 Score=58.82 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
..|+|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 3699999999999999999999999999999887643
No 346
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=94.22 E-value=0.061 Score=54.39 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
..++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988754
No 347
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.15 E-value=0.056 Score=51.73 Aligned_cols=34 Identities=35% Similarity=0.380 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|..|..-|..++++|++|+++|.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998763
No 348
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.12 E-value=0.15 Score=52.43 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=47.4
Q ss_pred EEeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~ 332 (431)
+++| .| ...++.++.+.+.++|++|+.+++|++|..+ ++++++|++. +|+ +++|+.||.
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn 184 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN 184 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence 5666 45 2578889999999999999999999999987 7777788763 343 689999984
No 349
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.97 E-value=0.062 Score=55.30 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
.+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 489999999999999999999999999999988774
No 350
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.93 E-value=0.18 Score=51.39 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS 63 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t 63 (431)
+||||||||+.|+++|+.|++. |.+|+||||.+.+|...+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~ 43 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN 43 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence 6999999999999999999997 9999999999887744333
No 351
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.92 E-value=0.045 Score=50.92 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC--------CCCCCcccccC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS 65 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~--------~~~GG~~~t~~ 65 (431)
-+|+|||+|..|.-||....--|-+|+++|.| +.+|||..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 58999999999999999999999999999999 67889877754
No 352
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.88 E-value=0.07 Score=50.51 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3589999999999999999999999999998764
No 353
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.85 E-value=0.084 Score=53.61 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 379999999999999999999999999999999877653
No 354
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.81 E-value=0.08 Score=53.35 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
..|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4699999999999999999999999999999887654
No 355
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=93.81 E-value=0.17 Score=51.63 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=45.7
Q ss_pred cEEeecCC---cchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEEC
Q 014049 270 ALIYPIYG---QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (431)
Q Consensus 270 ~~~~p~gG---~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~~ 333 (431)
+.+.|.+| .+.+.++|.+.++..| ++|+++++|++|..+. +++ +.|++ .+|+ +++|++||+.
T Consensus 171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence 46677776 3689999999998887 5999999999998752 443 33443 3464 6999998853
No 356
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.77 E-value=0.074 Score=50.58 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.|.|||+|-.|...|..|+++|++|++++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 48999999999999999999999999999853
No 357
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.70 E-value=0.082 Score=53.37 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 203 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR 203 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence 3699999999999999999999999999999888643
No 358
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=93.68 E-value=0.08 Score=55.83 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~ 350 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL 350 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence 37999999999999999999999999999999998753
No 359
>PTZ00058 glutathione reductase; Provisional
Probab=93.68 E-value=0.078 Score=54.95 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 4799999999999999999999999999999998764
No 360
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.67 E-value=0.089 Score=52.82 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-.++|||+|..|+-.|..+++-|-+|+|+|+.+++--.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~ 211 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG 211 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence 35999999999999999999999999999999998763
No 361
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.60 E-value=0.072 Score=53.13 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998765
No 362
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.59 E-value=0.079 Score=57.63 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
.++|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 689999999999999999999999999999987644
No 363
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.55 E-value=0.084 Score=53.33 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999999875
No 364
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=93.52 E-value=0.24 Score=51.80 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEe-CEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-d~VI~ 332 (431)
..|.++|.+.++..|++|+++++|++|..+ +++++||++. +++ +++| +.||+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl 272 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL 272 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence 468899999999999999999999999887 7888888653 233 4789 88885
No 365
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.49 E-value=0.096 Score=49.71 Aligned_cols=34 Identities=35% Similarity=0.420 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|.-|...|..|+++|++|.++|++..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3599999999999999999999999999998763
No 366
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.47 E-value=0.13 Score=44.35 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.5
Q ss_pred CcccEEEECCCh-hHHHHHHHHhhCCCcEEEEccC
Q 014049 21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 21 ~~~DviIIGaGl-~GL~aA~~La~~G~~V~vlE~~ 54 (431)
....|+|||+|- .|..+|.+|.+.|.+|.++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 357899999995 7999999999999999999986
No 367
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.43 E-value=0.085 Score=51.14 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+|.|||+|.-|...|..|+++|++|++++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 69999999999999999999999999999853
No 368
>PRK10262 thioredoxin reductase; Provisional
Probab=93.39 E-value=0.1 Score=50.15 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
..|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998875
No 369
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.39 E-value=0.089 Score=54.17 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
.+|+|||||.+|+-+|..|+..|.+|+++++.+.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 48999999999999999999999999999998876
No 370
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.38 E-value=0.1 Score=49.73 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.+|.|||+|--|...|++|+++|.+|+++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999963
No 371
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.37 E-value=0.1 Score=49.83 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC-CCC
Q 014049 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF-YGS 59 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~-~GG 59 (431)
+|.|||+|..|+++|..|+++| ..|.++|++.. ..|
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g 40 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEG 40 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhh
Confidence 5899999999999999999999 58999998753 444
No 372
>PLN02507 glutathione reductase
Probab=93.36 E-value=0.098 Score=53.58 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
.+|+|||+|..|+-.|..|++.|.+|+++|+.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 479999999999999999999999999999998764
No 373
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.35 E-value=0.11 Score=49.76 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|.|||+|..|...|..|+++|++|+++|++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999765
No 374
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.34 E-value=0.097 Score=49.81 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDP 53 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~ 53 (431)
.|.|||+|-.|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 375
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.28 E-value=0.12 Score=44.58 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|+|+|+|-.|+.||..|.+-|.+|+++|.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 579999999999999999999999999999864
No 376
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.22 E-value=0.097 Score=54.40 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
-.|+|||+|..|+-.|..|++.|.+|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998865
No 377
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=93.21 E-value=0.1 Score=50.90 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~ 56 (431)
-.|+|||+|..|+-+|..|++.|.+ |+|+++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999997 999998765
No 378
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.17 E-value=0.36 Score=47.33 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=44.8
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCC
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPS 335 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~ 335 (431)
-..+.+.+.+.++.....-.....|+.|..+ +++++||++.+|+.+.||.||. +.+
T Consensus 94 r~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 94 RDKYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEeccc
Confidence 3456677777777766666678999999987 8999999999999999999885 444
No 379
>PRK06116 glutathione reductase; Validated
Probab=93.14 E-value=0.12 Score=52.34 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
..|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 479999999999999999999999999999988764
No 380
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.10 E-value=0.13 Score=49.52 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|.|||+|--|...|..|+++|++|++++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 369999999999999999999999999999864
No 381
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.07 E-value=0.14 Score=51.59 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 37999999999999999999999999999999877644
No 382
>PRK07121 hypothetical protein; Validated
Probab=93.04 E-value=0.3 Score=49.97 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-Cc--EEEe-CEEEE
Q 014049 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (431)
Q Consensus 277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-d~VI~ 332 (431)
+...+.+.|.+.+++.|++|+++++|++|..+ ++|+++||+..+ |+ +++| +.||+
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~~~~~i~a~k~VVl 233 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVD-DDGRVVGVEARRYGETVAIRARKGVVL 233 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence 34578899999999999999999999999886 257888987643 33 4788 88884
No 383
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.02 E-value=0.11 Score=52.60 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~ 56 (431)
..|.|||+|..||.+|+.||++| ++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 35999999999999999999985 88999997654
No 384
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.90 E-value=0.15 Score=48.62 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~ 56 (431)
.|.|||+|..|+..|..|+..|+ +|.++|.++.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 68999999999999999999987 8999998544
No 385
>PRK12831 putative oxidoreductase; Provisional
Probab=92.81 E-value=0.13 Score=52.28 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
-.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4899999999999999999999999999998764
No 386
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.80 E-value=0.14 Score=49.20 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 387
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=92.80 E-value=0.36 Score=50.46 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-Cc--EEEe-CEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-d~VI~ 332 (431)
..|.++|.+.++.+|++|+++++|.++..+ +++++||++.+ |+ ++.| +.||+
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl 276 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL 276 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence 468899999999999999999999999876 78899987654 33 4676 56774
No 388
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.78 E-value=0.16 Score=43.56 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|-|||.|..|...|..|.++|++|.+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368999999999999999999999999999774
No 389
>PLN02546 glutathione reductase
Probab=92.77 E-value=0.14 Score=53.17 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG 59 (431)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999988754
No 390
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.62 E-value=0.16 Score=48.53 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|.-|...|..|+++|++|.+++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999999999999999999999998753
No 391
>PRK13748 putative mercuric reductase; Provisional
Probab=92.60 E-value=0.15 Score=53.07 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
-.++|||+|..|+-.|..|++.|.+|++++++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 304 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL 304 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 4799999999999999999999999999998653
No 392
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.60 E-value=0.13 Score=47.62 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=26.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-------CcEEEEccC
Q 014049 22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPN 54 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G-------~~V~vlE~~ 54 (431)
..+++|||+|..||++|..+.+.+ .+|+|++-+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 468999999999999999888855 467776644
No 393
>PRK14694 putative mercuric reductase; Provisional
Probab=92.54 E-value=0.17 Score=51.50 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
-.++|||+|..|+-.|..|++.|.+|+++++...
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~ 212 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV 212 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4799999999999999999999999999997533
No 394
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.51 E-value=0.15 Score=48.06 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 48999999999999999999999999999998755
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.45 E-value=0.17 Score=45.18 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+...|+|||+|-.|+..+..|.+.|.+|+|+..+.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34589999999999999999999999999998754
No 396
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.42 E-value=0.16 Score=49.16 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~ 57 (431)
+++.+|+|.||-|..-|..|+.|...+ .+++.|||.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 556799999999999999999999976 789999998864
No 397
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.38 E-value=0.51 Score=47.09 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+|||+|||+|++|++||+.|+++|++|+++|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999874
No 398
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.26 E-value=0.11 Score=40.78 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+.+...|+|||+|-.|..-+..|.+.|.+|+|+-...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4456789999999999999999999999999999885
No 399
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.24 E-value=0.16 Score=47.76 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.|.|||.|.-|.+.|..|+++|++|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 400
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.19 E-value=0.17 Score=51.26 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.|.|+|.|.+|+++|..|.+.|++|.+.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999876
No 401
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.17 E-value=0.18 Score=41.79 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.1
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
++|+|+|..+...|..++.-|++|+|+|.+..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999954
No 402
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.14 E-value=0.18 Score=49.40 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 569999999999999999999999999999864
No 403
>PRK14727 putative mercuric reductase; Provisional
Probab=92.12 E-value=0.2 Score=51.02 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
-.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 479999999999999999999999999999754
No 404
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.11 E-value=0.2 Score=44.58 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
+.+...|+|||||=.|...|..|.++|.+|+|+++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 344568999999999999999999999999999753
No 405
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.11 E-value=0.17 Score=49.87 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
.|.|||+|..|+..|..|+. |++|+++|.+...
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 48999999999999988885 9999999987653
No 406
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=92.10 E-value=0.58 Score=46.25 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=35.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
...+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999999764
No 407
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.09 E-value=0.21 Score=42.50 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=30.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEc
Q 014049 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLD 52 (431)
Q Consensus 19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE 52 (431)
+.+...|+|||||-.|+.-|..|.++|.+|+|+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4456789999999999999999999999999995
No 408
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=92.02 E-value=0.7 Score=48.14 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=46.5
Q ss_pred eecCCc-chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049 273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (431)
Q Consensus 273 ~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (431)
++..++ ..|.++|.+.++..|++|+.++.|.+++++ +|+++||.. .+|+ .+.|+.||+
T Consensus 112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 443344 378899999888899999999999999987 789999864 3565 478999995
No 409
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.01 E-value=0.24 Score=49.98 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
..++|+|.|-+|+++|..|++.|++|.+.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999987764
No 410
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=91.95 E-value=0.55 Score=47.86 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=44.3
Q ss_pred cEEeecCC---cchHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEE---eCCCc--EEEeCEEEEC
Q 014049 270 ALIYPIYG---QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD 333 (431)
Q Consensus 270 ~~~~p~gG---~~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~--~i~Ad~VI~~ 333 (431)
+.+.|.++ .+.+.++|++.+.. .|++++++++|..|..+. ++. +.|+ +.+|+ +++||.||+.
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence 45667776 36888999998864 589999999999997651 333 3444 34453 6999998853
No 411
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.91 E-value=0.2 Score=48.24 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+|.|||+|--|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999854
No 412
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.90 E-value=0.21 Score=48.82 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=38.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CcEEEEccC--------CCCCCcccccChh
Q 014049 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN--------PFYGSHFSSLSIA 67 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~--------~~~GG~~~t~~~~ 67 (431)
.+|+|||+|-.|.++|..|+++| .+|++.+|. ...+++..+...+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 47999999999999999999999 999999998 5566777666544
No 413
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.82 E-value=0.13 Score=41.97 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=30.0
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
......+|.|||+|=.|-..|.+|.++|+.|.-+..++.
T Consensus 6 ~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp ------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred cCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence 344567999999999999999999999999988876543
No 414
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.81 E-value=0.21 Score=51.16 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999999999974
No 415
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.81 E-value=0.27 Score=39.26 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.9
Q ss_pred EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
|||+|.|--|...|..|.+.|.+|+++|++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 69999999999999999998889999999864
No 416
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=91.77 E-value=0.53 Score=47.25 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
.+-+.|.+.+++.|++|+.+++|++|..+ ++++++|+ ++|++++||.||.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~ 158 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL 158 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence 45566778888899999999999999876 67766666 5778899999884
No 417
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.73 E-value=0.2 Score=51.18 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
-.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 36999999999999999999999999999974
No 418
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.68 E-value=0.24 Score=50.00 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|+|+|+|-+|+++|..|+++|++|.+.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 458999999999999999999999999999765
No 419
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.65 E-value=0.2 Score=50.85 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|+|+|.|-+|.+||..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 420
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.61 E-value=0.25 Score=49.95 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=34.6
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+||...--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus 1 ~~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 1 SLMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 356666679999999999999999999999999999876
No 421
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=91.60 E-value=0.58 Score=34.57 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G 322 (431)
-..+.+.+.+..+..|.++++++.|++|..+ +++ +. |+++||
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~-V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDG-VE-VTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTS-EE-EEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCE-EE-EEEecC
Confidence 3467788888889999999999999999987 244 55 888886
No 422
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.58 E-value=0.23 Score=50.83 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.|.|||+|.-|..-|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999864
No 423
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.44 E-value=0.59 Score=48.87 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEeCE-EEE
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL 332 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad~-VI~ 332 (431)
...+...|.+.++..|++|+++++|+++.++ ++|+++||+.. +|+ +++|++ ||+
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d-~~g~V~Gv~~~~~~~~~~i~a~~aVil 269 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITD-PDGAVVGAVVEREGRTLRIGARRGVIL 269 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEEC-CCCcEEEEEEEeCCcEEEEEeceeEEE
Confidence 4567778888888999999999999999986 36899998654 343 467874 774
No 424
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.41 E-value=0.26 Score=44.56 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.8
Q ss_pred cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.|.||| +|.-|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 89999999999999999999997754
No 425
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.36 E-value=0.19 Score=49.41 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhC-----CCcEEEEccCCCCCCccc
Q 014049 18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 18 ~~~~~~DviIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~GG~~~ 62 (431)
++...+||+|||||.+|+.+|+.|+.. .++++++|.....=-+.-
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~ 63 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLC 63 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhc
Confidence 345579999999999999999999864 689999998766544433
No 426
>PRK06847 hypothetical protein; Provisional
Probab=91.34 E-value=0.72 Score=45.18 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=34.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
+..||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4579999999999999999999999999999998764
No 427
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.32 E-value=0.21 Score=51.01 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|..|.-.|..|+++|++|+++|++..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998854
No 428
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.29 E-value=0.24 Score=49.39 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~ 57 (431)
...|.|+|-|.+|++||..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 357999999999999999999999999999988776
No 429
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.26 E-value=0.25 Score=50.09 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~ 56 (431)
-.|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999998 8999998765
No 430
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.26 E-value=0.28 Score=49.91 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 11 ~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
|-+-.|.+... .|.|+|.|-+|+++|..|.+.|.+|.+.|++.
T Consensus 6 ~~~~~~~~~~~--~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 6 PLSALPQELSG--RVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred hhhhcccccCC--eEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 44445555544 48999999999999999999999999999753
No 431
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=91.25 E-value=0.72 Score=45.67 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~ 56 (431)
.|||+|||||++||++|+.|+++| ++|+|+|+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 389999999999999999999996 99999999975
No 432
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=91.24 E-value=0.7 Score=42.87 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-----------CcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-----------GQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-----------G~~i~Ad~VI~ 332 (431)
.++.+.|.+.+...|++|++++.|..+..+ ++++++||.+.. ..+++|+.||.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~-~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILR-EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEe-CCCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 578888999899999999999999999876 244788876531 24789999883
No 433
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.21 E-value=0.4 Score=42.67 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=31.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
....++|+|.|-.|..+|..|.+.|.+|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 34579999999999999999999999999999773
No 434
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=91.20 E-value=0.68 Score=46.55 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=36.8
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCccc
Q 014049 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFS 62 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~ 62 (431)
||||||+|++||+||+.++++| .+|+||||.+..||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~ 40 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA 40 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence 8999999999999999999999 99999999999998643
No 435
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.18 E-value=0.3 Score=48.05 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=31.6
Q ss_pred CcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 21 ~~~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
....|.||| .|+-|-..|..|+++|+.|.++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 445799999 89999999999999999999999864
No 436
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.15 E-value=0.25 Score=50.42 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|+|+|.|.+|++++..|.+.|.+|++.|.+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 369999999999999999999999999999753
No 437
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.90 E-value=0.73 Score=47.91 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEeC-EEEE
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~ 332 (431)
...|.+.|.+.+++.|++|+++++|++|+.+ +++++||+.. +|+ .+.|+ .||+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl 263 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL 263 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence 3578888999999999999999999999987 7899998763 454 47785 5774
No 438
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=90.83 E-value=0.31 Score=48.81 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=32.5
Q ss_pred cEEEECCChhHHHHHHHHhh--------------CCCcEEEEccCCCCCCc
Q 014049 24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~--------------~G~~V~vlE~~~~~GG~ 60 (431)
.++|||+|..|+-.|..|+. .|.+|+++|+.+++...
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~ 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence 79999999999999999875 58999999999887553
No 439
>PRK07045 putative monooxygenase; Reviewed
Probab=90.80 E-value=0.84 Score=45.02 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=43.0
Q ss_pred hHHHHHHHHHH-hcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 280 ~l~~al~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
.|-+.|.+.++ ..|++++++++|+.|..+ +++.++.|++++|++++||.|| ++..
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERD-ADGTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-CCCcEEEEEeCCCCEEECCEEEECCCC
Confidence 56677777665 467999999999999876 3555567888899999999999 4543
No 440
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=90.80 E-value=0.69 Score=45.68 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=32.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
.+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 479999999999999999999999999999998
No 441
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=90.75 E-value=0.84 Score=44.83 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=32.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~ 57 (431)
||+|||||++||++|..|+++| ++|+|+|+++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 8999999999999999999999 999999998754
No 442
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.73 E-value=0.3 Score=50.06 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|..|.-.|..|+++|++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4589999999999999999999999999998865
No 443
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=90.70 E-value=0.71 Score=48.25 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC--Cc-EEEeC-EEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~--G~-~i~Ad-~VI~ 332 (431)
.+|.++|.+.+++.|++|+++++|+++..+ +++++||++.+ ++ .+.|+ .||+
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl 269 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL 269 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence 678899999899999999999999999987 78888987654 33 47786 5774
No 444
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.68 E-value=0.29 Score=46.34 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.|.|||.|..|...|..|+++|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 37899999999999999999999999999874
No 445
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.65 E-value=0.44 Score=39.39 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCc-EEEEccC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~ 54 (431)
...++|||+|=+|-+++..|++.|.+ |+|+-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45799999999999999999999987 9999875
No 446
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.59 E-value=0.39 Score=42.67 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~ 54 (431)
...|+|||+|--|...|..|+++|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4679999999999999999999998 58888876
No 447
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=90.56 E-value=0.92 Score=44.46 Aligned_cols=35 Identities=20% Similarity=0.455 Sum_probs=33.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
||+|||||++||++|..|+++|++|+|+||+..++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 89999999999999999999999999999998875
No 448
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=90.50 E-value=0.31 Score=43.32 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
...|.|||||..|.-.|-..+.+|+.|.++|++.-
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 45799999999999999999999999999999864
No 449
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=90.30 E-value=1.1 Score=41.47 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCC--cEEEEEeCC-----------CcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~~~-----------G~~i~Ad~VI~ 332 (431)
.++.+.|.+.+.+.|++++.++.|+.+..+ ++ ++.||.+.. ..+++|+.||.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 477888888888999999999999999887 44 688887642 24789999883
No 450
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.29 E-value=0.38 Score=45.93 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~ 56 (431)
.|+|||+|..|.++|..|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 5899999999999999999999 58999999754
No 451
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.23 E-value=0.28 Score=52.48 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||||..|.-.|..++++|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998854
No 452
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=90.18 E-value=0.98 Score=47.01 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEeC-EEEE
Q 014049 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (431)
Q Consensus 278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~ 332 (431)
...+.+.|.+.++..|++|+++++|.+|..+ +++++||+.. +|+ +++|+ .||+
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl 263 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL 263 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence 3467788888888899999999999999886 7889888764 454 47886 4774
No 453
>PRK06175 L-aspartate oxidase; Provisional
Probab=90.12 E-value=1 Score=45.32 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
.++||||||+|.+||+||+.++ +|.+|+|+||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999975 79999999999998875
No 454
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=90.11 E-value=0.32 Score=49.47 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
-.|+|+|+|..||.|+..+...|-+|.++|.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999988775
No 455
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.10 E-value=0.35 Score=45.93 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999874
No 456
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=90.00 E-value=1.1 Score=44.37 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 47999999999999999999999999999999875
No 457
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.97 E-value=0.35 Score=52.30 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~ 56 (431)
..|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998865
No 458
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=89.94 E-value=1.2 Score=43.69 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (431)
Q Consensus 20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~ 61 (431)
+.++||||||||+.||++|+.|+++|.+|+|+|++...+|.+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s 43 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAA 43 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcch
Confidence 456899999999999999999999999999999998777443
No 459
>PRK10015 oxidoreductase; Provisional
Probab=89.93 E-value=1.1 Score=45.12 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
.+-+.|.+.+++.|++++.+++|+.|..+ ++++++|+. ++++++||.||.
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~-~~~~i~A~~VI~ 158 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA-GDDILEANVVIL 158 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe-CCeEEECCEEEE
Confidence 44455777788899999999999999876 677777764 566899999994
No 460
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.81 E-value=0.42 Score=45.22 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
..|.|||||.-|---|..++.+|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999999
No 461
>PRK06834 hypothetical protein; Provisional
Probab=89.78 E-value=1.2 Score=45.53 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
..+-+.|.+.++..|.+|+.+++|+.|..+ ++. +.|++.+|++++||.|| |+..
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~--~~~-v~v~~~~g~~i~a~~vVgADG~ 154 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQD--DTG-VDVELSDGRTLRAQYLVGCDGG 154 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecCC
Confidence 456677888888889999999999999876 443 45777788899999988 5543
No 462
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=89.76 E-value=1.3 Score=41.48 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI~ 332 (431)
..+-+.|.+.+++.|++++++++|+++..+ ++++ .|.+. ++++++||.||.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~ 142 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG 142 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence 356677888888899999999999999876 4443 34333 456899999884
No 463
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.72 E-value=0.38 Score=45.76 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049 25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (431)
Q Consensus 25 viIIGaGl~GL~aA~~La~~G~-~V~vlE~~~ 55 (431)
|.|||+|..|...|..|+..|. +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999985
No 464
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.72 E-value=0.47 Score=45.28 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~ 56 (431)
..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999999655
No 465
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.65 E-value=0.39 Score=48.05 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
-.|.|||-|.+|.++|..|.+.|++|.+.|.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 3699999999999999999999999999997653
No 466
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=89.63 E-value=0.87 Score=45.14 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~ 332 (431)
-.|.+.+....+..|.++++++.+.++.-. ++|+++-|.+.+|.++.||.||+
T Consensus 255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~-~~Gev~~V~l~dg~~l~adlvv~ 307 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGN-SDGEVSEVKLKDGKTLEADLVVV 307 (478)
T ss_pred HHHHHHHHHHHHhcCeEEEEecceeecccC-CCCcEEEEEeccCCEeccCeEEE
Confidence 467788888899999999999999999876 36899999999999999999994
No 467
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=89.58 E-value=1.4 Score=46.61 Aligned_cols=40 Identities=20% Similarity=0.363 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~ 60 (431)
+.|||||||||+.|+++|+.|+++|++|+|+|+++..+|-
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT 109 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence 4599999999999999999999999999999999877663
No 468
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.57 E-value=0.39 Score=51.34 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||||..|.-.|..++++|++|+++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 469
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=89.52 E-value=0.63 Score=45.70 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 20 PTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 20 ~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.....|+|.|+ |+-|..++..|.++|++|+.+.+..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34567999998 9999999999999999999998753
No 470
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.36 E-value=0.55 Score=43.66 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=33.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCcc
Q 014049 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~ 61 (431)
...|+|||.|-.|..+|..|+++| .+++++|....--...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl 70 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT 70 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc
Confidence 457999999999999999999999 7899999775544443
No 471
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.35 E-value=0.47 Score=48.63 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|.|+|.|-+|+++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 359999999999999999999999999999865
No 472
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.32 E-value=0.43 Score=48.42 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHH-HHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 36999999999999 59999999999999998765
No 473
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.30 E-value=0.4 Score=48.49 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=28.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..|+|+|.|.+|.+||..|.+ |.+|+|.|.+.
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~ 38 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK 38 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence 469999999999999999995 99999999653
No 474
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.27 E-value=0.85 Score=34.32 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.1
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCcEEEEcc
Q 014049 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP 53 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~ 53 (431)
...++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 688999988
No 475
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.23 E-value=0.47 Score=46.97 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
-.|+|+|+|.-|+.+|..|...|.+|+|+|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4799999999999999999999999999998753
No 476
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=89.22 E-value=1.4 Score=45.89 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (431)
..+.++|.+.+.+.|.+|+.++.|+++..+ +|+++||.. .+|+ .+.|+.||+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 185 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL 185 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence 367888888888889999999999999987 788888764 3565 579999885
No 477
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.16 E-value=1.6 Score=45.51 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=46.7
Q ss_pred EeecCCc-chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049 272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (431)
Q Consensus 272 ~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~ 332 (431)
+++..+. ..|.++|.+.+.+.|.+|+.++.+.+++.+ ++|+++||.. .+|+ .+.|+.||+
T Consensus 118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 183 (570)
T PRK05675 118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSKATVL 183 (570)
T ss_pred EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence 3444433 478899998888899999999999999985 3689999864 3565 468999995
No 478
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=89.10 E-value=0.41 Score=48.39 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.+|.|||.|..|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998755
No 479
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=89.06 E-value=0.5 Score=44.78 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999875
No 480
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.05 E-value=0.88 Score=45.03 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=35.1
Q ss_pred CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 13 ~~~~~~~~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
.++.+.+.+...|+|+|| |..|..++..|.++|++|.++.++.
T Consensus 51 ~~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 51 QSFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 344445555667999997 9999999999999999999998864
No 481
>PRK12839 hypothetical protein; Provisional
Probab=89.01 E-value=1.2 Score=46.50 Aligned_cols=53 Identities=28% Similarity=0.363 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CCc-EEEe-CEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ-DILS-HKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~-~i~A-d~VI~ 332 (431)
..|.+.|.+.+++.|++|+++++|++|..+ ++|+++||+.. +|+ ++.+ +.||+
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~-~~g~V~GV~~~~~~g~~~i~aak~VVL 270 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTD-KNGRVTGVRVQGPDGAVTVEATRGVVL 270 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEeCCEEEE
Confidence 567888989899999999999999999875 36889998653 444 3444 77774
No 482
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.01 E-value=0.54 Score=44.62 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
...|+|||.|-.|..+|..|.+.|.+|++++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3589999999999999999999999999999984
No 483
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.97 E-value=1.3 Score=46.17 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~ 332 (431)
..|.++|.+.+...|.+++.++.+.++..+ +|+++||... +|+ .++|+.||+
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVL 192 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTKAVVL 192 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeCeEEE
Confidence 468888988888889999999999999987 7999998754 333 578999995
No 484
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=88.91 E-value=0.5 Score=41.83 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~ 54 (431)
-+.|+|+|--|.+.|.+|+++|++|.+-=++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 4789999999999999999999999986443
No 485
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=88.81 E-value=0.59 Score=42.97 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
...++|+|+|.-+...|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 35899999999999999999999999999997765
No 486
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.75 E-value=0.69 Score=44.42 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY 57 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~ 57 (431)
...|+|||+|..|...|..|+..|. +|.++|.++..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 3579999999999999999999996 89999988764
No 487
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.74 E-value=1.4 Score=46.60 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049 283 QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (431)
Q Consensus 283 ~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~ 332 (431)
+.|.+.++..|++|++++.|.++..+ +|+++||... +|+ .+.|+.||+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~AkaVVL 226 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTADAVVL 226 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCEEEE
Confidence 66666777889999999999999987 7899998764 454 578999995
No 488
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.61 E-value=0.84 Score=42.18 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.3
Q ss_pred cccEEEECC-C-hhHHHHHHHHhhCCCcEEEEccCC
Q 014049 22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 22 ~~DviIIGa-G-l~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
..-++|.|+ | --|...|..|+++|++|++.+++.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356999997 5 478999999999999999987653
No 489
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=88.58 E-value=0.45 Score=51.06 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||+|..|.-.|..++.+|++|+++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 4699999999999999999999999999998864
No 490
>PLN02256 arogenate dehydrogenase
Probab=88.50 E-value=0.66 Score=44.16 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=30.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~ 55 (431)
...|.|||.|.-|-+.|..|+++|++|.++++++
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 4579999999999999999999999999999875
No 491
>PRK07588 hypothetical protein; Provisional
Probab=88.47 E-value=1.2 Score=43.94 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=38.6
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p 334 (431)
..|.+.|.+.+ ..|++|+++++|++|..+ ++. +.|++++|++++||.|| ++.
T Consensus 103 ~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~~d~vIgADG 155 (391)
T PRK07588 103 GDLAAAIYTAI-DGQVETIFDDSIATIDEH--RDG-VRVTFERGTPRDFDLVIGADG 155 (391)
T ss_pred HHHHHHHHHhh-hcCeEEEeCCEEeEEEEC--CCe-EEEEECCCCEEEeCEEEECCC
Confidence 35556665543 347899999999999875 444 45788899999999999 444
No 492
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=88.35 E-value=0.85 Score=38.39 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (431)
Q Consensus 22 ~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~ 55 (431)
...++|||+|..|...|..|++.| ++|.+++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 357999999999999999999996 8899998864
No 493
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=88.35 E-value=0.48 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
.+.|+|+|--|+..|++|+++|..|+++=+.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 589999999999999999999988888877764
No 494
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.26 E-value=1.7 Score=42.75 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
..+-+.|.+.++.+|+..+++++|.++..+ ++. +.|++++|++++||.|| ++..
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~a~~vI~AdG~ 165 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPR--EDE-VTVTLADGTTLSARLVVGADGR 165 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEc--CCe-EEEEECCCCEEEEeEEEEecCC
Confidence 467788888888887777999999999875 444 45778889999999998 4543
No 495
>PRK07190 hypothetical protein; Provisional
Probab=88.21 E-value=1.5 Score=44.76 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS 335 (431)
Q Consensus 279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~ 335 (431)
..+-+.|.+.+++.|++|+++++|+.|..+ ++. +.|.+.+|++++|+.|| ++..
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~--~~~-v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELN--QAG-CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCe-eEEEECCCcEEEeCEEEECCCC
Confidence 345566777778899999999999999886 343 34556788899999999 4543
No 496
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=88.18 E-value=0.75 Score=46.34 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G 58 (431)
.+|+|||+|-+|...|..|++.|.+|+++=|++-..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 689999999999999999999999999998887655
No 497
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=88.17 E-value=1.4 Score=45.28 Aligned_cols=59 Identities=25% Similarity=0.247 Sum_probs=43.4
Q ss_pred EEeecCCc--chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC---Cc--EEEeCEEEE
Q 014049 271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---GQ--DILSHKLVL 332 (431)
Q Consensus 271 ~~~p~gG~--~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G~--~i~Ad~VI~ 332 (431)
+.|+.|-. ..++.++++.++..|++++.+++|.+|..+ ++. ++|++.+ |+ +++|+.||.
T Consensus 145 ~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~~VVn 210 (508)
T PRK12266 145 FEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRARALVN 210 (508)
T ss_pred EEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcCEEEE
Confidence 44544422 467778888889999999999999999875 443 5666543 53 689999994
No 498
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.10 E-value=0.68 Score=46.58 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (431)
Q Consensus 23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~ 56 (431)
..|.|||-|-+|.+++..|++.|++|++.|.+..
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 4689999999999999999999999999998653
No 499
>PLN02572 UDP-sulfoquinovose synthase
Probab=88.05 E-value=1.1 Score=45.25 Aligned_cols=44 Identities=23% Similarity=0.241 Sum_probs=33.6
Q ss_pred CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEcc
Q 014049 10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDP 53 (431)
Q Consensus 10 ~~~~~~~~~~~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~ 53 (431)
-|+.+..+-.-+...|+|.|| |+-|...+.+|+++|++|.++++
T Consensus 35 ~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 35 TPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred CCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 344333333333457999996 99999999999999999999985
No 500
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=88.02 E-value=1.9 Score=45.08 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=35.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCc
Q 014049 21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH 60 (431)
Q Consensus 21 ~~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~ 60 (431)
.++||||||+|++||+||+.++++| .+|+|+||....||.
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 4689999999999999999999875 899999999877774
Done!