BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014050
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H12|A Chain A, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|B Chain B, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|C Chain C, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|D Chain D, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|E Chain E, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
pdb|2H12|F Chain F, Structure Of Acetobacter Aceti Citrate Synthase Complexed
With Oxaloacetate And Carboxymethyldethia Coenzyme A
(Cmx)
Length = 436
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 177/386 (45%), Positives = 243/386 (62%), Gaps = 20/386 (5%)
Query: 50 GNLKGSLTVVDERTGKRYQIPVSQEGTV--KATDFKKITTGKNDKGLKLYDPGYLNTAPV 107
G L + VD GK ++PV GT+ D +K+ G+ +DPGY TA
Sbjct: 8 GKLSTATISVD---GKSAEMPV-LSGTLGPDVIDIRKLPA---QLGVFTFDPGYGETAAC 60
Query: 108 RSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167
S I +IDGD+G+L +RGYPI +LAE++S+ EV YLL+ G LP+++Q + ++ H+
Sbjct: 61 NSKITFIDGDKGVLLHRGYPIAQLAENASYEEVIYLLLNGELPNKAQYDTFTNTLTNHTL 120
Query: 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARIL 227
+ + I + DAHPM +L + ALS F+PDAN DI RD R++
Sbjct: 121 LHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPDAN------DIAIPAN-RDLAAMRLI 173
Query: 228 GKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFIL 287
K PTIAA AY G + P N+L+Y+ENFL M+ + + YK NP LAR ++ + IL
Sbjct: 174 AKIPTIAAWAYKYTQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILIL 233
Query: 288 HAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIP 347
HA+HE N STS R S+G + + +A + AL+GP HGGANEAVLKML IG ENIP
Sbjct: 234 HADHEQNASTSTVRLAGSTGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIP 293
Query: 348 EFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG--RDPLIEVAVALEK 403
FI VK++ K+ GFGHRVYKN+DPRAK++++ EV + +G DPL+++AV LEK
Sbjct: 294 AFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEK 353
Query: 404 AALSDEYFVKRKLYPNVDFYSGLIYR 429
ALSD+YFV+RKLYPNVDFYSG+I +
Sbjct: 354 IALSDDYFVQRKLYPNVDFYSGIILK 379
>pdb|3L96|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L96|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli
pdb|3L97|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L97|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With S-
Carboxymethyl-Coa
pdb|3L98|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L98|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Nadh
pdb|3L99|A Chain A, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
pdb|3L99|B Chain B, Structural Determination Of The
A50t:s279g:s280k:v281k:k282e:h283n Variant Of Citrate
Synthase From E. Coli Complexed With Oxaloacetate
Length = 426
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 222/347 (63%), Gaps = 22/347 (6%)
Query: 92 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPS 151
KG+ +DPG+ +T S I +IDGDEGIL +RG+PI++LA S++LEV Y+L+ G P+
Sbjct: 37 KGVFTFDPGFTSTTSCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPT 96
Query: 152 ESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA----NPAL 207
+ Q +++ V++H+ + + I + A D+HPM V+ AL+ F+ D+ NP
Sbjct: 97 QEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNP-- 154
Query: 208 KGQDIYKSKQVRDKQIA--RILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDS 265
R ++IA R+L K PT+AA Y G+P V P N+LSY+ NFL M+ S
Sbjct: 155 -----------RHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFS 203
Query: 266 LGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPL 325
Y+ NP L R +D + ILHA+HE N STS R SSG + + +A + +L+GP
Sbjct: 204 TPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPA 263
Query: 326 HGGANEAVLKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAE 383
HGGANEA LKML EIG ENIPEF+ K++ ++ GFGHRVYKNYDPRA V+R+
Sbjct: 264 HGGANEAALKMLEEIGKKENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCH 323
Query: 384 EVFSIVG-RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
EV +G +D L+EVA+ LE AL+D YF+++KLYPNVDFYSG+I +
Sbjct: 324 EVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILK 370
>pdb|1NXE|A Chain A, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXE|B Chain B, A Novel Nadh Allosteric Regulator Site Is Found On The
Surfa Hexameric Type Ii Phe383ala Variant Of Citrate
Synthase
pdb|1NXG|A Chain A, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
pdb|1NXG|B Chain B, The F383a Variant Of Type Ii Citrate Synthase Complexed
With
Length = 427
Score = 310 bits (794), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 223/347 (64%), Gaps = 22/347 (6%)
Query: 92 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPS 151
KG+ +DPG+ +TA S I +IDGDEGIL +RG+PI++LA S++LEV Y+L+ G P+
Sbjct: 38 KGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPT 97
Query: 152 ESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA----NPAL 207
+ Q +++ V++H+ + + I + A D+HPM V+ AL+ F+ D+ NP
Sbjct: 98 QEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNP-- 155
Query: 208 KGQDIYKSKQVRDKQIA--RILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDS 265
R ++IA R+L K PT+AA Y G+P V P N+LSY+ NFL M+ S
Sbjct: 156 -----------RHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFS 204
Query: 266 LGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPL 325
Y+ NP L R +D + ILHA+HE N STS R SSG + + +A + +L+GP
Sbjct: 205 TPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPA 264
Query: 326 HGGANEAVLKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAE 383
HGGANEA LKML EI +V++IPEF K++ ++ GFGHRVYKNYDPRA V+R+
Sbjct: 265 HGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCH 324
Query: 384 EVFSIVG-RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
EV +G +D L+EVA+ LE AL+D YF+++KLYPNVDFYSG+I +
Sbjct: 325 EVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILK 371
>pdb|1K3P|A Chain A, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
pdb|1K3P|B Chain B, Three Dimensional Structure Analysis Of The Type Ii
Citrate From E.Coli
Length = 426
Score = 310 bits (794), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 223/347 (64%), Gaps = 22/347 (6%)
Query: 92 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPS 151
KG+ +DPG+ +TA S I +IDGDEGIL +RG+PI++LA S++LEV Y+L+ G P+
Sbjct: 37 KGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPT 96
Query: 152 ESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA----NPAL 207
+ Q +++ V++H+ + + I + A D+HPM V+ AL+ F+ D+ NP
Sbjct: 97 QEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNP-- 154
Query: 208 KGQDIYKSKQVRDKQIA--RILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDS 265
R ++IA R+L K PT+AA Y G+P V P N+LSY+ NFL M+ S
Sbjct: 155 -----------RHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFS 203
Query: 266 LGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPL 325
Y+ NP L R +D + ILHA+HE N STS R SSG + + +A + +L+GP
Sbjct: 204 TPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPA 263
Query: 326 HGGANEAVLKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAE 383
HGGANEA LKML EI +V++IPEF K++ ++ GFGHRVYKNYDPRA V+R+
Sbjct: 264 HGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCH 323
Query: 384 EVFSIVG-RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
EV +G +D L+EVA+ LE AL+D YF+++KLYPNVDFYSG+I +
Sbjct: 324 EVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILK 370
>pdb|1OWB|A Chain A, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWB|B Chain B, Three Dimensional Structure Analysis Of The Variant R109l
Nadh Complex Of Type Ii Citrate Synthase From E. Coli
pdb|1OWC|A Chain A, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
pdb|1OWC|B Chain B, Three Dimensional Structure Analysis Of The R109l Variant
Of The Type Ii Citrate Synthase From E. Coli
Length = 427
Score = 309 bits (791), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 222/347 (63%), Gaps = 22/347 (6%)
Query: 92 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPS 151
KG+ +DPG+ +TA S I +IDGDEGIL +RG+PI++LA S++LEV Y+L+ G P+
Sbjct: 38 KGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPT 97
Query: 152 ESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDA----NPAL 207
+ Q +++ V+ H+ + + I + A D+HPM V+ AL+ F+ D+ NP
Sbjct: 98 QEQYDEFKTTVTLHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNP-- 155
Query: 208 KGQDIYKSKQVRDKQIA--RILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDS 265
R ++IA R+L K PT+AA Y G+P V P N+LSY+ NFL M+ S
Sbjct: 156 -----------RHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFS 204
Query: 266 LGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPL 325
Y+ NP L R +D + ILHA+HE N STS R SSG + + +A + +L+GP
Sbjct: 205 TPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPA 264
Query: 326 HGGANEAVLKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAE 383
HGGANEA LKML EI +V++IPEF K++ ++ GFGHRVYKNYDPRA V+R+
Sbjct: 265 HGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCH 324
Query: 384 EVFSIVG-RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
EV +G +D L+EVA+ LE AL+D YF+++KLYPNVDFYSG+I +
Sbjct: 325 EVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILK 371
>pdb|4E6Y|A Chain A, Type Ii Citrate Synthase From Vibrio Vulnificus
Length = 432
Score = 306 bits (785), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/341 (45%), Positives = 214/341 (62%), Gaps = 10/341 (2%)
Query: 92 KGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPS 151
G +DPG+L TA S I YIDG +GIL +RGYPI++LA ++ +LEV Y+L+YG P+
Sbjct: 41 NGYFTFDPGFLATASCESQITYIDGGKGILLHRGYPIDQLANNADYLEVCYILLYGEAPT 100
Query: 152 ESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQD 211
Q ++ V++H+ V + I DAHP V + AL+ F+ D+ D
Sbjct: 101 REQYEKFKTTVTRHTXVHEQIASFFHGFRRDAHPXAVXCGVVGALAAFYHDS------LD 154
Query: 212 IYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAY 271
I R+ R+L K PT+AA Y G+P + P N+LSY+ENFL+ + Y
Sbjct: 155 INNDLH-REITAYRLLSKXPTLAAXCYKYSTGQPFIYPRNDLSYAENFLHXXFATPCEEY 213
Query: 272 KPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANE 331
+ NP +AR D +F LHA+HE N STS R SSG + + +A + +L+GP HGGANE
Sbjct: 214 EVNPVVARAXDKIFTLHADHEQNASTSTVRLAGSSGANPFACIAAGIASLWGPAHGGANE 273
Query: 332 AVLKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIV 389
A LK L EIG+V+NIPE+++ K++ ++ GFGHRVYKNYDPRA V R+ EV +
Sbjct: 274 ACLKXLEEIGSVDNIPEYVDRAKDKDDPFRLXGFGHRVYKNYDPRATVXRETCHEVLKEL 333
Query: 390 G-RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
+DPL++VA LE+ ALSDEYFV +KLYPNVDFYSG+I +
Sbjct: 334 NIQDPLLDVAXELERIALSDEYFVSKKLYPNVDFYSGIILK 374
>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
Tular
pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
Tular
Length = 427
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 211/341 (61%), Gaps = 15/341 (4%)
Query: 93 GLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSE 152
G+ YDPG+++TA S I YIDG +G+L +RGYPIEE + S++ + Y L+YG LP++
Sbjct: 47 GIFTYDPGFMSTAACESKITYIDGGKGVLLHRGYPIEEWTQKSNYRTLCYALIYGELPTD 106
Query: 153 SQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDI 212
Q+ + + V + + I AMP HPM L++ ++ L+ H GQ
Sbjct: 107 EQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEHIH-----NGQ-- 159
Query: 213 YKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYK 272
K+ +D+ I+ K TIAA AY G+ + P Y+ENFLYM+ + + +YK
Sbjct: 160 ---KESQDEVAKNIVAKIATIAAMAYRHNHGKKFLEPKMEYGYAENFLYMMFA-DDESYK 215
Query: 273 PNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEA 332
P+ + +D +F+LHA+HE N STS R S+G Y A+ + AL+GP HGGANEA
Sbjct: 216 PDELHIKAMDTIFMLHADHEQNASTSTVRLSGSTGNSPYAAIIAGITALWGPAHGGANEA 275
Query: 333 VLKMLNEIGTVENIPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG 390
VLKML+EIG+ ENI ++I K++ ++ GFGHRVYKN DPRA ++K EE+ + +G
Sbjct: 276 VLKMLSEIGSTENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEILAKLG 335
Query: 391 R--DPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYR 429
+PL+ VA LE+ AL DE+F++RKL+ NVDFYSG+I +
Sbjct: 336 HSDNPLLTVAKKLEEIALQDEFFIERKLFSNVDFYSGIILK 376
>pdb|1AJ8|A Chain A, Citrate Synthase From Pyrococcus Furiosus
pdb|1AJ8|B Chain B, Citrate Synthase From Pyrococcus Furiosus
Length = 371
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 190/321 (59%), Gaps = 18/321 (5%)
Query: 108 RSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167
+++ICYIDG EG L YRGY +EELAE S+F EV YLL +G LPS S+L +++ +++
Sbjct: 12 QTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRG 71
Query: 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARIL 227
+P+ +++I++A+P + HPMG L + +S L + + +++Y+ +
Sbjct: 72 LPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIG-------ISVT 124
Query: 228 GKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFIL 287
K PTI A Y G V P LS++ NFLYML +P + +DV IL
Sbjct: 125 AKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYML-----HGEEPPKEWEKAMDVALIL 179
Query: 288 HAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIP 347
+AEHE+N ST A + S+ D Y+A+ +GAL GP+HGGA E +K EIG+ E +
Sbjct: 180 YAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVE 239
Query: 348 EFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALS 407
E+ +KRK+ G GHRVYK YDPRA++ +K A S +G L E+A LE+ L
Sbjct: 240 EWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYA----SKLGDKKLFEIAERLER--LV 293
Query: 408 DEYFVKRKLYPNVDFYSGLIY 428
+EY K+ + NVD++SGL++
Sbjct: 294 EEYLSKKGISINVDYWSGLVF 314
>pdb|1IOM|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|A Chain A, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|B Chain B, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|C Chain C, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
pdb|1IXE|D Chain D, Crystal Structure Of Citrate Synthase From Thermus
Thermophilus Hb8
Length = 377
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 186/320 (58%), Gaps = 15/320 (4%)
Query: 109 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAV 168
S +CYIDG +G L Y G PI+ELAE SSF E +LL++G LP +L ++ A+++ A+
Sbjct: 15 SRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRAL 74
Query: 169 PQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILG 228
P +L+ + P AHPM L +A+S + P DI S++ ++ ++
Sbjct: 75 PAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTEG------DI--SREALYEKGLDLIA 126
Query: 229 KAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH 288
K TI AA G+ P+ P +LS++ NFLYM + + +P+P AR++D ILH
Sbjct: 127 KFATIVAANKRLKEGKEPIPPREDLSHAANFLYMANGV-----EPSPEQARLMDAALILH 181
Query: 289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPE 348
AEH N ST A S+ D+Y+A+ AV +L GP HGGANEAV++M+ EIGT E E
Sbjct: 182 AEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERARE 241
Query: 349 FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD 408
++ +K ++ G GHRVYK +DPRA V+ KLA V G ++ +E+ A
Sbjct: 242 WVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEA--G 299
Query: 409 EYFVKRKLYPNVDFYSGLIY 428
+ R +YPNVDFYSG++Y
Sbjct: 300 KVLNPRGIYPNVDFYSGVVY 319
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 202/330 (61%), Gaps = 16/330 (4%)
Query: 109 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAV 168
+SI IDG++GIL YRGY IEELA S++ EV+YL++YG LP++ +L D+ + ++ +
Sbjct: 34 TSISDIDGEKGILWYRGYRIEELARLSTYEEVSYLILYGRLPTKRELEDYINRMKKYREL 93
Query: 169 PQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA---- 224
+++I+ + AHPM L +A++A + D ++ + + K +K++A
Sbjct: 94 HPATVEVIRNLA-KAHPMFALEAAVAAEGAYDEDNQKLIEALSVGRYK-AEEKELAYRIA 151
Query: 225 -RILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDV 283
+++ K PTI A Y G V P ++L ++ NFLYM+ G +P+P +R +D+
Sbjct: 152 EKLVAKMPTIVAYHYRFSRGLEVVRPRDDLGHAANFLYMM--FGR---EPDPLASRGIDL 206
Query: 284 LFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTV 343
ILHA+HE+ ST AA +AS+ D+Y+++A A+ AL GPLHGGANE ++ EIGT
Sbjct: 207 YLILHADHEVPASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGGANEMAVRNYLEIGTP 266
Query: 344 ENIPEFIE-GVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDP--LIEVAVA 400
E +E K K+ G GHRVYK YDPRAK+ ++ + + + G DP L +A A
Sbjct: 267 AKAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRDYVAKFG-DPQNLFAIASA 325
Query: 401 LEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430
+E+ LS YF +RKLYPNVDF+SG+ + Y
Sbjct: 326 IEQEVLSHPYFQQRKLYPNVDFWSGIAFYY 355
>pdb|2P2W|A Chain A, Crystal Structure Of Citrate Synthase From Thermotoga
Maritima Msb8
Length = 367
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 189/320 (59%), Gaps = 26/320 (8%)
Query: 109 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAV 168
SSICY+DG G L YRG P+EELAE S+F E AY L YG LP++S+L +++ ++ + +
Sbjct: 14 SSICYLDGINGRLYYRGIPVEELAEKSTFEETAYFLWYGKLPTKSELEEFKRKMADYREL 73
Query: 169 PQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILG 228
P L I+ +P + H + VL +S + ++ G D + +R+K I R+
Sbjct: 74 PAEALGILYHLPKNLHYIDVLKIFLSI--------HGSMDGND----EDLREKAI-RVAS 120
Query: 229 KAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH 288
PTI A Y G+ + P +LS+ ENF YM+ G R K R+L+ FIL
Sbjct: 121 VFPTILAYYYRYSKGKELIRPRKDLSHVENFYYMM--FGERNEK-----IRLLESAFILL 173
Query: 289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPE 348
E ++N ST AA +AS+ D+Y+ + GA+GAL GPLHGGA+E V ML EIG+ + + E
Sbjct: 174 MEQDINASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDRVEE 233
Query: 349 FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD 408
F++ KRK+ GFGHRVYK YDPRA ++++ +E F L +A LE+ +S+
Sbjct: 234 FVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFP---DSKLFRIASKLEEYIVSN 290
Query: 409 EYFVKRKLYPNVDFYSGLIY 428
+ + +YPNVD YS +++
Sbjct: 291 KI---KNIYPNVDLYSSVLF 307
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 189/320 (59%), Gaps = 17/320 (5%)
Query: 109 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAV 168
+ I YIDG+ G L YRGY I +LAE S+F EV+YL++YG LP+ +L ++ + + +
Sbjct: 15 TEITYIDGELGRLYYRGYSIYDLAEFSNFEEVSYLILYGKLPNREELNWFQEKLREERYL 74
Query: 169 PQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILG 228
P I+ ++ + DA PM +L +A+S L I D+ K+ + D + +++
Sbjct: 75 PDFIIKFLREVRKDAQPMDILRTAVSLLGI--EDS----------KNDERTDIKGIKLIS 122
Query: 229 KAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH 288
K PTI A G + P LS+SENFLYML G+R PN ++ +DV ILH
Sbjct: 123 KFPTIVANYARLRKGLDIIEPDPKLSHSENFLYML--YGDR---PNEIKSKAMDVTLILH 177
Query: 289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPE 348
+HEMN ST A+ +AS+ D+Y+++ + AL GPLHGGAN LKM EIG+ E + +
Sbjct: 178 IDHEMNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEIGSPEKVND 237
Query: 349 FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD 408
+I + K+++ GFGHRVYK YDPRA+++++ A+ + G + +A + +
Sbjct: 238 YILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIGI 297
Query: 409 EYFVKRKLYPNVDFYSGLIY 428
+Y + +YPNVDF+S +++
Sbjct: 298 KYLGPKGIYPNVDFFSSIVF 317
>pdb|1O7X|A Chain A, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|B Chain B, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|C Chain C, Citrate Synthase From Sulfolobus Solfataricus
pdb|1O7X|D Chain D, Citrate Synthase From Sulfolobus Solfataricus
Length = 377
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/325 (37%), Positives = 187/325 (57%), Gaps = 25/325 (7%)
Query: 109 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAV 168
+++ +IDG++GILRYRGY IE+L S+ E YL++YG LP++ +L D + +++ V
Sbjct: 16 TNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEV 75
Query: 169 PQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILG 228
PQ +LD I MP +A +G+L +AL+ D N K D ++K I+ I+
Sbjct: 76 PQEVLDTIYLMPKEADAIGLLEVGTAALASI--DKNFKWKEND-------KEKAIS-IIA 125
Query: 229 KAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH 288
K T+ A Y R G P +P + S++++FL L + A +P +D IL+
Sbjct: 126 KMATLVANVYRRKEGNKPRIPEPSDSFAKSFL-----LASFAREPTTDEINAMDKALILY 180
Query: 289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPE 348
+HE+ ST+AA AS+ D+Y++L A+ AL GPLHGGA E K EIG +
Sbjct: 181 TDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGDPNRVQN 240
Query: 349 -FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDP----LIEVAVALEK 403
F + V N+K ++ GFGHRVYK YDPRAK+ +KLA +++ R+ E+A LE+
Sbjct: 241 WFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLA---LTLIERNADARRYFEIAQKLEE 297
Query: 404 AALSDEYFVKRKLYPNVDFYSGLIY 428
+ F + +YPN DFYSG+++
Sbjct: 298 LGIKQ--FSSKGIYPNTDFYSGIVF 320
>pdb|1VGM|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
pdb|1VGM|B Chain B, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 378
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 186/336 (55%), Gaps = 29/336 (8%)
Query: 100 GYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWE 159
G N + + YIDG GILRYRGY I +L +S+ E+ +L++YG LP+ QL +
Sbjct: 8 GLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQLNQIK 67
Query: 160 FAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSAL-SIFHPDANPALKGQDIYKSKQV 218
+++ VP+ ++ I +MP + +G++ +A L SI+ P N A
Sbjct: 68 GIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRA------------ 115
Query: 219 RDKQIA-RILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRL 277
+K++A +I+ K TI A Y G P +P + SY+E+FL + G KP
Sbjct: 116 TNKELAVQIIAKTATITANIYRAKEGLKPKIPEPSESYAESFL--AATFGK---KPTQEE 170
Query: 278 ARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKML 337
+ +D IL+ +HE+ ST+AA +S+ D+Y+ + A+ AL GPLHGGA E K
Sbjct: 171 IKAMDASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQF 230
Query: 338 NEIGTVENIPE-FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLI- 395
EIG+VEN + F E + K ++ GFGHRVYK YDPRAK+ + LA+ S ++ +
Sbjct: 231 VEIGSVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAK---SFAEKNENVK 287
Query: 396 ---EVAVALEKAALSDEYFVKRKLYPNVDFYSGLIY 428
E+A +EK L + F + +YPN DFYSG+++
Sbjct: 288 KYYEIAERIEK--LGVDTFGSKHIYPNTDFYSGIVF 321
>pdb|2C6X|A Chain A, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|B Chain B, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|C Chain C, Structure Of Bacillus Subtilis Citrate Synthase
pdb|2C6X|D Chain D, Structure Of Bacillus Subtilis Citrate Synthase
Length = 363
Score = 187 bits (476), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 180/329 (54%), Gaps = 31/329 (9%)
Query: 107 VRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHS 166
V +SI +IDG++G L YRG+ +++A + SF E AYL+++G LPS +L ++ ++
Sbjct: 11 VETSISHIDGEKGRLIYRGHHAKDIALNHSFEEAAYLILFGKLPSTEELQVFKDKLAAER 70
Query: 167 AVPQGILDIIQAMPHDAHPMGVLVSAMSALS----IFHPDANPALKGQDIYKSKQVRDKQ 222
+P+ I +IQ++P++ M VL + +SAL FHP A+
Sbjct: 71 NLPEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTFHPKTEEAI--------------- 115
Query: 223 IARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLD 282
R++ P+I A G + PS+ + EN+ YML +P+ + L+
Sbjct: 116 --RLIAITPSIIAYRKRWTRGEQAIAPSSQYGHVENYYYMLT-----GEQPSEAKKKALE 168
Query: 283 VLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGT 342
IL EH MN ST +AR S+ D+ +A+ A+G + GPLHGGA AV KML +IG
Sbjct: 169 TYMILATEHGMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLEDIGE 228
Query: 343 VENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALE 402
E+ +++ + ++ GFGHRVYK DPRA+ +R+ AEEV G D +++A+ +E
Sbjct: 229 KEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEV---AGNDRDLDLALHVE 285
Query: 403 KAA--LSDEYFVKRKLYPNVDFYSGLIYR 429
A L + Y RKLY NV+FY+ + R
Sbjct: 286 AEAIRLLEIYKPGRKLYTNVEFYAAAVMR 314
>pdb|3HWK|A Chain A, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|B Chain B, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|C Chain C, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|D Chain D, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|E Chain E, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|F Chain F, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|G Chain G, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
pdb|3HWK|H Chain H, Crystal Structure Of Methylcitrate Synthase From
Mycobacterium Tuberculosis
Length = 414
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/308 (34%), Positives = 163/308 (52%), Gaps = 20/308 (6%)
Query: 121 LRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMP 180
L YRGYP+++LA SF +VA+LL G LP++++L + V + +L ++ +P
Sbjct: 73 LTYRGYPVQDLAARCSFEQVAFLLWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLP 132
Query: 181 HDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLR 240
+ HPM V+ +A+S L PD + A + + R++ PTI A R
Sbjct: 133 DNCHPMDVVRTAISYLGAEDPDEDDAAANR----------AKAMRMMAVLPTIVAIDMRR 182
Query: 241 MAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAA 300
G PP+ P + L Y++NFL+M G P + + IL+AEH N ST AA
Sbjct: 183 RRGLPPIAPHSGLGYAQNFLHM--CFGE---VPETAVVSAFEQSMILYAEHGFNASTFAA 237
Query: 301 RHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKM 360
R + S+ D+Y+A+ GA+GAL G LHGGANEAV+ + EIG N E++ RK K+
Sbjct: 238 RVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEIGDPANAREWLRAKLARKEKI 297
Query: 361 SGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNV 420
GFGHRVY++ D R +++ E V ++ +++ L+ E + PN+
Sbjct: 298 MGFGHRVYRHGDSRVPTMKRALERVGTVRDGQRWLDI-----YQVLAAEMASATGILPNL 352
Query: 421 DFYSGLIY 428
DF +G Y
Sbjct: 353 DFPTGPAY 360
>pdb|1A59|A Chain A, Cold-Active Citrate Synthase
Length = 378
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 170/329 (51%), Gaps = 27/329 (8%)
Query: 109 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAV 168
++I ++ D L YRGYP++ELA SF +VAYLL LP++S+L + H +
Sbjct: 17 TAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKL 76
Query: 169 PQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILG 228
+ + I + HPM V +A+S L H + QD S + ++ +L
Sbjct: 77 DENVKGAIDLLSTACHPMDVARTAVSVLGANHA------RAQD--SSPEANLEKAMSLLA 128
Query: 229 KAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH 288
P++ A R G + P +L YS NFL+M + G A P + +V IL+
Sbjct: 129 TFPSVVAYDQRRRRGEELIEPREDLDYSANFLWM--TFGEEAA---PEVVEAFNVSMILY 183
Query: 289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTV--ENI 346
AEH N ST AR + S+ D+++A+ GA+GAL GPLHGGANEAV+ EIG E++
Sbjct: 184 AEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGIRKDESL 243
Query: 347 PE-------FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAV 399
E ++ +K+K+ GFGHRVYKN D R ++ + + R ++ +
Sbjct: 244 DEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYN 303
Query: 400 ALEKAALSDEYFVKRKLYPNVDFYSGLIY 428
LE AA+ + +++ PN+D+ +G Y
Sbjct: 304 GLE-AAMEE----AKQIKPNLDYPAGPTY 327
>pdb|2IFC|A Chain A, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|B Chain B, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|C Chain C, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2IFC|D Chain D, The Structure Of The Binary Complex Of Oxalateacetate With
Citrate Synthase From The Thermophilic Archaeon
Thermolasma Acidophilum
pdb|2R9E|A Chain A, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|B Chain B, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|C Chain C, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
pdb|2R9E|D Chain D, The Structure Of The Binary Complex Of Citryl Dethia Coa
And Citrate Synthase From The Thermophilic
Archaeonthermoplasma Acidophilum
Length = 385
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 183/327 (55%), Gaps = 27/327 (8%)
Query: 109 SSICYIDGDEGILRYRGYPIEEL-AESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167
+ + IDG++GILRY GY +E++ A + E+ YL +YGNLP+E +L ++ V +
Sbjct: 19 TRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQELRKYKETVQKGYK 78
Query: 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA-RI 226
+P +++ I+ +P ++ + + ++A++A++ + +K + D+ +A +
Sbjct: 79 IPDFVINAIRQLPRESDAVAMQMAAVAAMA----------ASETKFKWNKDTDRDVAAEM 128
Query: 227 LGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFI 286
+G+ I Y + P LP + SY+E+FL + G +A K ++ I
Sbjct: 129 IGRMSAITVNVYRHIMNMPAELPKPSDSYAESFLNA--AFGRKATKEE---IDAMNTALI 183
Query: 287 LHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENI 346
L+ +HE+ ST+A S+ D+Y+ + A+ AL GPLHGGA EA + +EI +
Sbjct: 184 LYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDEIKDPAMV 243
Query: 347 PE-FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLI----EVAVAL 401
+ F + + N K+++ GFGHRVYK YDPRAK+ + +AE++ S + P + E+A L
Sbjct: 244 EKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSS---KKPEVHKVYEIATKL 300
Query: 402 EKAALSDEYFVKRKLYPNVDFYSGLIY 428
E + + F + +YPN D++SG++Y
Sbjct: 301 EDFGI--KAFGSKGIYPNTDYFSGIVY 325
>pdb|2R26|A Chain A, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|B Chain B, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|C Chain C, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
pdb|2R26|D Chain D, The Structure Of The Ternary Complex Of Carboxymethyl
Coenzyme A And Oxalateacetate With Citrate Synthase From
The Thermophilic Archaeonthermoplasma Acidophilum
Length = 384
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 183/327 (55%), Gaps = 27/327 (8%)
Query: 109 SSICYIDGDEGILRYRGYPIEEL-AESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167
+ + IDG++GILRY GY +E++ A + E+ YL +YGNLP+E +L ++ V +
Sbjct: 18 TRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQELRKYKETVQKGYK 77
Query: 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA-RI 226
+P +++ I+ +P ++ + + ++A++A++ + +K + D+ +A +
Sbjct: 78 IPDFVINAIRQLPRESDAVAMQMAAVAAMA----------ASETKFKWNKDTDRDVAAEM 127
Query: 227 LGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFI 286
+G+ I Y + P LP + SY+E+FL + G +A K ++ I
Sbjct: 128 IGRMSAITVNVYRHIMNMPAELPKPSDSYAESFLNA--AFGRKATKEE---IDAMNTALI 182
Query: 287 LHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENI 346
L+ +HE+ ST+A S+ D+Y+ + A+ AL GPLHGGA EA + +EI +
Sbjct: 183 LYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDEIKDPAMV 242
Query: 347 PE-FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLI----EVAVAL 401
+ F + + N K+++ GFGHRVYK YDPRAK+ + +AE++ S + P + E+A L
Sbjct: 243 EKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSS---KKPEVHKVYEIATKL 299
Query: 402 EKAALSDEYFVKRKLYPNVDFYSGLIY 428
E + + F + +YPN D++SG++Y
Sbjct: 300 EDFGI--KAFGSKGIYPNTDYFSGIVY 324
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 168/320 (52%), Gaps = 17/320 (5%)
Query: 109 SSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAV 168
+++C + L YRGY I +LAE F EVA+LL++G LP+ +L ++ + +
Sbjct: 45 TALCTVGKSGNDLHYRGYDILDLAEHCEFEEVAHLLIHGKLPTRDELNAYKSKLKALRGL 104
Query: 169 PQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILG 228
P + +++A+P +HPM V+ + +SAL P+ +G + ++ + DK +A +
Sbjct: 105 PANVRTVLEALPAASHPMDVMRTGVSALGCTLPEK----EGHTVSGARDIADKLLASLSS 160
Query: 229 KAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILH 288
++ +P +++ S +FL++L KP + + + +L+
Sbjct: 161 ILLYWYHYSHNGERIQPE---TDDDSIGGHFLHLL-----HGEKPTQSWEKAMHISLVLY 212
Query: 289 AEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPE 348
AEHE N ST +R +A +G DVY+A+ GA+GAL GP HGGANE L++ T +
Sbjct: 213 AEHEFNASTFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEA 272
Query: 349 FIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD 408
I K + GFGH VY DPR +VI+++A+++ G + +A LE
Sbjct: 273 DIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETV---- 328
Query: 409 EYFVKRKLYPNVDFYSGLIY 428
+ +K++PN+D++S + Y
Sbjct: 329 -MWETKKMFPNLDWFSAVSY 347
>pdb|3TQG|A Chain A, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
pdb|3TQG|B Chain B, Structure Of The 2-Methylcitrate Synthase (Prpc) From
Coxiella Burnetii
Length = 375
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 172/347 (49%), Gaps = 37/347 (10%)
Query: 89 KNDKGLKLYDPGYLNTAPVRSSICYIDGDEGI-LRYRGYPIEELAESSSFLEVAYLLMYG 147
K KGL+ G + A V G EG L YRGY IE+LA +++F EVAYLL+
Sbjct: 6 KTAKGLRGQSAGETSIATV--------GKEGHGLTYRGYRIEDLAANATFEEVAYLLLKN 57
Query: 148 NLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPAL 207
LP++S+L + + ++P + D ++ +P +HP V + S L P+
Sbjct: 58 KLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPXDVXRTGCSXLGNLEPE----- 112
Query: 208 KGQDIYKSKQVRDKQIARILGKAPTIAAAAY-LRMAGRPPVLPSNNLSYSENFLYMLDSL 266
+ + D+ +A P I Y G+ ++L+ + FL++L L
Sbjct: 113 --NGFENEQNIADRLVAIF----PAIQCYWYHYSHHGKRIDTELDDLTLAGYFLHLL--L 164
Query: 267 GNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLH 326
G +A + + IL+AEHE N ST AAR +++ D+Y+A+ A+ L GPLH
Sbjct: 165 GKKAAQ---XAIDCXNASLILYAEHEFNASTFAARVCSATLSDIYSAVTAAIATLRGPLH 221
Query: 327 GGANEAVLKMLNEIGTVENIPEFIEGVKNR---KRKMSGFGHRVYKNYDPRAKVIRKLAE 383
GGANEA + I + E I G+K + K + GFGH VY+ DPR +I+ A+
Sbjct: 222 GGANEAAXDL---IXLYKTPSEAIAGIKRKLANKELIXGFGHAVYRERDPRNAIIKSWAQ 278
Query: 384 EVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430
++ L +++ A+E DE +KL+PN+DFYS Y +
Sbjct: 279 KLAPNAADGYLFDISDAIENTX-QDE----KKLFPNLDFYSATAYHF 320
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 161/338 (47%), Gaps = 32/338 (9%)
Query: 114 IDGDEGILRYRGYPIEE----LAESSSFLE-----VAYLLMYGNLPSESQLTDWEFAVSQ 164
+D DEGI R+RG+ I E L ++ E + +LL+ G +P+ Q++ ++
Sbjct: 58 LDPDEGI-RFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAK 116
Query: 165 HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA 224
+A+P ++ ++ P + HPM L +A++AL+ A +G + K + +
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAM 176
Query: 225 RILGKAPTIAAAAY--LRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLD 282
++ K P +AA Y L AG + L +S NF ML +P+ ++
Sbjct: 177 DLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLG-------YTDPQFTELMR 229
Query: 283 VLFILHAEHEMNCSTSAARHLASSGV-DVYTALAGAVGALYGPLHGGANEAVLKMLNEI- 340
+ +H++HE ++ HL S + D Y + A A+ L GPLHG AN+ VL L+++
Sbjct: 230 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQ 289
Query: 341 ------GTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 394
+ E + ++I N R + G+GH V + DPR R+ A + DP+
Sbjct: 290 KDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFA---LKHLPSDPM 346
Query: 395 IEVAVALEKAA--LSDEYFVKRKLYPNVDFYSGLIYRY 430
++ L K + E + +PNVD +SG++ +Y
Sbjct: 347 FKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQY 384
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 161/338 (47%), Gaps = 32/338 (9%)
Query: 114 IDGDEGILRYRGYPIEE----LAESSSFLE-----VAYLLMYGNLPSESQLTDWEFAVSQ 164
+D DEGI R+RG+ I E L ++ E + +LL+ G +P+ Q++ ++
Sbjct: 56 LDPDEGI-RFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAK 114
Query: 165 HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA 224
+A+P ++ ++ P + HPM L +A++AL+ A +G + K + +
Sbjct: 115 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAM 174
Query: 225 RILGKAPTIAAAAY--LRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLD 282
++ K P +AA Y L AG + L +S NF ML +P+ ++
Sbjct: 175 DLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLG-------YTDPQFTELMR 227
Query: 283 VLFILHAEHEMNCSTSAARHLASSGV-DVYTALAGAVGALYGPLHGGANEAVLKMLNEI- 340
+ +H++HE ++ HL S + D Y + A A+ L GPLHG AN+ VL L+++
Sbjct: 228 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQ 287
Query: 341 ------GTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 394
+ E + ++I N R + G+GH V + DPR R+ A + DP+
Sbjct: 288 KDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFA---LKHLPSDPM 344
Query: 395 IEVAVALEKAA--LSDEYFVKRKLYPNVDFYSGLIYRY 430
++ L K + E + +PNVD +SG++ +Y
Sbjct: 345 FKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQY 382
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 32/338 (9%)
Query: 114 IDGDEGILRYRGYPIEE----LAESSSFLE-----VAYLLMYGNLPSESQLTDWEFAVSQ 164
+D DEGI R+RGY I E L ++ E + +LL+ G +P+E Q++ ++
Sbjct: 58 LDPDEGI-RFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAK 116
Query: 165 HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA 224
+A+P ++ ++ P + HPM L +A++AL+ A +G K ++ +
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCM 176
Query: 225 RILGKAPTIAAAAY--LRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLD 282
++ K P +AA Y L G + L +S NF ML + + ++
Sbjct: 177 DLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGY-------TDAQFTELMR 229
Query: 283 VLFILHAEHEMNCSTSAARHLASSGV-DVYTALAGAVGALYGPLHGGANEAVLKMLN--- 338
+ +H++HE ++ HL S + D Y + A A+ L GPLHG AN+ VL L
Sbjct: 230 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQ 289
Query: 339 -EIG---TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 394
E+G + E + ++I N R + G+GH V + DPR R+ A + DP+
Sbjct: 290 KEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFA---LKHLPHDPM 346
Query: 395 IEVAVALEKAA--LSDEYFVKRKLYPNVDFYSGLIYRY 430
++ L K + E + +PNVD +SG++ +Y
Sbjct: 347 FKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQY 384
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 160/338 (47%), Gaps = 32/338 (9%)
Query: 114 IDGDEGILRYRGYPIEE----LAESSSFLE-----VAYLLMYGNLPSESQLTDWEFAVSQ 164
+D DEGI R+RGY I E L ++ E + +LL+ G +P+E Q++ ++
Sbjct: 58 LDPDEGI-RFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAK 116
Query: 165 HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA 224
+A+P ++ ++ P + HPM L +A++AL+ A +G K ++ +
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCM 176
Query: 225 RILGKAPTIAAAAY--LRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLD 282
++ K P +AA Y L G + L +S NF ML + + ++
Sbjct: 177 DLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGY-------TDAQFTELMR 229
Query: 283 VLFILHAEHEMNCSTSAARHLASSGV-DVYTALAGAVGALYGPLHGGANEAVLKMLN--- 338
+ +H++HE ++ HL S + D Y + A A+ L GPLHG AN+ VL L
Sbjct: 230 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQ 289
Query: 339 -EIG---TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 394
E+G + E + ++I N R + G+GH V + DPR R+ A + DP+
Sbjct: 290 KEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFA---LKHLPHDPM 346
Query: 395 IEVAVALEKAA--LSDEYFVKRKLYPNVDFYSGLIYRY 430
++ L K + E + +PNVD +SG++ +Y
Sbjct: 347 FKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQY 384
>pdb|5CSC|B Chain B, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 429
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 160/338 (47%), Gaps = 36/338 (10%)
Query: 114 IDGDEGILRYRGYPIEELAE--------SSSFLEVAYLLMYGNLPSESQLTDWEFAVSQH 165
+D DEGI R+RG+ I E + + +LL+ G +P+ +Q++ ++
Sbjct: 58 LDPDEGI-RFRGFSIPECQKLLPKGGGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKR 116
Query: 166 SAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIAR 225
+A+P ++ ++ P + HPM L +A++AL+ A +G K ++ +
Sbjct: 117 AALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMD 176
Query: 226 ILGKAPTIAAAAY--LRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDV 283
++ K P +AA Y L AG + L +S NF ML + + ++ +
Sbjct: 177 LIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLG-------YTDAQFTELMRL 229
Query: 284 LFILHAEHEMNCSTSAARHLASSGV-DVYTALAGAVGALYGPLHGGANEAVLKMLNEI-- 340
+H++HE ++ HL S + D Y + A A+ L GPLHG AN+ VL L ++
Sbjct: 230 YLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQK 289
Query: 341 --GTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLA------EEVFSIVGRD 392
G ++ ++I N R + G+GH V + DPR R+ A + +F +V +
Sbjct: 290 AAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQL 349
Query: 393 PLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430
I V LE+ A ++ +PNVD +SG++ +Y
Sbjct: 350 YKIVPNVLLEQGAAANP-------WPNVDAHSGVLLQY 380
>pdb|1CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With D-
And L-Malate: Mechanistic Implications
pdb|2CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|3CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|4CSC|A Chain A, Structure Of Ternary Complexes Of Citrate Synthase With
D-And L- Malate: Mechanistic Implications
pdb|5CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|6CTS|A Chain A, Proposed Mechanism For The Condensation Reaction Of
Citrate Synthase. 1.9-Angstroms Structure Of The Ternary
Complex With Oxaloacetate And Carboxymethyl Coenzyme A
pdb|5CSC|A Chain A, Structure Of An Open Form Of Chicken Heart Citrate
Synthase At 2.8 Angstroms Resolution
Length = 433
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/342 (26%), Positives = 162/342 (47%), Gaps = 40/342 (11%)
Query: 114 IDGDEGILRYRGYPIEE----LAESSSFLE-----VAYLLMYGNLPSESQLTDWEFAVSQ 164
+D DEGI R+RG+ I E L + E + +LL+ G +P+ +Q++ ++
Sbjct: 58 LDPDEGI-RFRGFSIPECQKLLPKGGXGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAK 116
Query: 165 HSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIA 224
+A+P ++ ++ P + HPM L +A++AL+ A +G K ++ +
Sbjct: 117 RAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAM 176
Query: 225 RILGKAPTIAAAAY--LRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLD 282
++ K P +AA Y L AG + L +S NF ML + + ++
Sbjct: 177 DLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLG-------YTDAQFTELMR 229
Query: 283 VLFILHAEHEMNCSTSAARHLASSGV-DVYTALAGAVGALYGPLHGGANEAVLKMLNEI- 340
+ +H++HE ++ HL S + D Y + A A+ L GPLHG AN+ VL L ++
Sbjct: 230 LYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQ 289
Query: 341 ------GTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLA------EEVFSI 388
G ++ ++I N R + G+GH V + DPR R+ A + +F +
Sbjct: 290 KAXXXAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKL 349
Query: 389 VGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430
V + I V LE+ A ++ +PNVD +SG++ +Y
Sbjct: 350 VAQLYKIVPNVLLEQGAAANP-------WPNVDAHSGVLLQY 384
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 14 RGRLAVLTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQ 73
RGR +LT + ST L E W T SM P G L +LT +G I
Sbjct: 772 RGRRYILTVVVDSTG-----LDENWTTGDDSMKAPRGILDYALT---SSSGANVSISWKL 823
Query: 74 EGTVKATDFKKITTGK-NDKGLKLYDPGYLNTAPVRSSICY 113
G + D++ + G N+ GL G+ +P S +
Sbjct: 824 TGNLGGEDYRDVFRGPLNEGGLFFERQGFHLPSPPLSDFTH 864
>pdb|3W08|A Chain A, Crystal Structure Of Aldoxime Dehydratase
pdb|3W08|B Chain B, Crystal Structure Of Aldoxime Dehydratase
Length = 352
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 51 NLKGSLTVVDERTGK----------RYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPG 100
NL G V+D +G+ R + P+SQ +K T+ ++ G KG ++ G
Sbjct: 151 NLPGVGAVMDSTSGEIEEHGYWGSMRDRFPISQTDWMKPTNELQVVAGDPAKGGRVVIMG 210
Query: 101 YLNTAPVRSSICYIDGD 117
+ N A +RS + D +
Sbjct: 211 HDNIALIRSGQDWADAE 227
>pdb|3L4R|A Chain A, Crystal Structure Of The Dog Lipocalin Allergen Can F 2
And Implications For Cross-Reactivity To The Cat
Allergen Fel D 4
Length = 170
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 23 HLASTESNQGRLIEPWC---TSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKA 79
H + SN+ LI+PW SM GNL G + + + G+ ++ ++ T +
Sbjct: 20 HSVALASNKSDLIKPWGHFRVFIHSMSAKDGNLHGDILI--PQDGQCEKVSLTAFKTATS 77
Query: 80 TDFKKITTGKNDKGLKLYDP 99
F G ND L DP
Sbjct: 78 NKFDLEYWGHNDLYLAEVDP 97
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 233 IAAAAYLRMAGRPPVLPSN----NLSYSE-------NF-----LYMLDSLGNRAYKPNPR 276
+A ++L++ P LPSN NL++++ NF L +LD+ N K P
Sbjct: 8 VADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
Query: 277 LARVLDVLFILHAEHE 292
L ++L +L +L+ +H
Sbjct: 68 LCQILPLLKVLNLQHN 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,805,300
Number of Sequences: 62578
Number of extensions: 539739
Number of successful extensions: 1319
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 37
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)