Query 014050
Match_columns 431
No_of_seqs 259 out of 1475
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 01:22:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02456 citrate synthase 100.0 2E-112 4E-117 885.6 39.2 384 47-430 14-398 (455)
2 PRK05614 gltA type II citrate 100.0 1E-105 2E-110 828.6 39.2 366 54-430 4-374 (419)
3 cd06115 AthCS_per_like Arabido 100.0 7E-106 2E-110 827.1 37.3 356 75-430 3-358 (410)
4 TIGR01798 cit_synth_I citrate 100.0 4E-102 8E-107 800.3 35.1 356 64-430 1-362 (412)
5 cd06116 CaCS_like Chloroflexus 100.0 3E-100 7E-105 780.8 35.0 331 93-430 1-331 (384)
6 cd06107 EcCS_AthCS-per_like Es 100.0 8E-100 2E-104 777.1 35.4 337 93-430 1-338 (382)
7 COG0372 GltA Citrate synthase 100.0 7E-98 2E-102 760.7 34.6 324 91-430 10-335 (390)
8 cd06114 EcCS_like Escherichia 100.0 8.4E-94 1.8E-98 737.1 35.5 350 70-430 2-356 (400)
9 PRK14036 citrate synthase; Pro 100.0 5.8E-93 1.3E-97 726.0 35.2 321 95-430 2-322 (377)
10 PRK12351 methylcitrate synthas 100.0 1.3E-92 2.7E-97 722.9 33.8 315 98-430 9-324 (378)
11 cd06108 Ec2MCS_like Escherichi 100.0 6.3E-92 1.4E-96 714.9 33.9 311 99-430 1-312 (363)
12 cd06105 ScCit1-2_like Saccharo 100.0 5.1E-92 1.1E-96 726.6 31.5 328 92-430 28-378 (427)
13 cd06112 citrate_synt_like_1_1 100.0 3.8E-91 8.3E-96 712.4 34.2 321 97-430 1-322 (373)
14 cd06109 BsCS-I_like Bacillus s 100.0 3E-91 6.5E-96 707.3 33.1 305 99-430 1-307 (349)
15 PRK14035 citrate synthase; Pro 100.0 4.5E-91 9.7E-96 710.4 34.6 314 97-430 3-317 (371)
16 cd06117 Ec2MCS_like_1 Subgroup 100.0 6.2E-91 1.3E-95 708.6 33.9 314 99-430 1-315 (366)
17 cd06106 ScCit3_like Saccharomy 100.0 3.5E-91 7.7E-96 720.6 31.8 323 97-430 36-382 (428)
18 PRK14037 citrate synthase; Pro 100.0 1.2E-90 2.7E-95 708.8 34.2 318 96-430 3-322 (377)
19 cd06103 ScCS-like Saccharomyce 100.0 2.7E-90 5.8E-95 714.2 31.9 323 97-430 36-380 (426)
20 PRK14034 citrate synthase; Pro 100.0 5.9E-89 1.3E-93 695.0 34.1 316 95-430 1-317 (372)
21 PRK09569 type I citrate syntha 100.0 2.3E-89 5.1E-94 708.6 31.3 317 97-430 38-381 (437)
22 PRK14032 citrate synthase; Pro 100.0 3.6E-89 7.8E-94 710.0 30.4 342 65-430 8-393 (447)
23 PRK12350 citrate synthase 2; P 100.0 7.5E-89 1.6E-93 688.8 28.8 298 97-430 1-304 (353)
24 PRK12349 citrate synthase 3; P 100.0 2E-87 4.4E-92 684.1 34.1 317 96-430 4-321 (369)
25 TIGR01793 cit_synth_euk citrat 100.0 1.6E-87 3.5E-92 692.6 30.9 322 97-430 39-381 (427)
26 PF00285 Citrate_synt: Citrate 100.0 1.6E-87 3.5E-92 683.1 29.0 318 100-430 1-319 (356)
27 cd06111 DsCS_like Cold-active 100.0 4.8E-86 1E-90 672.6 34.4 314 99-430 1-314 (362)
28 cd06118 citrate_synt_like_1 Ci 100.0 9.9E-86 2.2E-90 670.3 35.0 317 99-430 1-317 (358)
29 PRK14033 citrate synthase; Pro 100.0 1.5E-85 3.2E-90 671.4 34.3 316 97-430 9-324 (375)
30 TIGR01800 cit_synth_II 2-methy 100.0 6.9E-85 1.5E-89 665.8 34.8 314 99-430 1-314 (368)
31 cd06113 citrate_synt_like_1_2 100.0 2E-84 4.4E-89 668.7 32.4 315 103-430 10-363 (406)
32 cd06110 BSuCS-II_like Bacillus 100.0 6.9E-84 1.5E-88 656.2 34.8 314 99-430 1-314 (356)
33 KOG2617 Citrate synthase [Ener 100.0 4.7E-77 1E-81 595.0 18.0 390 20-430 2-400 (458)
34 cd06101 citrate_synt Citrate s 100.0 9E-70 1.9E-74 532.6 23.8 222 99-430 1-224 (265)
35 cd06102 citrate_synt_like_2 Ci 100.0 1E-58 2.2E-63 457.0 24.3 225 102-430 16-240 (282)
36 cd06099 CS_ACL-C_CCL Citrate s 100.0 8.5E-51 1.8E-55 387.1 17.8 169 254-429 1-171 (213)
37 PRK06224 citrate synthase; Pro 100.0 4.5E-49 9.8E-54 386.1 18.8 194 104-429 6-207 (263)
38 PLN02522 ATP citrate (pro-S)-l 100.0 3.7E-43 8.1E-48 375.2 20.6 192 105-429 351-547 (608)
39 cd06100 CCL_ACL-C Citryl-CoA l 100.0 8.8E-43 1.9E-47 334.9 16.9 166 252-429 10-182 (227)
40 KOG1254 ATP-citrate lyase [Ene 98.8 8.5E-09 1.8E-13 107.2 6.2 146 275-428 389-538 (600)
41 cd06100 CCL_ACL-C Citryl-CoA l 98.2 2.6E-05 5.6E-10 75.4 14.2 71 125-197 1-77 (227)
42 cd06099 CS_ACL-C_CCL Citrate s 84.6 26 0.00056 33.6 13.4 58 136-196 1-63 (213)
43 KOG2617 Citrate synthase [Ener 71.6 2.2 4.7E-05 44.8 1.7 56 78-134 38-96 (458)
44 PF09350 DUF1992: Domain of un 68.8 17 0.00037 29.1 5.9 59 346-404 2-64 (71)
45 cd06111 DsCS_like Cold-active 66.8 96 0.0021 32.3 12.6 62 134-197 146-211 (362)
46 PRK14033 citrate synthase; Pro 61.1 1.4E+02 0.003 31.4 12.5 62 134-197 156-221 (375)
47 PRK14034 citrate synthase; Pro 60.0 1.5E+02 0.0033 31.0 12.6 62 134-197 149-214 (372)
48 PRK10203 hypothetical protein; 59.7 32 0.00068 30.6 6.4 28 346-373 8-37 (122)
49 PRK12349 citrate synthase 3; P 58.6 1.6E+02 0.0034 30.9 12.4 60 135-197 153-217 (369)
50 PRK14037 citrate synthase; Pro 57.3 27 0.00058 36.6 6.5 71 125-197 140-214 (377)
51 PTZ00096 40S ribosomal protein 54.5 10 0.00023 34.4 2.6 24 120-144 14-37 (143)
52 PRK04038 rps19p 30S ribosomal 52.0 12 0.00025 33.8 2.4 24 120-144 6-29 (134)
53 PLN03085 nucleobase:cation sym 51.7 47 0.001 32.3 6.6 60 346-405 93-155 (221)
54 TIGR01800 cit_synth_II 2-methy 51.7 2.7E+02 0.0058 29.1 12.8 62 134-197 146-211 (368)
55 PRK14036 citrate synthase; Pro 50.7 2.1E+02 0.0045 30.1 11.8 62 134-197 151-216 (377)
56 TIGR01025 rpsS_arch ribosomal 45.0 17 0.00037 32.8 2.3 24 120-144 4-27 (135)
57 PRK14035 citrate synthase; Pro 43.3 47 0.001 34.8 5.7 62 134-197 149-214 (371)
58 cd06112 citrate_synt_like_1_1 43.1 52 0.0011 34.4 6.0 73 123-197 139-215 (373)
59 PRK14032 citrate synthase; Pro 35.9 1.2E+02 0.0027 32.5 7.6 64 132-197 201-270 (447)
60 PF13946 DUF4214: Domain of un 33.7 88 0.0019 24.9 4.7 32 135-166 22-53 (75)
61 PF00285 Citrate_synt: Citrate 32.8 5.7E+02 0.012 26.4 13.3 72 124-197 136-213 (356)
62 PRK12351 methylcitrate synthas 32.1 6.2E+02 0.014 26.6 13.7 61 135-197 157-221 (378)
63 PF07583 PSCyt2: Protein of un 30.8 42 0.00092 32.3 2.8 36 125-160 15-50 (208)
64 KOG1182 Branched chain alpha-k 29.8 33 0.00071 35.4 1.9 19 117-135 146-164 (432)
65 TIGR00006 S-adenosyl-methyltra 29.4 2.8E+02 0.006 28.4 8.5 70 124-193 130-208 (305)
66 KOG4183 RNA polymerase I 49 kD 27.8 4.6E+02 0.0099 27.6 9.6 36 103-146 195-232 (413)
67 PRK00050 16S rRNA m(4)C1402 me 27.7 2.8E+02 0.0061 28.1 8.2 67 124-193 128-204 (296)
68 cd06113 citrate_synt_like_1_2 27.1 1.9E+02 0.004 30.8 7.0 64 132-197 171-240 (406)
69 cd06108 Ec2MCS_like Escherichi 25.8 1.5E+02 0.0031 31.1 5.9 71 125-197 135-209 (363)
70 PF11591 2Fe-2S_Ferredox: Ferr 25.1 32 0.0007 23.2 0.6 10 296-305 7-16 (34)
71 TIGR03687 pupylate_cterm ubiqu 23.6 51 0.0011 22.6 1.3 27 332-358 4-32 (33)
72 cd06118 citrate_synt_like_1 Ci 23.3 1.9E+02 0.004 30.1 6.1 61 135-198 147-212 (358)
73 KOG0416 Ubiquitin-protein liga 21.1 34 0.00073 32.1 0.1 17 411-427 68-84 (189)
No 1
>PLN02456 citrate synthase
Probab=100.00 E-value=1.7e-112 Score=885.55 Aligned_cols=384 Identities=67% Similarity=1.084 Sum_probs=368.9
Q ss_pred CCCCCCCceEEEEeccCCeEEEeeeeeCCCccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccC
Q 014050 47 PPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGY 126 (431)
Q Consensus 47 ~~~~~~~~~l~~~~~r~g~~~~~pi~~~~~~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy 126 (431)
.++++++++|||+||||||+|++||.+.++++++||++|+++..++|+++|||||+||++|+|+||+|||++|+|+||||
T Consensus 14 ~~~~~~~~~~~~~~~r~g~~~~~~i~~~~~~~~~~~~~l~~~~~~~g~~~~d~Gl~~~~~~~s~IS~iDg~~G~L~YRGy 93 (455)
T PLN02456 14 AAPGGGSGSLTIVDNRTGKDYESPLSELGPVQAERLKKIKAGKDDLGLKTVDPGYRNTAPVLSEISLIDGDEGILRFRGY 93 (455)
T ss_pred ccCCCCCCcEEEEECCCCcEEEEehhccCCcccchhhhcccCcCccCCEecCcccCCceeeeeeceEEeCCCCEEEECCc
Confidence 45677788999999999999999999548899999999987777899999999999999999999999999999999999
Q ss_pred CHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCcc
Q 014050 127 PIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPA 206 (431)
Q Consensus 127 ~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~ 206 (431)
||+||+++++||||+||||+|+|||++|++.|+.+|.+++.+|+.+.+++++||+++|||.+|++++++|++|+++.++.
T Consensus 94 ~I~dLa~~~~feevayLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~ 173 (455)
T PLN02456 94 PIEELAEKSPFEEVAYLLLYGNLPTKEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAY 173 (455)
T ss_pred cHHHHHhcCCHHHHHHHHHcCcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHhCCCcCCcHHHHHHHHHhhhhcCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 014050 207 LKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFI 286 (431)
Q Consensus 207 ~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LI 286 (431)
..|.+++.+++...++++|||||+|+|+|++||++.|+++++|++++||++|||+||++.+...++|+|..+++||++||
T Consensus 174 ~~g~~~~~~~~~~~~~a~rliAk~p~iaA~~yr~~~g~~~~~P~~~ls~a~Nfl~Ml~~~~~~~~~p~~~~~~~l~~~Li 253 (455)
T PLN02456 174 LRGQHKYKSWEVRDEDIVRLIGKLPTLAAAIYRRMYGRGPVIPDNSLDYAENFLYMLGSLGDRSYKPDPRLARLLDLYFI 253 (455)
T ss_pred hcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHe
Confidence 77777767777888999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred HhhccCCCchhhhHHHhh-ccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhhcCCcccccCC
Q 014050 287 LHAEHEMNCSTSAARHLA-SSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGH 365 (431)
Q Consensus 287 LhADHeln~ST~aaRvva-St~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGH 365 (431)
||||||+|||||++|+++ ||++|+|+||+|||+|||||+||||||+|++||++|++++++++||++++++|++||||||
T Consensus 254 LhADHe~n~ST~aar~~a~St~ad~ysavaAgi~aL~GPlHGGA~e~v~~~l~ei~~~~~v~~~v~~~l~~~~~l~GFGH 333 (455)
T PLN02456 254 IHADHEGGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPLHGGANEAVLKMLKEIGTVENIPEYVEGVKNSKKVLPGFGH 333 (455)
T ss_pred eeccCCCCchhHHHHHHHhccCCCHHHHHHHHhhhcCCCcccChHHHHHHHHHHhCCHHHHHHHHHHHHhCCCcccCCCC
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050 366 RVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 366 rVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
||||++||||++|+++|+++.+..+.+|+++++.+||+++..|+||+.|+||||||||||+||++
T Consensus 334 rvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~ia~~le~~~~~~~~~~~r~l~pNVDfysg~l~~~ 398 (455)
T PLN02456 334 RVYKNYDPRAKCIREFALEVFKHVGDDPLFKVASALEEVALLDEYFKVRKLYPNVDFYSGVLLRA 398 (455)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999999999877788999999999999999999999999999999999999974
No 2
>PRK05614 gltA type II citrate synthase; Reviewed
Probab=100.00 E-value=1e-105 Score=828.57 Aligned_cols=366 Identities=49% Similarity=0.830 Sum_probs=344.3
Q ss_pred ceEEEEeccCCeEEEeeeeeCCC--ccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHH
Q 014050 54 GSLTVVDERTGKRYQIPVSQEGT--VKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEEL 131 (431)
Q Consensus 54 ~~l~~~~~r~g~~~~~pi~~~~~--~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eL 131 (431)
.++++++++|||+|++||.. || ++++||++|++ ++|+++|||||.||++|+|+||+|||++|+|+||||+|+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~---~~~~~~~~~Gl~~~~~~~S~Is~iDg~~G~L~YRGy~i~dL 79 (419)
T PRK05614 4 KKATLTLNGGEASVELPILK-GTLGPDVIDIRKLYG---STGYFTYDPGFTSTASCESKITYIDGDKGILLYRGYPIEQL 79 (419)
T ss_pred ceEEEEECCCCcEEEeeeec-CCCCCcceehHhhhh---ccCCcccCCccCCceeeeeeceeEeCCCCEEEECCccHHHH
Confidence 35778889999999999999 77 67999999974 67999999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCC
Q 014050 132 AESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQD 211 (431)
Q Consensus 132 a~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~ 211 (431)
+++++||||+||||+|+||+++|++.|..+|.+++.+|+.+.++++.||+++|||.+|++++++|++++++...
T Consensus 80 a~~~~feEva~LLl~G~LP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~------ 153 (419)
T PRK05614 80 AEKSDFLEVCYLLLYGELPTAEQKAEFDTTVTRHTMVHEQLKRFFRGFRRDAHPMAVLCGVVGALSAFYHDSLD------ 153 (419)
T ss_pred HhcCCHHHHHHHHHcCcCCCHHHHHHHHHhHhhccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCccccC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876521
Q ss_pred cccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 014050 212 IYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEH 291 (431)
Q Consensus 212 ~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADH 291 (431)
. .+.+...++++||+||+|+|+|++||++.|+++++|++++||++|||+||++.+...++|+|..+++||++|||||||
T Consensus 154 ~-~~~~~~~~~a~rlia~~p~i~A~~~r~~~g~~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiL~ADH 232 (419)
T PRK05614 154 I-NDPEHREIAAIRLIAKMPTLAAMAYKYSIGQPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADH 232 (419)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccCHHHHHHHHHhCCCCccCCCCHHHHHHHHHHHhhhccC
Confidence 0 233444677899999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhhc--CCcccccCCCCCC
Q 014050 292 EMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNR--KRKMSGFGHRVYK 369 (431)
Q Consensus 292 eln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~~--~~rL~GFGHrVYk 369 (431)
|+||||||+|+++||++|+|+||+|||+|||||+||||||+|++||++|++++++++||++++++ |++||||||||||
T Consensus 233 ~~n~STfa~RvvaSt~adlysav~agi~aL~GplHGGA~e~v~~~l~~i~~~~~~~~~i~~~~~~~~~~~i~GFGHrvyk 312 (419)
T PRK05614 233 EQNASTSTVRLAGSSGANPFACIAAGIAALWGPAHGGANEAVLKMLEEIGSVDNIPEFIARAKDKNDGFRLMGFGHRVYK 312 (419)
T ss_pred CCCcchHHHhhhhccCCCHHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCchhHHHHHHHHHhccCCccccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999764 4599999999999
Q ss_pred CCCchHHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050 370 NYDPRAKVIRKLAEEVFSIVG-RDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 370 ~~DPRA~iL~~~a~el~~~~g-~~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
++||||++|+++|+++.+..| .++++++++++|+++.+++||++|+||||||||||+||+.
T Consensus 313 ~~DPRa~~l~~~a~~l~~~~~~~~~~~~ia~~ie~~~~~~~~~~~r~l~pNvD~~s~~l~~~ 374 (419)
T PRK05614 313 NYDPRAKIMRETCHEVLKELGLNDPLLEVAMELEEIALNDEYFIERKLYPNVDFYSGIILKA 374 (419)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccCCCCcChHHHHHHHHHH
Confidence 999999999999999988888 6899999999999999999999999999999999999974
No 3
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=100.00 E-value=7.3e-106 Score=827.14 Aligned_cols=356 Identities=85% Similarity=1.348 Sum_probs=342.5
Q ss_pred CCccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHH
Q 014050 75 GTVKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQ 154 (431)
Q Consensus 75 ~~~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~q 154 (431)
|+++++||++|++..+++|+++|||||+||++|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|
T Consensus 3 ~~~~~~d~~~~~~~~~~~g~~~~~~Gl~~~~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~~feEv~~LLl~G~LPt~~e 82 (410)
T cd06115 3 GTVKATDFKKIKAGKDDKGLRLYDPGYLNTAVVRSKISYIDGDKGILRYRGYPIEELAEKSTFLEVAYLLIYGNLPTKSQ 82 (410)
T ss_pred CCcceeeHHHhcCCcccCCCcccCCccCCceEEEeeCeeEeCCCCeEEECCccHHHHHhcCCHHHHHHHHHcCCCcCHHH
Confidence 78999999999987789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHH
Q 014050 155 LTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIA 234 (431)
Q Consensus 155 l~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptia 234 (431)
++.|+++|.+++.+|+.+.++++.||+++|||.+|++++++|++|+++.+++..|.++|++.+...++++||+||+|+|+
T Consensus 83 l~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~rliA~~p~i~ 162 (410)
T cd06115 83 LSDWEFAVSQHTAVPTGVLDMIKSFPHDAHPMGMLVSAISALSAFHPEANPALAGQDIYKNKQVRDKQIVRILGKAPTIA 162 (410)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhccCccccccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887666666776666667788899999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHH
Q 014050 235 AAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTAL 314 (431)
Q Consensus 235 A~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaav 314 (431)
|++||++.|+++++|+++++|++|||+||++.+.+.++|+|..+++||++||||||||+|+||||+|++|||++|+|+||
T Consensus 163 A~~~r~~~g~~~~~p~~~ls~a~NFl~Ml~g~~~~~~~p~~~~~~~l~~~liL~ADH~~naSTfaarv~aSt~ad~ysav 242 (410)
T cd06115 163 AAAYRRRAGRPPNLPSQDLSYTENFLYMLDSLGERKYKPNPRLARALDILFILHAEHEMNCSTAAVRHLASSGVDVYTAV 242 (410)
T ss_pred HHHHHHHcCCCCcCCCCCCCHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHhhccCCCchHHHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcH
Q 014050 315 AGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 394 (431)
Q Consensus 315 aAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l 394 (431)
+|||+|||||+||||||+|++||++|++++++++||++.+++|+|||||||||||++||||++|+++++++.+..|.+++
T Consensus 243 ~agi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~~v~~~~~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~~~~~~~~~ 322 (410)
T cd06115 243 AGAVGALYGPLHGGANEAVLRMLAEIGTVENIPAFIEGVKNRKRKLSGFGHRVYKNYDPRAKIIKKLADEVFEIVGKDPL 322 (410)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHhCChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777777899
Q ss_pred HHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050 395 IEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 395 ~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
+++|+++|+++.+++||+.|+||||||||||+||++
T Consensus 323 ~~~a~~~e~~~~~~~~~~~k~l~pNVD~ysa~l~~~ 358 (410)
T cd06115 323 IEIAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRA 358 (410)
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999974
No 4
>TIGR01798 cit_synth_I citrate synthase I (hexameric type). This model describes one of several distinct but closely homologous classes of citrate synthase, the protein that brings carbon (from acetyl-CoA) into the TCA cycle. This form, class I, is known to be hexameric and allosterically inhibited by NADH in Escherichia coli, Acinetobacter anitratum, Azotobacter vinelandii, Pseudomonas aeruginosa, etc. In most species with a class I citrate synthase, a dimeric class II isozyme is found. The class II enzyme may act primarily on propionyl-CoA to make 2-methylcitrate or be bifunctional, may be found among propionate utilization enzymes, and may be constitutive or induced by propionate. Some members of this model group as class I enzymes, and may be hexameric, but have shown regulatory properties more like class II enzymes.
Probab=100.00 E-value=3.5e-102 Score=800.26 Aligned_cols=356 Identities=49% Similarity=0.838 Sum_probs=335.7
Q ss_pred CeEEEeeeeeCCC--ccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHH
Q 014050 64 GKRYQIPVSQEGT--VKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVA 141 (431)
Q Consensus 64 g~~~~~pi~~~~~--~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva 141 (431)
||+|++||.. +| ++++||++++. ++|+++|||||.||++|+|+||+|||++|+|+||||+|+||+++++||||+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~GL~~v~~~~s~Is~iDg~~G~L~YRGy~I~dL~~~~~feEv~ 76 (412)
T TIGR01798 1 NKSVELPIYS-GTLGPDVIDIRKLYK---QTGLFTFDPGFTSTASCESKITFIDGDKGILLYRGYPIDQLATKSDYLEVC 76 (412)
T ss_pred CCeeecceec-CcCCCcchhhHhhhh---cCCCCcCCCCCCCceeEeeeCeeEeCCCCEEEECCccHHHHhccCCHHHHH
Confidence 6899999999 87 67999999974 678889999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHH
Q 014050 142 YLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDK 221 (431)
Q Consensus 142 ~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~ 221 (431)
||||+|+|||++|++.|+.+|.+++.+|+.+.+++++||+++|||.+|++++++|++|+++... . .+.+...+
T Consensus 77 yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~------~-~~~~~~~~ 149 (412)
T TIGR01798 77 YLLLNGELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMAVMVGVVGALSAFYHDSLD------I-NDPRHREI 149 (412)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCcCChHHHHHHHHHHHhhhCccccc------c-CCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876421 1 23344467
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHH
Q 014050 222 QIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAAR 301 (431)
Q Consensus 222 ~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaR 301 (431)
+++||+||+|+|+|++||++.|+++++|++++||++|||+||++.+.+.++|+|..+++||++||||||||+|+||||+|
T Consensus 150 ~a~~liA~~p~i~A~~yr~~~g~~~i~p~~~ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~STfaaR 229 (412)
T TIGR01798 150 AAIRLIAKIPTLAAMSYKYSIGQPFVYPRNDLSYAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHEQNASTSTVR 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHHHhhcCCCCcccceee
Confidence 88999999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhhcC--CcccccCCCCCCCCCchHHHHH
Q 014050 302 HLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRK--RKMSGFGHRVYKNYDPRAKVIR 379 (431)
Q Consensus 302 vvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~~~--~rL~GFGHrVYk~~DPRA~iL~ 379 (431)
+++||++|+|+||+|||+||+||+||||||+|++||++|++++++++||++.++++ ++||||||||||++||||++|+
T Consensus 230 v~aSt~ad~ysav~agi~aL~GplHGGA~e~v~~ml~ei~~~~~~~~~v~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~ 309 (412)
T TIGR01798 230 LAGSSGANPFACIAAGIAALWGPAHGGANEAALKMLEEIGSVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYDPRAKVMR 309 (412)
T ss_pred eeecCCCCHHHHHHHHhhhccCccccchHHHHHHHHHHhCChhHHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999998887 4999999999999999999999
Q ss_pred HHHHHHHHhhCC--CcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050 380 KLAEEVFSIVGR--DPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 380 ~~a~el~~~~g~--~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
++|+++.+..|. ++++++++++|+++.+++||.+|+||||||||||+||+.
T Consensus 310 ~~a~~l~~~~g~~~~~~~~~a~~~e~~~~~~~~~~~k~l~pNvD~~sa~l~~~ 362 (412)
T TIGR01798 310 ETCHEVLKELGLHDDPLFKLAMELEKIALNDPYFIERKLYPNVDFYSGIILKA 362 (412)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHHHhhhhhccCCCCcChHHHHHHHHHH
Confidence 999999887773 689999999999999999999999999999999999974
No 5
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=3e-100 Score=780.77 Aligned_cols=331 Identities=60% Similarity=1.030 Sum_probs=315.5
Q ss_pred cceeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHH
Q 014050 93 GLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGI 172 (431)
Q Consensus 93 g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v 172 (431)
|+++|||||+||++|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|.+++.+|+.+
T Consensus 1 g~~~~~~Gl~~v~~~~t~Is~iDg~~G~L~YRGy~I~dL~~~~~feEv~yLLl~G~lPt~~el~~f~~~L~~~~~lp~~v 80 (384)
T cd06116 1 GLMTYDPAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQSSYLEVAYLLLHGELPTKERLAQWVYDITRHTMTHENL 80 (384)
T ss_pred CCCCCCCCcCCeeEEeeEeeeEeCCCCeEEECCccHHHHhccCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCCHHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCC
Q 014050 173 LDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNN 252 (431)
Q Consensus 173 ~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~ 252 (431)
.++++.||+++|||.+|++++++|++++++... + .+.+...++++||+||+|+|+|++||++.|+++++|+++
T Consensus 81 ~~~l~~~p~~~hPM~~L~~~vs~l~~~~~~~~~------~-~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~~~~~p~~~ 153 (384)
T cd06116 81 KKFMDGFRYDAHPMGILISSVAALSTFYPEAKN------I-GDEEQRNKQIIRLIGKMPTIAAFAYRHRLGLPYVLPDND 153 (384)
T ss_pred HHHHHhcCcCCCcHHHHHHHHHhhhhcCccccc------c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 999999999999999999999999999887521 1 233445677899999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHH
Q 014050 253 LSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEA 332 (431)
Q Consensus 253 lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAnea 332 (431)
+||++|||+||++.+.+.|+|+|..+++||++||||||||+|+||||+|++|||++|+|+||+|||+||+||+||||||+
T Consensus 154 ls~a~Nfl~Ml~g~~~~~~~p~~~~~~~l~~~LiL~ADH~~n~STfaarv~aSt~ad~ysav~agi~aL~GplHGGA~e~ 233 (384)
T cd06116 154 LSYTGNFLSMLFKMTEPKYEPNPVLAKALDVLFILHADHEQNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEA 233 (384)
T ss_pred CCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhhhccCCCCchhHHHhhhhccCCCHHHHHHHHHHhccCCcccchHHH
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccc
Q 014050 333 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFV 412 (431)
Q Consensus 333 vl~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~ 412 (431)
|++||++|++++++++||++.+++|++||||||||||++||||++|+++++++.+..+.++++++++++|+++.+++||.
T Consensus 234 v~~~l~ei~~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~ia~~~e~~~~~~~~~~ 313 (384)
T cd06116 234 VLRMLQQIGSPKNIPDFIETVKQGKERLMGFGHRVYKNYDPRARIIKKIADEVFEATGRNPLLDIAVELEKIALEDEYFI 313 (384)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhcCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999777677899999999999999999999
Q ss_pred cCCCcccccchHhhhccc
Q 014050 413 KRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 413 ~r~LyPNVDfysg~i~~~ 430 (431)
.|+||||||||||+||++
T Consensus 314 ~k~l~pNvD~ysa~l~~~ 331 (384)
T cd06116 314 SRKLYPNVDFYSGLIYQA 331 (384)
T ss_pred ccCCCCChHHHHHHHHHH
Confidence 999999999999999964
No 6
>cd06107 EcCS_AthCS-per_like Escherichia coli (Ec) citrate synthase (CS) gltA and Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of ide
Probab=100.00 E-value=8.2e-100 Score=777.14 Aligned_cols=337 Identities=64% Similarity=1.051 Sum_probs=318.8
Q ss_pred cceeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHH
Q 014050 93 GLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGI 172 (431)
Q Consensus 93 g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v 172 (431)
|+++|||||+||++|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|.+++.+|+.+
T Consensus 1 g~~~~~~GL~~v~~~~t~Is~iDg~~G~L~YRGy~I~dLa~~~~feev~yLLl~G~LPt~~el~~f~~~L~~~~~lp~~v 80 (382)
T cd06107 1 GLRVYDPGYLNTAVCESSITYIDGDKGILLYRGYPIEQLAESSTYEEVAYLLLWGELPTQEQYDEFQRRLSEHMMVPESV 80 (382)
T ss_pred CCCCCCCCcCCeeeEeeeCeeEeCCCCeEEECCccHHHHHhcCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHccCCCHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCccc-chhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCC
Q 014050 173 LDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYK-SKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSN 251 (431)
Q Consensus 173 ~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~-~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~ 251 (431)
.++++.||+++|||.+|++++++|++++++..+...| +.|. +.+...++++||+||+|+|+|++||++.|+++++|++
T Consensus 81 ~~~i~~~p~~~hPM~~L~~~vs~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~liA~~p~i~A~~yr~~~g~~~~~P~~ 159 (382)
T cd06107 81 HRLIQTFPRDAHPMGILCAGLSALSAFYPEAIPAHTG-DLYQNNPEVRDKQIIRTLAKMPTIAAAAYCHRIGRPFVYPRA 159 (382)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHhhcccCccccchhhc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999876543334 3443 4455667889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHH
Q 014050 252 NLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANE 331 (431)
Q Consensus 252 ~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAne 331 (431)
++||++|||+||++.+...++|+|+.+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+||||||
T Consensus 160 ~ls~a~NFL~Ml~g~~~~~~~p~~~~~~~l~~~LiL~aDHg~n~ST~aaRv~aSt~ad~~s~v~aai~al~GplHGGA~e 239 (382)
T cd06107 160 NLSYIENFLYMMGYVDQEPYEPNPRLARALDRLWILHADHEMNCSTSAARHTGSSLADPISCMAAAIAALYGPLHGGANE 239 (382)
T ss_pred CCCHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcccCCcchhHHHHHHHhcCCcHHHHHHHHHhhccCCcccchHH
Confidence 99999999999998766677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCccc
Q 014050 332 AVLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYF 411 (431)
Q Consensus 332 avl~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf 411 (431)
+|++||++|++++++++||++.+++|+|||||||||||.+||||++|+++++++.+..+.+++++++++||+++.+++||
T Consensus 240 ~v~~~l~ei~~~~~~~~~v~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~~~~~ 319 (382)
T cd06107 240 AALKMLREIGTPENVPAFIERVKNGKRRLMGFGHRVYKNYDPRAKVIREILHEVLTEVEKDPLLKVAMELERIALEDEYF 319 (382)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhcCCCcCCCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999977667789999999999999999999
Q ss_pred ccCCCcccccchHhhhccc
Q 014050 412 VKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 412 ~~r~LyPNVDfysg~i~~~ 430 (431)
+.|+||||||||||+||+.
T Consensus 320 ~~k~l~pNvD~~sa~~~~~ 338 (382)
T cd06107 320 VSRKLYPNVDFYSGFIYKA 338 (382)
T ss_pred ccCCCCcChHHHHHHHHHH
Confidence 9999999999999999964
No 7
>COG0372 GltA Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=7e-98 Score=760.67 Aligned_cols=324 Identities=52% Similarity=0.862 Sum_probs=307.3
Q ss_pred CccceeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCH
Q 014050 91 DKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQ 170 (431)
Q Consensus 91 ~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe 170 (431)
+++..+|+|||.++.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+||+.+|++.|..++..++.+|+
T Consensus 10 ~~~~~~~~~Gl~~v~~~~t~is~id~~~g~L~yrGy~i~dla~~~~feev~~LLl~G~lPt~~el~~~~~~~~~~~~~~~ 89 (390)
T COG0372 10 DVGRFTYDPGLEGVAACETAISYIDGDGGILRYRGYDIEDLAEKSSFEEVAYLLLYGELPTKAELAAFFAKLAARRTLPE 89 (390)
T ss_pred CccccccCCcccccceeeeeeeEecCCCceEEECCccHHHHHhhcCHHHHHHHHHcCcCCChHHHHHHHHHHHHhcCccH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCC
Q 014050 171 GILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPS 250 (431)
Q Consensus 171 ~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~ 250 (431)
.+.+++..+|++.|||++|++++++|++++++... .+. ....+.|++|++|+|+|++||.+.|.+++.|+
T Consensus 90 ~~~~~~~~~p~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~--~~~~a~rlia~~pti~a~~yr~~~g~~~i~p~ 159 (390)
T COG0372 90 QVIRLLESLPRDAHPMAVLRTAVSALSAFYPDKLD--------LND--RREAALRLIAKLPTIAAAVYRYSRGEPPIAPD 159 (390)
T ss_pred HHHHHHHhCCCCcCcHHHHHHHHHHhccccccccc--------cch--hHHHHHHHHHHhhHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999877531 111 45668999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccCh
Q 014050 251 NNLSYSENFLYMLDSLGNRAYKPN-PRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGA 329 (431)
Q Consensus 251 ~~lsy~~NfL~ml~~~~~~~~~~~-p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGA 329 (431)
++++|++|||+||++. .|+ |..+++||++||||||||+|+||||+||+|||++|+|+||+|||+|||||+||||
T Consensus 160 ~~~s~a~nfL~ml~g~-----~p~~~~~~~a~d~~LiL~ADHe~NASTftarvvaST~sd~ys~i~agi~aL~GPlHGGA 234 (390)
T COG0372 160 PDLSYAENFLYMLFGE-----PPSPPVEARAMDRALILHADHELNASTFTARVVASTGSDLYACIAAGIGALKGPLHGGA 234 (390)
T ss_pred CCccHHHHHHHHHcCC-----CCCcHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCcHHHHHHHHHHHcCCCccCCh
Confidence 9999999999999973 566 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC-CHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC
Q 014050 330 NEAVLKMLNEIGTVE-NIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD 408 (431)
Q Consensus 330 neavl~mL~eI~~~~-~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d 408 (431)
||+|++||++|++.. ++++||++.+++|+|||||||||||++||||++||++|+++.++.|+++++++|.+||++++++
T Consensus 235 ne~v~~ml~ei~~~~~~~~~~v~~~l~~~~~imGFGHRVYk~~DPRa~~lk~~a~~l~~~~g~~~~~~~a~~~e~~~l~~ 314 (390)
T COG0372 235 NEAVMKMLEEIGSSGESAEAYVRKALDRKERIMGFGHRVYKNYDPRAKVLKELAEKLGKELGDLKLYEIAEELEEIALED 314 (390)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHHhCCCCcCCCCCCCCCCCCchHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHh
Confidence 999999999999775 4999999999999999999999999999999999999999998888779999999999999999
Q ss_pred cccccCCCcccccchHhhhccc
Q 014050 409 EYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 409 ~yf~~r~LyPNVDfysg~i~~~ 430 (431)
.|| +||||||||||||++|++
T Consensus 315 ~~~-~k~l~PNvDfysg~v~~~ 335 (390)
T COG0372 315 LGF-EKKLYPNVDFYSGIVYRA 335 (390)
T ss_pred hhc-ccCCCCccccchHHHHHH
Confidence 999 999999999999999974
No 8
>cd06114 EcCS_like Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some typ
Probab=100.00 E-value=8.4e-94 Score=737.09 Aligned_cols=350 Identities=49% Similarity=0.892 Sum_probs=324.1
Q ss_pred eeeeCCC--ccceecccccccCCCccceeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhC
Q 014050 70 PVSQEGT--VKATDFKKITTGKNDKGLKLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYG 147 (431)
Q Consensus 70 pi~~~~~--~~~~d~~~l~~~~~~~g~~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G 147 (431)
|+.. ++ ++.+++.+++. ++|++.|||||+||++++|+||+|||++|+|+||||+|+||+++++||||+||||+|
T Consensus 2 ~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~GL~gv~v~~S~Is~idg~~G~L~YRGy~i~dLa~~~sfEEva~LL~~G 77 (400)
T cd06114 2 PVLE-GTEGEKVIDISSLRK---KTGVFTYDPGFMNTASCESAITYIDGEKGILRYRGYPIEQLAEKSSFLEVCYLLLYG 77 (400)
T ss_pred Cccc-CCCCCcceehHhhhh---hcCCccCCCCCCCceeEeeeCeEEeCCCCEEEECCccHHHHHhcCCHHHHHHHHHcC
Confidence 4444 44 57788888863 567788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHH
Q 014050 148 NLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARIL 227 (431)
Q Consensus 148 ~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rll 227 (431)
+||+++|+++|..+|.+++.+|+.+.++++.+|++.|||.+|++++++|++++++.... .+.+...+++++|+
T Consensus 78 ~lP~~~el~~f~~~L~~~~~lp~~v~~~i~~~p~~~~pm~~l~~~vs~l~~~d~~~~~~-------~~~~~~~~~a~~li 150 (400)
T cd06114 78 ELPTAEQLQEFREEITRHTLVHEQMKRFFNGFPRDAHPMAILSAMVNALSAFYPDSLDV-------NDPEQRELAAIRLI 150 (400)
T ss_pred cCCCHHHHHHHHHHHHHccCCCHHHHHHHHhcccCCCHHHHHHHHHHHHhhcCcccccc-------CCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988765321 13344567799999
Q ss_pred hhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccC
Q 014050 228 GKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSG 307 (431)
Q Consensus 228 akiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ 307 (431)
+++|+|+|++||++.|++++.|++++||++|||+||++.+.+.++|++..+++||++||||||||+|+||||+|+++||+
T Consensus 151 a~~p~i~a~~~r~~~g~~~~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~l~~~LvL~aDH~~n~STfaaRv~aSt~ 230 (400)
T cd06114 151 AKVPTIAAMAYRYSIGQPFIYPDNDLSYVENFLHMMFAVPYEPYEVDPVVVKALDTILILHADHEQNASTSTVRMVGSSG 230 (400)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHhcCCCCccCCCCHHHHHHHHHHHeeeccCCCcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999998766667899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCCCCCHHHHHHHHhhcC--CcccccCCCCCCCCCchHHHHHHHHHHH
Q 014050 308 VDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGTVENIPEFIEGVKNRK--RKMSGFGHRVYKNYDPRAKVIRKLAEEV 385 (431)
Q Consensus 308 ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~~~~v~~~i~~~k~~~--~rL~GFGHrVYk~~DPRA~iL~~~a~el 385 (431)
+|+|+||+|||+||+||+|||||++|++||++|++++++++||++.+++| ++||||||||||+.|||+++|+++++++
T Consensus 231 adl~sav~agl~al~GplHGGA~~~v~~~l~~i~~~~~~~~~v~~~l~~~~~~~ipGfGH~vyk~~DPRa~~L~~~~~~l 310 (400)
T cd06114 231 ANLFASISAGIAALWGPLHGGANEAVLEMLEEIGSVGNVDKYIAKAKDKNDPFRLMGFGHRVYKNYDPRAKILKKTCDEV 310 (400)
T ss_pred CcHHHHHHHHHHhccCCcccChHHHHHHHHHHhcCcccHHHHHHHHHhcCCCccccCCCCCCCCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877 4999999999999999999999999998
Q ss_pred HHhhCC-CcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhccc
Q 014050 386 FSIVGR-DPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 386 ~~~~g~-~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
.+..|. ++++++++++|+++.+++||.+|++|||||||+|+||+.
T Consensus 311 ~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~l~pNvD~~~a~l~~~ 356 (400)
T cd06114 311 LAELGKDDPLLEIAMELEEIALKDDYFIERKLYPNVDFYSGIILRA 356 (400)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHH
Confidence 877774 689999999999999999999999999999999999864
No 9
>PRK14036 citrate synthase; Provisional
Probab=100.00 E-value=5.8e-93 Score=725.98 Aligned_cols=321 Identities=47% Similarity=0.790 Sum_probs=305.3
Q ss_pred eeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHH
Q 014050 95 KLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILD 174 (431)
Q Consensus 95 ~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~ 174 (431)
++|||||+||++|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+||+++|++.|...|.+++.+|+.+.+
T Consensus 2 ~~~~~Gl~gv~~~~t~Is~idg~~G~L~yRGy~i~dL~~~~~Feev~~LLl~G~lP~~~el~~f~~~L~~~~~lp~~v~~ 81 (377)
T PRK14036 2 CEYRPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEKSSFLETAYLLIWGELPTAEELEEFEQEVRMHRRVKYRIRD 81 (377)
T ss_pred CCCCCccCCCeeeeeeceEEECCCCEEEECCccHHHHHccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCC
Q 014050 175 IIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLS 254 (431)
Q Consensus 175 ~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~ls 254 (431)
+++.||+++|||.+|++++++|++++++... .+.+...++++||+|++|+|+|++||++.|++++.|++++|
T Consensus 82 ~i~~~p~~~hpm~~L~~~vs~l~~~~~~~~~--------~~~~~~~~~~~rliA~~p~i~a~~~r~~~g~~~~~p~~~l~ 153 (377)
T PRK14036 82 MMKCFPETGHPMDALQASAAALGLFYSRRAL--------DDPEYIRDAVVRLIAKIPTMVAAFQLIRKGNDPIQPRDDLD 153 (377)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhhcCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Confidence 9999999999999999999999999877531 23345567889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHH
Q 014050 255 YSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVL 334 (431)
Q Consensus 255 y~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl 334 (431)
|++|||+||++ ++|+|..+++||++||||||||+|+||||+|+++||++|+|+||+||++||+||+||||||+|+
T Consensus 154 ~a~nfl~ml~g-----~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aSt~ad~ys~v~agi~aL~GplHGGA~e~v~ 228 (377)
T PRK14036 154 YAANFLYMLTE-----REPDPLAARIFDRCLILHAEHTINASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGANEDVL 228 (377)
T ss_pred HHHHHHHHhcC-----CCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHhcCCcHHHHHHHHHHHccCccccChHHHHH
Confidence 99999999985 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccC
Q 014050 335 KMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKR 414 (431)
Q Consensus 335 ~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r 414 (431)
+||++|++++++++||++.+++|++||||||||||++|||+++|+++++++.+..++++++++++++|+++. ++|..|
T Consensus 229 ~ml~~i~~~~~~~~~v~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~--~~~~~k 306 (377)
T PRK14036 229 AMLEEIGSVENVRPYLDERLANKQKIMGFGHREYKVKDPRATILQKLAEELFARFGHDEYYEIALELERVAE--ERLGPK 306 (377)
T ss_pred HHHHHhCChhhHHHHHHHHHHCCCceecCCCCCCCCCCccHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--HHhccC
Confidence 999999999999999999999999999999999999999999999999999877888899999999999984 588889
Q ss_pred CCcccccchHhhhccc
Q 014050 415 KLYPNVDFYSGLIYRY 430 (431)
Q Consensus 415 ~LyPNVDfysg~i~~~ 430 (431)
+||||||||||+||+.
T Consensus 307 ~l~pNvD~~sa~l~~~ 322 (377)
T PRK14036 307 GIYPNVDFYSGLVYRK 322 (377)
T ss_pred CCCcChHHHHHHHHHH
Confidence 9999999999999964
No 10
>PRK12351 methylcitrate synthase; Provisional
Probab=100.00 E-value=1.3e-92 Score=722.87 Aligned_cols=315 Identities=31% Similarity=0.517 Sum_probs=295.7
Q ss_pred cCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 014050 98 DPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQ 177 (431)
Q Consensus 98 dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~ 177 (431)
+|||+|+.+|+|+||+|||++|+|+||||||+||+++++||||+||||+|+|||++|+++|+.+|..++.+|+.+.++++
T Consensus 9 ~~GL~gv~~~~T~is~i~~~~g~L~YRGy~I~dLa~~~~feeva~LL~~G~LP~~~el~~f~~~L~~~~~lp~~v~~~i~ 88 (378)
T PRK12351 9 SVALSGVVAGNTALCTVGKSGNDLHYRGYDILDLAEHCEFEEVAHLLVHGKLPTQAELAAYKTKLKALRGLPAAVKTVLE 88 (378)
T ss_pred CCCCCCeeeccccCeeEecCCCEEEECCccHHHHHhcCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC-CCCCCHH
Q 014050 178 AMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLP-SNNLSYS 256 (431)
Q Consensus 178 ~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p-~~~lsy~ 256 (431)
+||+++|||.+|++++++|++++++... .+.+...++++||+||+|+|+|++||++.|..++.| ++++||+
T Consensus 89 ~~p~~~hPM~~L~~~vs~l~~~d~~~~~--------~~~~~~~~~a~rliA~~p~i~a~~~r~~~~~~~~~p~~~~ls~a 160 (378)
T PRK12351 89 AIPAAAHPMDVMRTGVSVLGCLLPEKED--------HNFSGARDIADRLLASLGSILLYWYHYSHNGRRIEVETDDDSIG 160 (378)
T ss_pred hCCccCCHHHHHHHHHHhhcccCccccc--------CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCcCCHH
Confidence 9999999999999999999999987531 122333567899999999999999999997766665 6779999
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHH
Q 014050 257 ENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKM 336 (431)
Q Consensus 257 ~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~m 336 (431)
+|||+||++ .+|+|..+++||++||||||||+||||||+|++|||++|+|+||+|||+|||||+||||||+|++|
T Consensus 161 ~Nfl~ml~g-----~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaSt~ad~~sav~agi~aL~GplHGGA~e~v~~m 235 (378)
T PRK12351 161 GHFLHLLHG-----KKPSESWVKAMHTSLILYAEHEFNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEI 235 (378)
T ss_pred HHHHHHhcC-----CCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhccCCCHHHHHHHHHHhccCCccCchHHHHHHH
Confidence 999999986 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCC
Q 014050 337 LNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKL 416 (431)
Q Consensus 337 L~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~L 416 (431)
|++|++++++++||++.+++|++||||||||||++||||++|+++++++.+..|+++++++++++|+++.+ .|+|
T Consensus 236 l~~i~~~~~~~~~v~~~l~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-----~k~l 310 (378)
T PRK12351 236 QQRYDTPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKKLSKEAGDTKLYDIAERLETVMWE-----EKKM 310 (378)
T ss_pred HHHhCCHHHHHHHHHHHHhCCCccccCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----HhCC
Confidence 99999999999999999999999999999999999999999999999998888888999999999998865 5899
Q ss_pred cccccchHhhhccc
Q 014050 417 YPNVDFYSGLIYRY 430 (431)
Q Consensus 417 yPNVDfysg~i~~~ 430 (431)
|||||||||+||+.
T Consensus 311 ~pNvD~ysg~l~~~ 324 (378)
T PRK12351 311 FPNLDWFSAVSYHM 324 (378)
T ss_pred CCChHHHHHHHHHH
Confidence 99999999999974
No 11
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=100.00 E-value=6.3e-92 Score=714.86 Aligned_cols=311 Identities=34% Similarity=0.568 Sum_probs=294.0
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
|||+|+.+|+|+||+|||++|+|+||||||+||+++++||||+||||+|+|||++|+++|+.+|..++.+|+.+.+++++
T Consensus 1 ~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dLa~~~sfeeva~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~ 80 (363)
T cd06108 1 GGLAGVVAGQTAISTVGKGGKGLTYRGYDIEDLAENATFEEVAYLLLYGKLPTRKQLDAYKTKLVALRRLPAALKTVLEL 80 (363)
T ss_pred CCCCCCeeeeeeCceEeCCCCEEEECCccHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC-CCCCCHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLP-SNNLSYSE 257 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p-~~~lsy~~ 257 (431)
||+++|||.+|++++++|++++++... ....++++||+||+|+|+|++||++.|..++.| ++++||++
T Consensus 81 ~p~~~hpm~~L~~~vs~l~~~d~~~~~-----------~~~~~~a~rlia~~p~i~a~~~r~~~~~~~~~p~~~~~s~a~ 149 (363)
T cd06108 81 IPKDSHPMDVMRTGCSMLGCLEPENEF-----------SQQYEIAIRLLAIFPSILLYWYHYSHSGKRIETETDEDSIAG 149 (363)
T ss_pred CCCCCChHHHHHHHHHhhhhcCCcccc-----------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCHHH
Confidence 999999999999999999999887531 223467899999999999999999998777766 77899999
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHH
Q 014050 258 NFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKML 337 (431)
Q Consensus 258 NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL 337 (431)
|||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||+|||||+||||||+|++||
T Consensus 150 nfl~ml~g-----~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aSt~ad~~sav~agi~al~GplHGGA~e~v~~~l 224 (363)
T cd06108 150 HFLHLLHG-----KKPGELEIKAMDVSLILYAEHEFNASTFAARVTASTLSDFYSAITGAIGTLRGPLHGGANEAAMELI 224 (363)
T ss_pred HHHHHhcC-----CCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhccCCCHHHHHHHHHHhccCCcccchHHHHHHHH
Confidence 99999986 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCc
Q 014050 338 NEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLY 417 (431)
Q Consensus 338 ~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~Ly 417 (431)
++|++++++++||++.+++|++||||||||||++||||++|+++++++.+..+.++++++++++|+++.+ .|+||
T Consensus 225 ~~i~~~~~~~~~v~~~l~~~~~i~GFGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~a~~ie~~~~~-----~~~l~ 299 (363)
T cd06108 225 ERFKSPEEAEQGLLEKLERKELIMGFGHRVYKEGDPRSDIIKKWSKKLSEEGGDPLLYQISERIEEVMWE-----EKKLF 299 (363)
T ss_pred HHhCCHHHHHHHHHHHHhcCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----hcCCC
Confidence 9999999999999999999999999999999999999999999999997777788999999999999875 59999
Q ss_pred ccccchHhhhccc
Q 014050 418 PNVDFYSGLIYRY 430 (431)
Q Consensus 418 PNVDfysg~i~~~ 430 (431)
||||||+|+||+.
T Consensus 300 pNvD~~sa~l~~~ 312 (363)
T cd06108 300 PNLDFYSASAYHF 312 (363)
T ss_pred cChHHHHHHHHHH
Confidence 9999999999864
No 12
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=100.00 E-value=5.1e-92 Score=726.63 Aligned_cols=328 Identities=28% Similarity=0.438 Sum_probs=293.4
Q ss_pred ccceeecC---CCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCC---------HHHHHHHHHhCCCCCHHHHHHHH
Q 014050 92 KGLKLYDP---GYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSS---------FLEVAYLLMYGNLPSESQLTDWE 159 (431)
Q Consensus 92 ~g~~~~dp---G~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~s---------FeEva~LL~~G~LPt~~ql~~f~ 159 (431)
.|.+|+|| |+.++.+|+|+||+|||++| |+||||+|+||+++++ ||||+||||+|+|||++|++.|+
T Consensus 28 ~~~~t~d~~~~Gl~g~~~~~t~iS~iDg~~G-l~YRGy~I~dLa~~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~ 106 (427)
T cd06105 28 VGEVTVDMVYGGMRGIKGLVWETSVLDPEEG-IRFRGLSIPECQKLLPKAPGGEEPLPEGLFWLLLTGEVPTKEQVSALS 106 (427)
T ss_pred eeeeecCcccCCCCCceecceeceeEcCCCC-eEECCccHHHHHhhCcccccccccCHHHHHHHHHcCCCCCHHHHHHHH
Confidence 48888887 55566678889999999999 6999999999999986 99999999999999999999999
Q ss_pred HHHhhcCCCCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHH
Q 014050 160 FAVSQHSAVPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYL 239 (431)
Q Consensus 160 ~~l~~~~~lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr 239 (431)
.+|.+++.+|+.+.+++++||+++|||.+|++++++|+++++.......+.+....++...+++++|+||+|+|+|++||
T Consensus 107 ~~L~~~~~lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~d~f~~~~~~~~~~~~~~~~~~~~~~~LiAk~p~i~A~~yr 186 (427)
T cd06105 107 KEWAARAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESKFAKAYAEGIHKSKYWEYVYEDSMDLIAKLPCVAAKIYR 186 (427)
T ss_pred HHHHHcCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhcccchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865321000011111122445677899999999999999999
Q ss_pred HH-cCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccC-CCchhhhHHHhhccCCCHHHHHHHH
Q 014050 240 RM-AGRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHE-MNCSTSAARHLASSGVDVYTALAGA 317 (431)
Q Consensus 240 ~~-~G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHe-ln~ST~aaRvvaSt~ad~yaavaAg 317 (431)
++ .|.++++|++++||++|||+||++ + +|..+++||++|||||||| +||||||+|++|||++|+|+||+||
T Consensus 187 ~~~~g~~~~~pd~~ls~a~Nfl~Ml~~------~-~~~~~~~l~~~lvLhADHeg~NaSTfaarvvaSt~ad~ysav~ag 259 (427)
T cd06105 187 NLYRGGKIIAIDSNLDWSANFANMLGY------T-DPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAA 259 (427)
T ss_pred HHhCCCCcCCCCCCcCHHHHHHHHhcC------C-CHHHHHHHHHHHhhhccccCccchHHHHHHHhccCCCHHHHHHHH
Confidence 95 599999999999999999999973 3 4889999999999999999 8999999999999999999999999
Q ss_pred hhcccCCcccChHHHHHHHHHHh----C---CCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhC
Q 014050 318 VGALYGPLHGGANEAVLKMLNEI----G---TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG 390 (431)
Q Consensus 318 i~AL~GPlHGGAneavl~mL~eI----~---~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g 390 (431)
|+|||||+||||||+|++||.+| + +++++++||++.+++|++||||||||||++||||++|+++|+++ .+
T Consensus 260 i~aL~GplHGGA~e~v~~~l~ei~~~~g~~~~~~~v~~~i~~~l~~g~~i~GFGHrvyk~~DPRa~~lk~~~~~~---~~ 336 (427)
T cd06105 260 MNGLAGPLHGLANQEVLVWLTKLQKEVGKDVSDEQLREYVWKTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKH---LP 336 (427)
T ss_pred HhhcCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCcHHHHHHHHHH---cC
Confidence 99999999999999999999765 3 45689999999999999999999999999999999999999986 46
Q ss_pred CCcHHHHHHHHHHHHhc--CcccccCCCcccccchHhhhccc
Q 014050 391 RDPLIEVAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 391 ~~~l~~iA~~Le~~a~~--d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
+++++++++++|+++.+ ++||+.|++|||||||||+||++
T Consensus 337 ~~~~~~~~~~ie~~a~~~l~~~~~~~~l~pNVDfysg~l~~~ 378 (427)
T cd06105 337 NDPLFKLVSQLYKIVPPVLTEQGKAKNPWPNVDAHSGVLLQY 378 (427)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Confidence 78999999999999877 88999999999999999999974
No 13
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=100.00 E-value=3.8e-91 Score=712.39 Aligned_cols=321 Identities=44% Similarity=0.751 Sum_probs=303.7
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDII 176 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~ 176 (431)
|||||+||.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+||+++|++.|...|.+++.+|+.+.+++
T Consensus 1 ~~~Gl~gv~~~~t~is~id~~~G~L~yRGy~i~dL~~~~~Feev~~LLl~G~lP~~~el~~~~~~L~~~~~lp~~v~~~i 80 (373)
T cd06112 1 YIPGLAGVPAAESSISYIDGKNGILEYRGYDIEELAEYSSFEEVALLLLDGDLPTAAELEEFDKELRQHRRVKYNIRDMM 80 (373)
T ss_pred CCCccCCCeeeeeeceEEeCCCCEEEECCccHHHHhcCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHH
Q 014050 177 QAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYS 256 (431)
Q Consensus 177 ~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~ 256 (431)
+.||+++|||.+|++++++|++++++.+. ...+++...+++++|+|++|+|+|++||++.|.+++.|++++||+
T Consensus 81 ~~~p~~~hpm~~L~~~vs~l~~~~~~~~~------~~~~~~~~~~~a~~liA~~p~i~a~~~r~~~g~~~~~p~~~ls~~ 154 (373)
T cd06112 81 KCFPETGHPMDMLQATVAALGMFYPKPEV------LKPNPDYIDAATVKLIAKMPTLVAMWARIRNGDDPIEPRPDLDYA 154 (373)
T ss_pred HhCCCCCCHHHHHHHHHHhhhccCccccc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCCHH
Confidence 99999999999999999999999887531 112445556789999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHH
Q 014050 257 ENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKM 336 (431)
Q Consensus 257 ~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~m 336 (431)
+|||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+||||||+|++|
T Consensus 155 ~nfl~ml~g-----~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~ 229 (373)
T cd06112 155 ENFLYMLFG-----EEPDPATAKILDACLILHAEHTMNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEM 229 (373)
T ss_pred HHHHHHHhC-----CCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHH
Confidence 999999986 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHhcCcccccCC
Q 014050 337 LNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG-RDPLIEVAVALEKAALSDEYFVKRK 415 (431)
Q Consensus 337 L~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g-~~~l~~iA~~Le~~a~~d~yf~~r~ 415 (431)
|++|++++++++||++.+++|++||||||||||+.|||+++|+++++++.+..+ .++++++++++|+++. ++|++|+
T Consensus 230 l~~i~~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~i~~~~e~~~~--~~~~~k~ 307 (373)
T cd06112 230 LEEIGSPENVKAYLDKKLANKQKIWGFGHRVYKTKDPRATILQKLAEDLFAKMGELSKLYEIALEVERLCE--ELLGHKG 307 (373)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCeeeCCCCccCCCCCcHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHH--HHhCcCC
Confidence 999999999999999999999999999999999999999999999999987777 6899999999999886 4788899
Q ss_pred CcccccchHhhhccc
Q 014050 416 LYPNVDFYSGLIYRY 430 (431)
Q Consensus 416 LyPNVDfysg~i~~~ 430 (431)
+|||||||||++|+.
T Consensus 308 l~pNvd~~s~~l~~~ 322 (373)
T cd06112 308 VYPNVDFYSGIVYKE 322 (373)
T ss_pred CCcChHHHHHHHHHH
Confidence 999999999999874
No 14
>cd06109 BsCS-I_like Bacillus subtilis (Bs) citrate synthase CS-I_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-I, one of two CS isozymes in the gram-positive B. subtilis. The majority of CS activity in B. subtilis is provided by the other isozyme, BsCS-II (not included in this group). BsCS-
Probab=100.00 E-value=3e-91 Score=707.34 Aligned_cols=305 Identities=37% Similarity=0.578 Sum_probs=290.5
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
|||+||++|+|+||+|||++|+|+||||||+||+++++||||+||||+|+|||++|+++|+.+|..++.+|+.+.+++++
T Consensus 1 ~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dL~~~~~feev~~LLl~G~lP~~~el~~f~~~l~~~~~lp~~v~~~~~~ 80 (349)
T cd06109 1 PGLEGVVAAETVLSDVDGEAGRLIIRGYSVEDLAGSASFEDVAALLWNGFFPDLPELEEFRAALAAARALPDVVAALLPA 80 (349)
T ss_pred CCcCCceeeeeeceeEeCCCCeEEECCccHHHHHhhCCHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSEN 258 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~N 258 (431)
| +++|||.+|++++++++.+ ...+++++++|++|+|+|++||++.|+++++|++++||++|
T Consensus 81 ~-~~~~pm~~l~~~~s~~~~~------------------~~~~~a~~liA~~p~i~a~~~r~~~g~~~~~p~~~ls~a~n 141 (349)
T cd06109 81 L-AGLDPMDALRALLALLPDS------------------PDLATALRLLAAAPVITAALLRLSRGKQPIAPDPSLSHAAD 141 (349)
T ss_pred C-CCcCHHHHHHHHHHhcCch------------------hHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCHHHH
Confidence 9 9999999999999987653 12457889999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH
Q 014050 259 FLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN 338 (431)
Q Consensus 259 fL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~ 338 (431)
||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||+|||||+||||||+|++||+
T Consensus 142 fl~ml~g-----~~p~~~~~~~l~~~Lvl~ADHg~n~ST~aaRv~aSt~ad~~savaagi~al~GplHGGA~e~v~~~l~ 216 (349)
T cd06109 142 YLRMLTG-----EPPSEAHVRALDAYLVTVADHGMNASTFTARVIASTEADLTSAVLGAIGALKGPLHGGAPGPVLDMLD 216 (349)
T ss_pred HHHHhCC-----CCCChHHHHHHHHHHhHhcccCCCchhhHHHHHhccCCcHHHHHHHHHHhccCCcccChHHHHHHHHH
Confidence 9999986 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc--CcccccCCC
Q 014050 339 EIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALS--DEYFVKRKL 416 (431)
Q Consensus 339 eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~--d~yf~~r~L 416 (431)
+|++++++++||++.+++|++||||||||||++|||+++|+++++++.. .+++++++++||+++.+ ++||++|+|
T Consensus 217 ei~~~~~~~~~v~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~---~~~~~~~a~~ie~~~~~~~~~~~~~r~l 293 (349)
T cd06109 217 AIGTPENAEAWLREALARGERLMGFGHRVYRVRDPRADVLKAAAERLGA---PDERLEFAEAVEQAALALLREYKPGRPL 293 (349)
T ss_pred HhCChhhHHHHHHHHHHcCCeecCCCCCCCCCCCcCHHHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999842 46899999999998876 789999999
Q ss_pred cccccchHhhhccc
Q 014050 417 YPNVDFYSGLIYRY 430 (431)
Q Consensus 417 yPNVDfysg~i~~~ 430 (431)
|||||||||+||++
T Consensus 294 ~pNvD~~sg~l~~~ 307 (349)
T cd06109 294 ETNVEFYTALLLEA 307 (349)
T ss_pred CCCchhhHHHHHHH
Confidence 99999999999974
No 15
>PRK14035 citrate synthase; Provisional
Probab=100.00 E-value=4.5e-91 Score=710.39 Aligned_cols=314 Identities=36% Similarity=0.597 Sum_probs=296.1
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDII 176 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~ 176 (431)
+||||+||++|+|+||+|||+ .|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|..++.+|+.+.+++
T Consensus 3 ~~~Gl~~v~~~~s~Is~id~~--~L~YRGy~i~dLa~~~~Feeva~LLl~G~lP~~~el~~f~~~L~~~~~lp~~v~~~i 80 (371)
T PRK14035 3 LQRGLEGVIAAETKISSIIDS--QLTYAGYDIDDLAENASFEEVIFLLWNYRLPTEEELAHLKGKLRKYMTLNDRVYQHF 80 (371)
T ss_pred CCCCCCCceEeeeeeeEecCC--EeEECCccHHHHHhcCCHHHHHHHHHCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 589999999999999999985 599999999999999999999999999999999999999999999999999999999
Q ss_pred HhCC-CCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCH
Q 014050 177 QAMP-HDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSY 255 (431)
Q Consensus 177 ~~~p-~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy 255 (431)
..|| .++|||++|++++++|++++|+... .+++...++++||+||+|+|+|++||++.|+++++|++++||
T Consensus 81 ~~~~~~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~~~~~~~a~rliA~~p~i~A~~~r~~~g~~~~~p~~~ls~ 152 (371)
T PRK14035 81 EEYSTDHVHPMTALRTSVSYLAHFDPDAEE--------ESDEARYERAIRIQAKVASLVTAFARVRQGKEPLKPRPDLSY 152 (371)
T ss_pred HhcCCcCCCHHHHHHHHHHHHhccCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCH
Confidence 9976 6899999999999999999887531 234455778899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHH
Q 014050 256 SENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLK 335 (431)
Q Consensus 256 ~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~ 335 (431)
++|||+||++ .+|++..+++||++||||||||+|+||||+|+++||++|+|+||+||+++||||+||||||+|++
T Consensus 153 ~~nfl~ml~g-----~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aSt~ad~~sav~Agi~al~GplHGGA~e~v~~ 227 (371)
T PRK14035 153 AANFLYMLRG-----ELPTDIEVEAFNKALVLHADHELNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGANERVMD 227 (371)
T ss_pred HHHHHHHhcc-----CCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccChHHHHHH
Confidence 9999999986 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCC
Q 014050 336 MLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRK 415 (431)
Q Consensus 336 mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~ 415 (431)
||++|++++++++||++.+++|++||||||||||++||||++|+++++++.+..+.+++++++++||+++.+ .||
T Consensus 228 ~l~~i~~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~ie~~~~~-----~k~ 302 (371)
T PRK14035 228 MLSEIRSIGDVDAYLDEKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKGTGREELFEMSVKIEKRMKE-----EKG 302 (371)
T ss_pred HHHHhCChHHHHHHHHHHHhcCCcccCCCCCCCCCCCccHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-----hcC
Confidence 999999999999999999999999999999999999999999999999997766778999999999999876 589
Q ss_pred CcccccchHhhhccc
Q 014050 416 LYPNVDFYSGLIYRY 430 (431)
Q Consensus 416 LyPNVDfysg~i~~~ 430 (431)
||||||||+|+||+.
T Consensus 303 l~pNvD~~s~~l~~~ 317 (371)
T PRK14035 303 LIPNVDFYSATVYHV 317 (371)
T ss_pred CCCChHHHHHHHHHH
Confidence 999999999999864
No 16
>cd06117 Ec2MCS_like_1 Subgroup of Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate, but has a partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate, prefer PrCoA as substrate, but can also can use AcCoA. Re 2-MCS1 at a low rate can use butyryl-CoA and valeryl-CoA. A second Ralstonia eu
Probab=100.00 E-value=6.2e-91 Score=708.65 Aligned_cols=314 Identities=30% Similarity=0.509 Sum_probs=293.7
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
.||+|+.+++|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|.+++.+|+.+.+++++
T Consensus 1 ~GL~gv~~~~T~is~v~~~~g~L~YRGy~i~dLa~~~~FEeva~LL~~G~lPt~~el~~f~~~L~~~~~lp~~v~~~i~~ 80 (366)
T cd06117 1 VALSGVAAGNTALCTVGRSGNDLHYRGYDILDLAEKCEFEEVAHLLVHGKLPTKSELAAYKTKLKSLRGLPANVKTALEQ 80 (366)
T ss_pred CCCCCeeEecccCeeeecccCEEEECCccHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHh
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC-CCCCCHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLP-SNNLSYSE 257 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p-~~~lsy~~ 257 (431)
||+++|||.+|++++++|++++++... .+.....++++||+|++|+|+|++||++.|..++.| ++++||++
T Consensus 81 ~p~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~~~~~~~a~rlia~~p~i~a~~~r~~~~~~~i~p~~~~~s~a~ 152 (366)
T cd06117 81 LPAAAHPMDVMRTGVSVLGCVLPEKED--------HPVSGARDIADRLMASLGSILLYWYHYSHNGKRIEVETDDDSIGG 152 (366)
T ss_pred CCccCCHHHHHHHHHhhhcccCccccc--------CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCcCCHHH
Confidence 999999999999999999999987532 111223456899999999999999999888877777 56799999
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHH
Q 014050 258 NFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKML 337 (431)
Q Consensus 258 NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL 337 (431)
|||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||+||+||+||||||+|++||
T Consensus 153 Nfl~ml~g-----~~p~~~~~~~l~~~LvL~ADHg~n~ST~aarv~aSt~ad~~sav~agi~aL~GplHGGA~e~v~~~l 227 (366)
T cd06117 153 HFLHLLHG-----EKPSESWEKAMHISLILYAEHEFNASTFTARVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQ 227 (366)
T ss_pred HHHHHhcC-----CCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHHccCCcHHHHHHHHHHhccCCccCchHHHHHHHH
Confidence 99999986 4799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCc
Q 014050 338 NEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLY 417 (431)
Q Consensus 338 ~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~Ly 417 (431)
++|++++++++||++.+++|++||||||||||.+||||++|+++++++.+..+.++++++++++|+++.+ .|+||
T Consensus 228 ~~i~~~~~~~~~i~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~~ie~~~~~-----~k~l~ 302 (366)
T cd06117 228 QRYESADEAEADIRRRVENKEVVIGFGHPVYTIADPRNQVIKEVAKQLSKEGGDMKMFDIAERLETVMWE-----EKKMF 302 (366)
T ss_pred HHhCCHHHHHHHHHHHHhcCCcccCCCCCCCCCCCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-----HhCCC
Confidence 9999999999999999999999999999999999999999999999998777778999999999998865 58999
Q ss_pred ccccchHhhhccc
Q 014050 418 PNVDFYSGLIYRY 430 (431)
Q Consensus 418 PNVDfysg~i~~~ 430 (431)
||||||||+||+.
T Consensus 303 pNvD~~s~~l~~~ 315 (366)
T cd06117 303 PNLDWFSAVSYHM 315 (366)
T ss_pred cCcHHHHHHHHHH
Confidence 9999999999974
No 17
>cd06106 ScCit3_like Saccharomyces cerevisiae (Sc) 2-methylcitrate synthase Cit3-like. 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxaloacetate (OAA) to form 2-methylcitrate and CoA. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with OAA to form citrate and CoA, the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the a
Probab=100.00 E-value=3.5e-91 Score=720.55 Aligned_cols=323 Identities=24% Similarity=0.376 Sum_probs=289.5
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhc-------CCH--HHHHHHHHhCCCCCHHHHHHHHHHHhhcCC
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAES-------SSF--LEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~-------~sF--eEva~LL~~G~LPt~~ql~~f~~~l~~~~~ 167 (431)
+-+||.|+++++|+||+|||++| |+||||+|+||+++ ++| |||+||||+|+|||++|+++|+.+|.+++.
T Consensus 36 ~~~GL~gv~~~~t~is~idg~~G-l~YRGy~I~dLa~~~~~~~~~~~f~~Eev~yLLl~G~LPt~~el~~f~~~L~~~~~ 114 (428)
T cd06106 36 VLGGMRGLKSMLWEGSVLDAEEG-IRFHGKTIPECQKELPKAPIGGEMLPESMLWLLLTGKVPTFEQARGLSKELAERGK 114 (428)
T ss_pred hcccccCCeeeeecCeEECCCCC-eeECCCcHHHHHhhCccccccCCccHHHHHHHHHcCcCCCHHHHHHHHHHHHHcCC
Confidence 56899999999999999999999 79999999999998 789 999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCC---CCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCC
Q 014050 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPD---ANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGR 244 (431)
Q Consensus 168 lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~---~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~ 244 (431)
+|+.+.+++++||+++|||.+|++++++|+.+... ..+ +.+.-..++...++++||+||+|+|+|++||++.|+
T Consensus 115 lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~y~~---~~~~~~~~~~~~~~~~rLiAk~ptI~A~~yr~~~g~ 191 (428)
T cd06106 115 LPHYIEKLLDSLPKTLHPMTQLSIGVAALNHDSKFAAAYEK---GIKKTEYWEPTLEDSLNLIARLPALAARIYRNVYGE 191 (428)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccc---CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999863210 000 000001123446789999999999999999999875
Q ss_pred --CCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccC-CCchhhhHHHhhccCCCHHHHHHHHhhcc
Q 014050 245 --PPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHE-MNCSTSAARHLASSGVDVYTALAGAVGAL 321 (431)
Q Consensus 245 --~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHe-ln~ST~aaRvvaSt~ad~yaavaAgi~AL 321 (431)
++.+|++++||++||||||+ .+|+|..+++||++|||||||| +|+||||+|++|||++|+|+||+|||+||
T Consensus 192 ~~~~~~p~~~ls~a~NFL~Mlg------~~p~~~~~~~l~~~LiL~ADHeg~NaSTfaarvvaST~ad~ysav~agi~aL 265 (428)
T cd06106 192 GHGLGKIDPEVDWSYNFTSMLG------YGDNLDFVDLLRLYIALHGDHEGGNVSAHTTHLVGSALSDPYLSYSAGLMGL 265 (428)
T ss_pred CCCCCCCCCCcCHHHHHHHHhC------CCCChHHHHHHHHHHhhhcccCCccchHHHHHHHhccCCCHHHHHHHHHHhc
Confidence 77889999999999999994 3678999999999999999999 89999999999999999999999999999
Q ss_pred cCCcccChHHHHHHHHHH----hCC---CCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcH
Q 014050 322 YGPLHGGANEAVLKMLNE----IGT---VENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 394 (431)
Q Consensus 322 ~GPlHGGAneavl~mL~e----I~~---~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l 394 (431)
|||+|||||++|++||++ |++ ++++++||++.+++|++||||||||||++||||++|+++++++.+. +.+++
T Consensus 266 ~GPlHGGAne~v~~~l~e~~~~ig~~~~~~~~~~~i~~~l~~g~~i~GfGHrvYk~~DPRa~~l~~~~~~l~~~-~~~~~ 344 (428)
T cd06106 266 AGPLHGLAAQEVLRWILEMQKNIGSKATDQDIRDYLWKTLKSGRVVPGYGHAVLRKPDPRFTALMEFAQTRPEL-ENDPV 344 (428)
T ss_pred CCCcccChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCcHHHHHHHHHHHhc-cCCHH
Confidence 999999999999997655 463 4799999999999999999999999999999999999999998654 45799
Q ss_pred HHHHHHHHHHHhc--CcccccCCCcccccchHhhhccc
Q 014050 395 IEVAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 395 ~~iA~~Le~~a~~--d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
+++++++|+++.+ ++||+.|++|||||||||+||+.
T Consensus 345 ~~~a~~ie~~~~~~l~~~~~~~~l~pNVDfysg~v~~~ 382 (428)
T cd06106 345 VQLVQKLSEIAPGVLTEHGKTKNPFPNVDAASGVLFYH 382 (428)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCchhHHHHHHHH
Confidence 9999999999876 67899999999999999999974
No 18
>PRK14037 citrate synthase; Provisional
Probab=100.00 E-value=1.2e-90 Score=708.81 Aligned_cols=318 Identities=36% Similarity=0.639 Sum_probs=297.8
Q ss_pred eecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHH
Q 014050 96 LYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDI 175 (431)
Q Consensus 96 ~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~ 175 (431)
.+||||+||++++|+||+|||++|+|+||||||+||+++++||||+||||+|+||+++|++.|...|..++.+|+.+.++
T Consensus 3 ~~~~GL~gv~~~~t~is~id~~~g~L~yRGy~i~dL~~~~~Feev~~LLl~G~lP~~~e~~~f~~~L~~~~~lp~~v~~~ 82 (377)
T PRK14037 3 VISKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGELPTKKELNDLKEKLNEEYEVPQEVIDS 82 (377)
T ss_pred CCCCCCCCCeeeeeeceEEeCCCCEEEECCccHHHHHccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCH
Q 014050 176 IQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSY 255 (431)
Q Consensus 176 ~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy 255 (431)
+++||+++|||.+|++++++|++++++.. . .....++++||+|++|+|+|++||++.|+++++|++++||
T Consensus 83 ~~~~p~~~hpm~~l~~~vs~l~~~~~~~~---------~-~~~~~~~a~~liA~~p~i~a~~yr~~~g~~~~~p~~~~s~ 152 (377)
T PRK14037 83 IYLMPRDSDAIGLMEAAFAALASIDKNFK---------W-KENDKEKAISIIAKMATIVANVYRRKEGNKPRIPEPSDSF 152 (377)
T ss_pred HHhCCccCCcHHHHHHHHHhhhccCCccc---------c-cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCH
Confidence 99999999999999999999999876541 1 1223467899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHH
Q 014050 256 SENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLK 335 (431)
Q Consensus 256 ~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~ 335 (431)
++|||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||+|||||+||||||+|++
T Consensus 153 a~nfl~ml~G-----~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aSt~ad~ysav~agi~al~GplHGGA~e~v~~ 227 (377)
T PRK14037 153 AESFLLASFA-----REPTAEEIKAMDAALILYTDHEVPASTTAALVAASTLSDMYSCITAALAALKGPLHGGAAEEAFK 227 (377)
T ss_pred HHHHHHHHhc-----cCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhccCCCHHHHHHHHHHhccCcccCChHHHHHH
Confidence 9999999986 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHH-hhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHhcCccccc
Q 014050 336 MLNEIGTVENIPEFIEGV-KNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVG-RDPLIEVAVALEKAALSDEYFVK 413 (431)
Q Consensus 336 mL~eI~~~~~v~~~i~~~-k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g-~~~l~~iA~~Le~~a~~d~yf~~ 413 (431)
||++|++++++++|+++. +++|++||||||||||+.||||++|+++++++.+..+ .+++++++.++|+++. +||..
T Consensus 228 ~l~ei~~~~~~~~~~~~~~~~~~~~i~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~ia~~~e~~~~--~~~~~ 305 (377)
T PRK14037 228 QFVEIGDPNNVEMWFNDKIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIERNSEAKKYFEIAQKLEELGI--KQFGS 305 (377)
T ss_pred HHHHhcChhhHHHHHHHHHhcCCCeecCCCCCCCCCCCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH--HHhhc
Confidence 999999999999999874 4566899999999999999999999999999977666 3789999999999886 48888
Q ss_pred CCCcccccchHhhhccc
Q 014050 414 RKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 414 r~LyPNVDfysg~i~~~ 430 (431)
|+||||||||+|+||+.
T Consensus 306 k~l~pNvD~~sa~l~~~ 322 (377)
T PRK14037 306 KGIYPNTDFYSGIVFYA 322 (377)
T ss_pred cCCCCChHHHHHHHHHH
Confidence 99999999999999864
No 19
>cd06103 ScCS-like Saccharomyces cerevisiae (Sc) citrate synthase (CS)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homo
Probab=100.00 E-value=2.7e-90 Score=714.20 Aligned_cols=323 Identities=28% Similarity=0.405 Sum_probs=290.5
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcC---------CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESS---------SFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~---------sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~ 167 (431)
+++||+|+++|+|+||+|||++| |+||||||+||++++ +||||+||||+|+|||++|+++|+.+|.+++.
T Consensus 36 ~~~GL~gv~~~~t~Is~iDg~~G-l~YRGy~I~dLa~~~~~~~~~~~~~fEev~yLLl~G~LPt~~el~~f~~~L~~~~~ 114 (426)
T cd06103 36 VIGGMRGMKGLVYETSVLDPDEG-IRFRGKTIPECQELLPKADGGGEPLPEGLFWLLLTGEVPTEEQVDELSKEWAKRAE 114 (426)
T ss_pred hccCcCCCeeeeeeCeeEcCCCC-eEECCccHHHHHhhCccccccCcCcHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999998 589999999999986 29999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccC-CCcccchhHhHHHHHHHHhhhhHHHHHHHHHH--cCC
Q 014050 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKG-QDIYKSKQVRDKQIARILGKAPTIAAAAYLRM--AGR 244 (431)
Q Consensus 168 lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g-~~~~~~~~~~~~~~~rllakiptiaA~~yr~~--~G~ 244 (431)
+|+.+.+++++||+++|||.+|++++++|+++++.......+ .+...+.+...+++++|+||+|+|+|++||++ .|+
T Consensus 115 lp~~v~~~i~~~p~~~hPM~~L~~~vs~L~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~liA~~p~I~A~~yr~~~~~g~ 194 (426)
T cd06103 115 VPSHVVKMIDNLPRNLHPMTQLSAAILALQSESKFAKAYAEGKINKTTYWEYVYEDAMDLIAKLPVVAAKIYRRKYRKGG 194 (426)
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHhccccccchhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999865311000000 00001234456789999999999999999997 499
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccC-CCchhhhHHHhhccCCCHHHHHHHHhhcccC
Q 014050 245 PPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHE-MNCSTSAARHLASSGVDVYTALAGAVGALYG 323 (431)
Q Consensus 245 ~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHe-ln~ST~aaRvvaSt~ad~yaavaAgi~AL~G 323 (431)
++++|++++||++|||+||++ + +|..+++||++|||||||| +||||||+|++|||++|+|+||+|||+||||
T Consensus 195 ~~~~p~~~ls~aeNfl~ml~~------~-~~~~~~~l~~~LiL~ADHe~~NaSTfaaRvvaSt~ad~ysav~agi~aL~G 267 (426)
T cd06103 195 EIGAIDSKLDWSANFAHMLGY------E-DEEFTDLMRLYLTLHSDHEGGNVSAHTSHLVGSALSDPYLSFSAALNGLAG 267 (426)
T ss_pred CccCCCCCcCHHHHHHHHhCC------C-CHHHHHHHHHHHhhhhccCCccchHHHHHHHhccCCCHHHHHHHHHhhcCC
Confidence 999999999999999999953 2 2788999999999999999 8999999999999999999999999999999
Q ss_pred CcccChHHHHHHHHHHhC-------CCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHH
Q 014050 324 PLHGGANEAVLKMLNEIG-------TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIE 396 (431)
Q Consensus 324 PlHGGAneavl~mL~eI~-------~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~ 396 (431)
|+|||||++|++||++|+ +++++++||++.+++|++||||||||||++||||++|+++++++.. .+++++
T Consensus 268 plHGGA~e~v~~~l~ei~~~ig~~~~~~~~~~~v~~~l~~~~~i~GfGHrvYk~~DPRa~~L~~~~~~~~~---~~~~~~ 344 (426)
T cd06103 268 PLHGLANQEVLKWLLKMQKELGKDVSDEELEKYIWDTLNSGRVVPGYGHAVLRKTDPRFTCQREFALKHLP---DDPLFK 344 (426)
T ss_pred CcccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCcccCCCCCCCCCCCCchHHHHHHHHHHhc---CCHHHH
Confidence 999999999999998774 5689999999999999999999999999999999999999999853 568999
Q ss_pred HHHHHHHHHhc--CcccccCCCcccccchHhhhccc
Q 014050 397 VAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 397 iA~~Le~~a~~--d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
+++++|+++.+ +++|+.|++|||||||||+||+.
T Consensus 345 ~a~~ie~~~~~~~~~~~~~k~l~pNVDfysa~v~~~ 380 (426)
T cd06103 345 LVAQCYKIIPGVLKEHGKVKNPYPNVDAHSGVLLQH 380 (426)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCChHhHHHHHHHH
Confidence 99999999876 78899999999999999999974
No 20
>PRK14034 citrate synthase; Provisional
Probab=100.00 E-value=5.9e-89 Score=695.02 Aligned_cols=316 Identities=37% Similarity=0.629 Sum_probs=296.7
Q ss_pred eeecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHH
Q 014050 95 KLYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILD 174 (431)
Q Consensus 95 ~~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~ 174 (431)
+|.++||+|+.+++|+||+||++ +|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|..++.+|+.+.+
T Consensus 1 ~~~~~GL~gv~~~~s~is~i~~~--~L~YRGy~i~dLa~~~~fEeva~LLl~G~lPt~~el~~f~~~L~~~~~lp~~v~~ 78 (372)
T PRK14034 1 MTVTRGLEGVVATTSSVSSIIDD--TLTYVGYNIDDLAENASFEEVVYLLWHRKLPNKQELAEFKEQLSENAKVPGEIIE 78 (372)
T ss_pred CCCCCCCCCceEeeeEeeccCCC--eEEECCccHHHHhccCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCHHHHH
Confidence 36799999999999999999864 6999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC-CCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCC
Q 014050 175 IIQAMPH-DAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNL 253 (431)
Q Consensus 175 ~~~~~p~-~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~l 253 (431)
+++.||+ ++|||.+|++++++|++++++... .+.+...+++++|+|++|+|+|++||+++|.++++|++++
T Consensus 79 ~l~~~p~~~~hpm~~l~~~vs~l~~~~~~~~~--------~~~~~~~~~a~~liA~~p~i~a~~~r~~~g~~~~~p~~~l 150 (372)
T PRK14034 79 HLKQYDLKKVHPMSVLRTAISMLGLYDEEAEI--------MDEEANYRKAVRLQAKVPTIVAAFSRIRKGLDPVEPRKDL 150 (372)
T ss_pred HHHhCCCcCcCHHHHHHHHHHhhcccCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Confidence 9999998 599999999999999998876531 1233456788999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHH
Q 014050 254 SYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAV 333 (431)
Q Consensus 254 sy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneav 333 (431)
||++|||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||+||+||+||||||+|
T Consensus 151 s~a~nfl~ml~g-----~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aSt~~d~ysav~agi~al~GplHGGA~e~~ 225 (372)
T PRK14034 151 SLAANFLYMLNG-----EEPDEVEVEAFNKALVLHADHELNASTFTARVCVATLSDVYSGITAAIGALKGPLHGGANENV 225 (372)
T ss_pred CHHHHHHHHhcC-----CCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhccCCcHHHHHHHHhcccCCCccCCHHHHH
Confidence 999999999986 489999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCccccc
Q 014050 334 LKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVK 413 (431)
Q Consensus 334 l~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~ 413 (431)
++||++|++++++++||++.+++|++||||||||||+.||||++|+++++++.+..+.++++++++++|+++.+ .
T Consensus 226 ~~~l~~i~~~~~~~~~v~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~a~~~e~~~~~-----~ 300 (372)
T PRK14034 226 MKMLTEIGEEENVESYIHNKLQNKEKIMGFGHRVYRQGDPRAKHLREMSKRLTVLLGEEKWYNMSIKIEEIVTK-----E 300 (372)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCcCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-----c
Confidence 99999999999999999999999999999999999999999999999999997777778999999999998865 5
Q ss_pred CCCcccccchHhhhccc
Q 014050 414 RKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 414 r~LyPNVDfysg~i~~~ 430 (431)
|+||||||||+|+||+.
T Consensus 301 k~l~pNvD~~~a~l~~~ 317 (372)
T PRK14034 301 KGLPPNVDFYSASVYHC 317 (372)
T ss_pred CCCCCChHHHHHHHHHH
Confidence 89999999999999864
No 21
>PRK09569 type I citrate synthase; Reviewed
Probab=100.00 E-value=2.3e-89 Score=708.61 Aligned_cols=317 Identities=28% Similarity=0.445 Sum_probs=290.9
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhc---------CCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAES---------SSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~---------~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~ 167 (431)
+-+||.|+.+++|+||+|||++| |+||||+|+||+++ ++||||+||||||+|||++|++.|+++|.+++.
T Consensus 38 ~~~GL~gv~~~~t~IS~iDg~~G-l~YRGy~I~dL~~~~p~~~~~~~~~fEev~~LLl~G~LPt~~el~~f~~~L~~~~~ 116 (437)
T PRK09569 38 CIGGARDIRSLVTDISYLDPQEG-IRFRGKTIPETFEALPKAPGSEYPTVESFWYFLLTGEVPTQEQVQEVVAEWKKRQN 116 (437)
T ss_pred hcccccCCeecceeceeecCCCc-eeECCccHHHHHhhCccccccCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 45899999999999999999999 79999999999999 499999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCChhHHHHHHHHhh------hhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHH
Q 014050 168 VPQGILDIIQAMPHDAHPMGVLVSAMSAL------SIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRM 241 (431)
Q Consensus 168 lpe~v~~~~~~~p~~ahPM~~L~a~vsaL------s~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~ 241 (431)
+|+.+.+++++||+++|||.+|++++++| +.+|++.... .. .+++...++++||+|++|+|+|++||++
T Consensus 117 lp~~v~~~i~~~p~~~hPM~~L~~~vs~l~~~s~~~~~y~~~~~~--~~---~~~~~~~~~~~rliA~~p~i~A~~yr~~ 191 (437)
T PRK09569 117 VPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFN--KM---DAWEYMYEDASDLVARIPVIAAYIYNLK 191 (437)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHhccccchhhhhccccccc--cc---ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 8888764210 01 1334456789999999999999999999
Q ss_pred c-CCCCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccC-CCchhhhHHHhhccCCCHHHHHHHHhh
Q 014050 242 A-GRPPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHE-MNCSTSAARHLASSGVDVYTALAGAVG 319 (431)
Q Consensus 242 ~-G~~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHe-ln~ST~aaRvvaSt~ad~yaavaAgi~ 319 (431)
. |.++++|++++||++|||+||++ .+..+++||++|||||||| +|+||||+|++|||++|+|+||+|||+
T Consensus 192 ~~g~~~~~p~~~ls~a~NFl~Ml~~--------~~~~~~~l~~~LiL~ADHe~~naSTfaaRvvaSt~ad~ysav~Agi~ 263 (437)
T PRK09569 192 YKGDKQIPSDPELDYGANFAHMIGQ--------PKPYKDVARMYFILHSDHESGNVSAHTTHLVASALSDAYYSYSAGLN 263 (437)
T ss_pred hCCCCCCCCCCCcCHHHHHHHHhcC--------CchHHHHHHHHHhhhhccCCCcchHHHHHHHhccCCCHHHHHHHHHH
Confidence 4 88999999999999999999985 1456899999999999999 799999999999999999999999999
Q ss_pred cccCCcccChHHHHHHHHHHhC--------CCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCC
Q 014050 320 ALYGPLHGGANEAVLKMLNEIG--------TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGR 391 (431)
Q Consensus 320 AL~GPlHGGAneavl~mL~eI~--------~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~ 391 (431)
|||||+||||||+|++||++|. +++++++||++.+++|++||||||||||++||||++|+++|+++. ++
T Consensus 264 aL~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~l~~~~ri~GFGHrvyk~~DPRa~~L~~~a~~~~---~~ 340 (437)
T PRK09569 264 GLAGPLHGLANQEVLGWIQQFQEKLGGEEPTKEQVEQALWDTLNAGQVIPGYGHAVLRKTDPRYTAQREFCLKHL---PD 340 (437)
T ss_pred hccCCccCCchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCchHHHHHHHHHHc---CC
Confidence 9999999999999999998774 557899999999999999999999999999999999999999983 56
Q ss_pred CcHHHHHHHHHHHHhc--CcccccCCCcccccchHhhhccc
Q 014050 392 DPLIEVAVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 392 ~~l~~iA~~Le~~a~~--d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
++++++++++|+++.+ ++||+.|++|||||||||+||+.
T Consensus 341 ~~~~~ia~~~e~v~~~~~~~~~~~~~l~pNVD~~sg~l~~~ 381 (437)
T PRK09569 341 DPLFKLVAMIFEVAPGVLTEHGKTKNPWPNVDAQSGVIQWY 381 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCCCCCChHHHHHHHHHH
Confidence 7999999999998865 78999999999999999999874
No 22
>PRK14032 citrate synthase; Provisional
Probab=100.00 E-value=3.6e-89 Score=710.01 Aligned_cols=342 Identities=33% Similarity=0.520 Sum_probs=308.3
Q ss_pred eEEEeeeeeCCCccceecccccccCCCccceeecCCCc-----ccceeeeeeeeEeCC----------CCeeEEccCCHH
Q 014050 65 KRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDPGYL-----NTAPVRSSICYIDGD----------EGILRYRGYPIE 129 (431)
Q Consensus 65 ~~~~~pi~~~~~~~~~d~~~l~~~~~~~g~~~~dpG~~-----~t~~~~S~IT~Idg~----------~G~L~YRGy~I~ 129 (431)
+.|++||.. +.+++.++++.+ +++||+ |+.+++|+||+|||+ +|+|+||||+|+
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~----------~~~GL~~~~~~gv~~~~t~is~v~~~~~~dg~~~~~~G~L~YRGy~I~ 76 (447)
T PRK14032 8 ELSELCEKN-NKIDPELYDKYD----------VKRGLRNEDGTGVLVGLTNIGDVHGYEIDDGEKIPDEGKLYYRGYDIK 76 (447)
T ss_pred HHHHHHHHc-CCcCHHHHHHhC----------CCcccccCCCCCeEEeeeEEeeeeceeecCCcccCCCCceeECCccHH
Confidence 678999998 889999998886 367777 888888888888873 499999999999
Q ss_pred HHhhcC------CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHH-HHHHHHhCCCCCChhHHHHHHHHhhhhcCCC
Q 014050 130 ELAESS------SFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQG-ILDIIQAMPHDAHPMGVLVSAMSALSIFHPD 202 (431)
Q Consensus 130 eLa~~~------sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~-v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~ 202 (431)
||++++ +||||+||||+|+|||++|++.|.++|.+++.+|+. +.++++++| ++|||.+|++++++|++|+++
T Consensus 77 dLa~~~~~~~~~~FeEv~~LLl~G~LPt~~el~~f~~~L~~~~~lp~~~v~~~i~~~p-~~hPM~~L~a~vsaL~~~~~~ 155 (447)
T PRK14032 77 DLVNGFLKEKRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRELPDGFTRDMILKAP-SKDIMNSLARSVLALYSYDDN 155 (447)
T ss_pred HHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC-CcCHHHHHHHHHHhhhhcCCC
Confidence 999996 999999999999999999999999999999999999 889999999 799999999999999999887
Q ss_pred CCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHH---Hc-CCC--CCCCCCCCCHHHHHHHHHhcCCCCCCCCCHH
Q 014050 203 ANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLR---MA-GRP--PVLPSNNLSYSENFLYMLDSLGNRAYKPNPR 276 (431)
Q Consensus 203 ~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~---~~-G~~--~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~ 276 (431)
... .+++...++++||||++|+|+|++||. .. |.+ +++|++++||++|||+||++. .+|+|.
T Consensus 156 ~~~--------~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~~g~~~~~~~p~~~ls~a~nfl~ml~g~----~~p~~~ 223 (447)
T PRK14032 156 PDD--------TSIDNVLRQSISLIARFPTLAVYAYQAYRHYHDGKSLYIHPPKPELSTAENILYMLRPD----NKYTEL 223 (447)
T ss_pred ccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCHHHHHHHHhccC----CCCCHH
Confidence 531 234455678999999999999999993 44 776 468999999999999999852 278999
Q ss_pred HHHHHHHHHHHhhccC-CCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhC-------CCCCHHH
Q 014050 277 LARVLDVLFILHAEHE-MNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIG-------TVENIPE 348 (431)
Q Consensus 277 ~~~aLd~~LILhADHe-ln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~-------~~~~v~~ 348 (431)
.+++||++|||||||| +|+||||+|++|||++|+|+||+|||+|||||+||||||+|++||++|+ +++++++
T Consensus 224 ~~~~ld~~LiL~ADHg~~naSTfaaRv~aSt~ad~ysavaagi~aL~GplHGGA~e~v~~~l~ei~~~~~~~~s~~~v~~ 303 (447)
T PRK14032 224 EARLLDLALVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKDWEDEDEIAD 303 (447)
T ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHccCCcHHHHHHHHHHhccCccccCHHHHHHHHHHHHHhhccCCCCHHHHHH
Confidence 9999999999999999 8999999999999999999999999999999999999999999999997 5678999
Q ss_pred HHHHHhh-----cCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc---CcccccCCCcccc
Q 014050 349 FIEGVKN-----RKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALS---DEYFVKRKLYPNV 420 (431)
Q Consensus 349 ~i~~~k~-----~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~---d~yf~~r~LyPNV 420 (431)
|++++++ +|+|||||||||||++||||++|+++++++.+..|.+++++++.++|+++.+ ++||..|+|||||
T Consensus 304 ~v~~~l~~~~~~~~~ri~GFGHrvyk~~DPRa~~L~~~~~~l~~~~g~~~~~~~~~~~e~~~~~~~~~~~~~~k~l~pNV 383 (447)
T PRK14032 304 YLTKILNKEAFDKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREEEFNLYEKIEKLAPELIAEERGIYKGVSANV 383 (447)
T ss_pred HHHHHHhccccccCCcccCCCCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcCh
Confidence 9999886 5589999999999999999999999999998888888899999999987653 6789999999999
Q ss_pred cchHhhhccc
Q 014050 421 DFYSGLIYRY 430 (431)
Q Consensus 421 Dfysg~i~~~ 430 (431)
|||||+||+.
T Consensus 384 Dfysa~i~~~ 393 (447)
T PRK14032 384 DFYSGFVYDM 393 (447)
T ss_pred hhHHHHHHHH
Confidence 9999999974
No 23
>PRK12350 citrate synthase 2; Provisional
Probab=100.00 E-value=7.5e-89 Score=688.79 Aligned_cols=298 Identities=32% Similarity=0.485 Sum_probs=261.2
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHH-HHH--HHHhhcCCCCHHHH
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLT-DWE--FAVSQHSAVPQGIL 173 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~-~f~--~~l~~~~~lpe~v~ 173 (431)
|||||+||++|+|+||+|||++|+|+||||||+|||++++||||+||||+|+|||+.++. .|. ..+. ..+..+.
T Consensus 1 ~~~GL~~v~~~~s~Is~idg~~G~L~YRGy~i~dLa~~~sFeEva~LL~~G~LP~~~~~~~~~~~~~~~~---~~~~~~~ 77 (353)
T PRK12350 1 FVPGLEGVVAFETEIAEPDGDGGALRYRGVDIEDLVGRVTFEDVWALLVDGRFGPGLPPAEPFPLPVHLG---DARVDVQ 77 (353)
T ss_pred CCCCCCCceeEeeeCcceeCCCCEEEECCccHHHHhccCCHHHHHHHHHCCCCCCcchhhhccchHHHhh---ccchhhh
Confidence 699999999999999999999999999999999999999999999999999999987544 333 2221 1222222
Q ss_pred HHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcC-CCCCCCCCC
Q 014050 174 DIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAG-RPPVLPSNN 252 (431)
Q Consensus 174 ~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G-~~~~~p~~~ 252 (431)
..+.. .|||..|.+++ +.+ + .++.+||+||+|||+|++||++.| +++++|+++
T Consensus 78 ~~~~~----~~~~~~l~~~~------~~~------------~----~~~~~rliA~~pti~a~~~r~~~g~~~~i~p~~~ 131 (353)
T PRK12350 78 AALAM----LAPVWGFRPLL------DID------------D----LTARLDLARASVMALSAVAQSARGIGQPAVPQRE 131 (353)
T ss_pred hhHHH----hhHHHHHHhhc------CCC------------C----HHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 22222 34665555532 110 1 234689999999999999999999 899999999
Q ss_pred CCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHH
Q 014050 253 LSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEA 332 (431)
Q Consensus 253 lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAnea 332 (431)
+||++|||+||++.. .++|++..+++||++||||||||+||||||+|+++||++|+|+||+|||+|||||+||||||+
T Consensus 132 ls~a~nfl~ml~g~~--~~~p~~~~~~~ld~~LiL~ADHg~naSTfaaRv~aSt~adlysav~agi~aL~GplHGGA~e~ 209 (353)
T PRK12350 132 IDHAATILERFMGRW--RGEPDPAHVAALDAYWVSAAEHGMNASTFTARVIASTGADVAAALSGAIGALSGPLHGGAPAR 209 (353)
T ss_pred CCHHHHHHHHhccCc--cCCCCHHHHHHHHHHHHHhccCCCCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcccChHHH
Confidence 999999999998632 358899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcC--cc
Q 014050 333 VLKMLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSD--EY 410 (431)
Q Consensus 333 vl~mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d--~y 410 (431)
|++||++|++++++++||++++++|+|||||||||||++||||++|+++++++. ++++++++++|+++.++ +|
T Consensus 210 v~~ml~ei~~~~~~~~~v~~~l~~~~ri~GFGHrvYk~~DPRa~~L~~~~~~l~-----~~~~~ia~~le~~~~~~~~~~ 284 (353)
T PRK12350 210 VLPMLDAVERTGDARGWVKGALDRGERLMGFGHRVYRAEDPRARVLRATAKRLG-----APRYEVAEAVEQAALAELRER 284 (353)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHCCCccccCCCCCCCCCCCCHHHHHHHHHHhC-----ChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999973 58999999999999885 79
Q ss_pred cccCCCcccccchHhhhccc
Q 014050 411 FVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 411 f~~r~LyPNVDfysg~i~~~ 430 (431)
|.+|+||||||||||+||+.
T Consensus 285 ~~~r~l~pNVDfysa~v~~~ 304 (353)
T PRK12350 285 RPDRPLETNVEFWAAVLLDF 304 (353)
T ss_pred cCCCCCCcChHHHHHHHHHH
Confidence 99999999999999999964
No 24
>PRK12349 citrate synthase 3; Provisional
Probab=100.00 E-value=2e-87 Score=684.13 Aligned_cols=317 Identities=37% Similarity=0.634 Sum_probs=299.0
Q ss_pred eecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHH
Q 014050 96 LYDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDI 175 (431)
Q Consensus 96 ~~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~ 175 (431)
+|||||.||++|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+||+++|++.|...|..|+.+|+.+.++
T Consensus 4 ~~~~Gl~g~~~~~S~IS~id~~~g~L~YRGydi~dLa~~~sFeeva~LL~~G~LP~~~e~~~f~~~L~~~~~~p~~v~~~ 83 (369)
T PRK12349 4 KFSPGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKTKEYLDIVHLLLEEHLPNEDEKATLEKKLKEEYAVPEGVFNI 83 (369)
T ss_pred cCCCccCCCeeeeeeceeEeCCCCEEEECCccHHHHHccCCHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCH
Q 014050 176 IQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSY 255 (431)
Q Consensus 176 ~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy 255 (431)
++.+|+++|||.+|+++++++++++++... .+......++++|++++|+|+|.+||+..|++++.|+++++|
T Consensus 84 l~~~p~~~~pm~~l~~~vs~l~~~d~~~~~--------~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~~~~~p~~~l~~ 155 (369)
T PRK12349 84 LKALPKETHPMDGLRTGVSALAGYDNDIED--------RSLEVNKSRAYKLLSKVPNIVANSYHILNNEEPIEPLKELSY 155 (369)
T ss_pred HHhCCCCCCHHHHHHHHHHHhcccCccccc--------cCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCCCH
Confidence 999999999999999999999998876521 122334567899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHH
Q 014050 256 SENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLK 335 (431)
Q Consensus 256 ~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~ 335 (431)
++|||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||+||+||+||||||+|++
T Consensus 156 a~nfl~ml~g-----~~p~~~~~~~~~~~Lvl~ADH~lnaStfa~Rv~aSt~ad~~~av~agl~al~GplHGGA~e~~~~ 230 (369)
T PRK12349 156 SANFLYMLTG-----KKPTELEEKIFDRSLVLYSEHEMPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANEAVMY 230 (369)
T ss_pred HHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCcCccHHHHHHHHHHccCccHHHHHHHHHHhccCccccChHHHHHH
Confidence 9999999986 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHhhcCCcccccCCCCC-CCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccC
Q 014050 336 MLNEIGTVENIPEFIEGVKNRKRKMSGFGHRVY-KNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKR 414 (431)
Q Consensus 336 mL~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVY-k~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r 414 (431)
||++|++++++++||++.+++|++||||||||| |.+|||+++|+++++++.+..+..+++++++++|+++.+ .+
T Consensus 231 ~l~~i~~~~~~~~~v~~~l~~~~~i~GFGH~vy~~~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~~-----~~ 305 (369)
T PRK12349 231 MLLEAGTVEKFEELLQKKLYNKEKIMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYTLYEMCEAGEKIMEK-----EK 305 (369)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH-----hc
Confidence 999999999999999999999999999999999 778999999999999998777777899999999998865 58
Q ss_pred CCcccccchHhhhccc
Q 014050 415 KLYPNVDFYSGLIYRY 430 (431)
Q Consensus 415 ~LyPNVDfysg~i~~~ 430 (431)
++|||||||+|+||+.
T Consensus 306 gl~pNvD~~~a~l~~~ 321 (369)
T PRK12349 306 GLYPNLDYYAAPVYWM 321 (369)
T ss_pred CCCCCcHHHHHHHHHH
Confidence 9999999999999864
No 25
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=100.00 E-value=1.6e-87 Score=692.61 Aligned_cols=322 Identities=29% Similarity=0.435 Sum_probs=288.1
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHH---hhcCC------HHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEEL---AESSS------FLEVAYLLMYGNLPSESQLTDWEFAVSQHSA 167 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eL---a~~~s------FeEva~LL~~G~LPt~~ql~~f~~~l~~~~~ 167 (431)
+.+|+.|+.+|.|+||+|||++| |+||||+|+|| +++++ ||||+||||+|+|||++|++.|+.+|.+++.
T Consensus 39 ~~~Glrgv~~~~t~iS~iD~~~G-l~yRGy~I~dl~~~~~~~~~~~~~~fEev~~LLl~G~lPt~~el~~f~~~L~~~~~ 117 (427)
T TIGR01793 39 VYGGMRGMKGLVWETSVLDPEEG-IRFRGLSIPECQKLLPKAKGGEEPLPEGLLWLLLTGKVPSEEQVDALSAEWRARAD 117 (427)
T ss_pred ccCccCCCcccceeceEEcCCCC-eEECCeeHHHHHHHhccCCccccCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 56899999999999999999998 79999999998 45777 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHH--HcCCC
Q 014050 168 VPQGILDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLR--MAGRP 245 (431)
Q Consensus 168 lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~--~~G~~ 245 (431)
+|+.+.++|++||++.|||.+|++++++|+++......-..+.+.-..++...+++++|+||+|+|+|++||+ +.|++
T Consensus 118 lp~~v~~~i~~~p~~~hPM~~L~~~vsaL~~~~~f~~~y~~~~~~~~~~~~~~e~~~~LiAk~P~i~A~~yr~~~~~g~~ 197 (427)
T TIGR01793 118 LPEHVYKTIDALPVTLHPMAQFATAVMALQVESEFAKAYAKGIHKTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQS 197 (427)
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHhcccccchhhhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999987643211000111100123445778999999999999999995 67887
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccC-CCchhhhHHHhhccCCCHHHHHHHHhhcccCC
Q 014050 246 PVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHE-MNCSTSAARHLASSGVDVYTALAGAVGALYGP 324 (431)
Q Consensus 246 ~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHe-ln~ST~aaRvvaSt~ad~yaavaAgi~AL~GP 324 (431)
++|+++++|++|||+||++ |+|..+++||++|||||||| +|+||||+|+||||++|+|+||+|||+||+||
T Consensus 198 -i~p~~~l~~a~Nfl~Ml~~-------~~~~~~~~l~~~LiLhADHeg~NaSTfaarvvaSt~ad~y~~v~Agi~aL~GP 269 (427)
T TIGR01793 198 -ISIDDSKDYSANFAHMLGY-------DSPSFQELMRLYLTIHSDHEGGNVSAHTGHLVGSALSDPYLSFAAALNGLAGP 269 (427)
T ss_pred -cCCCCCccHHHHHHHHhcC-------CCHHHHHHHHHHHhhhcccccccchhHHHHHhhccCCCHHHHHHHHHhhccCC
Confidence 8999999999999999962 68999999999999999999 89999999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHh----C---CCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHH
Q 014050 325 LHGGANEAVLKMLNEI----G---TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEV 397 (431)
Q Consensus 325 lHGGAneavl~mL~eI----~---~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~i 397 (431)
+||||||+|++||++| + +++++++||++.+++|++||||||||||+.||||++|++++.+. .++++++++
T Consensus 270 lHGgAn~~vl~~l~ei~~~ig~~~s~~~v~~~i~~~l~~g~~i~GfGH~vyr~~DPRa~~l~~~~~~~---~~~~~~~~~ 346 (427)
T TIGR01793 270 LHGLANQEVLLWLKSVVSECGENVTKEQLKDYIWKTLNSGKVVPGYGHAVLRKTDPRYICQREFALKH---LPDDPLFKL 346 (427)
T ss_pred ccCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCCCCCCCCCCCCcHHHHHHHHHH---cCCChHHHH
Confidence 9999999999999996 3 55789999999999999999999999999999999999999875 467899999
Q ss_pred HHHHHHHHhc--CcccccCCCcccccchHhhhccc
Q 014050 398 AVALEKAALS--DEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 398 A~~Le~~a~~--d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
+.++|+++.+ +++++.+++|||||||||+||++
T Consensus 347 ~~~~~~~a~~~l~~~~~~~~~~pNVD~~sg~l~~~ 381 (427)
T TIGR01793 347 VSNLYKIVPGILTELGKVKNPWPNVDAHSGVLLQY 381 (427)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 9999998854 67888899999999999999974
No 26
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=100.00 E-value=1.6e-87 Score=683.11 Aligned_cols=318 Identities=49% Similarity=0.819 Sum_probs=282.4
Q ss_pred CCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhC
Q 014050 100 GYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAM 179 (431)
Q Consensus 100 G~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~ 179 (431)
||.||++++|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|++.|..++.+++.+|+.+.+++++|
T Consensus 1 Gl~gv~v~~T~Is~id~~~G~L~YRGy~i~dL~~~~sfeeva~LL~~g~lP~~~el~~f~~~l~~~~~lpe~v~~~i~~l 80 (356)
T PF00285_consen 1 GLRGVPVCETSISFIDGEKGILRYRGYDIEDLAENASFEEVAYLLWYGELPTAEELEEFSAELKERRALPEEVIEVIEAL 80 (356)
T ss_dssp GGTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHSBHHHHHHHHHHSS--BHHHHHHHHHHHHCTTS--HHHHHHHHCS
T ss_pred CCCCCeEeeeeCeEEeCCCCEEEEcCeEHHHHHhcCCHHHHHHHHHhccCCChhhhccchhHHHhhcchhHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHhhhhcCCC-CCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHH
Q 014050 180 PHDAHPMGVLVSAMSALSIFHPD-ANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSEN 258 (431)
Q Consensus 180 p~~ahPM~~L~a~vsaLs~~~~~-~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~N 258 (431)
|+++|||.+|++++++|++++++ .. ..+++...++++++++++|+|+|++|++..|+++++|+++++|++|
T Consensus 81 p~~~~pm~~L~~~vs~l~~~~~~~~~--------~~~~~~~~~~~~~liA~~p~i~a~~~~~~~g~~~~~p~~~~~~~~n 152 (356)
T PF00285_consen 81 PRDAHPMDVLRAAVSALSAFDPDPLY--------DNSPEDVLEDAIRLIAKIPTIVAAIYRHRRGQPPIPPDPDLSYAEN 152 (356)
T ss_dssp TTTS-HHHHHHHHHHHHHHHSTTGTC--------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTSSHHHH
T ss_pred CCCCCchHHHHHHHhhhhhhhhcccc--------ccchhHHHHHHHHHhhcchHHHHHHHHHhCCCCccccccchHHHHH
Confidence 99999999999999999999987 21 1355667889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH
Q 014050 259 FLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN 338 (431)
Q Consensus 259 fL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~ 338 (431)
||+|++.. +.+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+||++||+||+||||+++|++||+
T Consensus 153 ~l~~l~~~---g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~aSt~~~~~~av~agl~al~G~~hgga~~~~~~~l~ 229 (356)
T PF00285_consen 153 FLYMLGVT---GREPDPEEARALDAALVLHADHGLNPSTFAARVAASTGADLYSAVAAGLAALSGPLHGGANEAAMRMLQ 229 (356)
T ss_dssp HHHHHH-H---SSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHHTTT--HHHHHHHHHHHHCSTTTTTHHHHHHHHHH
T ss_pred HHHHhhcc---ccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhhccCcchhHHHHhhhhhccCcccccccHHHHHHHH
Confidence 99999543 246899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcc
Q 014050 339 EIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYP 418 (431)
Q Consensus 339 eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyP 418 (431)
+|++++++++||++.+++|++||||||||||+.|||+++|+++++++.++.+.++++++++++|+++.++ |++|||||
T Consensus 230 ~i~~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~ie~~~~~~--~~~~~l~p 307 (356)
T PF00285_consen 230 EIGSPENVEEYVEERLAKGERIPGFGHRVYKNGDPRAEALLALARELGEEFPDGPLVELAEAIEEAAPED--FKERKLYP 307 (356)
T ss_dssp HHSSGGGHHHHHHHHHHTTSTTTTBCESSSSS--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH--HHHHTESB
T ss_pred HHHhhHHHHHHHHHHHhccccccccCCCcCCCCCCChHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHH--HhhccccC
Confidence 9999999999999999999999999999999999999999999999987777889999999999999886 88899999
Q ss_pred cccchHhhhccc
Q 014050 419 NVDFYSGLIYRY 430 (431)
Q Consensus 419 NVDfysg~i~~~ 430 (431)
|||||+|+||+.
T Consensus 308 Nvd~~~a~l~~~ 319 (356)
T PF00285_consen 308 NVDFYSAALLRA 319 (356)
T ss_dssp -THHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 999999999863
No 27
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=100.00 E-value=4.8e-86 Score=672.56 Aligned_cols=314 Identities=37% Similarity=0.593 Sum_probs=297.3
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
|||+|+.+++|+||+||+++|+|+||||+|+||+++++||||+||||+|+||+++|++.|...+.+++.+|+.+.++++.
T Consensus 1 ~Gl~gv~~~~s~Is~i~~~~g~L~yRG~di~dLa~~~~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~lp~~~~~~~~~ 80 (362)
T cd06111 1 KGLAGVVADTTAISKVMPETNSLTYRGYPVQDLAENCSFEEVAYLLWNGELPNAAQLAEFSQRERSYRRLDRNLLSLIAS 80 (362)
T ss_pred CCCCCceEecccceEEECCCCeEEECCccHHHHHccCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSEN 258 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~N 258 (431)
||+++|||.+|+++++++++++++... .+++...++++++++++|+|+|++|+++.|+++++|+.+++|++|
T Consensus 81 ~p~~~~pm~~l~~~vs~l~~~d~~~~~--------~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~~~~~p~~~ls~a~n 152 (362)
T cd06111 81 LPKNCHPMDVLRTAVSVLGAEDSETDD--------SSPDANLAKAIRLLAQLPTVVAADIRRRKGLDPIPPDSDLGIAEN 152 (362)
T ss_pred CCCCCChHHHHHHHHHHhhccCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCCcCHHHH
Confidence 999999999999999999999876531 233445678899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH
Q 014050 259 FLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN 338 (431)
Q Consensus 259 fL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~ 338 (431)
||+|+++ .+|+|..+++||++||||||||+|+||||+|++|||++|+|+||+|||+||+||+||||||+|++||+
T Consensus 153 fl~m~~g-----~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aSt~ad~~~av~agl~aL~GplHGGA~~~~~~~l~ 227 (362)
T cd06111 153 FLHMCFG-----EVPSPEVVRAFDVSLILYAEHSFNASTFTARVITSTLSDIYSAITGAIGALKGPLHGGANEAVMHMML 227 (362)
T ss_pred HHHHhhC-----CCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHccCCCHHHHHHHHHhhccCccccchHHHHHHHHH
Confidence 9999986 36899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcc
Q 014050 339 EIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYP 418 (431)
Q Consensus 339 eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyP 418 (431)
+|++++++++||++.+++|++||||||||||..|||+++|+++++++.+..+.+++++++++||+++.+ .|++||
T Consensus 228 ei~~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-----~~~l~p 302 (362)
T cd06111 228 EIDDPEKAAQWMLDALARKEKVMGFGHRVYKSGDSRVPTMEKALRRVAAVHDGQKWLAMYDALEDAMVA-----AKGIKP 302 (362)
T ss_pred HhCChhhHHHHHHHHHhcCCceecCCCCCCCCCCchHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHH-----hcCCCC
Confidence 999999999999999999999999999999999999999999999998777778999999999998754 689999
Q ss_pred cccchHhhhccc
Q 014050 419 NVDFYSGLIYRY 430 (431)
Q Consensus 419 NVDfysg~i~~~ 430 (431)
|||||+|+||+.
T Consensus 303 NvD~~~a~l~~~ 314 (362)
T cd06111 303 NLDFPAGPAYYL 314 (362)
T ss_pred ChHHHHHHHHHH
Confidence 999999999864
No 28
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=9.9e-86 Score=670.30 Aligned_cols=317 Identities=52% Similarity=0.826 Sum_probs=301.0
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
|||.||++++|+||+||+++|+|+||||+|+||+++.+||||+||||+|+||+++|++.|...|..++.+|+.+.++++.
T Consensus 1 ~Gl~g~~v~~s~is~id~~~g~l~YRG~~i~dL~~~~~feeva~LL~~G~lP~~~el~~f~~~L~~~~~~p~~v~~~~~~ 80 (358)
T cd06118 1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKSSFEEVAYLLLYGKLPTKEELAEFKKKLASHRALPEHVVEILDL 80 (358)
T ss_pred CCCCCceeeeeeeeEEeCCCCeEEECCccHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSEN 258 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~N 258 (431)
+|++.|||.+|+++++++++++++... .+++...+++++|++++|+|++++|+++.|++++.|+++++|++|
T Consensus 81 ~p~~~~pm~~l~~~~~~l~~~~~~~~~--------~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~~~~~p~~~~~~~~~ 152 (358)
T cd06118 81 LPKNAHPMDVLRTAVSALGSFDPFARD--------KSPEARYEKAIRLIAKLPTIAANIYRNREGLEIIAPDPDLSYAEN 152 (358)
T ss_pred cCCCCChHHHHHHHHHhhhccCCcccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCcccHHHH
Confidence 999999999999999999998876521 234556678899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH
Q 014050 259 FLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN 338 (431)
Q Consensus 259 fL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~ 338 (431)
|++|+++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||+||+||+||||+++|++||+
T Consensus 153 ~~~~~~g-----~~p~~~~~~~l~~~Lvl~aDH~~n~Stfa~R~~aSt~ad~~~av~agl~al~GplHGGA~~~~~~~l~ 227 (358)
T cd06118 153 FLYMLFG-----EEPDPEEAKAMDLALILHADHEGNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKMLL 227 (358)
T ss_pred HHHHhcC-----CCCCHHHHHHHHHHHhhhcCCCCChHHHHHHHHHccCCCHHHHHHHHHHHccCccccChHHHHHHHHH
Confidence 9999986 37899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcc
Q 014050 339 EIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYP 418 (431)
Q Consensus 339 eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyP 418 (431)
+|++++++++||++.+++|++||||||||||++|||+++|+++++++....+.++++++++++|+++.++.|| |++||
T Consensus 228 ~~~~~~~~~~~i~~~l~~~~~i~GfGH~vyk~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~--r~l~p 305 (358)
T cd06118 228 EIGTPENVEAYIWKKLANKRRIMGFGHRVYKTYDPRAKILKELAEELAEEKGDDKLFEIAEELEEIALEVLGE--KGIYP 305 (358)
T ss_pred HhCCchHHHHHHHHHHhcCCeecCCCCCCCCCCCCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC--CCCCc
Confidence 9999999999999999999999999999999999999999999999977667789999999999999998777 89999
Q ss_pred cccchHhhhccc
Q 014050 419 NVDFYSGLIYRY 430 (431)
Q Consensus 419 NVDfysg~i~~~ 430 (431)
|||||+|+||+.
T Consensus 306 Nvd~~~~~l~~~ 317 (358)
T cd06118 306 NVDFYSGVVYKA 317 (358)
T ss_pred ChHHHHHHHHHH
Confidence 999999999863
No 29
>PRK14033 citrate synthase; Provisional
Probab=100.00 E-value=1.5e-85 Score=671.40 Aligned_cols=316 Identities=36% Similarity=0.582 Sum_probs=299.2
Q ss_pred ecCCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHH
Q 014050 97 YDPGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDII 176 (431)
Q Consensus 97 ~dpG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~ 176 (431)
++|||+||++++|+||+||+++|+|+||||+|+||+++++||||+||||+|+||+.+|++.|...+.+++.+|+.+.+++
T Consensus 9 ~~~GL~gv~v~~S~Is~id~~~g~L~yRG~di~dLa~~~sfeeva~LL~~G~lP~~~el~~f~~~l~~~~~~p~~v~~~~ 88 (375)
T PRK14033 9 IKKGLAGVVVDTTAISKVVPETNSLTYRGYPVQDLAARCSFEEVAYLLWNGELPTDAELALFSQRERAYRRLDRSVLSLI 88 (375)
T ss_pred CCCCCCCceEeeccCeEEECCCCeEEECCccHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHH
Q 014050 177 QAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYS 256 (431)
Q Consensus 177 ~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~ 256 (431)
+.||+++|||.+|+++++++++++++... .+.+...+.++++++++|+|+|++|+++.|+++++|+++++|+
T Consensus 89 ~~~p~~~~pm~~l~~~vs~l~~~d~~~~~--------~~~~~~~~~a~~lia~~~~i~a~~~~~~~g~~~~~p~~~~s~a 160 (375)
T PRK14033 89 DKLPTTCHPMDVVRTAVSYLGAEDPEADD--------SSPEANLAKALRLFAVLPTIVAADQRRRRGLDPIAPRSDLGYA 160 (375)
T ss_pred HhCCCCCCHHHHHHHHHHHhccCCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCHH
Confidence 99999999999999999999998876531 2334456788999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHH
Q 014050 257 ENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKM 336 (431)
Q Consensus 257 ~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~m 336 (431)
+|||+|+++ .+|++..+++||++||||||||+|+||||+|++|||++|+|+||+|||+||+||+||||+|+|++|
T Consensus 161 ~nfl~ml~g-----~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aSt~adl~~av~agl~al~GplHGGA~e~~~~~ 235 (375)
T PRK14033 161 ENFLHMCFG-----EVPEPEVVRAFEVSLILYAEHSFNASTFTARVITSTLSDIYSAVTGAIGALKGPLHGGANEAVMHT 235 (375)
T ss_pred HHHHHHHhC-----CCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhccCCCHHHHHHHHHhhccCccccChHHHHHHH
Confidence 999999986 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCC
Q 014050 337 LNEIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKL 416 (431)
Q Consensus 337 L~eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~L 416 (431)
|++|++++++++||++.+++|++||||||||||+.||||++|+++++++.++.+.++++++++++|+++.+ .+++
T Consensus 236 l~ei~~~~~~~~~v~~~~~~~~~l~GFGH~vyk~~DPRa~~L~~~l~~l~~~~~~~~~~~~~~~i~~~~~~-----~~gl 310 (375)
T PRK14033 236 MLEIGDPARAAEWLRDALARKEKVMGFGHRVYKHGDSRVPTMKAALRRVAAVRDGQRWLDIYEALEKAMAE-----ATGI 310 (375)
T ss_pred HHHhCChhHHHHHHHHHHhCCCceecCCCCCCCCCCchHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-----HhCC
Confidence 99999999999999999999999999999999999999999999999997766667899999999998865 5899
Q ss_pred cccccchHhhhccc
Q 014050 417 YPNVDFYSGLIYRY 430 (431)
Q Consensus 417 yPNVDfysg~i~~~ 430 (431)
|||||||+|+||+.
T Consensus 311 ~pNvD~~~a~l~~~ 324 (375)
T PRK14033 311 KPNLDFPAGPAYYL 324 (375)
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999864
No 30
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=100.00 E-value=6.9e-85 Score=665.79 Aligned_cols=314 Identities=42% Similarity=0.691 Sum_probs=297.1
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
|||.|+++|+|+||+||+++|+|+||||||+||+++.+||||+||||+|+||+++|++.|...|..++.+|+.+.++++.
T Consensus 1 ~Gl~g~~~~~t~Is~id~~~g~l~yRG~~i~dL~~~~~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p~~~~~~~~~ 80 (368)
T TIGR01800 1 KGLEGVIADETALSTIDGSEGILTYRGYDIEDLAEHASFEEVAYLLLHGKLPTRSELRKFKTELAKLRGLPDEVIELIEA 80 (368)
T ss_pred CCCCCCeeeeeeceEEECCcceEEECCeeHHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSEN 258 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~N 258 (431)
||+++|||.+|+++++++++++++... .+.....++++++++++|+|+|++|+++.|+++++|+++++|++|
T Consensus 81 ~p~~~~pm~~l~~~ls~l~~~d~~~~~--------~~~~~~~~~a~~lia~~p~i~a~~~~~~~g~~~~~p~~~~~~~~n 152 (368)
T TIGR01800 81 LPAESHPMDALRTAVSYLGALDPEAFG--------HTPEEARDIAIRLIAKLPTIVAYWYRIRNGLEIVAPKEDDSHAAN 152 (368)
T ss_pred CCCCCCcHHHHHHHHHHhhccCccccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCccHHHH
Confidence 999999999999999999999876521 133445677899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH
Q 014050 259 FLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN 338 (431)
Q Consensus 259 fL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~ 338 (431)
||+|+++ .+|++..+++||++||||||||+|+||||+|+++||++|+|+||+|||+|||||+||||++.|++||+
T Consensus 153 ~l~ml~g-----~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aSt~adl~~av~agl~al~Gp~HGGA~~~~~~~l~ 227 (368)
T TIGR01800 153 FLYMLHG-----EEPSKEEEKAMDIALILYAEHEFNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEAVMAMLD 227 (368)
T ss_pred HHHHhcC-----CCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhccCCCHHHHHHHHHhhcCCccccCHHHHHHHHHH
Confidence 9999986 37899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcc
Q 014050 339 EIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYP 418 (431)
Q Consensus 339 eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyP 418 (431)
+|++.+++++||++.+++|++||||||||||+.|||+++|+++++++.+..+.++++++++++|+++.+ .+++||
T Consensus 228 ~i~~~~~~~~~v~~~l~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~p 302 (368)
T TIGR01800 228 EIGDPDKAEAWIRKALENKERIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSKWYEIAERLEDVMEK-----EKGIYP 302 (368)
T ss_pred HhcChHHHHHHHHHHHHCCCccCCCCCCCCCCCCchHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-----hcCCCC
Confidence 999989999999999999999999999999999999999999999987766778999999999999876 589999
Q ss_pred cccchHhhhccc
Q 014050 419 NVDFYSGLIYRY 430 (431)
Q Consensus 419 NVDfysg~i~~~ 430 (431)
|||||+|+||+.
T Consensus 303 NvD~~~a~l~~~ 314 (368)
T TIGR01800 303 NVDFYSGSVYYS 314 (368)
T ss_pred ChHHHHHHHHHH
Confidence 999999999863
No 31
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=100.00 E-value=2e-84 Score=668.67 Aligned_cols=315 Identities=34% Similarity=0.534 Sum_probs=286.0
Q ss_pred ccceeeeeeeeE------eCC----CCeeEEccCCHHHHhhcC------CHHHHHHHHHhCCCCCHHHHHHHHHHHhhcC
Q 014050 103 NTAPVRSSICYI------DGD----EGILRYRGYPIEELAESS------SFLEVAYLLMYGNLPSESQLTDWEFAVSQHS 166 (431)
Q Consensus 103 ~t~~~~S~IT~I------dg~----~G~L~YRGy~I~eLa~~~------sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~ 166 (431)
|+.+|+|+||+| ||+ +|+|+||||||+||++++ +||||+||||+|+|||++|++.|+.+|..++
T Consensus 10 gv~~~~t~is~i~~~~~idg~~~~~~G~L~yRGy~I~dLa~~~p~~~~~sFEev~yLLl~G~LPt~~el~~f~~~L~~~~ 89 (406)
T cd06113 10 GVLAGLTNISDVVGYKIIDGEKVPCPGKLYYRGYDVEDLVNGAQKENRFGFEETAYLLLFGYLPNKEELEEFCEILSSYR 89 (406)
T ss_pred ceEeecceeeeeeeeeecCCcccCCCCeeeECCCcHHHHHhhcccccCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 567999999999 899 999999999999999886 9999999999999999999999999999999
Q ss_pred CCCHHH-HHHHHhCCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHc---
Q 014050 167 AVPQGI-LDIIQAMPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMA--- 242 (431)
Q Consensus 167 ~lpe~v-~~~~~~~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~--- 242 (431)
.+|+.+ ..+++++|. .|||.+|++++++|++++++... .+++...++++||+|++|+|+|++||.++
T Consensus 90 ~lp~~~~~~~i~~~p~-~hpM~~L~a~v~~l~~~~~~~~~--------~~~~~~~~~a~rLiA~~p~i~A~~yr~~~~~~ 160 (406)
T cd06113 90 TLPDNFVEDVILKAPS-KDIMNKLQRSVLALYSYDDKPDD--------ISLENVLRQSIQLIARLPTIAVYAYQAKRHYY 160 (406)
T ss_pred CCCHHHHHHHHHhCCC-cCHHHHHHHHHHhccccCCCccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999986 669999995 99999999999999999877421 23345577889999999999999999743
Q ss_pred -CC--CCCCCCCCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccC-CCchhhhHHHhhccCCCHHHHHHHHh
Q 014050 243 -GR--PPVLPSNNLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHE-MNCSTSAARHLASSGVDVYTALAGAV 318 (431)
Q Consensus 243 -G~--~~~~p~~~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHe-ln~ST~aaRvvaSt~ad~yaavaAgi 318 (431)
|+ ++++|++++||++|||+||++. .+|++..+++||++|||||||| +|+||||+|+++||++|+|+||+|||
T Consensus 161 ~~~~~~~~~p~~~ls~a~nfl~ml~g~----~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt~ad~~~avaagi 236 (406)
T cd06113 161 DGESLYIHHPQPELSTAENILSMLRPD----KKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAI 236 (406)
T ss_pred cCCCccccCCCCCCCHHHHHHHHhccC----CCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHccCCCHHHHHHHHH
Confidence 44 3678999999999999999852 3789999999999999999999 89999999999999999999999999
Q ss_pred hcccCCcccChHHHHHHHHHHhC-------CCCCHHHHHHHHhhcC-----CcccccCCCCCCCCCchHHHHHHHHHHHH
Q 014050 319 GALYGPLHGGANEAVLKMLNEIG-------TVENIPEFIEGVKNRK-----RKMSGFGHRVYKNYDPRAKVIRKLAEEVF 386 (431)
Q Consensus 319 ~AL~GPlHGGAneavl~mL~eI~-------~~~~v~~~i~~~k~~~-----~rL~GFGHrVYk~~DPRA~iL~~~a~el~ 386 (431)
+|||||+||||||+|++||++|+ +++++++|++++++++ ++||||||||||+.||||++|+++++++.
T Consensus 237 ~al~GplHGGA~e~v~~~l~~i~~~~~~~~~~~~v~~~v~~~l~~~~~~~~~~l~GFGHrvyk~~DPRa~~L~~~~~~l~ 316 (406)
T cd06113 237 GSLKGPRHGGANIKVMEMLEDIKENVKDWTDEDEVRAYLRKILNKEAFDKSGLIYGMGHAVYTLSDPRAVVLKKYARSLA 316 (406)
T ss_pred HHccCccccChHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhccccccCceeecCCCCCCCCCCccHHHHHHHHHHHH
Confidence 99999999999999999999996 3678999999998776 49999999999999999999999999998
Q ss_pred HhhCCCcHHHHHHHHHHHHhc---CcccccCCCcccccchHhhhccc
Q 014050 387 SIVGRDPLIEVAVALEKAALS---DEYFVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 387 ~~~g~~~l~~iA~~Le~~a~~---d~yf~~r~LyPNVDfysg~i~~~ 430 (431)
+..|.+++++++.++|+++.+ ++||+.|+||||||||||+||+.
T Consensus 317 ~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~r~l~pNvD~~sa~l~~~ 363 (406)
T cd06113 317 KEKGREEEFALYERIERLAPEVIAEERGIGKTVCANVDFYSGFVYKM 363 (406)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHHHH
Confidence 888888899999999998754 57899999999999999999874
No 32
>cd06110 BSuCS-II_like Bacillus subtilis (Bs) citrate synthase (CS)-II_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains proteins similar to BsCS-II, the major CS of the gram-positive bacterium Bacillus subtilis. A mutation in the gene which encodes BsCS-II (citZ gene) has been described which resulted in a significant loss of CS activity, partial glutamate auxotrophy, and a sporulation deficiency, a
Probab=100.00 E-value=6.9e-84 Score=656.23 Aligned_cols=314 Identities=46% Similarity=0.741 Sum_probs=296.9
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
|||+|+++++|+||+||+++|+|+|||||++||+++.+||||+||||+|+||+++|++.|...|.+++.+|+.+.++++.
T Consensus 1 ~Gl~g~~~~~T~IS~id~~~g~L~yRG~di~dL~~~~~feeva~LL~~G~lP~~~e~~~f~~~l~~~~~~p~~v~~~~~~ 80 (356)
T cd06110 1 KGLEGVIAADSKISYIDGDAGILIYRGYDIHDLAENSTFEEVAYLLWNGELPTAEELDAFKAQLAAERELPAEIIDLLKL 80 (356)
T ss_pred CCCCCCeeeeeeceEEECCCCeEEECCeeHHHHHhcCCHHHHHHHHHcCcCCCHHHHHHHHHhhhhccCCCHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSEN 258 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~N 258 (431)
||+++|||.+|+++++++++++|+... .+++...++++++++++|+|+|++|++..|.++++|+++++|++|
T Consensus 81 ~p~~~~pm~~l~~~v~~l~~~~~~~~~--------~~~~~~~~~a~~lla~~p~i~a~~~~~~~~~~~~~p~~~~~~a~~ 152 (356)
T cd06110 81 LPKDAHPMDVLRTAVSALALYDPEADD--------MSREANLRKAIRLIAKMPTIVAAFHRIRNGLEPVAPDPDLSHAAN 152 (356)
T ss_pred CCCCCCchHHHHHHHHhhhhcCCCccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 999999999999999999998876531 133445677899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH
Q 014050 259 FLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN 338 (431)
Q Consensus 259 fL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~ 338 (431)
||+|+++ .+|++..+++||++||||||||+|+||||+|+++||++|+|+||+|||+||+||+|||||++|++||+
T Consensus 153 ~l~~l~g-----~~p~~~~~~~l~~~Lvl~aDHg~n~Stfa~Rv~aSt~ad~~~av~agl~al~GplHGgA~~~~~~~l~ 227 (356)
T cd06110 153 FLYMLTG-----EKPSEEAARAFDVALILHADHELNASTFAARVVASTLSDMYSAVTAAIGALKGPLHGGANERVMKMLL 227 (356)
T ss_pred HHHHhcC-----CCCCHHHHHHHHHHHHHhccCCCchhHHHHHHHHhcCCCHHHHHHHHHhhcCCCcccCcHHHHHHHHH
Confidence 9999985 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcc
Q 014050 339 EIGTVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYP 418 (431)
Q Consensus 339 eI~~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyP 418 (431)
+|++.+++++||++.+++|++||||||||||+.|||+++|+++++++....+.++++++++++|+++.+ .+++||
T Consensus 228 ~~~~~~~~~~~v~~~~~~~~~i~GfGH~vy~~~DPRa~~L~~~~~~~~~~~~~~~~~~~~~~ie~~~~~-----~~~l~p 302 (356)
T cd06110 228 EIGSVDNVAAYVKDKLANKEKIMGFGHRVYKTGDPRAKHLREMSRRLGKETGEPKWYEMSEAIEQAMRD-----EKGLNP 302 (356)
T ss_pred HhCCHHHHHHHHHHHHhcCCeecCCCCccCCCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----ccCCCc
Confidence 999989999999999999999999999999999999999999999997766778999999999999987 389999
Q ss_pred cccchHhhhccc
Q 014050 419 NVDFYSGLIYRY 430 (431)
Q Consensus 419 NVDfysg~i~~~ 430 (431)
|||||+|+||+.
T Consensus 303 Nvd~~~a~l~~~ 314 (356)
T cd06110 303 NVDFYSASVYYM 314 (356)
T ss_pred ChHHHHHHHHHH
Confidence 999999999863
No 33
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=100.00 E-value=4.7e-77 Score=594.97 Aligned_cols=390 Identities=40% Similarity=0.583 Sum_probs=354.9
Q ss_pred HHhhhcCCCccccccccccccccCCCCCCCCCCCceEEEEeccCCeEEEeeeeeCCCccceecccccccCCCccceeecC
Q 014050 20 LTAHLASTESNQGRLIEPWCTSAQSMVPPPGNLKGSLTVVDERTGKRYQIPVSQEGTVKATDFKKITTGKNDKGLKLYDP 99 (431)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~g~~~~~pi~~~~~~~~~d~~~l~~~~~~~g~~~~dp 99 (431)
+++||..+.. ...+.++|.+. +. ...|+.|++++.+++++|.-|+.++|++..++|+++..+-.+.|...||+
T Consensus 2 ~~~~l~~~~~--~~~~~~~~~~~--~~---~~LK~~l~~~ip~~~~~~k~~~~ehG~vg~v~i~~i~gGmrg~~~~~~e~ 74 (458)
T KOG2617|consen 2 LSRHLSVSQV--LPAIENWCASI--SA---ATLKGNLAIVIPRTGDEYKKFVSEHGTVGNVTLKKIYGGMRGKGLLLWET 74 (458)
T ss_pred chhhhccccc--ccccccccccc--cc---ccHHHHHHhhChhhHHHhhhhHhhcCcccceeHHHhhcccCCCCceeecC
Confidence 4566665522 33345554221 11 12689999999999999999999989999999999976666778889999
Q ss_pred CCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhC
Q 014050 100 GYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAM 179 (431)
Q Consensus 100 G~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~ 179 (431)
++.++. +.|.|+++..++++||++++++.+|. +||+++|||++|++||++|++.|+.+|.+++.+|+.+.++|+++
T Consensus 75 s~Ld~~---~gI~frg~~i~e~q~~lp~~~~~~e~-lpe~~~wLL~tG~vPt~~Q~~~~~~~~a~rs~vP~~v~~~idsm 150 (458)
T KOG2617|consen 75 SVLDPE---EGIRFRGGDIPECQKRLPPAEEGAEP-LPEELFWLLLTGNVPTQSQVAALSFELAQRSAVPQGVLDMIDSM 150 (458)
T ss_pred cccchh---hCeeecCCCHHHHHhhCCCCccCCcC-CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccHHHHHHHHhC
Confidence 999998 99999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHH
Q 014050 180 PHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENF 259 (431)
Q Consensus 180 p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~Nf 259 (431)
|.|.|||+.+.+++++|..+++++++...|.+.++.++.+++++++||||.|+|||.+|++..+.+...|+.+++|++||
T Consensus 151 P~d~HPM~q~~~a~~al~~~s~fa~ay~~G~~k~~yw~~~~ed~l~Liak~p~iAa~iY~~~~~dg~~~~~~~~dys~Nf 230 (458)
T KOG2617|consen 151 PKDLHPMAQLAAAVLALKIFSPFAKAYLRGIGKYKYWQYTYEDCLVLIAKLPTIAAAIYRNIYADGIPKPDPNLDYSANF 230 (458)
T ss_pred CcccchHHHHHHHHHhccccccchhhhhhccchhhcccccHHHHHHHHHhccHHHHHHHHHHhcCCCCCCCcccchhHhH
Confidence 99999999999999999999999999888998888999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH-
Q 014050 260 LYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN- 338 (431)
Q Consensus 260 L~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~- 338 (431)
++|+.. .+|.+++.|+.+++||||||+||+|..+++..+|+-|||-+++||+++|.||+||+|||+|++||.
T Consensus 231 ~~mlg~-------~~~~f~~lmrly~~iHadHE~gnVsAh~~HLvGSaldpyls~aa~~~GLaGPLHGlAnqEvl~~L~~ 303 (458)
T KOG2617|consen 231 ARMLGS-------RQPDFAQLMRLYVGIHADHEGGNVSAHTGHLVGSALDPYLSFAAGMNGLAGPLHGLANQEVLRFLGK 303 (458)
T ss_pred HHHHcc-------CChHHHHHHHHeeeeecccccCcHHHHhccccccccchhHHHHHhhcccccccccCchHHHHHHHHH
Confidence 999964 358999999999999999999888877776644444999999999999999999999999999997
Q ss_pred ---HhC---CCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH--hcCcc
Q 014050 339 ---EIG---TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAA--LSDEY 410 (431)
Q Consensus 339 ---eI~---~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a--~~d~y 410 (431)
||+ +.+++++||++.++.+.++|||||+|||++|||.++++++|.++ +++||++++...|++++ ..++|
T Consensus 304 ~~~Eig~~~s~e~ikeyiw~~ln~~rvvpGyGHavlr~tDPR~~~~~efA~k~---~~~d~l~~l~~~l~~~~p~vl~e~ 380 (458)
T KOG2617|consen 304 LIEEIGKDLSKENIKEYIWKTLNSGRVVPGYGHAVLRKTDPRYKVQREFALKH---LPDDPLFLLVSALYKIAPGVLTEH 380 (458)
T ss_pred hHHHhccccchhhhhHhhHHhhcccccccccccccccCCCchhhHHHHHHHhc---CCCCcchhhhHHHHHhChHHHHHh
Confidence 888 67899999999999999999999999999999999999999987 78899999999999999 66899
Q ss_pred cccCCCcccccchHhhhccc
Q 014050 411 FVKRKLYPNVDFYSGLIYRY 430 (431)
Q Consensus 411 f~~r~LyPNVDfysg~i~~~ 430 (431)
|+.||+|||||||||+++++
T Consensus 381 gk~knp~PNVD~~SGvll~~ 400 (458)
T KOG2617|consen 381 GKVKNPYPNVDAHSGVLLQY 400 (458)
T ss_pred cccCCCCCcHHHHHHHHHHh
Confidence 99999999999999999976
No 34
>cd06101 citrate_synt Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the
Probab=100.00 E-value=9e-70 Score=532.63 Aligned_cols=222 Identities=59% Similarity=0.933 Sum_probs=212.8
Q ss_pred CCCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHh
Q 014050 99 PGYLNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQA 178 (431)
Q Consensus 99 pG~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~ 178 (431)
|||.||++|+|+||+||+++|+|+||||||+||++++||+||+||||+|+||
T Consensus 1 ~gl~~~~~~~t~is~id~~~g~l~yRGy~i~dL~~~~~f~ev~~LL~~G~lP---------------------------- 52 (265)
T cd06101 1 PGLRGVAALESEISVIDGDEGGLRYRGYPIEELAENSSFEEVAYLLLTGELP---------------------------- 52 (265)
T ss_pred CCCCCcceeeeEEEEEeCCCCEEEECCeeHHHHHhcCCHHHHHHHHHcCCCC----------------------------
Confidence 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHH
Q 014050 179 MPHDAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSEN 258 (431)
Q Consensus 179 ~p~~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~N 258 (431)
+|++|
T Consensus 53 ---------------------------------------------------------------------------~~~~n 57 (265)
T cd06101 53 ---------------------------------------------------------------------------SYAEN 57 (265)
T ss_pred ---------------------------------------------------------------------------cHHHH
Confidence 89999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHH
Q 014050 259 FLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLN 338 (431)
Q Consensus 259 fL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~ 338 (431)
||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||++|+||+||||+++|++||+
T Consensus 58 fl~m~~g-----~~p~~~~~~~l~~~Lvl~aDHg~naST~aaRv~aSt~ad~~~av~agl~al~Gp~HGGA~e~~~~~l~ 132 (265)
T cd06101 58 FLYMLGG-----EEPDPEFAKAMDLALILHADHEGNASTFTARVVGSTLSDPYSAIAAAIAALKGPLHGGANEAVLKMLE 132 (265)
T ss_pred HHHHhcC-----CCCCHHHHHHHHHHHhhhcCCCCchHHHHHHHHHccCCcHHHHHHHHHHhCCCCCcCCHHHHHHHHHH
Confidence 9999986 37899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCC--CCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCC
Q 014050 339 EIGTV--ENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKL 416 (431)
Q Consensus 339 eI~~~--~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~L 416 (431)
+|++. ++++++|++.+++|++||||||||||+.|||+++|+++++++....+.++++++++++|+++.++.|| |+|
T Consensus 133 ~i~~~~~~~~~~~v~~~~~~~~~i~GFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~~e~~~~~~~~~--k~l 210 (265)
T cd06101 133 EIGTPKNEPAEAYIRKKLNSKRVLMGFGHRVYKKYDPRATVLKKFAEKLLKEKGLDPMFELAAELEKIAPEVLYE--KKL 210 (265)
T ss_pred HhCccccccHHHHHHHHHhcCCCccCCCCCCCCCCCCChHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhc--cCC
Confidence 99987 89999999999999999999999999999999999999999977767789999999999999887666 899
Q ss_pred cccccchHhhhccc
Q 014050 417 YPNVDFYSGLIYRY 430 (431)
Q Consensus 417 yPNVDfysg~i~~~ 430 (431)
|||||||+|+||+.
T Consensus 211 ~pNvd~~~a~v~~~ 224 (265)
T cd06101 211 YPNVDFYSGVLYKA 224 (265)
T ss_pred CCChHHHHHHHHHH
Confidence 99999999999863
No 35
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00 E-value=1e-58 Score=456.98 Aligned_cols=225 Identities=32% Similarity=0.417 Sum_probs=199.3
Q ss_pred cccceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCC
Q 014050 102 LNTAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPH 181 (431)
Q Consensus 102 ~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~ 181 (431)
.+.++++|+||.|++ |.|+|||||+.||+++.|||||++|||.|++|
T Consensus 16 ~g~~~~~t~It~i~~--~~~~yRG~da~~L~~~~~~e~va~LLw~g~~~------------------------------- 62 (282)
T cd06102 16 WGEPVLESAITLITE--GRLFYRGRDAVELAETATLEEVAALLWDGDEA------------------------------- 62 (282)
T ss_pred cCCceEEeeeEEEeC--CeeEEcCccHHHHHhcCCHHHHHHHHHcCCch-------------------------------
Confidence 456799999999985 56999999999999999999999999999988
Q ss_pred CCChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHH
Q 014050 182 DAHPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLY 261 (431)
Q Consensus 182 ~ahPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ 261 (431)
. .+++ .++++.- + .+..+.++++||++
T Consensus 63 --------~-------------------------------~~l~------~~~~~~~----~----~~~~~~~~~~~~~~ 89 (282)
T cd06102 63 --------A-------------------------------RLLR------LLAAALL----G----AAPSDAPVHRRLAR 89 (282)
T ss_pred --------H-------------------------------HHHH------HHHHHhc----c----CCCCcccHHHHHHH
Confidence 0 0111 1122211 1 23457899999999
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhC
Q 014050 262 MLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIG 341 (431)
Q Consensus 262 ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~ 341 (431)
|+++ ++..+++||++||||||||+|+|||++|+++||++|+|+||+|||++|+||+||||++.|++||++|+
T Consensus 90 ~~~~--------~~~~~~~l~~~LVL~ADHgln~St~aaRv~AStgadl~~avaagl~al~Gp~HGGA~~~a~~~l~e~~ 161 (282)
T cd06102 90 AWGL--------DPAAADLLRRALVLLADHELNASTFAARVAASTGASLYAAVLAGLAALSGPRHGGATARVEALLDEAL 161 (282)
T ss_pred HhcC--------CHHHHHHHHHHHHHHhccCCCcHHHHHHHHhccCCcHHHHHHHHHHhCCCCCccCHHHHHHHHHHHhc
Confidence 9964 56889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCccccc
Q 014050 342 TVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVD 421 (431)
Q Consensus 342 ~~~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyPNVD 421 (431)
+.+++++||++.+++|++||||||||||+.|||+++|+++++++.. +++++++++|+++.+ .++++||||
T Consensus 162 ~~~~~~~~v~~~l~~g~~ipGFGH~vy~~~DPRa~~L~~~~~~~~~-----~~~~~a~~ve~~~~~-----~~gl~pNvD 231 (282)
T cd06102 162 RAGDAEAAVRERLRRGEALPGFGHPLYPDGDPRAAALLAALRPLGP-----AAPPAARALIEAARA-----LTGARPNID 231 (282)
T ss_pred CCccHHHHHHHHHHcCCcccCCCCCCCCCCCccHHHHHHHHHHHhh-----HHHHHHHHHHHHHHH-----HHCCCCChH
Confidence 9899999999999999999999999999999999999999998742 899999999999876 478999999
Q ss_pred chHhhhccc
Q 014050 422 FYSGLIYRY 430 (431)
Q Consensus 422 fysg~i~~~ 430 (431)
||+|+||+.
T Consensus 232 ~a~a~l~~~ 240 (282)
T cd06102 232 FALAALTRA 240 (282)
T ss_pred HHHHHHHHH
Confidence 999999863
No 36
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=100.00 E-value=8.5e-51 Score=387.09 Aligned_cols=169 Identities=58% Similarity=0.936 Sum_probs=160.6
Q ss_pred CHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHH
Q 014050 254 SYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAV 333 (431)
Q Consensus 254 sy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneav 333 (431)
+|++|||+||++ .+|+|..+++||++||||||||+|+||||+|+++||++|+|+||+|||++++||+||||+++|
T Consensus 1 ~~~~~fl~ml~g-----~~p~~~~~~~l~~~lvl~aDHg~~~St~aar~~aSt~ad~~~av~Agl~al~Gp~hGGa~~~a 75 (213)
T cd06099 1 SYAENFLYMLGG-----EEPDPEFARAMDLALILHADHEGNASTFTARVVGSTGSDPYSAIAAAIGALKGPLHGGANEAV 75 (213)
T ss_pred CHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHhcCCCCchhhHHHHHHhccCCCHHHHHHHHHHHcCCCCcCCHHHHH
Confidence 699999999986 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC--CCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCccc
Q 014050 334 LKMLNEIGTV--ENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYF 411 (431)
Q Consensus 334 l~mL~eI~~~--~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf 411 (431)
++||++|++. ++++++|++.+++|++||||||||||+.|||+++|+++++++....+.+++++++++||+++.++.|+
T Consensus 76 ~~~l~e~~~~~~~~~~~~v~~~~~~~~~ipGFGH~vy~~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~~~~~~~ 155 (213)
T cd06099 76 LKMLEEIGTPKNEPAEAYIRKKLESKRVIMGFGHRVYKKYDPRATVLKKFAEELLKEDGDDPMFELAAELEKIAEEVLYE 155 (213)
T ss_pred HHHHHHhCCcccccHHHHHHHHHhCCCcccCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999887 79999999999999999999999999999999999999999976666689999999999999887765
Q ss_pred ccCCCcccccchHhhhcc
Q 014050 412 VKRKLYPNVDFYSGLIYR 429 (431)
Q Consensus 412 ~~r~LyPNVDfysg~i~~ 429 (431)
|+|+||||||+|+||+
T Consensus 156 --r~l~~Nvd~~~a~l~~ 171 (213)
T cd06099 156 --KKLYPNVDFYSGVLYK 171 (213)
T ss_pred --cCCCCChHHHHHHHHH
Confidence 8999999999999986
No 37
>PRK06224 citrate synthase; Provisional
Probab=100.00 E-value=4.5e-49 Score=386.13 Aligned_cols=194 Identities=32% Similarity=0.444 Sum_probs=173.5
Q ss_pred cceeeeeeeeEeCCCCeeEEccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCC
Q 014050 104 TAPVRSSICYIDGDEGILRYRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDA 183 (431)
Q Consensus 104 t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~a 183 (431)
+..++|+||+||+++ |+||||||+||+++.+|+|++||||+|++|+++|++
T Consensus 6 ~~~~~T~i~~~~~~~--l~yrG~~~~dL~~~~sf~e~~~lll~G~lP~~~e~r--------------------------- 56 (263)
T PRK06224 6 TKWWRTSISDVTPEE--IYVRGYDLEDLIGKLSFTDMIFLLLRGRLPTPNEAR--------------------------- 56 (263)
T ss_pred CCCCceeeeeecCCe--eEECCccHHHHhhcCCHHHHHHHHHcCCCCCHHHHH---------------------------
Confidence 347899999999864 999999999999999999999999999999977632
Q ss_pred ChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHH
Q 014050 184 HPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYML 263 (431)
Q Consensus 184 hPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml 263 (431)
T Consensus 57 -------------------------------------------------------------------------------- 56 (263)
T PRK06224 57 -------------------------------------------------------------------------------- 56 (263)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchhhhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCC-
Q 014050 264 DSLGNRAYKPNPRLARVLDVLFILHAEHEMNCSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGT- 342 (431)
Q Consensus 264 ~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~- 342 (431)
+|+..||+|||||+|+|||++|+++||++|+|+||+||++++ ||+||||+++|++||++++.
T Consensus 57 ----------------~f~a~Lv~~adHg~~~St~aar~~ast~~~l~~av~agl~a~-G~~hgGa~~~a~~~l~e~~~~ 119 (263)
T PRK06224 57 ----------------LLDAVLVALVDHGLTPSAAAARMTASGGESLQGAVAAGLLAL-GSVHGGAGEQAAELLQEIAAA 119 (263)
T ss_pred ----------------HHHHHHHHHhccCCCcHHHHHHHHHhcCccHHHHHHHHHhhc-ccccCChhHHHHHHHHHHHhh
Confidence 345567889999999999999999999999999999999999 99999999999999999862
Q ss_pred ------C-CCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCC
Q 014050 343 ------V-ENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRK 415 (431)
Q Consensus 343 ------~-~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~ 415 (431)
. ++++++|++.++++++||||||||||+.|||+++|+++++++. ..+++++++++||+++.+. +.|+
T Consensus 120 ~~~~~~~~~~~~~~v~~~~~~~~~ipGFGH~~y~~~DPRa~~L~~~~~~~~---~~~~~~~~a~~~~~~~~~~---~~~~ 193 (263)
T PRK06224 120 ADAGADLDAAARAIVAEYRAAGKRVPGFGHPLHKPVDPRAPRLLALAREAG---VAGRHCRLAEALEAALAAA---KGKP 193 (263)
T ss_pred ccccccHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCchHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHh---cCCC
Confidence 2 3577899999999999999999999999999999999999873 2358999999999987652 3477
Q ss_pred CcccccchHhhhcc
Q 014050 416 LYPNVDFYSGLIYR 429 (431)
Q Consensus 416 LyPNVDfysg~i~~ 429 (431)
||||||||+|+||+
T Consensus 194 l~~Nvd~~~a~l~~ 207 (263)
T PRK06224 194 LPLNVDGAIAAILA 207 (263)
T ss_pred CCccHHHHHHHHHH
Confidence 99999999999986
No 38
>PLN02522 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=3.7e-43 Score=375.23 Aligned_cols=192 Identities=26% Similarity=0.368 Sum_probs=171.4
Q ss_pred ceeeeeeeeEeCCCCeeEEccCCHHHHhhc-CCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHhCCCCC
Q 014050 105 APVRSSICYIDGDEGILRYRGYPIEELAES-SSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSAVPQGILDIIQAMPHDA 183 (431)
Q Consensus 105 ~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~-~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~lpe~v~~~~~~~p~~a 183 (431)
+.+.|+||..+++ .++||||||+||.++ -+|.+|+||||.|+.|++.
T Consensus 351 ~~~~t~I~~~~~~--~~~~rG~~i~dlig~~~~f~~~~~ll~~g~~p~~~------------------------------ 398 (608)
T PLN02522 351 THIVSTISDDRGE--EPCYAGVPMSSIIEKDYGVGDVISLLWFKRSLPRY------------------------------ 398 (608)
T ss_pred cceEEEeecCCCC--eeEECCccHHHHhccCCCHHHHHHHHHcCCCCCHH------------------------------
Confidence 3678889988875 489999999999994 6999999999988855532
Q ss_pred ChhHHHHHHHHhhhhcCCCCCccccCCCcccchhHhHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHH
Q 014050 184 HPMGVLVSAMSALSIFHPDANPALKGQDIYKSKQVRDKQIARILGKAPTIAAAAYLRMAGRPPVLPSNNLSYSENFLYML 263 (431)
Q Consensus 184 hPM~~L~a~vsaLs~~~~~~~~~~~g~~~~~~~~~~~~~~~rllakiptiaA~~yr~~~G~~~~~p~~~lsy~~NfL~ml 263 (431)
T Consensus 399 -------------------------------------------------------------------------------- 398 (608)
T PLN02522 399 -------------------------------------------------------------------------------- 398 (608)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHhhccCCCchh-hhHHHhhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHhCC
Q 014050 264 DSLGNRAYKPNPRLARVLDVLFILHAEHEMNCST-SAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEIGT 342 (431)
Q Consensus 264 ~~~~~~~~~~~p~~~~aLd~~LILhADHeln~ST-~aaRvvaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI~~ 342 (431)
.+++||++||||||||+|+|| |++|+++||++|+|+||+|||+++ ||+||||+|.|++||++|.+
T Consensus 399 -------------~~~~ld~~Lvl~ADHG~~aSt~~aarv~AStg~dl~savaaGl~al-Gp~hGGA~e~a~~~l~ei~~ 464 (608)
T PLN02522 399 -------------CTKFIEMCIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARYFKDAYD 464 (608)
T ss_pred -------------HHHHHHHHHHHhccCCCCccHHHHHHHhhccCCcHHHHHHHHHHhc-CCcccchHHHHHHHHHHHhc
Confidence 345788899999999999999 589999999999999999999998 99999999999999999987
Q ss_pred C-CCHHHHHHHHhhcCCcccccCCCCC--CCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCccc
Q 014050 343 V-ENIPEFIEGVKNRKRKMSGFGHRVY--KNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPN 419 (431)
Q Consensus 343 ~-~~v~~~i~~~k~~~~rL~GFGHrVY--k~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyPN 419 (431)
. .++++||++.+++|++||||||||| +++|||+++|++++++++ ...+++++|+++|+++.++ +|+|+||
T Consensus 465 ~~~~~~~~V~~~~~~~~~IpGFGHrvy~~~~~DpRa~~L~~~~~~~~---~~~~~~~~a~~vE~~~~~~----~k~L~~N 537 (608)
T PLN02522 465 RGLTPYEFVEGMKKKGIRVPGIGHRIKSRDNRDKRVELLQKYARTHF---PSVKYMEYAVQVETYTLSK----ANNLVLN 537 (608)
T ss_pred cccCHHHHHHHHHhCCCccccCCCCCCCCCCCChhHHHHHHHHHHhc---cccHHHHHHHHHHHHHhhc----cCCCCcC
Confidence 4 5999999999999999999999999 688999999999999874 2458999999999987663 4999999
Q ss_pred ccchHhhhcc
Q 014050 420 VDFYSGLIYR 429 (431)
Q Consensus 420 VDfysg~i~~ 429 (431)
||||+|+||.
T Consensus 538 VDga~a~i~~ 547 (608)
T PLN02522 538 VDGAIGSLFL 547 (608)
T ss_pred cHhHHHHHHH
Confidence 9999999984
No 39
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=100.00 E-value=8.8e-43 Score=334.90 Aligned_cols=166 Identities=32% Similarity=0.454 Sum_probs=155.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCC-CchhhhHHHhhccC-CCHHHHHHHHhhcccCCcccCh
Q 014050 252 NLSYSENFLYMLDSLGNRAYKPNPRLARVLDVLFILHAEHEM-NCSTSAARHLASSG-VDVYTALAGAVGALYGPLHGGA 329 (431)
Q Consensus 252 ~lsy~~NfL~ml~~~~~~~~~~~p~~~~aLd~~LILhADHel-n~ST~aaRvvaSt~-ad~yaavaAgi~AL~GPlHGGA 329 (431)
+.+|.+||++|+++ ..|++...++||.+||+|||||+ |+||+++|+++||+ +|+|+||+||++++ ||+||||
T Consensus 10 ~~sf~e~~~lml~G-----~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~~~~~~~vaag~~a~-G~~hgga 83 (227)
T cd06100 10 KISFGDVLYLLLKG-----RLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGPEDLQSAVAAGLLGI-GDRFGGA 83 (227)
T ss_pred CCCHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCCccHHHHHHHHHhcc-CCcccCh
Confidence 57999999999986 58999999999999999999999 99999999999999 99999999999999 9999999
Q ss_pred HHHHHHHHHHhCCC-----CCHHHHHHHHhhcCCcccccCCCCCCCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014050 330 NEAVLKMLNEIGTV-----ENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKA 404 (431)
Q Consensus 330 neavl~mL~eI~~~-----~~v~~~i~~~k~~~~rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~ 404 (431)
+|++++||++|.+. +++++||++.+++|++||||||||||+.|||+++|+++++++. ...|+++++.+||++
T Consensus 84 ~e~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~DPRa~~L~~~~~~~~---~~~~~~~~~~~~~~~ 160 (227)
T cd06100 84 GEGAARLFKEAVDSGDALDAAAAEFVAEYRAAKKRIPGFGHPVHKNPDPRVPRLLELARELG---PAGPHLDYALAVEKA 160 (227)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCchHHHHHHHHHHhc---cCCHHHHHHHHHHHH
Confidence 99999999999877 7999999999999999999999999999999999999999873 235999999999999
Q ss_pred HhcCcccccCCCcccccchHhhhcc
Q 014050 405 ALSDEYFVKRKLYPNVDFYSGLIYR 429 (431)
Q Consensus 405 a~~d~yf~~r~LyPNVDfysg~i~~ 429 (431)
+.++. .|+|+||||||+|+||+
T Consensus 161 ~~~~~---~~~l~~Nvd~~~a~~~~ 182 (227)
T cd06100 161 LTAAK---GKPLPLNVDGAIAAILL 182 (227)
T ss_pred HHhcc---CCCCcccHHHHHHHHHH
Confidence 87753 36899999999999986
No 40
>KOG1254 consensus ATP-citrate lyase [Energy production and conversion]
Probab=98.77 E-value=8.5e-09 Score=107.23 Aligned_cols=146 Identities=21% Similarity=0.328 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHhhccCCCchhhhHHH-hhccCCCHHHHHHHHhhcccCCcccChHHHHHHHHHHh-CCCCCHHHHHHH
Q 014050 275 PRLARVLDVLFILHAEHEMNCSTSAARH-LASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLNEI-GTVENIPEFIEG 352 (431)
Q Consensus 275 p~~~~aLd~~LILhADHeln~ST~aaRv-vaSt~ad~yaavaAgi~AL~GPlHGGAneavl~mL~eI-~~~~~v~~~i~~ 352 (431)
+-..+.||.++.+.+||+-..|-.---+ .+.+++|++++|++|+.. .|++.|||-....+++..- ...-.+-+|+.+
T Consensus 389 ~Ya~kfie~~~m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLlt-igdRfggald~aaR~f~~ayd~GL~~m~fv~~ 467 (600)
T KOG1254|consen 389 QYARKFIEICTMLTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLT-IGDRFGGALDIAARRFGPAYDKGLAPMRFVGK 467 (600)
T ss_pred HHHHHHHHHHhhccCCCCceeEeccCceEEeccHHHHHHHHHHHHhh-hhhhhcchhhHHHHhcChhhhccCchHHHhhh
Confidence 4455799999999999998887554333 477899999999999999 6999999988888887654 344567899999
Q ss_pred HhhcCCcccccCCCCC--CCCCchHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcCcccccCCCcccccchHhhhc
Q 014050 353 VKNRKRKMSGFGHRVY--KNYDPRAKVIRKLAEEVFSIVGRDPLIEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIY 428 (431)
Q Consensus 353 ~k~~~~rL~GFGHrVY--k~~DPRA~iL~~~a~el~~~~g~~~l~~iA~~Le~~a~~d~yf~~r~LyPNVDfysg~i~ 428 (431)
.++.+.++||-|||+= .|.|-|..++++.+++. ...-|+++.|.++|++..+ +.-+|--|||..-|++|
T Consensus 468 ~~k~~~~V~Gighriksi~n~d~rv~~lk~~~~~~---fp~~~~~~yal~ve~~t~~----k~~nlilnvdg~i~~~f 538 (600)
T KOG1254|consen 468 MRKVPIEVYGIGHRIKSINNPDKRVEILKAFARKN---FPATPLLDYALEVEKITTS----KKPNLILNVDGAIAVLF 538 (600)
T ss_pred hhCCCceecCCcceeeccCCcccchhhHHHHHHhh---CCCchHHHhhhhheeeecc----CCCCEEEeccchhHHHH
Confidence 9999999999999987 35788999999999865 4567999999999999877 46789999999988876
No 41
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=98.23 E-value=2.6e-05 Score=75.44 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=51.3
Q ss_pred cCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhh---cCCCCHHH--HHHHHh-CCCCCChhHHHHHHHHhhh
Q 014050 125 GYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQ---HSAVPQGI--LDIIQA-MPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 125 Gy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~---~~~lpe~v--~~~~~~-~p~~ahPM~~L~a~vsaLs 197 (431)
|||+.||+++.+|+|++||+|+|++|+++|++.|...|.. |....... .++..+ -| ++|-..+.+++++++
T Consensus 1 G~~~~dL~~~~sf~e~~~lml~G~~P~~~e~~~f~~~Lvl~adhg~~~~St~aar~~astg~--~~~~~~vaag~~a~G 77 (227)
T cd06100 1 GYDLSDLIGKISFGDVLYLLLKGRLPTPYEARLLEALLVALADHGPATPSAHAARLTASAGP--EDLQSAVAAGLLGIG 77 (227)
T ss_pred CCCHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHcCC--ccHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999997743 33212222 222222 22 566666777776653
No 42
>cd06099 CS_ACL-C_CCL Citrate synthase (CS), citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) from citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. Some CS proteins function as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. CCL cleaves citryl-CoA (CiCoA) to AcCoA and OAA. ACLs catalyze an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA; they do this in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. The overall CS reaction is thought to proceed through three partial reactions and i
Probab=84.63 E-value=26 Score=33.64 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=39.2
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHH---hhcCCCCHHH--HHHHHhCCCCCChhHHHHHHHHhh
Q 014050 136 SFLEVAYLLMYGNLPSESQLTDWEFAV---SQHSAVPQGI--LDIIQAMPHDAHPMGVLVSAMSAL 196 (431)
Q Consensus 136 sFeEva~LL~~G~LPt~~ql~~f~~~l---~~~~~lpe~v--~~~~~~~p~~ahPM~~L~a~vsaL 196 (431)
+|-|..++++.|++|++++.+.|..-| ..|.. +... ..+..+ ..++|-.-+.++++++
T Consensus 1 ~~~~~fl~ml~g~~p~~~~~~~l~~~lvl~aDHg~-~~St~aar~~aS--t~ad~~~av~Agl~al 63 (213)
T cd06099 1 SYAENFLYMLGGEEPDPEFARAMDLALILHADHEG-NASTFTARVVGS--TGSDPYSAIAAAIGAL 63 (213)
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCC-chhhHHHHHHhc--cCCCHHHHHHHHHHHc
Confidence 588999999999999999988887765 34433 3322 223333 3456767777777666
No 43
>KOG2617 consensus Citrate synthase [Energy production and conversion]
Probab=71.63 E-value=2.2 Score=44.85 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=39.7
Q ss_pred cceecccccccCCCccceeecC---CCcccceeeeeeeeEeCCCCeeEEccCCHHHHhhc
Q 014050 78 KATDFKKITTGKNDKGLKLYDP---GYLNTAPVRSSICYIDGDEGILRYRGYPIEELAES 134 (431)
Q Consensus 78 ~~~d~~~l~~~~~~~g~~~~dp---G~~~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~ 134 (431)
+.-.+++++..+...|-+++|. |-.+....-.+-|++|+++|| +|||++|.|+...
T Consensus 38 ~~~~~k~~~~ehG~vg~v~i~~i~gGmrg~~~~~~e~s~Ld~~~gI-~frg~~i~e~q~~ 96 (458)
T KOG2617|consen 38 TGDEYKKFVSEHGTVGNVTLKKIYGGMRGKGLLLWETSVLDPEEGI-RFRGGDIPECQKR 96 (458)
T ss_pred hHHHhhhhHhhcCcccceeHHHhhcccCCCCceeecCcccchhhCe-eecCCCHHHHHhh
Confidence 3446667765333334445443 777777777777899999987 9999999988754
No 44
>PF09350 DUF1992: Domain of unknown function (DUF1992); InterPro: IPR018961 This entry represents a family of proteins that may have a role in protein folding or as a chaperone. DnaJ is a member of the J-protein family, which are defined by the presence of a J domain that can regulate the activity of 70kDa heat-shock proteins []. Some of the proteins in this entry contain a J domain.
Probab=68.84 E-value=17 Score=29.06 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCC--cccccCCCCCCCCC-chHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHH
Q 014050 346 IPEFIEGVKNRKR--KMSGFGHRVYKNYD-PRAKVIRKLAEEVFSIVGR-DPLIEVAVALEKA 404 (431)
Q Consensus 346 v~~~i~~~k~~~~--rL~GFGHrVYk~~D-PRA~iL~~~a~el~~~~g~-~~l~~iA~~Le~~ 404 (431)
+++.|+++.++|+ .|||.|-++=...+ |....=..++.+++...|- .|++++-.++++.
T Consensus 2 ~e~~I~~A~~~GeFdnLpG~GKPL~~~~~~~~~~~~~~~~~~iLk~~g~lPp~i~l~kei~~l 64 (71)
T PF09350_consen 2 AERRIREAMARGEFDNLPGAGKPLPLDDDNPYWPAEERMANRILKNAGYLPPWIELRKEIEEL 64 (71)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCCCCCcCCCHHHHHHHHhhcccCCCCHHHHHHHHHHHH
Confidence 4667888888886 89999999876555 6665556667777766664 6899999888764
No 45
>cd06111 DsCS_like Cold-active citrate synthase (CS) from an Antarctic bacterial strain DS2-3R (Ds)-like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). 2-methylcitrate synthase (2MCS) catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. DsCS, compared with CS from the hyperthermophile Pyrococcus furiosus (not included in this group), has an increase in the size of surface loops, a higher proline content in the loop regions, a more accessible active site, and a highe
Probab=66.76 E-value=96 Score=32.34 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHhCCCCCHHHHHHHHHHH---hhcCCCC-HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 134 SSSFLEVAYLLMYGNLPSESQLTDWEFAV---SQHSAVP-QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 134 ~~sFeEva~LL~~G~LPt~~ql~~f~~~l---~~~~~lp-e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
+.+|-|..+++++|+.|++++.+.|..-| ..|..=+ ....+++.+- .++|-.-+.+++++|+
T Consensus 146 ~ls~a~nfl~m~~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaR~~aSt--~ad~~~av~agl~aL~ 211 (362)
T cd06111 146 DLGIAENFLHMCFGEVPSPEVVRAFDVSLILYAEHSFNASTFTARVITST--LSDIYSAITGAIGALK 211 (362)
T ss_pred CcCHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhccCCchhHHHHHHHHcc--CCCHHHHHHHHHhhcc
Confidence 35899999999999999999888888755 4443222 2222344442 3466666777766653
No 46
>PRK14033 citrate synthase; Provisional
Probab=61.11 E-value=1.4e+02 Score=31.35 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHhCCCCCHHHHHHHHHHH---hhcCCCC-HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 134 SSSFLEVAYLLMYGNLPSESQLTDWEFAV---SQHSAVP-QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 134 ~~sFeEva~LL~~G~LPt~~ql~~f~~~l---~~~~~lp-e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
+.+|-+..+++++|+.|++.+.+.|...| ..|..=+ ....+++.+ -.++|-+.+.+++++|+
T Consensus 156 ~~s~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~ADHgln~StfaaRv~aS--t~adl~~av~agl~al~ 221 (375)
T PRK14033 156 DLGYAENFLHMCFGEVPEPEVVRAFEVSLILYAEHSFNASTFTARVITS--TLSDIYSAVTGAIGALK 221 (375)
T ss_pred CCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHhc--cCCCHHHHHHHHHhhcc
Confidence 46899999999999999999888887765 3343222 122234433 34567677777777663
No 47
>PRK14034 citrate synthase; Provisional
Probab=59.98 E-value=1.5e+02 Score=31.05 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHhCCCCCHHHHHHHHHHHhh---cCC-CCHHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 134 SSSFLEVAYLLMYGNLPSESQLTDWEFAVSQ---HSA-VPQGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 134 ~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~---~~~-lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
+.+|-|..++++.|+.|++.+.+.|..-|-- |.. .+....+++.+ ..++|.+.+.+++++|.
T Consensus 149 ~ls~a~nfl~ml~g~~p~~~~~~~l~~~Lvl~aDHg~n~ST~aaRv~aS--t~~d~ysav~agi~al~ 214 (372)
T PRK14034 149 DLSLAANFLYMLNGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVA--TLSDVYSGITAAIGALK 214 (372)
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCCccHHHHHHHhc--cCCcHHHHHHHHhcccC
Confidence 4589999999999999999998888876633 322 11222233333 34557777777776654
No 48
>PRK10203 hypothetical protein; Provisional
Probab=59.74 E-value=32 Score=30.56 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCC--cccccCCCCCCCCCc
Q 014050 346 IPEFIEGVKNRKR--KMSGFGHRVYKNYDP 373 (431)
Q Consensus 346 v~~~i~~~k~~~~--rL~GFGHrVYk~~DP 373 (431)
+++.|+++.++|+ .|||.|.|+=...||
T Consensus 8 ~E~~I~eA~~~GefdnLpG~GKPL~~~d~~ 37 (122)
T PRK10203 8 AERHILEAQRKGEFDNLPGSGEPLILDDDS 37 (122)
T ss_pred HHHHHHHHHHcCCccCCCCCCCCCCCccCC
Confidence 4567777877886 999999999766565
No 49
>PRK12349 citrate synthase 3; Provisional
Probab=58.57 E-value=1.6e+02 Score=30.88 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHH---hhcCCCCHH--HHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 135 SSFLEVAYLLMYGNLPSESQLTDWEFAV---SQHSAVPQG--ILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 135 ~sFeEva~LL~~G~LPt~~ql~~f~~~l---~~~~~lpe~--v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
-+|-+..+++++|+.|++.+.+.|...| ..|.. +.. ..+++.+ ..++|-+.+.+++++|.
T Consensus 153 l~~a~nfl~ml~g~~p~~~~~~~~~~~Lvl~ADH~l-naStfa~Rv~aS--t~ad~~~av~agl~al~ 217 (369)
T PRK12349 153 LSYSANFLYMLTGKKPTELEEKIFDRSLVLYSEHEM-PNSTFTARVIAS--TQSDLYGALTGAVASLK 217 (369)
T ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCcCc-cHHHHHHHHHHc--cCccHHHHHHHHHHhcc
Confidence 4899999999999999999988888876 34432 322 2234443 33567777777777663
No 50
>PRK14037 citrate synthase; Provisional
Probab=57.32 E-value=27 Score=36.63 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=45.3
Q ss_pred cCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC--CCHHHH--HHHHhCCCCCChhHHHHHHHHhhh
Q 014050 125 GYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA--VPQGIL--DIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 125 Gy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~--lpe~v~--~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
|.++...-.+.+|-|..++++.|+.|++.+.+.|..-|--|.. ++.... .++.+ ..++|-+-+.+++++|+
T Consensus 140 g~~~~~p~~~~s~a~nfl~ml~G~~p~~~~~~~l~~~Lil~ADHg~naST~aarv~aS--t~ad~ysav~agi~al~ 214 (377)
T PRK14037 140 GNKPRIPEPSDSFAESFLLASFAREPTAEEIKAMDAALILYTDHEVPASTTAALVAAS--TLSDMYSCITAALAALK 214 (377)
T ss_pred CCCCCCCCCCCCHHHHHHHHHhccCCcHHHHHHHHHHHhHhcccCCchHhHHHHHhhc--cCCCHHHHHHHHHHhcc
Confidence 3333333345699999999999999999998888776633321 333222 22232 34567777777777663
No 51
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=54.54 E-value=10 Score=34.43 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.9
Q ss_pred eeEEccCCHHHHhhcCCHHHHHHHH
Q 014050 120 ILRYRGYPIEELAESSSFLEVAYLL 144 (431)
Q Consensus 120 ~L~YRGy~I~eLa~~~sFeEva~LL 144 (431)
.-.||||+++||-+ .+.+|.+-||
T Consensus 14 ~f~yRG~~l~~L~~-m~~~e~~~L~ 37 (143)
T PTZ00096 14 KFTYRGVELEKLLA-LPEEELVELF 37 (143)
T ss_pred eeeeecCCHHHHHc-CCHHHHHHHc
Confidence 46899999999997 6889988887
No 52
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=52.03 E-value=12 Score=33.79 Aligned_cols=24 Identities=54% Similarity=0.762 Sum_probs=20.9
Q ss_pred eeEEccCCHHHHhhcCCHHHHHHHH
Q 014050 120 ILRYRGYPIEELAESSSFLEVAYLL 144 (431)
Q Consensus 120 ~L~YRGy~I~eLa~~~sFeEva~LL 144 (431)
.-.||||+++||-+ .+.+|.+-||
T Consensus 6 ~f~yrG~~l~~L~~-m~~~~~~~l~ 29 (134)
T PRK04038 6 EFTYRGYTLEELQE-MSLEEFAELL 29 (134)
T ss_pred eeeecccCHHHHHc-CCHHHHHHHc
Confidence 46899999999997 7899988887
No 53
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=51.74 E-value=47 Score=32.26 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=41.5
Q ss_pred HHHHHHHHhhcCC--cccccCCCCCCCCCchHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHH
Q 014050 346 IPEFIEGVKNRKR--KMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGR-DPLIEVAVALEKAA 405 (431)
Q Consensus 346 v~~~i~~~k~~~~--rL~GFGHrVYk~~DPRA~iL~~~a~el~~~~g~-~~l~~iA~~Le~~a 405 (431)
+++-|+++.++|+ .|||.|.++=...||=..-=..++..++...|- .|++++-.+|....
T Consensus 93 aE~rI~eAm~~GeFdNLpG~GKPL~ldd~p~vp~e~r~~nRILknaG~lPpwIeL~KEI~~~i 155 (221)
T PLN03085 93 VEQRIWHSMEEGHFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRGQI 155 (221)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3566777777887 999999999655455333333456667766775 67888888887654
No 54
>TIGR01800 cit_synth_II 2-methylcitrate synthase/citrate synthase II. Members of this family are dimeric enzymes with activity as 2-methylcitrate synthase, citrate synthase, or both. Many Gram-negative species have a hexameric citrate synthase, termed citrate synthase I (TIGR01798). Members of this family (TIGR01800) appear as a second citrate synthase isozyme but typically are associated with propionate metabolism and synthesize 2-methylcitrate from propionyl-CoA; citrate synthase activity may be incidental. A number of species, including Thermoplasma acidophilum, Pyrococcus furiosus, and the Antarctic bacterium DS2-3R have a bifunctional member of this family as the only citrate synthase isozyme.
Probab=51.71 E-value=2.7e+02 Score=29.06 Aligned_cols=62 Identities=15% Similarity=0.167 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHhCCCCCHHHHHHHHHHHh---hcCCCC-HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 134 SSSFLEVAYLLMYGNLPSESQLTDWEFAVS---QHSAVP-QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 134 ~~sFeEva~LL~~G~LPt~~ql~~f~~~l~---~~~~lp-e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
..+|.|.++++++|+.|++.+.+.|..-|. .|..-+ ....+++.+ ..++|-+-+.+++++|+
T Consensus 146 ~~~~~~n~l~ml~g~~p~~~~~~~l~~~Lvl~ADHg~n~St~aaRv~aS--t~adl~~av~agl~al~ 211 (368)
T TIGR01800 146 DDSHAANFLYMLHGEEPSKEEEKAMDIALILYAEHEFNASTFAARVAAS--TLSDMYSAITAAIGALK 211 (368)
T ss_pred CccHHHHHHHHhcCCCCCHHHHHHHHHHHhHhccCCCchHHHHHHHHhc--cCCCHHHHHHHHHhhcC
Confidence 348999988899999999998888877663 333211 222344444 34567777777777664
No 55
>PRK14036 citrate synthase; Provisional
Probab=50.67 E-value=2.1e+02 Score=30.07 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=41.1
Q ss_pred cCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC--CC--HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 134 SSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA--VP--QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 134 ~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~--lp--e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
+-+|-+..++++.|+.|++.+.+.|..-|--|.. +. ....+++.+ ..++|...+.+++++|.
T Consensus 151 ~l~~a~nfl~ml~g~~p~~~~~~~l~~~Lil~ADHg~naST~aaRv~aS--t~ad~ys~v~agi~aL~ 216 (377)
T PRK14036 151 DLDYAANFLYMLTEREPDPLAARIFDRCLILHAEHTINASTFSARVTAS--TLTDPYAVIASAVGTLA 216 (377)
T ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHHcc
Confidence 4589999999999999999998888887633321 22 112223332 23567777777776664
No 56
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=44.95 E-value=17 Score=32.81 Aligned_cols=24 Identities=54% Similarity=0.850 Sum_probs=20.5
Q ss_pred eeEEccCCHHHHhhcCCHHHHHHHH
Q 014050 120 ILRYRGYPIEELAESSSFLEVAYLL 144 (431)
Q Consensus 120 ~L~YRGy~I~eLa~~~sFeEva~LL 144 (431)
.-.|||++++||-+ .+.+|.+-||
T Consensus 4 ~f~yrG~~l~~L~~-m~~~e~~~l~ 27 (135)
T TIGR01025 4 EFRYRGYTLEELQD-MSLEELAKLL 27 (135)
T ss_pred eEeecccCHHHHHc-CCHHHHHHHc
Confidence 35799999999996 7889988876
No 57
>PRK14035 citrate synthase; Provisional
Probab=43.33 E-value=47 Score=34.80 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHhCCCCCHHHHHHHHHHHh---hcCCCC-HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 134 SSSFLEVAYLLMYGNLPSESQLTDWEFAVS---QHSAVP-QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 134 ~~sFeEva~LL~~G~LPt~~ql~~f~~~l~---~~~~lp-e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
..+|-|..++++.|+.|++.+.+.|..-|- .|..-+ ....+++.+ ..++|.+.+.+++++|.
T Consensus 149 ~ls~~~nfl~ml~g~~p~~~~~~~l~~~LvL~ADHg~naST~aaRv~aS--t~ad~~sav~Agi~al~ 214 (371)
T PRK14035 149 DLSYAANFLYMLRGELPTDIEVEAFNKALVLHADHELNASTFTARCAVS--SLSDMYSGVVAAVGSLK 214 (371)
T ss_pred CCCHHHHHHHHhccCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 358999999999999999999888887663 333222 222233333 23567777777777664
No 58
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=43.05 E-value=52 Score=34.40 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=47.1
Q ss_pred EccCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC--CC--HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 123 YRGYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA--VP--QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 123 YRGy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~--lp--e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
.||.+..+.-.+-+|-|..++++.|+.|++.+.+.|..-|--+.. +. ....+++.+- .++|...+.+++++|.
T Consensus 139 ~~g~~~~~p~~~ls~~~nfl~ml~g~~p~~~~~~~l~~~Lil~aDHg~n~STfaaRvvaSt--~ad~~s~~~aai~al~ 215 (373)
T cd06112 139 RNGDDPIEPRPDLDYAENFLYMLFGEEPDPATAKILDACLILHAEHTMNASTFSALVTGST--LADPYAVISSAIGTLS 215 (373)
T ss_pred HCCCCCcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcccCCCCchHHHHHHHHhc--CCcHHHHHHHHHHhcc
Confidence 455544444445699999999999999999998888776633321 22 2233344432 3567777777777664
No 59
>PRK14032 citrate synthase; Provisional
Probab=35.89 E-value=1.2e+02 Score=32.54 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=43.0
Q ss_pred hhcCCHHHHHHHHHhCC-CCCHHHHHHHHHHH---hhcCCCC--HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 132 AESSSFLEVAYLLMYGN-LPSESQLTDWEFAV---SQHSAVP--QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 132 a~~~sFeEva~LL~~G~-LPt~~ql~~f~~~l---~~~~~lp--e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
-.+-+|-+..+.+++|+ .|++.+...|..-| ..|...+ ....+++.+- .++|-+-+.+++++|+
T Consensus 201 ~~~ls~a~nfl~ml~g~~~p~~~~~~~ld~~LiL~ADHg~~naSTfaaRv~aSt--~ad~ysavaagi~aL~ 270 (447)
T PRK14032 201 KPELSTAENILYMLRPDNKYTELEARLLDLALVLHAEHGGGNNSTFTTRVVSSS--GTDTYSAIAAAIGSLK 270 (447)
T ss_pred CCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHHHHhccCCCchhHHHHHHHHcc--CCcHHHHHHHHHHhcc
Confidence 33458999998888999 99999888887766 4454222 2233444443 3567777777777763
No 60
>PF13946 DUF4214: Domain of unknown function (DUF4214)
Probab=33.70 E-value=88 Score=24.93 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcC
Q 014050 135 SSFLEVAYLLMYGNLPSESQLTDWEFAVSQHS 166 (431)
Q Consensus 135 ~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~ 166 (431)
..|.+.+|..+.|+-|+.+.++-|...|....
T Consensus 22 ~~fV~~lY~~~LgR~~D~~Gl~yw~~~L~~G~ 53 (75)
T PF13946_consen 22 EAFVNSLYQNILGREPDPEGLAYWLNQLNSGA 53 (75)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 47889999999999999999999999998764
No 61
>PF00285 Citrate_synt: Citrate synthase; InterPro: IPR002020 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site []. The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH []. This entry represents types I and II citrate synthase enzymes, as well as the related enzymes 2-methylcitrate synthase and ATP citrate synthase. 2-methylcitrate (2.3.3.5 from EC) synthase catalyses the conversion of oxaloacetate and propanoyl-CoA into (2R,3S)-2-hydroxybutane-1,2,3-tricarboxylate and coenzyme A. This enzyme is induced during bacterial growth on propionate, while type II hexameric citrate synthase is constitutive []. ATP citrate synthase (2.3.3.8 from EC) (also known as ATP citrate lyase) catalyses the MgATP-dependent, CoA-dependent cleavage of citrate into oxaloacetate and acetyl-CoA, a key step in the reductive tricarboxylic acid pathway of CO2 assimilation used by a variety of autotrophic bacteria and archaea to fix carbon dioxide []. ATP citrate synthase is composed of two distinct subunits. In eukaryotes, ATP citrate synthase is a homotetramer of a single large polypeptide, and is used to produce cytosolic acetyl-CoA from mitochondrial produced citrate [].; GO: 0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, 0044262 cellular carbohydrate metabolic process; PDB: 2C6X_D 3L96_B 1OWB_B 1NXG_A 1K3P_A 1OWC_B 3L97_B 1NXE_A 3L98_A 3L99_A ....
Probab=32.78 E-value=5.7e+02 Score=26.38 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=42.1
Q ss_pred ccCCHHHHhhcCCHHHHHHHHH--hCCCCCHHHHHHHHHHHhhcC--CCCHH--HHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 124 RGYPIEELAESSSFLEVAYLLM--YGNLPSESQLTDWEFAVSQHS--AVPQG--ILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 124 RGy~I~eLa~~~sFeEva~LL~--~G~LPt~~ql~~f~~~l~~~~--~lpe~--v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
+|.+..+--.+.+|-|..+.+| .|+-|++++.+.|..-|--+. .+... ..++..+ ..++|-..+.+++++++
T Consensus 136 ~g~~~~~p~~~~~~~~n~l~~l~~~g~~p~~~~~~~l~~~lvl~aDH~~~~St~aaR~~aS--t~~~~~~av~agl~al~ 213 (356)
T PF00285_consen 136 RGQPPIPPDPDLSYAENFLYMLGVTGREPDPEEARALDAALVLHADHGLNPSTFAARVAAS--TGADLYSAVAAGLAALS 213 (356)
T ss_dssp TTS------TTSSHHHHHHHHHH-HSSB--HHHHHHHHHHHHHHS--SSSHHHHHHHHHHT--TT--HHHHHHHHHHHHC
T ss_pred CCCCccccccchHHHHHHHHHhhccccCCChHHHHHHHHHHHhhcCCCCCccchhhhhhhc--cCcchhHHHHhhhhhcc
Confidence 4555555444579999888888 899999999998888764332 23322 3344443 45678888888877764
No 62
>PRK12351 methylcitrate synthase; Provisional
Probab=32.09 E-value=6.2e+02 Score=26.60 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHhhcCC--CC--HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 135 SSFLEVAYLLMYGNLPSESQLTDWEFAVSQHSA--VP--QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 135 ~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~~~--lp--e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
-+|-|..++++.|+.|++.+.+.|..-|--|.. +. ....++..+ ..++|-.-+.+++++|.
T Consensus 157 ls~a~Nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~naST~aaRvvaS--t~ad~~sav~agi~aL~ 221 (378)
T PRK12351 157 DSIGGHFLHLLHGKKPSESWVKAMHTSLILYAEHEFNASTFTARVIAG--TGSDMYSAITGAIGALR 221 (378)
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccCCchHHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 489999999999999999998888887643332 22 222233333 23566677777777663
No 63
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=30.78 E-value=42 Score=32.30 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=30.3
Q ss_pred cCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 014050 125 GYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEF 160 (431)
Q Consensus 125 Gy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~ 160 (431)
|.+...+|...+|+==+||=+.|.+||.+|...|..
T Consensus 15 gl~ps~~add~~~lRRv~LDL~G~~PT~eEv~~Fl~ 50 (208)
T PF07583_consen 15 GLTPSPPADDATFLRRVYLDLTGLPPTPEEVRAFLA 50 (208)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHh
Confidence 445556677778888899999999999999999986
No 64
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=29.82 E-value=33 Score=35.39 Aligned_cols=19 Identities=32% Similarity=0.829 Sum_probs=16.6
Q ss_pred CCCeeEEccCCHHHHhhcC
Q 014050 117 DEGILRYRGYPIEELAESS 135 (431)
Q Consensus 117 ~~G~L~YRGy~I~eLa~~~ 135 (431)
+.|.|.||||++++.+..|
T Consensus 146 EaGVLlwRgftle~f~~qC 164 (432)
T KOG1182|consen 146 EAGVLLWRGFTLEEFMNQC 164 (432)
T ss_pred cCceEEEcCccHHHHHHHh
Confidence 4799999999999988764
No 65
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=29.40 E-value=2.8e+02 Score=28.36 Aligned_cols=70 Identities=14% Similarity=0.280 Sum_probs=47.1
Q ss_pred ccCCHHHHhhcCCHHHHHHHHH-hCCCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHh-CC---C--CCChhHHHHHHH
Q 014050 124 RGYPIEELAESSSFLEVAYLLM-YGNLPSESQLTDWEFAVSQHSAV--PQGILDIIQA-MP---H--DAHPMGVLVSAM 193 (431)
Q Consensus 124 RGy~I~eLa~~~sFeEva~LL~-~G~LPt~~ql~~f~~~l~~~~~l--pe~v~~~~~~-~p---~--~ahPM~~L~a~v 193 (431)
.|.++.|+..+.+.+|.+.+|+ |||.+.....+...-+-.+...+ ..++.+++.. +| + ..||.....-++
T Consensus 130 ~~~tA~~~ln~~~e~~L~~i~~~yGEe~~a~~IA~~Iv~~R~~~~i~tt~~L~~ii~~~~p~~~~~~~~hpatr~FQAL 208 (305)
T TIGR00006 130 QKLSAAEILNTYSEEDLERILKKYGEEKFSKRIARAIVERRKKKPIQTTKELAELISKAVPGFSKHKSIHPATRVFQAI 208 (305)
T ss_pred CCCCHHHHHhhCCHHHHHHHHHHhcCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHcCccccccCCCcHHHHHHHH
Confidence 4889999999999999999998 69998877665543322222233 2566776644 34 2 348877655444
No 66
>KOG4183 consensus RNA polymerase I 49 kDa subunit [Transcription]
Probab=27.82 E-value=4.6e+02 Score=27.65 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=26.2
Q ss_pred ccceeeeeeeeEeCCCCeeEEccCCHHHHhhcC--CHHHHHHHHHh
Q 014050 103 NTAPVRSSICYIDGDEGILRYRGYPIEELAESS--SFLEVAYLLMY 146 (431)
Q Consensus 103 ~t~~~~S~IT~Idg~~G~L~YRGy~I~eLa~~~--sFeEva~LL~~ 146 (431)
++|.|-..-|.+. .. ||+|++..+. +|.++.++|.+
T Consensus 195 piPp~n~dAt~~e---da-----YplEdIIpk~E~sfl~~~s~l~n 232 (413)
T KOG4183|consen 195 PIPPCNDDATKPE---DA-----YPLEDIIPKAEYSFLQSPSALRN 232 (413)
T ss_pred CCCCcccccCCHH---hc-----ccHHhcCChhhhhhhcChHHHhC
Confidence 5666666666553 22 9999999775 88999998875
No 67
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=27.73 E-value=2.8e+02 Score=28.14 Aligned_cols=67 Identities=21% Similarity=0.381 Sum_probs=46.0
Q ss_pred ccCCHHHHhhcCCHHHHHHHHH-hCCCCCHHHHHHHHHHHhhcC---CC--CHHHHHHHHh-CC---CCCChhHHHHHHH
Q 014050 124 RGYPIEELAESSSFLEVAYLLM-YGNLPSESQLTDWEFAVSQHS---AV--PQGILDIIQA-MP---HDAHPMGVLVSAM 193 (431)
Q Consensus 124 RGy~I~eLa~~~sFeEva~LL~-~G~LPt~~ql~~f~~~l~~~~---~l--pe~v~~~~~~-~p---~~ahPM~~L~a~v 193 (431)
+|.++.|+..+.+.+|.+.+|. ||+.+.....+. .+.+++ .+ ..++.+++.. +| ...||.....-++
T Consensus 128 ~~~sA~~~ln~~~~~~L~~i~~~yGee~~a~~iA~---~Iv~~R~~~~~~tt~~L~~~i~~~~~~~~~~~hpatr~FQAl 204 (296)
T PRK00050 128 QGLTAAEVVNTYSEEELARIFKEYGEERFARRIAR---AIVEARPKKPITTTGELAEIIKSAVPPRRKGIHPATRTFQAL 204 (296)
T ss_pred CCCCHHHHHhhCCHHHHHHHHHHhcCcchHHHHHH---HHHHHhccCCCCCHHHHHHHHHHHcCccCCCCCchHHHHHHH
Confidence 5789999999999999999998 699887665543 332222 23 3567777654 44 3458887766554
No 68
>cd06113 citrate_synt_like_1_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) a carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) h
Probab=27.08 E-value=1.9e+02 Score=30.75 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=43.2
Q ss_pred hhcCCHHHHHHHHHhC-CCCCHHHHHHHHHHH---hhcCCCC--HHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 132 AESSSFLEVAYLLMYG-NLPSESQLTDWEFAV---SQHSAVP--QGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 132 a~~~sFeEva~LL~~G-~LPt~~ql~~f~~~l---~~~~~lp--e~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
-.+-+|-+..++++.| +.|++.+.+.|..-| ..|...+ ....++..+- .++|-.-+.+++++|+
T Consensus 171 ~~~ls~a~nfl~ml~g~~~p~~~~~~~l~~~Lvl~ADHg~~naST~aaRv~aSt--~ad~~~avaagi~al~ 240 (406)
T cd06113 171 QPELSTAENILSMLRPDKKYTELEAKLLDLCLVLHAEHGGGNNSTFTTRVVSSS--GTDTYSAIAAAIGSLK 240 (406)
T ss_pred CCCCCHHHHHHHHhccCCCCCHHHHHHHHHHHhhhhccCCCcchHHHHHHHHcc--CCCHHHHHHHHHHHcc
Confidence 3345999999999999 599999888887766 4444222 2233444443 3567777777777764
No 69
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=25.81 E-value=1.5e+02 Score=31.08 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=44.7
Q ss_pred cCCHHHHhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHhhc---CC-CCHHHHHHHHhCCCCCChhHHHHHHHHhhh
Q 014050 125 GYPIEELAESSSFLEVAYLLMYGNLPSESQLTDWEFAVSQH---SA-VPQGILDIIQAMPHDAHPMGVLVSAMSALS 197 (431)
Q Consensus 125 Gy~I~eLa~~~sFeEva~LL~~G~LPt~~ql~~f~~~l~~~---~~-lpe~v~~~~~~~p~~ahPM~~L~a~vsaLs 197 (431)
|-++...-.+-+|-+..+.+++|+.|++.+.+.|..-|.-+ .. ......+++.+ ..++|-.-+.+++++|.
T Consensus 135 ~~~~~p~~~~~s~a~nfl~ml~g~~p~~~~~~~l~~~LvL~ADH~~n~St~aaRv~aS--t~ad~~sav~agi~al~ 209 (363)
T cd06108 135 GKRIETETDEDSIAGHFLHLLHGKKPGELEIKAMDVSLILYAEHEFNASTFAARVTAS--TLSDFYSAITGAIGTLR 209 (363)
T ss_pred CCccCCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccCCCcchHHHHHHHhc--cCCCHHHHHHHHHHhcc
Confidence 33443323346899999999999999999988888776433 22 11222234433 34567777777777663
No 70
>PF11591 2Fe-2S_Ferredox: Ferredoxin chloroplastic transit peptide; InterPro: IPR023383 This entry represent the N-terminal transit peptide of a number of algal petF genes. The peptide is removed during transit into the chloroplast lumen. The structure of chloroplast ferredoxin in water is unstructured however in a 30:70 molar-ratio mixture of 2,2,2-trifluoroethanol, residues 3 to 13 form an alpha-helix. The rest of the peptide remains unstructured []. This domain is the N-terminal of the [2Fe-2S), ferredoxin, from, C.reinhardtii:, petF., This, protein, catalyses, the, final, reaction, in, a, pathway, which, allows, the, production, of, H(2), from, water, in, the, chloroplast, ]. ; PDB: 1FCT_A.
Probab=25.10 E-value=32 Score=23.22 Aligned_cols=10 Identities=40% Similarity=0.295 Sum_probs=7.9
Q ss_pred hhhhHHHhhc
Q 014050 296 STSAARHLAS 305 (431)
Q Consensus 296 ST~aaRvvaS 305 (431)
|||++|++++
T Consensus 7 ssfaarvaga 16 (34)
T PF11591_consen 7 SSFAARVAGA 16 (34)
T ss_dssp HHHHHHT-TS
T ss_pred HHHHHHHccC
Confidence 8999999876
No 71
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=23.59 E-value=51 Score=22.63 Aligned_cols=27 Identities=33% Similarity=0.526 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCC--CCHHHHHHHHhhcCC
Q 014050 332 AVLKMLNEIGTV--ENIPEFIEGVKNRKR 358 (431)
Q Consensus 332 avl~mL~eI~~~--~~v~~~i~~~k~~~~ 358 (431)
.+-.+|.+|.+. .|.++||+....||+
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~fVQKGG 32 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGFVQKGG 32 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHccC
Confidence 345678888664 689999999988875
No 72
>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=23.28 E-value=1.9e+02 Score=30.05 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHh---hcCCCCH--HHHHHHHhCCCCCChhHHHHHHHHhhhh
Q 014050 135 SSFLEVAYLLMYGNLPSESQLTDWEFAVS---QHSAVPQ--GILDIIQAMPHDAHPMGVLVSAMSALSI 198 (431)
Q Consensus 135 ~sFeEva~LL~~G~LPt~~ql~~f~~~l~---~~~~lpe--~v~~~~~~~p~~ahPM~~L~a~vsaLs~ 198 (431)
-+|-+..+.+++|+.|++.+.+.|..-|- .|.. +. ...+++.+- .++|-..+++++++|+.
T Consensus 147 ~~~~~~~~~~~~g~~p~~~~~~~l~~~Lvl~aDH~~-n~Stfa~R~~aSt--~ad~~~av~agl~al~G 212 (358)
T cd06118 147 LSYAENFLYMLFGEEPDPEEAKAMDLALILHADHEG-NASTFTARVVAST--LSDMYSAIAAAIAALKG 212 (358)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCCCC-ChHHHHHHHHHcc--CCCHHHHHHHHHHHccC
Confidence 47899888889999999998888877663 3333 33 233455553 36788888888887743
No 73
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=34 Score=32.14 Aligned_cols=17 Identities=41% Similarity=0.677 Sum_probs=15.1
Q ss_pred cccCCCcccccchHhhh
Q 014050 411 FVKRKLYPNVDFYSGLI 427 (431)
Q Consensus 411 f~~r~LyPNVDfysg~i 427 (431)
|+.|=.+||||+-||.|
T Consensus 68 FvnKIfHPNIDe~SGsV 84 (189)
T KOG0416|consen 68 FVNKIFHPNIDEASGSV 84 (189)
T ss_pred ceeeccCCCchhccCcc
Confidence 77888899999999976
Done!