Query 014053
Match_columns 431
No_of_seqs 212 out of 1380
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 3.7E-81 7.9E-86 625.4 32.8 325 1-431 87-413 (414)
2 COG0598 CorA Mg2+ and Co2+ tra 99.9 6.3E-25 1.4E-29 221.1 28.6 227 34-430 96-322 (322)
3 TIGR00383 corA magnesium Mg(2+ 99.9 9.1E-25 2E-29 218.5 28.2 185 142-430 134-318 (318)
4 PRK09546 zntB zinc transporter 99.9 6.1E-24 1.3E-28 213.9 29.2 182 143-430 143-324 (324)
5 PRK11085 magnesium/nickel/coba 99.9 2.6E-21 5.7E-26 194.1 28.2 101 320-430 216-316 (316)
6 PF01544 CorA: CorA-like Mg2+ 99.9 2.4E-21 5.1E-26 189.6 22.7 223 37-426 70-292 (292)
7 PRK11085 magnesium/nickel/coba 93.8 8 0.00017 39.4 19.3 33 34-69 88-120 (316)
8 PF07332 DUF1469: Protein of u 90.4 3.2 7E-05 35.6 10.1 54 333-387 8-61 (121)
9 PF01544 CorA: CorA-like Mg2+ 88.8 14 0.00031 35.7 14.5 93 327-425 194-288 (292)
10 PF10267 Tmemb_cc2: Predicted 87.3 42 0.00092 35.3 20.1 28 355-382 336-364 (395)
11 PF02656 DUF202: Domain of unk 82.0 10 0.00022 29.6 7.9 21 409-429 53-73 (73)
12 PF11286 DUF3087: Protein of u 78.2 6 0.00013 36.6 6.1 56 363-430 21-76 (165)
13 TIGR02230 ATPase_gene1 F0F1-AT 78.0 5.2 0.00011 34.0 5.3 54 366-426 45-98 (100)
14 PRK09546 zntB zinc transporter 70.0 1.3E+02 0.0028 30.4 19.1 54 354-415 261-316 (324)
15 PF03904 DUF334: Domain of unk 69.7 43 0.00093 32.6 9.8 15 366-380 154-168 (230)
16 PF10805 DUF2730: Protein of u 65.3 42 0.0009 28.6 8.0 55 157-211 42-100 (106)
17 PRK14584 hmsS hemin storage sy 63.2 29 0.00063 31.8 7.0 28 361-389 16-43 (153)
18 PF10272 Tmpp129: Putative tra 60.8 17 0.00036 37.8 5.6 45 344-388 17-61 (358)
19 TIGR02132 phaR_Bmeg polyhydrox 57.1 67 0.0015 30.2 8.3 58 147-209 76-133 (189)
20 COG3462 Predicted membrane pro 56.3 76 0.0017 27.5 7.9 29 354-384 3-31 (117)
21 PRK15348 type III secretion sy 55.7 16 0.00036 36.0 4.4 19 372-390 190-209 (249)
22 COG0598 CorA Mg2+ and Co2+ tra 53.7 2.5E+02 0.0055 28.3 16.1 94 326-429 221-318 (322)
23 TIGR02976 phageshock_pspB phag 53.4 30 0.00066 27.9 4.8 35 176-214 35-69 (75)
24 PF13273 DUF4064: Protein of u 53.4 30 0.00066 28.7 5.1 27 362-388 4-30 (100)
25 KOG3684 Ca2+-activated K+ chan 53.2 84 0.0018 33.7 9.2 43 178-220 384-426 (489)
26 PF09753 Use1: Membrane fusion 52.3 2.1E+02 0.0046 27.9 11.6 17 409-425 233-249 (251)
27 PF05591 DUF770: Protein of un 51.8 28 0.00061 32.0 5.0 40 181-220 110-152 (157)
28 COG5570 Uncharacterized small 51.2 92 0.002 23.5 6.6 51 148-203 3-53 (57)
29 PF07798 DUF1640: Protein of u 51.0 2E+02 0.0044 26.5 18.4 31 348-383 143-173 (177)
30 PF06667 PspB: Phage shock pro 50.4 36 0.00078 27.5 4.8 36 175-214 34-69 (75)
31 PF11026 DUF2721: Protein of u 49.9 1.8E+02 0.0039 25.5 12.8 72 316-387 12-93 (130)
32 PF07889 DUF1664: Protein of u 49.6 1.1E+02 0.0023 27.2 8.1 33 146-178 39-71 (126)
33 PRK10884 SH3 domain-containing 49.4 2.4E+02 0.0053 27.0 12.1 118 177-430 80-205 (206)
34 PF05478 Prominin: Prominin; 47.4 5E+02 0.011 29.9 19.0 20 370-389 427-446 (806)
35 COG1196 Smc Chromosome segrega 47.1 5.9E+02 0.013 30.7 16.9 6 379-384 514-519 (1163)
36 TIGR03358 VI_chp_5 type VI sec 46.5 30 0.00065 31.9 4.3 41 180-220 110-153 (159)
37 PTZ00370 STEVOR; Provisional 46.4 69 0.0015 32.3 7.0 15 201-215 110-124 (296)
38 PF01102 Glycophorin_A: Glycop 45.8 36 0.00078 30.0 4.5 13 399-411 64-76 (122)
39 PF06570 DUF1129: Protein of u 45.1 60 0.0013 30.7 6.3 30 355-388 142-171 (206)
40 PF04129 Vps52: Vps52 / Sac2 f 45.1 1.9E+02 0.0042 31.3 10.9 69 313-388 30-98 (508)
41 PF11712 Vma12: Endoplasmic re 44.7 1.2E+02 0.0025 27.1 7.8 6 379-384 94-99 (142)
42 PF07106 TBPIP: Tat binding pr 44.1 2.5E+02 0.0054 25.5 10.5 63 138-204 71-137 (169)
43 TIGR01478 STEVOR variant surfa 43.8 78 0.0017 31.9 7.0 14 202-215 112-125 (295)
44 PF13042 DUF3902: Protein of u 43.4 56 0.0012 29.9 5.4 75 345-427 50-125 (161)
45 PF10856 DUF2678: Protein of u 43.3 15 0.00033 32.0 1.7 21 363-383 31-51 (118)
46 PF02439 Adeno_E3_CR2: Adenovi 42.4 56 0.0012 23.0 4.1 20 409-428 12-32 (38)
47 PF04156 IncA: IncA protein; 42.4 48 0.001 30.6 5.1 19 366-384 7-25 (191)
48 PF06570 DUF1129: Protein of u 42.3 2E+02 0.0043 27.1 9.4 19 313-331 24-42 (206)
49 KOG3850 Predicted membrane pro 41.9 4.5E+02 0.0097 27.8 23.7 16 313-328 348-363 (455)
50 PRK13182 racA polar chromosome 41.8 1.3E+02 0.0028 28.1 7.8 60 149-208 84-143 (175)
51 PF11368 DUF3169: Protein of u 41.1 62 0.0013 31.5 5.9 28 355-385 4-31 (248)
52 PF10112 Halogen_Hydrol: 5-bro 40.3 49 0.0011 31.0 4.9 20 367-386 11-30 (199)
53 PF06645 SPC12: Microsomal sig 40.0 26 0.00057 28.2 2.6 24 366-389 13-36 (76)
54 TIGR01834 PHA_synth_III_E poly 39.9 1.7E+02 0.0037 30.0 8.9 53 160-212 266-318 (320)
55 KOG1830 Wiskott Aldrich syndro 39.6 41 0.00089 35.6 4.5 82 143-225 25-106 (518)
56 PRK11020 hypothetical protein; 37.7 1.6E+02 0.0034 25.7 7.0 74 156-229 4-78 (118)
57 PF11712 Vma12: Endoplasmic re 37.6 1.6E+02 0.0035 26.2 7.5 27 362-388 83-110 (142)
58 PRK08456 flagellar motor prote 37.4 61 0.0013 32.0 5.2 43 366-414 4-48 (257)
59 PF05461 ApoL: Apolipoprotein 37.1 3.4E+02 0.0073 27.7 10.6 35 313-347 57-91 (313)
60 COG4949 Uncharacterized membra 36.7 4E+02 0.0087 27.4 10.7 76 333-412 324-402 (424)
61 COG5487 Small integral membran 36.0 1.7E+02 0.0037 22.0 6.0 17 369-385 4-20 (54)
62 PRK02935 hypothetical protein; 36.0 2.9E+02 0.0063 23.9 8.3 22 353-374 6-27 (110)
63 PF08173 YbgT_YccB: Membrane b 35.6 71 0.0015 21.0 3.5 19 400-418 2-20 (28)
64 PF12597 DUF3767: Protein of u 35.5 95 0.0021 27.1 5.5 24 401-428 68-91 (118)
65 PF02060 ISK_Channel: Slow vol 35.1 51 0.0011 29.2 3.7 55 375-429 13-71 (129)
66 COG3402 Uncharacterized conser 34.9 1.4E+02 0.003 27.6 6.6 20 368-387 23-42 (161)
67 PRK09458 pspB phage shock prot 34.5 91 0.002 25.2 4.8 35 176-214 35-69 (75)
68 PF04799 Fzo_mitofusin: fzo-li 34.4 3E+02 0.0064 25.8 8.8 35 136-170 106-140 (171)
69 PF14015 DUF4231: Protein of u 34.2 2.7E+02 0.0058 23.0 9.0 6 380-385 39-44 (112)
70 PF04504 DUF573: Protein of un 34.1 73 0.0016 26.8 4.5 59 140-198 12-71 (98)
71 PF06196 DUF997: Protein of un 33.4 2.6E+02 0.0057 22.7 7.8 27 363-389 6-32 (80)
72 TIGR03141 cytochro_ccmD heme e 33.1 64 0.0014 23.2 3.4 10 419-428 23-32 (45)
73 KOG4643 Uncharacterized coiled 32.6 1.3E+02 0.0029 35.3 7.4 64 146-222 173-236 (1195)
74 TIGR02106 cyd_oper_ybgT cyd op 32.6 86 0.0019 21.0 3.6 17 400-416 2-18 (30)
75 PF06210 DUF1003: Protein of u 32.4 1.1E+02 0.0024 26.4 5.3 22 368-389 3-24 (108)
76 PF04995 CcmD: Heme exporter p 32.1 82 0.0018 22.7 3.8 11 419-429 22-32 (46)
77 PF05597 Phasin: Poly(hydroxya 32.0 3.6E+02 0.0079 24.0 8.7 64 146-209 61-128 (132)
78 PF14316 DUF4381: Domain of un 31.7 72 0.0016 28.4 4.3 10 398-407 17-26 (146)
79 PTZ00382 Variant-specific surf 31.2 12 0.00026 31.5 -0.7 10 418-427 85-94 (96)
80 PF01618 MotA_ExbB: MotA/TolQ/ 31.2 3.6E+02 0.0078 23.6 9.7 11 377-387 76-86 (139)
81 PF11023 DUF2614: Protein of u 30.9 2.6E+02 0.0056 24.4 7.3 23 353-375 5-27 (114)
82 PF10003 DUF2244: Integral mem 30.9 1.1E+02 0.0025 27.1 5.4 28 401-428 34-61 (140)
83 PF04611 AalphaY_MDB: Mating t 30.1 4.1E+02 0.0089 23.9 8.9 58 135-203 59-119 (147)
84 PF06103 DUF948: Bacterial pro 29.8 3E+02 0.0065 22.2 8.1 32 142-173 11-49 (90)
85 TIGR00807 malonate_madL malona 29.7 99 0.0022 27.2 4.6 52 366-431 6-57 (125)
86 PHA03231 glycoprotein BALF4; P 29.7 3.1E+02 0.0068 31.8 9.7 16 369-384 683-698 (829)
87 PRK12911 bifunctional preprote 29.5 2.4E+02 0.0051 34.5 8.9 35 343-384 1327-1361(1403)
88 KOG3176 Predicted alpha-helica 29.1 1.9E+02 0.0041 28.1 6.8 77 130-214 38-114 (223)
89 TIGR01167 LPXTG_anchor LPXTG-m 28.9 60 0.0013 21.3 2.5 9 419-427 24-32 (34)
90 PF05884 ZYG-11_interact: Inte 28.8 4.6E+02 0.01 26.7 9.7 23 368-390 107-129 (299)
91 COG4267 Predicted membrane pro 28.5 3.2E+02 0.0069 29.1 8.7 68 350-428 324-392 (467)
92 PF07889 DUF1664: Protein of u 28.3 3.5E+02 0.0077 23.9 7.9 29 181-209 87-115 (126)
93 PF11945 WASH_WAHD: WAHD domai 27.8 3E+02 0.0066 27.9 8.4 49 160-216 28-76 (297)
94 PRK09110 flagellar motor prote 27.8 60 0.0013 32.6 3.4 43 366-414 2-46 (283)
95 PRK10517 magnesium-transportin 27.7 1.9E+02 0.0042 33.7 7.9 65 356-429 834-901 (902)
96 PF04012 PspA_IM30: PspA/IM30 27.7 5.2E+02 0.011 24.3 15.5 42 185-226 53-95 (221)
97 KOG4603 TBP-1 interacting prot 27.7 3.7E+02 0.008 25.3 8.1 65 146-210 82-150 (201)
98 PRK06926 flagellar motor prote 27.6 64 0.0014 32.3 3.5 43 366-414 7-53 (271)
99 COG3516 Predicted component of 27.5 80 0.0017 29.3 3.8 40 180-219 115-157 (169)
100 PF08317 Spc7: Spc7 kinetochor 27.5 4.1E+02 0.009 26.9 9.5 6 63-68 79-84 (325)
101 PF11348 DUF3150: Protein of u 27.3 2.7E+02 0.0058 27.6 7.8 54 159-212 173-232 (257)
102 PF06703 SPC25: Microsomal sig 27.3 1.9E+02 0.0042 26.1 6.4 24 363-389 29-52 (162)
103 PF05377 FlaC_arch: Flagella a 27.0 1.5E+02 0.0033 22.6 4.6 36 185-220 9-44 (55)
104 PRK14749 hypothetical protein; 26.8 1.7E+02 0.0036 19.6 4.1 18 400-417 2-19 (30)
105 PF12263 DUF3611: Protein of u 26.7 2E+02 0.0044 27.1 6.5 17 362-378 24-40 (183)
106 cd07912 Tweety_N N-terminal do 26.6 4.6E+02 0.01 27.9 9.8 13 417-429 224-236 (418)
107 PF04971 Lysis_S: Lysis protei 26.6 91 0.002 24.7 3.5 15 414-428 45-59 (68)
108 PRK13021 secF preprotein trans 26.6 4.2E+02 0.0091 26.8 9.2 32 343-379 214-245 (297)
109 PF10577 UPF0560: Uncharacteri 26.5 34 0.00074 39.0 1.5 30 400-429 272-302 (807)
110 TIGR01837 PHA_granule_1 poly(h 26.5 3E+02 0.0065 23.8 7.2 21 183-203 96-116 (118)
111 PF09990 DUF2231: Predicted me 26.5 2.5E+02 0.0054 23.3 6.5 26 363-388 5-30 (104)
112 PF11044 TMEMspv1-c74-12: Plec 26.3 1.4E+02 0.0031 21.7 4.1 24 404-427 7-30 (49)
113 PF11177 DUF2964: Protein of u 26.1 2.5E+02 0.0054 21.9 5.7 26 364-389 8-33 (62)
114 PF10267 Tmemb_cc2: Predicted 26.1 8.1E+02 0.017 26.0 17.7 20 326-345 299-318 (395)
115 PF10754 DUF2569: Protein of u 25.8 1.4E+02 0.0031 26.7 5.2 12 419-430 73-84 (149)
116 PF00335 Tetraspannin: Tetrasp 25.8 23 0.0005 32.0 0.0 19 366-384 9-27 (221)
117 PF13140 DUF3980: Domain of un 25.7 1.6E+02 0.0034 23.9 4.6 23 366-388 14-36 (87)
118 PF04799 Fzo_mitofusin: fzo-li 25.6 5.6E+02 0.012 24.0 9.0 31 181-211 135-165 (171)
119 PF05478 Prominin: Prominin; 25.5 1.1E+03 0.023 27.2 20.5 22 191-212 268-289 (806)
120 PRK10548 flagellar biosynthesi 25.4 1.8E+02 0.0039 25.5 5.6 60 147-219 21-81 (121)
121 PF11970 Git3_C: G protein-cou 25.4 1.8E+02 0.004 23.3 5.2 66 357-429 8-74 (76)
122 COG1459 PulF Type II secretory 25.0 5.6E+02 0.012 27.0 10.1 26 366-391 176-201 (397)
123 PF02388 FemAB: FemAB family; 24.9 3.5E+02 0.0075 28.4 8.6 58 149-208 241-298 (406)
124 PF04102 SlyX: SlyX; InterPro 24.8 1.8E+02 0.0039 22.7 4.9 17 185-201 34-50 (69)
125 PF05974 DUF892: Domain of unk 24.8 5E+02 0.011 23.4 8.6 56 157-214 11-66 (159)
126 PF11137 DUF2909: Protein of u 24.8 3.4E+02 0.0073 21.2 6.9 24 366-389 4-27 (63)
127 PRK14756 hypothetical protein; 24.7 61 0.0013 21.3 1.8 18 363-380 4-21 (29)
128 PRK15122 magnesium-transportin 24.5 2.3E+02 0.0049 33.2 7.7 9 422-430 894-903 (903)
129 PF01031 Dynamin_M: Dynamin ce 24.3 2E+02 0.0043 28.5 6.4 80 132-213 185-269 (295)
130 PF03408 Foamy_virus_ENV: Foam 24.2 1.5E+02 0.0032 34.1 5.8 60 326-385 861-939 (981)
131 PF14654 Epiglycanin_C: Mucin, 24.2 1.1E+02 0.0025 25.9 3.8 29 398-426 16-44 (106)
132 PF05992 SbmA_BacA: SbmA/BacA- 24.2 4.1E+02 0.0088 27.3 8.5 17 198-214 32-48 (315)
133 PRK08124 flagellar motor prote 24.1 79 0.0017 31.3 3.4 43 366-414 4-48 (263)
134 PF10661 EssA: WXG100 protein 23.9 1E+02 0.0022 28.0 3.8 12 402-413 117-128 (145)
135 PRK09458 pspB phage shock prot 23.8 1.3E+02 0.0028 24.4 3.9 25 326-350 43-67 (75)
136 PF11857 DUF3377: Domain of un 23.7 52 0.0011 26.5 1.7 25 404-428 34-58 (74)
137 PF12805 FUSC-like: FUSC-like 23.6 2.8E+02 0.006 27.4 7.3 18 372-389 49-66 (284)
138 PF15431 TMEM190: Transmembran 23.3 79 0.0017 27.5 2.8 30 398-429 60-89 (134)
139 PRK14726 bifunctional preprote 23.2 4.9E+02 0.011 30.4 9.9 16 365-380 777-792 (855)
140 KOG1853 LIS1-interacting prote 23.0 7.8E+02 0.017 24.7 14.6 28 142-169 44-71 (333)
141 PRK08990 flagellar motor prote 22.6 85 0.0018 31.0 3.3 43 366-414 4-47 (254)
142 PF13858 DUF4199: Protein of u 22.2 3.5E+02 0.0077 23.9 7.1 25 364-388 4-28 (163)
143 PF10083 DUF2321: Uncharacteri 22.2 6.2E+02 0.013 23.4 8.4 74 135-210 76-150 (158)
144 PF11980 DUF3481: Domain of un 22.1 96 0.0021 25.7 2.9 22 408-429 24-45 (87)
145 PF05545 FixQ: Cbb3-type cytoc 22.1 1.4E+02 0.0031 21.6 3.6 8 416-423 21-28 (49)
146 PF14163 SieB: Superinfection 21.8 2.4E+02 0.0051 25.2 5.8 19 364-382 5-23 (151)
147 PRK07668 hypothetical protein; 21.7 8E+02 0.017 24.3 10.3 21 313-333 24-44 (254)
148 PF04906 Tweety: Tweety; Inte 21.2 3.6E+02 0.0079 28.4 7.9 17 414-430 198-214 (406)
149 PRK09109 motC flagellar motor 21.2 98 0.0021 30.4 3.4 43 366-414 4-48 (246)
150 PF14712 Snapin_Pallidin: Snap 21.1 4.4E+02 0.0096 21.2 9.3 29 181-209 62-90 (92)
151 COG0713 NuoK NADH:ubiquinone o 21.0 4.7E+02 0.01 22.3 6.9 22 355-376 25-49 (100)
152 PRK10573 type IV pilin biogene 21.0 9.2E+02 0.02 24.8 10.8 8 63-70 30-37 (399)
153 KOG4343 bZIP transcription fac 20.8 1.4E+02 0.003 32.8 4.6 78 309-391 300-382 (655)
154 PF06127 DUF962: Protein of un 20.8 4.9E+02 0.011 21.5 7.6 20 343-362 3-22 (95)
155 PF04226 Transgly_assoc: Trans 20.8 3.3E+02 0.0072 19.8 5.3 12 374-385 9-20 (48)
156 PF07086 DUF1352: Protein of u 20.7 4.3E+02 0.0094 25.0 7.5 34 351-385 89-122 (186)
157 PF14235 DUF4337: Domain of un 20.5 6.6E+02 0.014 22.9 9.8 38 313-350 68-105 (157)
158 PF03817 MadL: Malonate transp 20.4 1.8E+02 0.0039 25.7 4.4 52 366-431 6-57 (125)
159 PRK13682 hypothetical protein; 20.4 90 0.002 23.4 2.2 17 369-385 4-20 (51)
160 TIGR01598 holin_phiLC3 holin, 20.4 1.1E+02 0.0024 24.9 3.0 24 365-388 13-36 (78)
161 PF00746 Gram_pos_anchor: Gram 20.3 34 0.00074 23.4 0.0 12 416-427 28-39 (39)
162 PF04341 DUF485: Protein of un 20.3 4.9E+02 0.011 21.3 8.3 20 352-374 10-29 (91)
163 PF15397 DUF4618: Domain of un 20.2 7.4E+02 0.016 24.7 9.2 86 136-223 67-153 (258)
164 KOG0207 Cation transport ATPas 20.2 2.8E+02 0.006 32.5 7.0 40 350-389 837-876 (951)
165 PRK05771 V-type ATP synthase s 20.2 2.6E+02 0.0056 31.2 6.9 33 183-215 215-247 (646)
166 PF06770 Arif-1: Actin-rearran 20.2 1.9E+02 0.004 27.7 4.9 20 366-385 40-59 (196)
167 PF09583 Phageshock_PspG: Phag 20.1 1E+02 0.0022 24.2 2.6 16 374-389 32-47 (65)
168 PF06160 EzrA: Septation ring 20.1 1.2E+03 0.025 25.7 13.7 66 151-216 345-412 (560)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-81 Score=625.40 Aligned_cols=325 Identities=57% Similarity=0.811 Sum_probs=283.5
Q ss_pred CccCCCCCCcccccCCCCCCCceeeecCCeEEeecccceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccc
Q 014053 1 MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEI 80 (431)
Q Consensus 1 ~r~~gL~~RDLR~lDp~~s~pssIlvR~~aIlvnle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~ 80 (431)
|+|.||+|||||++||+++||++|+.|++|||+||||||||||+|+|++||+.++ |.++.+++++|+.........|
T Consensus 87 ~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q-- 163 (414)
T KOG2662|consen 87 MKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQ-- 163 (414)
T ss_pred HHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhcccccccccc--
Confidence 6899999999999999999999999999999999999999999999999999999 9999999999998643321100
Q ss_pred cCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 014053 81 NGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAK 160 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~ 160 (431)
.+. +....+.+||||||||+||+.+|++|++++.
T Consensus 164 ---------------------------~s~-------------------~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~ 197 (414)
T KOG2662|consen 164 ---------------------------LSS-------------------DGGSKDELPFEFRALEVALEAACSFLDSRLS 197 (414)
T ss_pred ---------------------------cCC-------------------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 000 1122578999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCC
Q 014053 161 TLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINER 240 (431)
Q Consensus 161 ~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~ 240 (431)
+||..++++||+|++++++.+|++||.+|++|++|.+||++||++|+++||||+||++||||+|+.+..+
T Consensus 198 ~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~---------- 267 (414)
T KOG2662|consen 198 ELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS---------- 267 (414)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999865431
Q ss_pred CccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcc--cccccccCCCccHHHHHH
Q 014053 241 DDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRT--STTHSAISKHLDVEELEM 318 (431)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~d~~e~E~ 318 (431)
.+|++++++..+...+. ....+-.+...|+||+||
T Consensus 268 -------------------------------------------~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eElEM 304 (414)
T KOG2662|consen 268 -------------------------------------------PESAPTSPTIKAGISRAKSNRASSTVRGEDDVEELEM 304 (414)
T ss_pred -------------------------------------------cccCCCCccccCCccchhhcccchhccccccHHHHHH
Confidence 12233333333222110 000011133789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccC
Q 014053 319 LLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSG 398 (431)
Q Consensus 319 LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~ 398 (431)
|||+||+|+|.+.+++++++++|++|||+||++||++||++|+++|+||++|++++++++|+|+||||+++.+|+ +
T Consensus 305 LLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~----~ 380 (414)
T KOG2662|consen 305 LLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEE----D 380 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhcc----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875 6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q 014053 399 MQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE 431 (431)
Q Consensus 399 ~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl~ 431 (431)
++.|+|++++++++|+++|++.++|+|+||+++
T Consensus 381 ~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~ 413 (414)
T KOG2662|consen 381 HYAFKWVVGITFTLCIVLFVVILGYAKLKRLLG 413 (414)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 799999999999999999999999999999875
No 2
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.3e-25 Score=221.11 Aligned_cols=227 Identities=19% Similarity=0.222 Sum_probs=182.0
Q ss_pred ecccceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 014053 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQF 113 (431)
Q Consensus 34 nle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (431)
..+++..+++.+.++.+..... +.+..++.|+......
T Consensus 96 ~~~~v~~i~~~~~liT~r~~~~---~~~~~vr~r~~~~~~~--------------------------------------- 133 (322)
T COG0598 96 ETEPVSIIVGKRRLITIRHRPL---PAFDRVRERLEKGTLL--------------------------------------- 133 (322)
T ss_pred cceeEEEEEeCCEEEEEecCCC---ccHHHHHHHHhccccc---------------------------------------
Confidence 4678899999999999987443 4566777777642000
Q ss_pred ccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHH
Q 014053 114 EDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLV 193 (431)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~ 193 (431)
.. -|. .++..+++.+...+-.-++.++.....+.+.+..+-+...++++..+++.+.
T Consensus 134 -----------------~~----~~~--~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~ 190 (322)
T COG0598 134 -----------------TR----GAD--ELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLV 190 (322)
T ss_pred -----------------cC----CHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 00 122 5555666666666666668999999999999988888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccc
Q 014053 194 AITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEA 273 (431)
Q Consensus 194 ~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (431)
.+.+.+.+.++++..++.++.+ .+
T Consensus 191 ~lr~~l~~~~~~l~~l~~~~~~----~~---------------------------------------------------- 214 (322)
T COG0598 191 YLRRALAPLRDVLLRLARRPLD----WL---------------------------------------------------- 214 (322)
T ss_pred HHHHHHHhHHHHHHHHHhcCcc----cC----------------------------------------------------
Confidence 9999999999999999988655 10
Q ss_pred cccccccccccccccccccccCCCCcccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 014053 274 DFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLD 353 (431)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld 353 (431)
.+|....++.-+.++.++.+.++.+++.+..+.+.+...++
T Consensus 215 ---------------------------------------~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is 255 (322)
T COG0598 215 ---------------------------------------SEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLIN 255 (322)
T ss_pred ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 02223444555558889999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014053 354 DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 354 ~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl 430 (431)
+++|++||+ ||++|++|+|+|+|||+|||||+++|+ .++++|||++.++++ ++++++++||||||||
T Consensus 256 ~~~N~imk~---LTi~s~iflPpTlIagiyGMNf~~mPe---l~~~~Gy~~~l~~m~----~~~~~~~~~frrk~Wl 322 (322)
T COG0598 256 NNQNEIMKI---LTIVSTIFLPPTLITGFYGMNFKGMPE---LDWPYGYPIALILML----LLALLLYLYFRRKGWL 322 (322)
T ss_pred HHHHHHHHH---HHHHHHHHHhhHHHHcccccCCCCCcC---CCCcccHHHHHHHHH----HHHHHHHHHHHhcCcC
Confidence 999999999 999999999999999999999999886 468999988766554 4455789999999997
No 3
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=99.94 E-value=9.1e-25 Score=218.53 Aligned_cols=185 Identities=19% Similarity=0.252 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhh
Q 014053 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYL 221 (431)
Q Consensus 142 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~L 221 (431)
.+|-.+++.++..+...++.++.++..+.+.+.++.....++++..+|+.+..+.+-+...+++++.+...+.- . .+
T Consensus 134 ~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~-~--~~ 210 (318)
T TIGR00383 134 YLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHL-P--IQ 210 (318)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-c--cC
Confidence 56777777777777777899999999999888777777899999999999999999999999999998764320 0 00
Q ss_pred hHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCccc
Q 014053 222 TEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTS 301 (431)
Q Consensus 222 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (431)
+
T Consensus 211 ~------------------------------------------------------------------------------- 211 (318)
T TIGR00383 211 T------------------------------------------------------------------------------- 211 (318)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014053 302 TTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAG 381 (431)
Q Consensus 302 s~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaG 381 (431)
++....+..-..+++.+.+.++.+++.++.+.+.+...+++++|++||+ ||++|++|+|+|+|||
T Consensus 212 ------------~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~---LTvvt~IflP~t~IaG 276 (318)
T TIGR00383 212 ------------EEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKI---LTVVSTIFIPLTFIAG 276 (318)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 1112233344447888899999999999999999999999999999999 9999999999999999
Q ss_pred HccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014053 382 IFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 382 iFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl 430 (431)
+|||||+++|+. ++++||+++++++++ +++++++||||||||
T Consensus 277 iyGMNf~~mP~l---~~~~gy~~~l~~m~~----i~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 277 IYGMNFKFMPEL---NWKYGYPAVLIVMAV----IALGPLIYFRRKGWL 318 (318)
T ss_pred HHhCCcccCccc---cchhHHHHHHHHHHH----HHHHHHHHHHHcCCC
Confidence 999999998874 588888887765554 445789999999997
No 4
>PRK09546 zntB zinc transporter; Reviewed
Probab=99.93 E-value=6.1e-24 Score=213.88 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhh
Q 014053 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLT 222 (431)
Q Consensus 143 aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt 222 (431)
+|-.+++.++..+..-++.++..+..+.+.+..+.++ .++++..+|+.+..+++.+.+.++++.++...+.. .++
T Consensus 143 ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~~-~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~----~~~ 217 (324)
T PRK09546 143 WLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQIP-PRGELALLRKQLIVMRRYMAPQRDVFARLASERLP----WMS 217 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccC
Confidence 5556777777777777788999998888877654222 46799999999999999999999999999864311 111
Q ss_pred HHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcccc
Q 014053 223 EKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTST 302 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 302 (431)
+.
T Consensus 218 ~~------------------------------------------------------------------------------ 219 (324)
T PRK09546 218 DD------------------------------------------------------------------------------ 219 (324)
T ss_pred hH------------------------------------------------------------------------------
Confidence 10
Q ss_pred cccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014053 303 THSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGI 382 (431)
Q Consensus 303 ~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGi 382 (431)
....++....++..+.+.++.+++.+..+.+.+...++++.|++||+ ||++|++|.|+|+|||+
T Consensus 220 -------------~~~~l~Dv~d~~~~~~~~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~---Ltilt~IflPlT~IaGi 283 (324)
T PRK09546 220 -------------DRRRMQDIADRLGRGLDDLDACIARTAVLADEIASVMAEAMNRRTYT---MSLMAMVFLPTTFLTGL 283 (324)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 11222333346667778888889999999999999999999999999 99999999999999999
Q ss_pred ccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014053 383 FGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 383 FGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl 430 (431)
|||||+++||. ++++|||+++++++ ++++++++||||||||
T Consensus 284 yGMNf~~mPel---~~~~gy~~~l~im~----~i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 284 FGVNLGGIPGG---GWPFGFSIFCLLLV----VLIGGVAWWLKRSKWL 324 (324)
T ss_pred hccccCCCCCc---CCcchHHHHHHHHH----HHHHHHHHHHHhcccC
Confidence 99999998874 68888887665544 4555789999999997
No 5
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=99.90 E-value=2.6e-21 Score=194.14 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCC
Q 014053 320 LEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGM 399 (431)
Q Consensus 320 LE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~ 399 (431)
+..++++++.+...++.+++.+..+.|.+...+++++|++||+ ||++|++|+|+|+|||+|||||+++|+ .+++
T Consensus 216 ~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~---lTv~s~if~pptliagiyGMNf~~mP~---~~~~ 289 (316)
T PRK11085 216 AREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKI---FSVVSVVFLPPTLVASSYGMNFEFMPE---LKWS 289 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHhhcccccCCCCC---CCCc
Confidence 3678889999999999999999999999999999999999999 999999999999999999999998886 3578
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014053 400 QEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 400 ~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl 430 (431)
+||+++++++++ +++++++||||||||
T Consensus 290 ~g~~~~l~~~~~----~~~~~~~~f~rk~Wl 316 (316)
T PRK11085 290 FGYPGAIILMIL----AGLAPYLYFKRKNWL 316 (316)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHcccC
Confidence 888776655443 445789999999997
No 6
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=99.89 E-value=2.4e-21 Score=189.57 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=171.7
Q ss_pred cceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 014053 37 HIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDE 116 (431)
Q Consensus 37 ~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (431)
+|..+++.+.++.+...+. ++++++..|+....
T Consensus 70 ~l~~~~~~~~lit~~~~~~---~~~~~~~~~~~~~~-------------------------------------------- 102 (292)
T PF01544_consen 70 PLSFILGDNFLITVHRDPL---PFIDELRERLESRN-------------------------------------------- 102 (292)
T ss_dssp EEEEEEETTEEEEEESSSS---HCHHHHHHHHHSTT--------------------------------------------
T ss_pred eEEEEEecceEEEEECCCC---hHHHHHHHHhhccC--------------------------------------------
Confidence 5789999999999987663 66777878876100
Q ss_pred hhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHH
Q 014053 117 NEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAIT 196 (431)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~ 196 (431)
....-|+ .++..++..++..+...+..++..+..+.+.+.+......+.++..+|+.+..+.
T Consensus 103 ----------------~~~~~~~--~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~ 164 (292)
T PF01544_consen 103 ----------------ERPSSPE--DLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLR 164 (292)
T ss_dssp ----------------CSCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHH
T ss_pred ----------------CCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 0011244 8899999999999999999999999999999977788899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCcccccc
Q 014053 197 GRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQ 276 (431)
Q Consensus 197 ~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (431)
+.+...++++.+++..+..
T Consensus 165 ~~l~~~~~~l~~~~~~~~~------------------------------------------------------------- 183 (292)
T PF01544_consen 165 RSLSPLREVLQRLLRRDDS------------------------------------------------------------- 183 (292)
T ss_dssp HHHHHHHHHHHHHHHCCCS-------------------------------------------------------------
T ss_pred HHhhhHHHHHHHHHHhhhh-------------------------------------------------------------
Confidence 9999999999877761110
Q ss_pred ccccccccccccccccccCCCCcccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhh
Q 014053 277 NTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ 356 (431)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~r 356 (431)
..-.++....++....++..+.+.++.+++.++++.+.+...++.++
T Consensus 184 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (292)
T PF01544_consen 184 ---------------------------------PFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQ 230 (292)
T ss_dssp ---------------------------------TTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ---------------------------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00001123346666778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 357 NHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKH 426 (431)
Q Consensus 357 N~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~kr 426 (431)
|++||+ ||++|++|.|+|+|||+|||||.++|+. +++++++++ +++++|+++++++++||||
T Consensus 231 n~~m~~---LT~~t~iflPlt~i~g~fGMN~~~~p~~---~~~~g~~~~--~~~~~~~~~~~~~~~~~kR 292 (292)
T PF01544_consen 231 NRVMKV---LTIVTAIFLPLTFITGIFGMNFKGMPEL---DWPYGYFFV--IILGLMILVAILLYWWFKR 292 (292)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTTSTTS-SS---SS---SSSS-SHHH----HHHHHHHHHHHHCCTTS
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhhCCccCCCcc---CCccHHHHH--HHHHHHHHHHHHHHHheeC
Confidence 999999 9999999999999999999999987763 466545444 2344556666677888875
No 7
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=93.84 E-value=8 Score=39.40 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=24.8
Q ss_pred ecccceeeeecCeEEEecCCCCCchhHHHHHHHHhh
Q 014053 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRIL 69 (431)
Q Consensus 34 nle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~ 69 (431)
..+.|..|++.+.++.+-..++ +.+..+++|+.
T Consensus 88 ~~~~v~fil~~~~LvTvr~~~~---~~f~~~~~r~~ 120 (316)
T PRK11085 88 GNSTVAFTIRDGRLFTLREREL---PAFRLYRMRAR 120 (316)
T ss_pred cceeEEEEEECCEEEEEecCCc---chHHHHHHHHH
Confidence 4466788899999998887766 45577777775
No 8
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=90.42 E-value=3.2 Score=35.63 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccC
Q 014053 333 KLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNI 387 (431)
Q Consensus 333 ~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~ 387 (431)
-.+.+.+.+++--++....+..+..+..+. +.+.++..+++..+++...++..+
T Consensus 8 l~~~~~~lv~~~i~La~~E~~~~~~~~~~~-~~~~~~a~vl~~~~l~~l~~al~~ 61 (121)
T PF07332_consen 8 LVDDLSTLVRTRIELAKAELREKARRLGRG-LALLVLAAVLALLALLFLLVALVF 61 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666777777777766653 445566666666666665555554
No 9
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=88.78 E-value=14 Score=35.72 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHH-HHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHH
Q 014053 327 IDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL-LQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWT 405 (431)
Q Consensus 327 id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~l-mk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v 405 (431)
++.+.++++.+.+.++.+.+.+....+...|.+ .+.+-.+..+|++.+++.-++=+-|. | .|-| .+.++-.|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~-f-GMN~----~~~p~~~~~ 267 (292)
T PF01544_consen 194 LRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGI-F-GMNF----KGMPELDWP 267 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS-T-TS-S----S---SSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hCCc----cCCCccCCc
Confidence 566677777777777777777766665444432 11222255555555554333344443 1 1212 123333344
Q ss_pred HHHH-HHHHHHHHHHHHHHHH
Q 014053 406 VGGG-ATGSIFLYVVAIAWCK 425 (431)
Q Consensus 406 ~~~~-~~~~v~i~~~~~~y~k 425 (431)
++.. ++++++++++.++.+.
T Consensus 268 ~g~~~~~~~~~~~~~~~~~~~ 288 (292)
T PF01544_consen 268 YGYFFVIILGLMILVAILLYW 288 (292)
T ss_dssp S-SHHH--HHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 4433 3445555555555443
No 10
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=87.26 E-value=42 Score=35.34 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=18.1
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHhH
Q 014053 355 KQNHLLQM-GVMLTTATLVVSAFVVVAGI 382 (431)
Q Consensus 355 ~rN~lmk~-~l~LTi~t~i~~~~tlIaGi 382 (431)
.|--+.++ ++.|+++++++...+.++++
T Consensus 336 ~r~~l~k~inllL~l~~vlLv~vSt~~~~ 364 (395)
T PF10267_consen 336 ARALLGKLINLLLTLLTVLLVFVSTVANC 364 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34344444 67788888887777766654
No 11
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=81.99 E-value=10 Score=29.64 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCc
Q 014053 409 GATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 409 ~~~~~v~i~~~~~~y~krk~w 429 (431)
++++.++++.+.+-|++++||
T Consensus 53 ~~~~~~~~~~~~~ry~~~~~~ 73 (73)
T PF02656_consen 53 IVLGLLTLIYGIYRYRRRRRW 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334445556678889999998
No 12
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=78.21 E-value=6 Score=36.60 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014053 363 GVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 363 ~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl 430 (431)
-+..+.+.++++.+++...+|| .+ +..-|+|=.+|+++++++ .++++..+|.+.|+
T Consensus 21 ~~v~~lai~sl~~s~llI~lFg----~~-------~~~nf~~NllGVil~~~~-~~~~l~~~k~~p~m 76 (165)
T PF11286_consen 21 ACVASLAILSLAFSQLLIALFG----GE-------SGGNFHWNLLGVILGLLL-TSALLRQLKTHPFM 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC----CC-------CCCceeeeHHHHHHHHHH-HHHHHHHHccChHH
Confidence 3456666677777888999999 21 223377766655554443 34445578888775
No 13
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=78.01 E-value=5.2 Score=34.03 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKH 426 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~kr 426 (431)
++++...+..+++++.+.|.=++.- | +..++|.+.+++++.++-+..++.|.+|
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~-~------~t~~~~tl~~lllGv~~G~~n~w~wi~r 98 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRH-Y------PSPFSWTLTMLIVGVVIGCLNAWHWVSR 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-c------CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999988753 2 2234555554444444444445555544
No 14
>PRK09546 zntB zinc transporter; Reviewed
Probab=70.02 E-value=1.3e+02 Score=30.38 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHc--cccCCCccccccccCCchHHHHHHHHHHHHHH
Q 014053 354 DKQNHLLQMGVMLTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSIF 415 (431)
Q Consensus 354 ~~rN~lmk~~l~LTi~t~i~~~~tlIaGiF--GMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~ 415 (431)
|+..++|++ +|++.+-.+..|=|-|.= ||-.-..++ +-+.++.+++++++++++
T Consensus 261 N~~m~~Lti---lt~IflPlT~IaGiyGMNf~~mPel~~~~-----gy~~~l~im~~i~~~~~~ 316 (324)
T PRK09546 261 NRRTYTMSL---MAMVFLPTTFLTGLFGVNLGGIPGGGWPF-----GFSIFCLLLVVLIGGVAW 316 (324)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhhccccCCCCCcCCcc-----hHHHHHHHHHHHHHHHHH
Confidence 678888899 999988888777777753 688765443 235676667766665543
No 15
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=69.71 E-value=43 Score=32.59 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVA 380 (431)
Q Consensus 366 LTi~t~i~~~~tlIa 380 (431)
++.+-++|+.+++|.
T Consensus 154 i~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 154 IGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555544
No 16
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.25 E-value=42 Score=28.62 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014053 157 NEAKTLEQEAHPALDKLTSKISTLNLERV----RQIKSRLVAITGRVQKVRDELEHLLD 211 (431)
Q Consensus 157 ~e~~~Le~~~~~~Ld~L~~~vs~~~Lerl----r~lK~~L~~l~~rv~~vr~~l~~lLd 211 (431)
+.+...+.+...+...+..-++...+.+| -.++.++..+..+++.+....+-||+
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555444555554432 23444445555555555444444443
No 17
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=63.23 E-value=29 Score=31.77 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHccccCCC
Q 014053 361 QMGVMLTTATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 361 k~~l~LTi~t~i~~~~tlIaGiFGMN~~~ 389 (431)
-++..||+++=+..+.-++.|+.+| |.+
T Consensus 16 liD~~lT~~aW~gfi~l~~~~~~~~-~~~ 43 (153)
T PRK14584 16 LIDIILTALAWFGFLFLLVRGLLEM-ISR 43 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence 3567789888888888899999999 543
No 18
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=60.83 E-value=17 Score=37.79 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=29.8
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCC
Q 014053 344 TEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 344 ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
.++++...|++.....+..-++-|++++.+-+.-..+=+.||++-
T Consensus 17 v~~lfs~~LgsE~~~FV~YHikRT~~tllvHs~LPlgY~~~~~~~ 61 (358)
T PF10272_consen 17 VQNLFSSWLGSEDYDFVQYHIKRTSATLLVHSCLPLGYFIGMCFF 61 (358)
T ss_pred HHHHHHHhhCccccchHHHHHhHhHHHHHHHHHHHHHHHhheeEe
Confidence 345556666666666666666777777777666655667788873
No 19
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=57.09 E-value=67 Score=30.19 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 147 CLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 147 ~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
-+......||.++..+|......-+.+. ..+|.-+.+|++++.++.++..+-+-++++
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~-----~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELE-----AQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777666666654 233333444444444444444444444333
No 20
>COG3462 Predicted membrane protein [Function unknown]
Probab=56.33 E-value=76 Score=27.50 Aligned_cols=29 Identities=10% Similarity=0.293 Sum_probs=15.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Q 014053 354 DKQNHLLQMGVMLTTATLVVSAFVVVAGIFG 384 (431)
Q Consensus 354 ~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFG 384 (431)
.+-|++.-+ .+.+++++...+-.-.|+||
T Consensus 3 k~ven~~w~--ligliavi~~v~li~~~~~g 31 (117)
T COG3462 3 KKVENFAWL--LIGLIAVIAVVGLIPSGFHG 31 (117)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhhccccc
Confidence 344554433 35555555555555556665
No 21
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=55.67 E-value=16 Score=35.99 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=11.5
Q ss_pred HHHHHHHHH-hHccccCCCc
Q 014053 372 VVSAFVVVA-GIFGMNINIE 390 (431)
Q Consensus 372 i~~~~tlIa-GiFGMN~~~~ 390 (431)
-++|++.-. -|+|||+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~ 209 (249)
T PRK15348 190 RMVADVPARQTFWIMDVINA 209 (249)
T ss_pred ccCCCCcccccccccccccc
Confidence 334443333 3899999874
No 22
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=53.70 E-value=2.5e+02 Score=28.33 Aligned_cols=94 Identities=22% Similarity=0.316 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhh----HhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCch
Q 014053 326 QIDGTLNKLSTLREYVDDTEDYINIMLD----DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQE 401 (431)
Q Consensus 326 ~id~i~~~l~~l~e~i~~ted~i~~~Ld----~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~ 401 (431)
.++.+..++.++.+.++...+.++..+| ..-|+.-.+ +-++|++-+++.-.|=+.|- =.|=|. .++.
T Consensus 221 ~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~i---mk~LTi~s~iflPpTlIagi--yGMNf~----~mPe 291 (322)
T COG0598 221 YLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEI---MKILTIVSTIFLPPTLITGF--YGMNFK----GMPE 291 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHcc--cccCCC----CCcC
Confidence 3455567777777777777777766554 455666555 99999999999999999885 233353 5677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014053 402 FLWTVGGGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 402 F~~v~~~~~~~~v~i~~~~~~y~krk~w 429 (431)
..|-+| ..++++++++..++.+.+=|+
T Consensus 292 l~~~~G-y~~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 292 LDWPYG-YPIALILMLLLALLLYLYFRR 318 (322)
T ss_pred CCCccc-HHHHHHHHHHHHHHHHHHHHh
Confidence 777664 455677777777777766543
No 23
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=53.38 E-value=30 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=28.4
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014053 176 KISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 214 (431)
Q Consensus 176 ~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 214 (431)
..+...-++|.++-.+..+++.||+ +||++||+|+
T Consensus 35 ~ls~~d~~~L~~L~~~a~rm~eRI~----tLE~ILd~e~ 69 (75)
T TIGR02976 35 SLSTDDQALLQELYAKADRLEERID----TLERILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 3566777788888888888888885 8899998875
No 24
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=53.35 E-value=30 Score=28.68 Aligned_cols=27 Identities=7% Similarity=-0.057 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHccccCC
Q 014053 362 MGVMLTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 362 ~~l~LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
.|..|+++..++.....+.+++...+.
T Consensus 4 ~E~iL~~Ig~il~il~~~~~l~~~~~~ 30 (100)
T PF13273_consen 4 AEKILGWIGGILGILFGFFGLLIGFFG 30 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456688888777766555555544443
No 25
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=53.21 E-value=84 Score=33.73 Aligned_cols=43 Identities=14% Similarity=0.263 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhh
Q 014053 178 STLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMY 220 (431)
Q Consensus 178 s~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~ 220 (431)
++.+-.|||.+++++-.--...++||-...++.|+..++-+|-
T Consensus 384 ~k~~~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d~a 426 (489)
T KOG3684|consen 384 SKGDQARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVDLA 426 (489)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 5556678999988887777778889999999999887766554
No 26
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=52.25 E-value=2.1e+02 Score=27.85 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014053 409 GATGSIFLYVVAIAWCK 425 (431)
Q Consensus 409 ~~~~~v~i~~~~~~y~k 425 (431)
++++++++|++|+++.|
T Consensus 233 ~i~~v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 233 MIFVVIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHHHHHHHHhe
Confidence 33344556777777665
No 27
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=51.78 E-value=28 Score=31.98 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCchhHHhhh
Q 014053 181 NLERVRQIKSRLVAITGRVQ---KVRDELEHLLDDDEDMAEMY 220 (431)
Q Consensus 181 ~Lerlr~lK~~L~~l~~rv~---~vr~~l~~lLddD~dm~~m~ 220 (431)
.|.+|..++++|..|.+.+. .+|+.|+++|.|++.+..+.
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l~ 152 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKLK 152 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHHH
Confidence 56778888888888888775 59999999999999877543
No 28
>COG5570 Uncharacterized small protein [Function unknown]
Probab=51.20 E-value=92 Score=23.51 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 014053 148 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVR 203 (431)
Q Consensus 148 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr 203 (431)
+++-...|+.+-..||.+++.+. ...+.+.+ .++.+|+|=-+++..+.+++
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~----n~Ps~dd~-~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAM----NSPSSDDL-AIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHh----cCCCcchH-HHHHHHHHHHHHHHHHHHHh
Confidence 34445566677777777766554 44555555 36777776555555554443
No 29
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.97 E-value=2e+02 Score=26.47 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHc
Q 014053 348 INIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIF 383 (431)
Q Consensus 348 i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiF 383 (431)
+...+.+.++.++|. ++.++++.++++.|+|
T Consensus 143 lr~~iE~~K~~~lr~-----~~g~i~~~~a~~la~~ 173 (177)
T PF07798_consen 143 LRTEIESLKWDTLRW-----LVGVIFGCVALVLAIL 173 (177)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 344455678888876 2344555555555554
No 30
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=50.41 E-value=36 Score=27.48 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=29.1
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014053 175 SKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 214 (431)
Q Consensus 175 ~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 214 (431)
...+....++|.++-.+..+++.||+ +||++||.|+
T Consensus 34 ~gLs~~d~~~L~~L~~~a~rm~eRI~----tLE~ILdae~ 69 (75)
T PF06667_consen 34 QGLSEEDEQRLQELYEQAERMEERIE----TLERILDAEH 69 (75)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 45677788888888888889999985 7899997764
No 31
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=49.85 E-value=1.8e+02 Score=25.55 Aligned_cols=72 Identities=13% Similarity=0.359 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH----HHhHccc
Q 014053 316 LEMLLEAYFVQIDGTLNKLSTLREYVDDTED------YINIMLDDKQNHLLQMGVMLTTATLVVSAFVV----VAGIFGM 385 (431)
Q Consensus 316 ~E~LLE~y~~~id~i~~~l~~l~e~i~~ted------~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tl----IaGiFGM 385 (431)
+-.++-.|-.+...+.+++..+.+..++..+ .-++..=.+|=++++-.+.+...++++...+. +.+++++
T Consensus 12 ig~ll~~~tnRl~ri~dR~R~L~~~~~~~~~~~~~~~~~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~ 91 (130)
T PF11026_consen 12 IGLLLLVLTNRLARIVDRIRQLHDELRDAPDEEERRLRRELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSI 91 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456677777888888888888776654211 12222334666677666666666665554443 4455555
Q ss_pred cC
Q 014053 386 NI 387 (431)
Q Consensus 386 N~ 387 (431)
|+
T Consensus 92 ~~ 93 (130)
T PF11026_consen 92 DL 93 (130)
T ss_pred ch
Confidence 54
No 32
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.62 E-value=1.1e+02 Score=27.23 Aligned_cols=33 Identities=9% Similarity=0.261 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 014053 146 ACLEAACSCLENEAKTLEQEAHPALDKLTSKIS 178 (431)
Q Consensus 146 ~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs 178 (431)
--|..+|..+...++.+......+=+.|+.++.
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId 71 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKHLSQRID 71 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666667777777777666665554
No 33
>PRK10884 SH3 domain-containing protein; Provisional
Probab=49.45 E-value=2.4e+02 Score=26.95 Aligned_cols=118 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccc
Q 014053 177 ISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRT 256 (431)
Q Consensus 177 vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (431)
|....|..-..++.++-++++.+..+++.+.++-.+-+.
T Consensus 80 V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~----------------------------------------- 118 (206)
T PRK10884 80 IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQ----------------------------------------- 118 (206)
T ss_pred EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------------------------------------
Q ss_pred hhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 257 TAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLST 336 (431)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~ 336 (431)
...++..-++.--+++..+-+.-+.
T Consensus 119 -------------------------------------------------------~~~~l~~~~~~~~~~~~~L~~~n~~ 143 (206)
T PRK10884 119 -------------------------------------------------------RTAEMQQKVAQSDSVINGLKEENQK 143 (206)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHH---HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHH
Q 014053 337 LREYVDDTEDYI---NIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGS 413 (431)
Q Consensus 337 l~e~i~~ted~i---~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~ 413 (431)
|++.+..+..-. ...++..++.++.- ||.+|+.+++.
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~~~~~~~~----------------------------------------wf~~Gg~v~~~ 183 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDKQRTIIMQ----------------------------------------WFMYGGGVAGI 183 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHHchHHHHH
Q ss_pred HHHHHHHHHHHH--HcC---cC
Q 014053 414 IFLYVVAIAWCK--HKR---LL 430 (431)
Q Consensus 414 v~i~~~~~~y~k--rk~---wl 430 (431)
.+++.+++-+++ ||+ |.
T Consensus 184 GlllGlilp~l~prRkr~~~W~ 205 (206)
T PRK10884 184 GLLLGLLLPHLIPRRKRKDRWM 205 (206)
T ss_pred HHHHHHHhcccccccccccccc
No 34
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=47.43 E-value=5e+02 Score=29.93 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHccccCCC
Q 014053 370 TLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 370 t~i~~~~tlIaGiFGMN~~~ 389 (431)
-+++...+++.|++|-.=..
T Consensus 427 Iv~~~~lGLl~G~~G~~~~~ 446 (806)
T PF05478_consen 427 IVLCLLLGLLCGCCGYRRRA 446 (806)
T ss_pred HHHHHHHHHHHhhccCCCCC
Confidence 33555678899999965443
No 35
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=47.12 E-value=5.9e+02 Score=30.66 Aligned_cols=6 Identities=33% Similarity=1.304 Sum_probs=4.1
Q ss_pred HHhHcc
Q 014053 379 VAGIFG 384 (431)
Q Consensus 379 IaGiFG 384 (431)
+.|+||
T Consensus 514 ~~Gv~G 519 (1163)
T COG1196 514 LPGVYG 519 (1163)
T ss_pred CCCccc
Confidence 667777
No 36
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=46.52 E-value=30 Score=31.91 Aligned_cols=41 Identities=20% Similarity=0.426 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCchhHHhhh
Q 014053 180 LNLERVRQIKSRLVAITGRVQ---KVRDELEHLLDDDEDMAEMY 220 (431)
Q Consensus 180 ~~Lerlr~lK~~L~~l~~rv~---~vr~~l~~lLddD~dm~~m~ 220 (431)
..|.+|..++++|..|.+.+. .+|+.|+++|.|++.+..+.
T Consensus 110 p~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L~ 153 (159)
T TIGR03358 110 PELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKLL 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHHH
Confidence 356778888888888888774 59999999999988876543
No 37
>PTZ00370 STEVOR; Provisional
Probab=46.39 E-value=69 Score=32.34 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCchh
Q 014053 201 KVRDELEHLLDDDED 215 (431)
Q Consensus 201 ~vr~~l~~lLddD~d 215 (431)
.+-+-+|++..|+.|
T Consensus 110 el~e~~ee~fg~~~~ 124 (296)
T PTZ00370 110 ELLETYEEMFGDESD 124 (296)
T ss_pred HHHHHHHHHhcCccc
Confidence 466778888888888
No 38
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.80 E-value=36 Score=30.00 Aligned_cols=13 Identities=15% Similarity=-0.250 Sum_probs=6.1
Q ss_pred CchHHHHHHHHHH
Q 014053 399 MQEFLWTVGGGAT 411 (431)
Q Consensus 399 ~~~F~~v~~~~~~ 411 (431)
+.-.++++|++++
T Consensus 64 ~~i~~Ii~gv~aG 76 (122)
T PF01102_consen 64 PAIIGIIFGVMAG 76 (122)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cceeehhHHHHHH
Confidence 3445555554443
No 39
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.13 E-value=60 Score=30.68 Aligned_cols=30 Identities=10% Similarity=0.236 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCC
Q 014053 355 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 355 ~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
+|....+. +.++.+++.+..++..+..+ ++
T Consensus 142 ~r~~~~k~---~~~~~~~~~~w~~~~~~~~~-lp 171 (206)
T PF06570_consen 142 KRPSWWKY---ILISVLAMVLWIVIFVLTSF-LP 171 (206)
T ss_pred cccHHHHH---HHHHHHHHHHHHHHHHHHHH-cc
Confidence 34444444 44455555555555555555 44
No 40
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=45.06 E-value=1.9e+02 Score=31.34 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCC
Q 014053 313 VEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 313 ~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
.+.+|..|..|..++..+-..+..|++.-.. ++..|.|++.-.-++ =.++.-+..|+.+|-.|-.=++.
T Consensus 30 L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~----l~~~L~Nrk~~~~~L---~~~i~~i~ipP~lI~~I~~~~v~ 98 (508)
T PF04129_consen 30 LESLEEMLSNFQNDLGSISSEIRSLQERSSS----LNVKLKNRKAVEEKL---SPFIDDIVIPPDLIRSICEGPVN 98 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHH---HHHHHHHcCCHHHHHhHhcCCCC
Confidence 4567889999999999999999888765544 477788888888777 78888889999999999876664
No 41
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=44.72 E-value=1.2e+02 Score=27.10 Aligned_cols=6 Identities=33% Similarity=0.467 Sum_probs=2.3
Q ss_pred HHhHcc
Q 014053 379 VAGIFG 384 (431)
Q Consensus 379 IaGiFG 384 (431)
++|+||
T Consensus 94 ~~~~~~ 99 (142)
T PF11712_consen 94 FAGWYW 99 (142)
T ss_pred HHHHHH
Confidence 334433
No 42
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.11 E-value=2.5e+02 Score=25.51 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccCChhhHH-HHHHHHHHHHHHHHHHHHHHH
Q 014053 138 PFEFVALEACLEAACSCLENEAKTLEQEAHPALD---KLTSKISTLNLE-RVRQIKSRLVAITGRVQKVRD 204 (431)
Q Consensus 138 PFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld---~L~~~vs~~~Le-rlr~lK~~L~~l~~rv~~vr~ 204 (431)
|=|+..|+.= +..|..++..++..+..+.. .|.+.+++..|. .+-.++..+..++.|+..++.
T Consensus 71 ~eel~~ld~e----i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAE----IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355555544 66777777888777776644 455677777775 467889999999999998887
No 43
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=43.81 E-value=78 Score=31.90 Aligned_cols=14 Identities=14% Similarity=0.487 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCchh
Q 014053 202 VRDELEHLLDDDED 215 (431)
Q Consensus 202 vr~~l~~lLddD~d 215 (431)
+-+-.+++..|+.|
T Consensus 112 l~e~~~~~fg~e~~ 125 (295)
T TIGR01478 112 LLEKYEEMFGDESH 125 (295)
T ss_pred HHHHHHHHhCCccc
Confidence 44556666677777
No 44
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=43.45 E-value=56 Score=29.88 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=43.1
Q ss_pred HHHHHHHh-hHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 014053 345 EDYINIML-DDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAW 423 (431)
Q Consensus 345 ed~i~~~L-d~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y 423 (431)
.++++..- |.+-+++++. -+++|+.++...++.|++=+++.. +. ...+ .++|......-...++..+.+.+
T Consensus 50 i~Ly~~~ty~k~~~k~l~k---t~~iSF~~avLGiifgI~~qll~~--Ws--lsiM-~wYWll~LlLyl~tiisLViLVf 121 (161)
T PF13042_consen 50 IDLYCKNTYDKKFSKVLIK---TNVISFNFAVLGIIFGIIHQLLGK--WS--LSIM-MWYWLLILLLYLITIISLVILVF 121 (161)
T ss_pred HHHhcccchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhh--hh--hHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444333 4445555555 899999999999999999998864 21 1223 23443333333333344445555
Q ss_pred HHHc
Q 014053 424 CKHK 427 (431)
Q Consensus 424 ~krk 427 (431)
.++|
T Consensus 122 ~n~k 125 (161)
T PF13042_consen 122 VNRK 125 (161)
T ss_pred ccCC
Confidence 5554
No 45
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=43.26 E-value=15 Score=32.05 Aligned_cols=21 Identities=5% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHc
Q 014053 363 GVMLTTATLVVSAFVVVAGIF 383 (431)
Q Consensus 363 ~l~LTi~t~i~~~~tlIaGiF 383 (431)
++.+.++|.++...|+|.|+|
T Consensus 31 nliiG~vT~l~VLvtii~afv 51 (118)
T PF10856_consen 31 NLIIGAVTSLFVLVTIISAFV 51 (118)
T ss_pred EeehHHHHHHHHHHHHhheEE
Confidence 344788888888888887765
No 46
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=42.44 E-value=56 Score=23.00 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH-HHHcC
Q 014053 409 GATGSIFLYVVAIAW-CKHKR 428 (431)
Q Consensus 409 ~~~~~v~i~~~~~~y-~krk~ 428 (431)
.+++++++.+.++.| |.+||
T Consensus 12 V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 12 VVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHcc
Confidence 334444444444443 55554
No 47
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.42 E-value=48 Score=30.61 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhHcc
Q 014053 366 LTTATLVVSAFVVVAGIFG 384 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFG 384 (431)
++++.+++++.-+++|+-|
T Consensus 7 ~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 7 ISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555
No 48
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.27 E-value=2e+02 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014053 313 VEELEMLLEAYFVQIDGTL 331 (431)
Q Consensus 313 ~~e~E~LLE~y~~~id~i~ 331 (431)
.+|.|.+|+.-..++-+-.
T Consensus 24 e~~~e~~L~eil~~LleaQ 42 (206)
T PF06570_consen 24 EEEIEELLEEILPHLLEAQ 42 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777776666654433
No 49
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=41.93 E-value=4.5e+02 Score=27.83 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 014053 313 VEELEMLLEAYFVQID 328 (431)
Q Consensus 313 ~~e~E~LLE~y~~~id 328 (431)
..+++.-+|++.-++-
T Consensus 348 aRdIqEalEscqtris 363 (455)
T KOG3850|consen 348 ARDIQEALESCQTRIS 363 (455)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677776666553
No 50
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=41.75 E-value=1.3e+02 Score=28.11 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 149 EAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEH 208 (431)
Q Consensus 149 ~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~ 208 (431)
......|+.....++..+..+.+.+..+-+.-.--+|.+.++.+-++..+++++-..|.+
T Consensus 84 ~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 84 SVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665555544433334457888999999999999988777776
No 51
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=41.08 E-value=62 Score=31.49 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHccc
Q 014053 355 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGM 385 (431)
Q Consensus 355 ~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGM 385 (431)
+++++++. +..+-++...|.+++.+.|+
T Consensus 4 ~k~~~~~~---~~~illg~~iGg~~G~~~~~ 31 (248)
T PF11368_consen 4 KKKRILRF---LLLILLGGLIGGFIGFFIGR 31 (248)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34567777 44444444444444443333
No 52
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=40.28 E-value=49 Score=31.03 Aligned_cols=20 Identities=15% Similarity=0.428 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhHcccc
Q 014053 367 TTATLVVSAFVVVAGIFGMN 386 (431)
Q Consensus 367 Ti~t~i~~~~tlIaGiFGMN 386 (431)
+++++.++..++++++||.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (199)
T PF10112_consen 11 WILGVLIAAITFLVSFFGFD 30 (199)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45666666677777777654
No 53
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=39.99 E-value=26 Score=28.15 Aligned_cols=24 Identities=4% Similarity=0.199 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHccccCCC
Q 014053 366 LTTATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGMN~~~ 389 (431)
++.+-.++++.++|.|++=-|+..
T Consensus 13 ~~~il~~~~iisfi~Gy~~q~~~~ 36 (76)
T PF06645_consen 13 MQYILIISAIISFIVGYITQSFSY 36 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777778888999988776654
No 54
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=39.86 E-value=1.7e+02 Score=30.01 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014053 160 KTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDD 212 (431)
Q Consensus 160 ~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLdd 212 (431)
-.+......+.+......+=..-..|..+-++|.+|+++++.++.+|+++-..
T Consensus 266 m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 266 MRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34555555555555444332223345566778889999999999998887543
No 55
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=39.60 E-value=41 Score=35.63 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhh
Q 014053 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLT 222 (431)
Q Consensus 143 aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt 222 (431)
=|||+-..++..+-+++..|..+++++.-+|.......+. |+..|..|+.+|..+|..+---.|++-=.|-.|+.-.=+
T Consensus 25 ELecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~-R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkS 103 (518)
T KOG1830|consen 25 ELECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFNH-RANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKS 103 (518)
T ss_pred ceeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhh
Confidence 3788888888888888899999999999999877655443 677788888888888877766666665556666554444
Q ss_pred HHH
Q 014053 223 EKL 225 (431)
Q Consensus 223 ~~~ 225 (431)
...
T Consensus 104 Stv 106 (518)
T KOG1830|consen 104 STV 106 (518)
T ss_pred hhh
Confidence 433
No 56
>PRK11020 hypothetical protein; Provisional
Probab=37.66 E-value=1.6e+02 Score=25.75 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHhhhhhHHHhhhh
Q 014053 156 ENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE-DMAEMYLTEKLMQQL 229 (431)
Q Consensus 156 e~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~-dm~~m~Lt~~~~~~~ 229 (431)
.+|+..|.+....+=..+..-..+.+-+-+-++++....++.++..++..=..-|..+. ++.+|.+++......
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~R~iTK~E 78 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFSRAITKKE 78 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhccHHH
Confidence 34455555444443333333334456677889999999999999999988877776554 788888888765543
No 57
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.65 E-value=1.6e+02 Score=26.18 Aligned_cols=27 Identities=7% Similarity=0.266 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHc-cccCC
Q 014053 362 MGVMLTTATLVVSAFVVVAGIF-GMNIN 388 (431)
Q Consensus 362 ~~l~LTi~t~i~~~~tlIaGiF-GMN~~ 388 (431)
+++.+|++++.++..-.....| |+|+.
T Consensus 83 ~Nilvsv~~~~~~~~~~~~~~~~~~~~~ 110 (142)
T PF11712_consen 83 FNILVSVFAVFFAGWYWAGYSFGGWSFP 110 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchH
Confidence 4555788888887777777777 66553
No 58
>PRK08456 flagellar motor protein MotA; Validated
Probab=37.45 E-value=61 Score=31.97 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhHc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 414 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiF--GMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v 414 (431)
.|++.++++.+.++.|++ |=|+..- + ++++|.+++|+++.+++
T Consensus 4 ~tiiG~~~~~~~i~~~~~~~gg~~~~~-~-----~~~~~~IV~Ggt~~a~~ 48 (257)
T PRK08456 4 STILGMVLAVASISVGDILEGGNPLHV-I-----HLSSFIIVVPTALFAAM 48 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHH-h-----hHhHHHHHHHHHHHHHH
Confidence 788888999988888866 6555442 2 46778888887765544
No 59
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.07 E-value=3.4e+02 Score=27.73 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014053 313 VEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDY 347 (431)
Q Consensus 313 ~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~ 347 (431)
.++-+.+|+.|-+.-.++-+.+..|++..+..+.+
T Consensus 57 ~~~~~~FL~~Fp~~k~~Le~~I~kL~~lAd~idk~ 91 (313)
T PF05461_consen 57 QQDRERFLKEFPQLKEELEEHIRKLRALADEIDKV 91 (313)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777666566666666666555555444
No 60
>COG4949 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=36.72 E-value=4e+02 Score=27.44 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHH--HHH-HHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHH
Q 014053 333 KLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLT--TAT-LVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGG 409 (431)
Q Consensus 333 ~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LT--i~t-~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~ 409 (431)
.-..++..|+--.|--|..+=+.+|.-.++.++|- +=. .++++.-.|.|++|-=.+.- . +.+|.+-.+++++.
T Consensus 324 at~LlRtwidve~erQN~~lL~~Md~ra~lQlrLQqtVEGLSvaAvsYYVvGLiGYl~K~~--s--h~~p~~pevvt~~~ 399 (424)
T COG4949 324 ATALLRTWIDVELERQNQELLNSMDARAQLQLRLQQTVEGLSVAAVSYYVVGLIGYLAKAW--S--HGWPVDPEVVTGGS 399 (424)
T ss_pred HHHHHHHHhhHHHHhhhHHHHHhhhHHHHHHHHHHHHhccceehhhhHHHHHHHHHHHHHH--H--hCCCCChhHhhccc
Confidence 33445555555555555555556666655555543 322 34566678899999876631 1 23444445555544
Q ss_pred HHH
Q 014053 410 ATG 412 (431)
Q Consensus 410 ~~~ 412 (431)
+=+
T Consensus 400 VP~ 402 (424)
T COG4949 400 VPF 402 (424)
T ss_pred hhH
Confidence 433
No 61
>COG5487 Small integral membrane protein [Function unknown]
Probab=35.99 E-value=1.7e+02 Score=21.96 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHccc
Q 014053 369 ATLVVSAFVVVAGIFGM 385 (431)
Q Consensus 369 ~t~i~~~~tlIaGiFGM 385 (431)
++++|.+.++|+|.+|.
T Consensus 4 waliFlvialIa~~lGF 20 (54)
T COG5487 4 WALIFLVIALIAGALGF 20 (54)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 57889999999999995
No 62
>PRK02935 hypothetical protein; Provisional
Probab=35.98 E-value=2.9e+02 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=12.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHH
Q 014053 353 DDKQNHLLQMGVMLTTATLVVS 374 (431)
Q Consensus 353 d~~rN~lmk~~l~LTi~t~i~~ 374 (431)
+++-|++=.+.|.|..+.+++.
T Consensus 6 ssKINkiRt~aL~lvfiG~~vM 27 (110)
T PRK02935 6 SNKINKIRTFALSLVFIGFIVM 27 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566776555555555544443
No 63
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=35.64 E-value=71 Score=21.00 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 014053 400 QEFLWTVGGGATGSIFLYV 418 (431)
Q Consensus 400 ~~F~~v~~~~~~~~v~i~~ 418 (431)
+.|-|+.|+.+++++.+..
T Consensus 2 WYfaWilG~~lA~~~~i~~ 20 (28)
T PF08173_consen 2 WYFAWILGVLLACAFGILN 20 (28)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4578887766655544433
No 64
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=35.48 E-value=95 Score=27.12 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014053 401 EFLWTVGGGATGSIFLYVVAIAWCKHKR 428 (431)
Q Consensus 401 ~F~~v~~~~~~~~v~i~~~~~~y~krk~ 428 (431)
+..|.++..++++ ++.|.||++++
T Consensus 68 A~nwavgsF~l~s----~~~we~Cr~~r 91 (118)
T PF12597_consen 68 AANWAVGSFFLGS----LGSWEYCRYNR 91 (118)
T ss_pred chhhhhHHHHHHH----HHHHHHHHHHH
Confidence 4566666444433 36778888764
No 65
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=35.07 E-value=51 Score=29.24 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=30.9
Q ss_pred HHHHHHhHccccCCCcccc----ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014053 375 AFVVVAGIFGMNINIELFD----EHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 375 ~~tlIaGiFGMN~~~~~~~----~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~w 429 (431)
...++=+...+|=...+.. ...+....+.++..++++.+++++.+|+.|.|-||.
T Consensus 13 L~~l~q~~~~~~~nsS~la~~~~~s~~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK~ 71 (129)
T PF02060_consen 13 LSKLWQETVQQSSNSSPLASRSPSSSDDDNEYLYILVVMGFFGFFTVGIMLSYVRSKKR 71 (129)
T ss_dssp HHHHHHHHHHT--TTSSGGGS-S--TT-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCCCCCCCceeehHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456666666664332221 001123456666666777777788889999998763
No 66
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=34.91 E-value=1.4e+02 Score=27.62 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhHccccC
Q 014053 368 TATLVVSAFVVVAGIFGMNI 387 (431)
Q Consensus 368 i~t~i~~~~tlIaGiFGMN~ 387 (431)
+....+....+.+|+.+-=+
T Consensus 23 i~~~l~Ll~av~~~~~~~~~ 42 (161)
T COG3402 23 IPIALVLLIAVAAGVLLYFV 42 (161)
T ss_pred HHHHHHHHHHHHHHHHHhee
Confidence 34444445555555544433
No 67
>PRK09458 pspB phage shock protein B; Provisional
Probab=34.51 E-value=91 Score=25.22 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=26.3
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014053 176 KISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 214 (431)
Q Consensus 176 ~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 214 (431)
..+....++|.++-.+-.+++.|++ .||++||-|.
T Consensus 35 ~Ls~~d~~~L~~L~~~A~rm~~RI~----tLE~ILDae~ 69 (75)
T PRK09458 35 GLSQEEQQRLAQLTEKAERMRERIQ----ALEAILDAEH 69 (75)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcccC
Confidence 3566777778888777778888885 7788888764
No 68
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=34.43 E-value=3e+02 Score=25.79 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 136 VLPFEFVALEACLEAACSCLENEAKTLEQEAHPAL 170 (431)
Q Consensus 136 ~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~L 170 (431)
.|-.=|.=|....+.+-..|+.|++.|+..++.+.
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le 140 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLE 140 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677888888888888888887777776643
No 69
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=34.23 E-value=2.7e+02 Score=23.02 Aligned_cols=6 Identities=33% Similarity=0.678 Sum_probs=2.8
Q ss_pred HhHccc
Q 014053 380 AGIFGM 385 (431)
Q Consensus 380 aGiFGM 385 (431)
+++++.
T Consensus 39 ~~~~~~ 44 (112)
T PF14015_consen 39 ASLSGL 44 (112)
T ss_pred HHHhhc
Confidence 444444
No 70
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=34.12 E-value=73 Score=26.77 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhH-HHHHHHHHHHHHHHHH
Q 014053 140 EFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNL-ERVRQIKSRLVAITGR 198 (431)
Q Consensus 140 El~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~L-erlr~lK~~L~~l~~r 198 (431)
|+.+|+++++....+=..-......-...+-+.|...++...| +.+|+||++-.....+
T Consensus 12 Ei~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 12 EIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 7788888887754331100011222222333344445665444 6789999886553333
No 71
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=33.44 E-value=2.6e+02 Score=22.70 Aligned_cols=27 Identities=7% Similarity=-0.104 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHccccCCC
Q 014053 363 GVMLTTATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 363 ~l~LTi~t~i~~~~tlIaGiFGMN~~~ 389 (431)
|...|++.+++-..--+.+-||..-..
T Consensus 6 EA~~tl~l~l~yf~~W~~~ay~~~~~~ 32 (80)
T PF06196_consen 6 EARWTLGLTLIYFAWWYGFAYGLGNGD 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344566666666666777788887544
No 72
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=33.09 E-value=64 Score=23.18 Aligned_cols=10 Identities=10% Similarity=0.252 Sum_probs=4.7
Q ss_pred HHHHHHHHcC
Q 014053 419 VAIAWCKHKR 428 (431)
Q Consensus 419 ~~~~y~krk~ 428 (431)
+...+.++|+
T Consensus 23 i~~~~~~~r~ 32 (45)
T TIGR03141 23 ILWSLLDRRR 32 (45)
T ss_pred HHHHHHHHHH
Confidence 3444445544
No 73
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=32.57 E-value=1.3e+02 Score=35.27 Aligned_cols=64 Identities=28% Similarity=0.472 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhh
Q 014053 146 ACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLT 222 (431)
Q Consensus 146 ~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt 222 (431)
..|...|..++++++.|+.... .| .+.++++|+.|..++..+.++|.++++++++-.-| ++|..
T Consensus 173 ~hL~velAdle~kir~LrqElE-------EK-----~enll~lr~eLddleae~~klrqe~~e~l~ea~ra-~~yrd 236 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQELE-------EK-----FENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRA-DRYRD 236 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhh
Confidence 3455666666666665555433 32 36789999999999999999999999999976654 56643
No 74
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=32.55 E-value=86 Score=20.97 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHHHHH
Q 014053 400 QEFLWTVGGGATGSIFL 416 (431)
Q Consensus 400 ~~F~~v~~~~~~~~v~i 416 (431)
+.|-|+.|+.+++.+.+
T Consensus 2 WYfaWilG~~lA~~~~v 18 (30)
T TIGR02106 2 WYFAWILGTLLACAFGV 18 (30)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45788877655544433
No 75
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.36 E-value=1.1e+02 Score=26.36 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHccccCCC
Q 014053 368 TATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 368 i~t~i~~~~tlIaGiFGMN~~~ 389 (431)
.+++++....+++++.+.|.-.
T Consensus 3 S~~Fi~~~~~~~~~Wi~~N~~~ 24 (108)
T PF06210_consen 3 SWTFIIIFTVFLAVWILLNILA 24 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888899999999999854
No 76
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=32.10 E-value=82 Score=22.67 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=5.3
Q ss_pred HHHHHHHHcCc
Q 014053 419 VAIAWCKHKRL 429 (431)
Q Consensus 419 ~~~~y~krk~w 429 (431)
++..+.++|++
T Consensus 22 ~~~~~~~~r~~ 32 (46)
T PF04995_consen 22 IVWSLRRRRRL 32 (46)
T ss_pred HHHHHHHHHHH
Confidence 34445555543
No 77
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=32.05 E-value=3.6e+02 Score=24.01 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChh---hHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 014053 146 ACLEAACSCLENEAKTLEQEAHPALDKLTSKISTL---NLERVR-QIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 146 ~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~---~Lerlr-~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
-.++.+-......+..+...+....+.+...+... .|.||. +-|+.+..|..||..+...|+++
T Consensus 61 e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 61 EQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444333221 222221 22566666666666666666654
No 78
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=31.69 E-value=72 Score=28.45 Aligned_cols=10 Identities=10% Similarity=-0.267 Sum_probs=4.4
Q ss_pred CCchHHHHHH
Q 014053 398 GMQEFLWTVG 407 (431)
Q Consensus 398 ~~~~F~~v~~ 407 (431)
+|.+..|.+.
T Consensus 17 wP~a~GWwll 26 (146)
T PF14316_consen 17 WPLAPGWWLL 26 (146)
T ss_pred CCccHHHHHH
Confidence 4444444333
No 79
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=31.25 E-value=12 Score=31.46 Aligned_cols=10 Identities=0% Similarity=-0.087 Sum_probs=4.1
Q ss_pred HHHHHHHHHc
Q 014053 418 VVAIAWCKHK 427 (431)
Q Consensus 418 ~~~~~y~krk 427 (431)
++.|||++||
T Consensus 85 ~l~w~f~~r~ 94 (96)
T PTZ00382 85 FLCWWFVCRG 94 (96)
T ss_pred HHhheeEEee
Confidence 3334444444
No 80
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=31.24 E-value=3.6e+02 Score=23.58 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=5.3
Q ss_pred HHHHhHccccC
Q 014053 377 VVVAGIFGMNI 387 (431)
Q Consensus 377 tlIaGiFGMN~ 387 (431)
.+|..|..|+.
T Consensus 76 Gmi~~f~~l~~ 86 (139)
T PF01618_consen 76 GMIEAFQALAE 86 (139)
T ss_pred HHHHHHHHHhc
Confidence 34445555543
No 81
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=30.92 E-value=2.6e+02 Score=24.41 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=13.5
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHH
Q 014053 353 DDKQNHLLQMGVMLTTATLVVSA 375 (431)
Q Consensus 353 d~~rN~lmk~~l~LTi~t~i~~~ 375 (431)
+++-|++=.+.|.|..+.+++..
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy 27 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMY 27 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 45677776665556555555443
No 82
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=30.90 E-value=1.1e+02 Score=27.14 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014053 401 EFLWTVGGGATGSIFLYVVAIAWCKHKR 428 (431)
Q Consensus 401 ~F~~v~~~~~~~~v~i~~~~~~y~krk~ 428 (431)
|.|.+.+++++-.++++.++..++|+.+
T Consensus 34 GaW~Vl~F~glev~~l~~a~~~~~r~~~ 61 (140)
T PF10003_consen 34 GAWPVLPFAGLEVLALWYAFRRNYRHAR 61 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3566666666555666666677766543
No 83
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=30.12 E-value=4.1e+02 Score=23.88 Aligned_cols=58 Identities=29% Similarity=0.400 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 014053 135 KVLPFEFVALEACLEA---ACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVR 203 (431)
Q Consensus 135 ~~lPFEl~aLE~~L~~---~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr 203 (431)
..||= +++.++|.. +|..-. ..++...+.-.+.|++.||+.|..|+-++ .+++|++-.
T Consensus 59 a~LP~--k~iksal~aYe~AC~RWr-------~~l~e~F~~tA~svsP~Nlhll~~LR~rl--yt~QVekW~ 119 (147)
T PF04611_consen 59 AKLPP--KAIKSALSAYEKACARWR-------SDLEESFDITAKSVSPHNLHLLNQLRFRL--YTQQVEKWL 119 (147)
T ss_pred cCCCh--HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhcCchhHHHHHHHHHHH--HHHHHHHHH
Confidence 45666 777776654 444432 22333444455789999999999998776 566666643
No 84
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.78 E-value=3e+02 Score=22.19 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 014053 142 VALEACLEAACSCL-------ENEAKTLEQEAHPALDKL 173 (431)
Q Consensus 142 ~aLE~~L~~~~~~L-------e~e~~~Le~~~~~~Ld~L 173 (431)
.+|=+.+.-++..+ ++.++.++..+.++.++.
T Consensus 11 ~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~ 49 (90)
T PF06103_consen 11 AVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEI 49 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444 333344444444444443
No 85
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=29.72 E-value=99 Score=27.23 Aligned_cols=52 Identities=17% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q 014053 366 LTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE 431 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl~ 431 (431)
.++.+++...+.++.-+.|+=+...- + +++..+.|++ .+..-.|++||+|+.
T Consensus 6 valLa~C~L~G~~lGdlLG~llGV~a------N-------VGGVGiAMlL-Li~~~~~l~k~G~l~ 57 (125)
T TIGR00807 6 VALLAVCHLLGVYLGNILGMALGVKA------N-------VGGVGIAMIL-LIISKELLAKRGHLP 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc------c-------cchHHHHHHH-HHHHHHHHHHcCCCC
Confidence 56778888888888888888776531 1 2333333433 344677889999974
No 86
>PHA03231 glycoprotein BALF4; Provisional
Probab=29.68 E-value=3.1e+02 Score=31.78 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhHcc
Q 014053 369 ATLVVSAFVVVAGIFG 384 (431)
Q Consensus 369 ~t~i~~~~tlIaGiFG 384 (431)
.+++-+++++|+||.+
T Consensus 683 ~~v~ga~~SiVsG~~s 698 (829)
T PHA03231 683 SGVAGAVGSIVSGVIS 698 (829)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444455566666654
No 87
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=29.51 E-value=2.4e+02 Score=34.47 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=19.1
Q ss_pred hHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Q 014053 343 DTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFG 384 (431)
Q Consensus 343 ~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFG 384 (431)
.+.+++|..++....+.+ +|.+|+.++..++. +||
T Consensus 1327 ~l~eIIN~SINQTLsRTI-----~TSlTTLLallaLl--lFG 1361 (1403)
T PRK12911 1327 PMPILINDALQKTLGRTV-----MTTATTLSVLLILL--FVG 1361 (1403)
T ss_pred CHHHHHHHHHHHhhhhhh-----HHHHHHHHHHHHHH--HHc
Confidence 344555555544444443 66666666666555 454
No 88
>KOG3176 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=29.13 E-value=1.9e+02 Score=28.05 Aligned_cols=77 Identities=25% Similarity=0.453 Sum_probs=45.6
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 130 NRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 130 ~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
+.+.++-|||+...+|.+|+-+-. .-+.+|..+... +|...+..-.|||++=+=+.- ++-|.+|+-.-..++
T Consensus 38 Ek~APeLLp~~~elve~~ldqIe~----~eE~i~~~a~~~--dlr~~~~qmELERvkfvlrSY--lRcRL~KIekf~~~~ 109 (223)
T KOG3176|consen 38 EKCAPELLPYALELVERLLDQIEH----MEETIERKASNK--DLRVSLHQMELERVKFVLRSY--LRCRLQKIEKFLQHI 109 (223)
T ss_pred hccChhhcCChHHHHHHHHHHHHH----HHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhHHh
Confidence 477889999999999998875432 222232111111 244455566788877432222 445666666666667
Q ss_pred hcCch
Q 014053 210 LDDDE 214 (431)
Q Consensus 210 LddD~ 214 (431)
|+.++
T Consensus 110 ln~ee 114 (223)
T KOG3176|consen 110 LNQEE 114 (223)
T ss_pred hcchh
Confidence 77665
No 89
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=28.87 E-value=60 Score=21.27 Aligned_cols=9 Identities=22% Similarity=0.110 Sum_probs=4.2
Q ss_pred HHHHHHHHc
Q 014053 419 VAIAWCKHK 427 (431)
Q Consensus 419 ~~~~y~krk 427 (431)
+.+++.|||
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 344444444
No 90
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=28.85 E-value=4.6e+02 Score=26.69 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHccccCCCc
Q 014053 368 TATLVVSAFVVVAGIFGMNINIE 390 (431)
Q Consensus 368 i~t~i~~~~tlIaGiFGMN~~~~ 390 (431)
.++.++..+.-+..++|=++-.+
T Consensus 107 ~~ssIlLl~~Siss~iG~YiLap 129 (299)
T PF05884_consen 107 SWSSILLLGFSISSFIGGYILAP 129 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555566666555443
No 91
>COG4267 Predicted membrane protein [Function unknown]
Probab=28.47 E-value=3.2e+02 Score=29.10 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=38.2
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Q 014053 350 IMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVG-GGATGSIFLYVVAIAWCKHKR 428 (431)
Q Consensus 350 ~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~-~~~~~~v~i~~~~~~y~krk~ 428 (431)
..+-+.--++|+++.. +.-++|+.+..+-++|||---.. +-|.|-+. +.+-..+...+....||-+++
T Consensus 324 ltlrq~i~~~~~lQ~~--a~l~~flL~~~Ll~~~~lS~~~l---------~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~ 392 (467)
T COG4267 324 LTLRQGILEIMELQML--ASLLCFLLADALLLWFGLSEYYL---------DLFYVDVLGVSCQIVFMSLLNIFLYFDYRR 392 (467)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcChHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3355555667766444 44456667777889999964331 23544443 333333333445677776665
No 92
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.30 E-value=3.5e+02 Score=23.95 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 181 NLERVRQIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 181 ~Lerlr~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
.-+.|-.++..+..+...++.|+.+++.|
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666554
No 93
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=27.80 E-value=3e+02 Score=27.90 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 014053 160 KTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDM 216 (431)
Q Consensus 160 ~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm 216 (431)
..|+..+..+.+.+ -.||.+.|.+|..+..|+..++.-|++|-....-+
T Consensus 28 ~~L~~v~~diF~rI--------~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi 76 (297)
T PF11945_consen 28 EYLDKVSNDIFSRI--------SARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI 76 (297)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 55555555555444 34677888889999999999999999887776654
No 94
>PRK09110 flagellar motor protein MotA; Validated
Probab=27.76 E-value=60 Score=32.61 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhHc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 414 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiF--GMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v 414 (431)
+|++.++++.+.+++|++ |=|+... + +++++.+++|+++.+.+
T Consensus 2 ~tliGli~~~~~i~~g~~l~gg~~~~l-~-----~~~~~lIV~Ggtlga~l 46 (283)
T PRK09110 2 LIIIGYIVVLGSVFGGYLLAGGHLGAL-I-----QPAELLIIGGAALGAFI 46 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCChhHh-h-----chhHHHHHHHhHHHHHH
Confidence 688888999999998977 5455542 2 46778888887665443
No 95
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=27.72 E-value=1.9e+02 Score=33.72 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014053 356 QNHLLQMGVMLTTATLV---VSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 356 rN~lmk~~l~LTi~t~i---~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~w 429 (431)
.|+.+..-+.++++..+ ..|.+.+.++|||.--.+ ..+.|.+++.+..+++.-+.=.+|+||.+|
T Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~e~~K~~~~~~~~~ 901 (902)
T PRK10517 834 QSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPL---------SYFPWLVAILAGYMTLTQLVKGFYSRRYGW 901 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45544443333333332 233345678888764221 123343333333333344445667777666
No 96
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=27.71 E-value=5.2e+02 Score=24.31 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCchhHHhhhhhHHHh
Q 014053 185 VRQIKSRLVAITGRVQKVRDELEHLL-DDDEDMAEMYLTEKLM 226 (431)
Q Consensus 185 lr~lK~~L~~l~~rv~~vr~~l~~lL-ddD~dm~~m~Lt~~~~ 226 (431)
-..+++++......+....+-...-| ..++|++.-+|.++..
T Consensus 53 ~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~ 95 (221)
T PF04012_consen 53 QKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666666666655555555 4577888888877653
No 97
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.71 E-value=3.7e+02 Score=25.32 Aligned_cols=65 Identities=14% Similarity=0.344 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014053 146 ACLEAACSCLENEAKTLEQEAHPALDKL---TSKISTLNLE-RVRQIKSRLVAITGRVQKVRDELEHLL 210 (431)
Q Consensus 146 ~~L~~~~~~Le~e~~~Le~~~~~~Ld~L---~~~vs~~~Le-rlr~lK~~L~~l~~rv~~vr~~l~~lL 210 (431)
+.|+.=+..|++++..|.+.+..+..+| .+..++..++ .+..||......+.|+..++....++-
T Consensus 82 ~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vt 150 (201)
T KOG4603|consen 82 QVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVT 150 (201)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4455566667777777777777665544 4567776664 578899999999999999999988875
No 98
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=27.61 E-value=64 Score=32.26 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhHc--cc--cCCCccccccccCCchHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVAGIF--GM--NINIELFDEHKSGMQEFLWTVGGGATGSI 414 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiF--GM--N~~~~~~~~~~~~~~~F~~v~~~~~~~~v 414 (431)
.|++.++++.+.+++|++ |. |+..- + +++++.+++++++++.+
T Consensus 7 ~t~iGii~g~~~i~~~i~~gg~~~~~~~~-~-----~~~s~lIV~GGt~~a~l 53 (271)
T PRK06926 7 LTPVGIFLGITIVVLGVISNSGLSGFLSF-I-----DLTSILIVTGGLCAALF 53 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHH-h-----hHhHHHHHHHHHHHHHH
Confidence 688888888888888877 34 34432 2 46678887777665443
No 99
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.53 E-value=80 Score=29.32 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCchhHHhh
Q 014053 180 LNLERVRQIKSRLVAITGRVQ---KVRDELEHLLDDDEDMAEM 219 (431)
Q Consensus 180 ~~Lerlr~lK~~L~~l~~rv~---~vr~~l~~lLddD~dm~~m 219 (431)
..|.+|..++++|..|.+... .+++.|+++|.|++.+..+
T Consensus 115 p~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L 157 (169)
T COG3516 115 PELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKL 157 (169)
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHH
Confidence 356777888888888877654 5999999999999876543
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.49 E-value=4.1e+02 Score=26.93 Aligned_cols=6 Identities=50% Similarity=0.634 Sum_probs=2.4
Q ss_pred HHHHHh
Q 014053 63 ELQSRI 68 (431)
Q Consensus 63 ~L~~rL 68 (431)
+|.+++
T Consensus 79 EL~~~I 84 (325)
T PF08317_consen 79 ELKKYI 84 (325)
T ss_pred HHHHHH
Confidence 344443
No 101
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=27.34 E-value=2.7e+02 Score=27.55 Aligned_cols=54 Identities=26% Similarity=0.446 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHh-h--ccCChhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcC
Q 014053 159 AKTLEQEAHPALDKL-T--SKISTLNLERVRQIKSRLVA---ITGRVQKVRDELEHLLDD 212 (431)
Q Consensus 159 ~~~Le~~~~~~Ld~L-~--~~vs~~~Lerlr~lK~~L~~---l~~rv~~vr~~l~~lLdd 212 (431)
+.++...+..+++.. . .+++...|..|++++++|.. +..+|.++.++|+++|..
T Consensus 173 ~~Eia~~A~~~~~~~~~gk~~v~~kal~~lr~i~~Kl~~lsFld~~v~~l~~~i~~~L~~ 232 (257)
T PF11348_consen 173 FDEIAQEARDILEKSFAGKDQVSQKALSPLRRIRDKLAGLSFLDPRVAPLVDMIDAVLNS 232 (257)
T ss_pred HHHHHHHHHHHHHhhhcCcccccHhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHh
Confidence 445566666666544 2 34888899999999977655 678999999999999975
No 102
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=27.33 E-value=1.9e+02 Score=26.09 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHccccCCC
Q 014053 363 GVMLTTATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 363 ~l~LTi~t~i~~~~tlIaGiFGMN~~~ 389 (431)
.|.|..++++++.. +-+|.+.++.
T Consensus 29 kL~lg~~a~~iA~~---a~~~d~~~~f 52 (162)
T PF06703_consen 29 KLALGYLAVIIAGF---AFFYDYKYPF 52 (162)
T ss_pred HHHHHHHHHHHHHH---HHHhhhcCCC
Confidence 33455555555444 4466666654
No 103
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=27.04 E-value=1.5e+02 Score=22.56 Aligned_cols=36 Identities=14% Similarity=0.428 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhh
Q 014053 185 VRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMY 220 (431)
Q Consensus 185 lr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~ 220 (431)
+-+++..+..++...+.+++.++++=++=.|+.++|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666665556666666
No 104
>PRK14749 hypothetical protein; Provisional
Probab=26.83 E-value=1.7e+02 Score=19.55 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=10.9
Q ss_pred chHHHHHHHHHHHHHHHH
Q 014053 400 QEFLWTVGGGATGSIFLY 417 (431)
Q Consensus 400 ~~F~~v~~~~~~~~v~i~ 417 (431)
+.|-|+.|+.+++++.+.
T Consensus 2 WYfaWiLG~~lAc~f~il 19 (30)
T PRK14749 2 WYLLWFVGILLMCSLSTL 19 (30)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 558888776555444433
No 105
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=26.67 E-value=2e+02 Score=27.05 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014053 362 MGVMLTTATLVVSAFVV 378 (431)
Q Consensus 362 ~~l~LTi~t~i~~~~tl 378 (431)
+.+.|++++.++...++
T Consensus 24 ~QlvLgvVs~~iL~F~~ 40 (183)
T PF12263_consen 24 IQLVLGVVSAVILLFAN 40 (183)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34557777766666654
No 106
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=26.62 E-value=4.6e+02 Score=27.94 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCc
Q 014053 417 YVVAIAWCKHKRL 429 (431)
Q Consensus 417 ~~~~~~y~krk~w 429 (431)
.++++...|+.||
T Consensus 224 ~~~l~gl~r~Sr~ 236 (418)
T cd07912 224 LVLLVGLARHSRC 236 (418)
T ss_pred HHHHHHHHHhcch
Confidence 3456777777777
No 107
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=26.61 E-value=91 Score=24.74 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHcC
Q 014053 414 IFLYVVAIAWCKHKR 428 (431)
Q Consensus 414 v~i~~~~~~y~krk~ 428 (431)
.++..+.=+|||+|+
T Consensus 45 ~~lt~ltN~YFK~k~ 59 (68)
T PF04971_consen 45 GLLTYLTNLYFKIKE 59 (68)
T ss_pred HHHHHHhHhhhhhhH
Confidence 344455678888764
No 108
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=26.57 E-value=4.2e+02 Score=26.81 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 343 DTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVV 379 (431)
Q Consensus 343 ~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlI 379 (431)
+..+.++.....+--+++ +|.+|++++...+.
T Consensus 214 ~~~e~i~~ai~~~lrr~l-----~TslTt~l~llpL~ 245 (297)
T PRK13021 214 AIQEINNQAIVATFSRTM-----VTSGTTLMTVGALW 245 (297)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 344555444444333332 55555555544443
No 109
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=26.54 E-value=34 Score=38.96 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=19.0
Q ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHcCc
Q 014053 400 QEFLWTV-GGGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 400 ~~F~~v~-~~~~~~~v~i~~~~~~y~krk~w 429 (431)
..|...+ |+++++.++++.++++|||||.|
T Consensus 272 T~fLl~ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 272 TVFLLAILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 4454333 34555555566678889999876
No 110
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=26.48 E-value=3e+02 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014053 183 ERVRQIKSRLVAITGRVQKVR 203 (431)
Q Consensus 183 erlr~lK~~L~~l~~rv~~vr 203 (431)
+.|..|+.++..|+.++..+.
T Consensus 96 ~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 96 EEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566666777777666654
No 111
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=26.46 E-value=2.5e+02 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHccccCC
Q 014053 363 GVMLTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 363 ~l~LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
...+-++.+++++++.++|++-+...
T Consensus 5 a~wll~~G~l~~~~A~~~G~~d~~~~ 30 (104)
T PF09990_consen 5 AFWLLVLGLLGAIVAVLTGFVDLLTV 30 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34577888899999999999988776
No 112
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=26.33 E-value=1.4e+02 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 014053 404 WTVGGGATGSIFLYVVAIAWCKHK 427 (431)
Q Consensus 404 ~v~~~~~~~~v~i~~~~~~y~krk 427 (431)
|++++++++.++.++++.+|-|-|
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkik 30 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666677788886543
No 113
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=26.09 E-value=2.5e+02 Score=21.95 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhHccccCCC
Q 014053 364 VMLTTATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 364 l~LTi~t~i~~~~tlIaGiFGMN~~~ 389 (431)
+.++.+++-++.+.+.+.+-||=|+.
T Consensus 8 ivlAtiavFiaLagl~~~I~GlLfD~ 33 (62)
T PF11177_consen 8 IVLATIAVFIALAGLAAVIHGLLFDE 33 (62)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34777888888899999999997765
No 114
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.06 E-value=8.1e+02 Score=25.96 Aligned_cols=20 Identities=5% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 014053 326 QIDGTLNKLSTLREYVDDTE 345 (431)
Q Consensus 326 ~id~i~~~l~~l~e~i~~te 345 (431)
...++.+.+++....|.-+|
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555
No 115
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=25.76 E-value=1.4e+02 Score=26.75 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=7.0
Q ss_pred HHHHHHHHcCcC
Q 014053 419 VAIAWCKHKRLL 430 (431)
Q Consensus 419 ~~~~y~krk~wl 430 (431)
+.+.+||||+-+
T Consensus 73 ~~~lffkr~~~~ 84 (149)
T PF10754_consen 73 LLYLFFKRKRRF 84 (149)
T ss_pred HHHHHHHccchh
Confidence 355567776643
No 116
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=25.76 E-value=23 Score=31.98 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHcc
Q 014053 366 LTTATLVVSAFVVVAGIFG 384 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFG 384 (431)
++++.++++...+..|+|.
T Consensus 9 ~n~l~~l~g~~li~~g~~~ 27 (221)
T PF00335_consen 9 LNVLFLLLGLALIGVGIWL 27 (221)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666
No 117
>PF13140 DUF3980: Domain of unknown function (DUF3980)
Probab=25.69 E-value=1.6e+02 Score=23.89 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhHccccCC
Q 014053 366 LTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
|-+++++..+.+.+++++---+-
T Consensus 14 lkimsviyli~sil~afs~~sli 36 (87)
T PF13140_consen 14 LKIMSVIYLIVSILMAFSAGSLI 36 (87)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 56666777777777777765553
No 118
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=25.57 E-value=5.6e+02 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014053 181 NLERVRQIKSRLVAITGRVQKVRDELEHLLD 211 (431)
Q Consensus 181 ~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLd 211 (431)
.++++-.+.+++..|+.++.-+...|+.+-+
T Consensus 135 ~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 135 EIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777766643
No 119
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.54 E-value=1.1e+03 Score=27.24 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 014053 191 RLVAITGRVQKVRDELEHLLDD 212 (431)
Q Consensus 191 ~L~~l~~rv~~vr~~l~~lLdd 212 (431)
...+|+..++.+|.-|...+.+
T Consensus 268 ~~~qL~~~L~~vK~~L~~~l~~ 289 (806)
T PF05478_consen 268 YQSQLRDGLRGVKRDLNNTLQD 289 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455555555544
No 120
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=25.39 E-value=1.8e+02 Score=25.48 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhh
Q 014053 147 CLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLE-RVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEM 219 (431)
Q Consensus 147 ~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Le-rlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m 219 (431)
.|..+...-..++..+|.....+.+.|........+. ..+ +..++.|.++|+||..++.+
T Consensus 21 ML~aA~~g~Wd~Li~lE~~y~~~Ve~l~~~~~~~~l~~~~q-------------~~~~~lL~~IL~nda~Ir~L 81 (121)
T PRK10548 21 MLRLATEGQWDELIEQEVAYVQAVEEIAHLTIPPDISTVMQ-------------EQLRPMLRQILDNEAELKQL 81 (121)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 4445555556677888888888888886532222111 011 12346778888888887743
No 121
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=25.37 E-value=1.8e+02 Score=23.33 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHH-HHHHHHHHcCc
Q 014053 357 NHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYV-VAIAWCKHKRL 429 (431)
Q Consensus 357 N~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~-~~~~y~krk~w 429 (431)
++.++.-..=-++=+++-..-++++.++.|-+.+ +.+.||..+...++.+.--++ .++..+++|.|
T Consensus 8 ~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~-------~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erpw 74 (76)
T PF11970_consen 8 RRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIG-------HGPSFWLFCIAGFMQPSQGFVDCLVFTLRERPW 74 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCchHHHHHHHHHHHccCHHHhhheeeecccC
Confidence 3444442223333344444445666666652221 223455544433333333333 33444566766
No 122
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.98 E-value=5.6e+02 Score=27.02 Aligned_cols=26 Identities=4% Similarity=-0.055 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhHccccCCCcc
Q 014053 366 LTTATLVVSAFVVVAGIFGMNINIEL 391 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGMN~~~~~ 391 (431)
+.++-..+.+|.|..-+=|||-+-|.
T Consensus 176 v~~~Ll~~VvP~f~~if~~~~~~LP~ 201 (397)
T COG1459 176 VVLFLLIFVVPQFAEIFESLGAELPA 201 (397)
T ss_pred HHHHHHHHHhccHHHHHhhcCCCCcH
Confidence 44444455556665555556666543
No 123
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.91 E-value=3.5e+02 Score=28.39 Aligned_cols=58 Identities=14% Similarity=0.316 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 149 EAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEH 208 (431)
Q Consensus 149 ~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~ 208 (431)
......|+.++..++..+..+.+.|..+. ..-.++..+++.+..++.++..+++.+.+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~--k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP--KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677778888888888888887776655 33445667777777777777766655443
No 124
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=24.83 E-value=1.8e+02 Score=22.74 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014053 185 VRQIKSRLVAITGRVQK 201 (431)
Q Consensus 185 lr~lK~~L~~l~~rv~~ 201 (431)
+..+++.+..|..|++.
T Consensus 34 I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 34 IDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 125
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=24.81 E-value=5e+02 Score=23.44 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Q 014053 157 NEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 214 (431)
Q Consensus 157 ~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~ 214 (431)
+++...|..+..+|..+.+.++...|... +++.+..-++++..+..+++.+=.+..
T Consensus 11 ~d~y~aE~q~~~~l~~~~~~a~~~~L~~~--l~~h~~eT~~q~~rLe~~~~~lg~~p~ 66 (159)
T PF05974_consen 11 RDLYSAEKQLLKALPKLAEAASSPELKAA--LEEHLEETEQQIERLEQIFEALGADPS 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SSHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTS-S-
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 44567888999999999988887777543 677788888888888888888755544
No 126
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=24.80 E-value=3.4e+02 Score=21.17 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhHccccCCC
Q 014053 366 LTTATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGMN~~~ 389 (431)
+-++.+++.+.++..|.|-|-=+.
T Consensus 4 ~iv~lll~ii~sL~saL~~l~kd~ 27 (63)
T PF11137_consen 4 LIVLLLLAIIASLFSALFFLVKDK 27 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 677888899999999999996553
No 127
>PRK14756 hypothetical protein; Provisional
Probab=24.73 E-value=61 Score=21.25 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014053 363 GVMLTTATLVVSAFVVVA 380 (431)
Q Consensus 363 ~l~LTi~t~i~~~~tlIa 380 (431)
+|+++.+|++++.+-.|+
T Consensus 4 dLK~SL~tTvvaL~~Iva 21 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVA 21 (29)
T ss_pred chhhhHHHHHHHHHHHHH
Confidence 444555555555444443
No 128
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=24.51 E-value=2.3e+02 Score=33.18 Aligned_cols=9 Identities=0% Similarity=0.187 Sum_probs=5.6
Q ss_pred HHHH-HcCcC
Q 014053 422 AWCK-HKRLL 430 (431)
Q Consensus 422 ~y~k-rk~wl 430 (431)
+|+| .|+||
T Consensus 894 ~~~r~~~~~~ 903 (903)
T PRK15122 894 FYIRRFGQWF 903 (903)
T ss_pred HHhhhccccC
Confidence 4555 48886
No 129
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=24.35 E-value=2e+02 Score=28.55 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=49.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHH-----HHHHHHHHHHHH
Q 014053 132 DGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVA-----ITGRVQKVRDEL 206 (431)
Q Consensus 132 ~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~-----l~~rv~~vr~~l 206 (431)
..+...|| .++|.++...+..|+.-....=..++..+..+..++-...+.+.-.||+++.. ++....+.++.|
T Consensus 185 elp~f~p~--~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i 262 (295)
T PF01031_consen 185 ELPGFVPE--SAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMI 262 (295)
T ss_dssp SSS-SCCH--HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788 99999999888888777777666666666666555434455554445544433 334444455566
Q ss_pred HHHhcCc
Q 014053 207 EHLLDDD 213 (431)
Q Consensus 207 ~~lLddD 213 (431)
+++++.+
T Consensus 263 ~~li~~E 269 (295)
T PF01031_consen 263 ENLIDME 269 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655544
No 130
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=24.23 E-value=1.5e+02 Score=34.13 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHH-------------------HHHHHHHHHHHHHHHHhHccc
Q 014053 326 QIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGV-------------------MLTTATLVVSAFVVVAGIFGM 385 (431)
Q Consensus 326 ~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l-------------------~LTi~t~i~~~~tlIaGiFGM 385 (431)
++-+++.++..++=.+.++.|.|.-++....-+++|+++ +=++.+++-.+|.|+.|.+|=
T Consensus 861 hLvgiIaklk~i~IevTStwEsIKdQierakaeLLRLDlHEGD~p~WikqL~~At~DvWPaaA~~~~~iGnfL~~ta~g 939 (981)
T PF03408_consen 861 HLVGIIAKLKGIQIEVTSTWESIKDQIERAKAELLRLDLHEGDYPAWIKQLASATKDVWPAAASFLSGIGNFLSGTAGG 939 (981)
T ss_pred hHHHHHHHhcCcEEEEeehHhhHHHHHHHHHHHHheeecccCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhcccc
Confidence 677888888888888888888888888877777777654 456778888888888765543
No 131
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=24.23 E-value=1.1e+02 Score=25.94 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=20.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 398 GMQEFLWTVGGGATGSIFLYVVAIAWCKH 426 (431)
Q Consensus 398 ~~~~F~~v~~~~~~~~v~i~~~~~~y~kr 426 (431)
.||..+.++.+++++++.++++++++.|+
T Consensus 16 ~PWeIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35666667777777777788887777754
No 132
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=24.21 E-value=4.1e+02 Score=27.28 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhcCch
Q 014053 198 RVQKVRDELEHLLDDDE 214 (431)
Q Consensus 198 rv~~vr~~l~~lLddD~ 214 (431)
--+++-|.|++.|...+
T Consensus 32 W~~~Fyd~iQ~al~~~~ 48 (315)
T PF05992_consen 32 WYGPFYDLIQKALSKPG 48 (315)
T ss_pred hhHHHHHHHHHHhcCCC
Confidence 33445555555554433
No 133
>PRK08124 flagellar motor protein MotA; Validated
Probab=24.10 E-value=79 Score=31.33 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhHc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 414 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiF--GMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v 414 (431)
.|++.++++.+.+++|++ |=|+..- + ++++|.+++|+++.+.+
T Consensus 4 ~tiiG~~~~~~~i~~g~~~~gg~~~~~-~-----~~~~~lIV~Ggt~~a~~ 48 (263)
T PRK08124 4 TTIIGLILGLIAVVVGMVVKGASLAVL-L-----NPAAILIIIVGTIAAVM 48 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-h-----hHHHHHHHHHHHHHHHH
Confidence 788899999999998877 4455432 2 46778888877665443
No 134
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=23.88 E-value=1e+02 Score=27.98 Aligned_cols=12 Identities=17% Similarity=-0.164 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 014053 402 FLWTVGGGATGS 413 (431)
Q Consensus 402 F~~v~~~~~~~~ 413 (431)
.+|+++++++++
T Consensus 117 ~~~~i~~~i~g~ 128 (145)
T PF10661_consen 117 ISPTILLSIGGI 128 (145)
T ss_pred hhHHHHHHHHHH
Confidence 444444444444
No 135
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.75 E-value=1.3e+02 Score=24.40 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 014053 326 QIDGTLNKLSTLREYVDDTEDYINI 350 (431)
Q Consensus 326 ~id~i~~~l~~l~e~i~~ted~i~~ 350 (431)
+++++.+.++.|+++|+.+|.++..
T Consensus 43 ~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 43 RLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566677888888888888887654
No 136
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=23.69 E-value=52 Score=26.51 Aligned_cols=25 Identities=20% Similarity=0.013 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 014053 404 WTVGGGATGSIFLYVVAIAWCKHKR 428 (431)
Q Consensus 404 ~v~~~~~~~~v~i~~~~~~y~krk~ 428 (431)
.++.+.+++|++..+..++.||||+
T Consensus 34 VviPl~L~LCiLvl~yai~~fkrkG 58 (74)
T PF11857_consen 34 VVIPLVLLLCILVLIYAIFQFKRKG 58 (74)
T ss_pred EeHHHHHHHHHHHHHHHhheeeecC
Confidence 3445667777777777777789886
No 137
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.60 E-value=2.8e+02 Score=27.38 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHccccCCC
Q 014053 372 VVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 372 i~~~~tlIaGiFGMN~~~ 389 (431)
.++.+++++.+|+|-...
T Consensus 49 ~i~~~~Ll~~v~t~~~~~ 66 (284)
T PF12805_consen 49 TIGFATLLVAVYTMAGPS 66 (284)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 345567777788886654
No 138
>PF15431 TMEM190: Transmembrane protein 190
Probab=23.26 E-value=79 Score=27.48 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=17.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014053 398 GMQEFLWTVGGGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 398 ~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~w 429 (431)
++++..|+.++.+++ +..+.++||.||++.
T Consensus 60 HmWaL~wtC~gll~L--i~~iclFWWAkRrd~ 89 (134)
T PF15431_consen 60 HMWALGWTCGGLLLL--ICSICLFWWAKRRDM 89 (134)
T ss_pred HHHHHHHHHHhHHHH--HHHHHHHHHHHHhch
Confidence 445566665544332 223457888898876
No 139
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=23.20 E-value=4.9e+02 Score=30.44 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 014053 365 MLTTATLVVSAFVVVA 380 (431)
Q Consensus 365 ~LTi~t~i~~~~tlIa 380 (431)
.+|.+|++++...+..
T Consensus 777 i~TslTTll~llpL~l 792 (855)
T PRK14726 777 VLTSATTLLALLALYL 792 (855)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3667777666666653
No 140
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=22.98 E-value=7.8e+02 Score=24.68 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 142 VALEACLEAACSCLENEAKTLEQEAHPA 169 (431)
Q Consensus 142 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~ 169 (431)
+-+|+-|+.-...++.+.+.|+.....+
T Consensus 44 rE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 44 REIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666665554
No 141
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=22.62 E-value=85 Score=31.02 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhHc-cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVAGIF-GMNINIELFDEHKSGMQEFLWTVGGGATGSI 414 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiF-GMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v 414 (431)
.|++.++++.+.+++|++ |=|+.. ++ ++++|.+++|+++.+.+
T Consensus 4 ~tiiGli~~~~~i~~g~~~gg~~~~-l~-----~~~~~lIV~GGt~ga~l 47 (254)
T PRK08990 4 ATLIGLIGAFAFVIMAMVLGGGIGM-FV-----DVPSILIVFGGSLFVVL 47 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHH-Hh-----CHHHHHHHHHHHHHHHH
Confidence 788999999999999977 223322 12 46778888877765544
No 142
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=22.16 E-value=3.5e+02 Score=23.91 Aligned_cols=25 Identities=4% Similarity=0.186 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhHccccCC
Q 014053 364 VMLTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 364 l~LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
+.+.+++.++.....+.|.++++++
T Consensus 4 ~i~G~~~~l~~~~~~~~~~~~~~~~ 28 (163)
T PF13858_consen 4 LIFGLILILFFLLSYLLGMHDIKYP 28 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccc
Confidence 4466666666666666666655554
No 143
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.15 E-value=6.2e+02 Score=23.38 Aligned_cols=74 Identities=23% Similarity=0.150 Sum_probs=43.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 014053 135 KVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQK-VRDELEHLL 210 (431)
Q Consensus 135 ~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~-vr~~l~~lL 210 (431)
.+.|+--++||++.+-+- .++.-.....+.....+++|+..- +..--.+.++|+-|..+..-+.. +|+.|-+++
T Consensus 76 kpyPWt~~~L~aa~el~e-e~eeLs~deke~~~~sl~dL~~d~-PkT~vA~~rfKk~~~K~g~~v~~~~~dIlVdv~ 150 (158)
T PF10083_consen 76 KPYPWTENALEAANELIE-EDEELSPDEKEQFKESLPDLTKDT-PKTKVAATRFKKILSKAGSIVGDAIRDILVDVA 150 (158)
T ss_pred CCCchHHHHHHHHHHHHH-HhhcCCHHHHHHHHhhhHHHhhcC-CccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 467999999999877654 333333334455666677777653 33333567788777666554432 444444443
No 144
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=22.13 E-value=96 Score=25.66 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCc
Q 014053 408 GGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 408 ~~~~~~v~i~~~~~~y~krk~w 429 (431)
+.+++.+.+.+++++|+.|.+|
T Consensus 24 ga~llL~~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 24 GALLLLVAVCLGVVLYCHRFHW 45 (87)
T ss_pred cHHHHHHHHHHHHHHhhhhhcc
Confidence 4445555666678889888777
No 145
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.10 E-value=1.4e+02 Score=21.55 Aligned_cols=8 Identities=13% Similarity=0.941 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 014053 416 LYVVAIAW 423 (431)
Q Consensus 416 i~~~~~~y 423 (431)
+|+++++|
T Consensus 21 ~F~gi~~w 28 (49)
T PF05545_consen 21 FFIGIVIW 28 (49)
T ss_pred HHHHHHHH
Confidence 33343333
No 146
>PF14163 SieB: Superinfection exclusion protein B
Probab=21.81 E-value=2.4e+02 Score=25.17 Aligned_cols=19 Identities=5% Similarity=0.128 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 014053 364 VMLTTATLVVSAFVVVAGI 382 (431)
Q Consensus 364 l~LTi~t~i~~~~tlIaGi 382 (431)
+.+..++++|+|-+++..+
T Consensus 5 l~i~~~~llf~P~~~~~~l 23 (151)
T PF14163_consen 5 LIIFSGLLLFLPESLLEWL 23 (151)
T ss_pred HHHHHHHHHHCCHHHHHHh
Confidence 4466777778887777654
No 147
>PRK07668 hypothetical protein; Validated
Probab=21.65 E-value=8e+02 Score=24.35 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014053 313 VEELEMLLEAYFVQIDGTLNK 333 (431)
Q Consensus 313 ~~e~E~LLE~y~~~id~i~~~ 333 (431)
.+|.|.+++.+..|+-+-.++
T Consensus 24 eeeieeiL~Ei~~hLlEgQk~ 44 (254)
T PRK07668 24 EEDIESFLEDAELHLIEGEKD 44 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 577788888888776554433
No 148
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=21.20 E-value=3.6e+02 Score=28.41 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHcCcC
Q 014053 414 IFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 414 v~i~~~~~~y~krk~wl 430 (431)
++.+++++...|+.||.
T Consensus 198 ~icl~~l~glar~Sk~~ 214 (406)
T PF04906_consen 198 VICLLGLLGLARQSKCL 214 (406)
T ss_pred HHHHHHHHHHHhcCcce
Confidence 33445678888999884
No 149
>PRK09109 motC flagellar motor protein; Reviewed
Probab=21.15 E-value=98 Score=30.35 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHc--cccCCCccccccccCCchHHHHHHHHHHHHH
Q 014053 366 LTTATLVVSAFVVVAGIF--GMNINIELFDEHKSGMQEFLWTVGGGATGSI 414 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiF--GMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v 414 (431)
.|++.++++.+.+++|++ |=|+..- + ++++|.+++++++.+.+
T Consensus 4 ~t~iG~~~~~~~v~~~~~~~gg~~~~~-~-----~~~~~lIV~Ggt~~a~~ 48 (246)
T PRK09109 4 LSLIGLILAFVAIIGGQVLEGGHLGSL-L-----NGPAFLIVIGGTLGAVL 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH-h-----hHHHHHHHHHHHHHHHH
Confidence 788889999999998876 5566542 3 46778888877665443
No 150
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.11 E-value=4.4e+02 Score=21.17 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 181 NLERVRQIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 181 ~Lerlr~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
-..+|..+|+++..+..+++.+++-+.++
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678888999999999998888877665
No 151
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=21.00 E-value=4.7e+02 Score=22.33 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=14.8
Q ss_pred hhHH---HHHHHHHHHHHHHHHHHH
Q 014053 355 KQNH---LLQMGVMLTTATLVVSAF 376 (431)
Q Consensus 355 ~rN~---lmk~~l~LTi~t~i~~~~ 376 (431)
+||- +|.+|++|..+.+.|...
T Consensus 25 rrN~i~~LmSiElmlNAvnl~~Va~ 49 (100)
T COG0713 25 RRNLIVMLMSIELMLNAVNLNFVAF 49 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665 567777777777766544
No 152
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=20.95 E-value=9.2e+02 Score=24.83 Aligned_cols=8 Identities=13% Similarity=-0.085 Sum_probs=3.6
Q ss_pred HHHHHhhc
Q 014053 63 ELQSRILC 70 (431)
Q Consensus 63 ~L~~rL~~ 70 (431)
+..++|+.
T Consensus 30 ~a~~~L~~ 37 (399)
T PRK10573 30 LLYQALQQ 37 (399)
T ss_pred HHHHHHHH
Confidence 34445543
No 153
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=20.79 E-value=1.4e+02 Score=32.78 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=47.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHh--hHhhHHHHHHHHHHHHHHHHHHHHHHHHhHcc-
Q 014053 309 KHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYI-NIML--DDKQNHLLQMGVMLTTATLVVSAFVVVAGIFG- 384 (431)
Q Consensus 309 ~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i-~~~L--d~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFG- 384 (431)
+.+...-+|+-|.+.+++.+.+-..=.+|+.+++.++..- ...+ -..||+-- .-.+.+++...+||.-.||
T Consensus 300 KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~qKk-----~Rkvvaimv~maFi~f~~~~ 374 (655)
T KOG4343|consen 300 KKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRNQKK-----KRKVVAIMVVMAFIIFNYGS 374 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCccccccc-----chhhhhHHHHHHHHHHhccC
Confidence 4555677788888888888877777777777766554310 0001 12233211 2335556666778888888
Q ss_pred -ccCCCcc
Q 014053 385 -MNINIEL 391 (431)
Q Consensus 385 -MN~~~~~ 391 (431)
||+.+.+
T Consensus 375 p~ni~nnl 382 (655)
T KOG4343|consen 375 PMNILNNL 382 (655)
T ss_pred cccccCCc
Confidence 9987754
No 154
>PF06127 DUF962: Protein of unknown function (DUF962); InterPro: IPR009305 This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein P25338 from SWISSPROT has been found to be non-essential for cell growth.
Probab=20.79 E-value=4.9e+02 Score=21.51 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=10.2
Q ss_pred hHHHHHHHHhhHhhHHHHHH
Q 014053 343 DTEDYINIMLDDKQNHLLQM 362 (431)
Q Consensus 343 ~ted~i~~~Ld~~rN~lmk~ 362 (431)
+.+|.+....+.+||.+-+.
T Consensus 3 ~~~~~~~~Y~~~H~~~~n~~ 22 (95)
T PF06127_consen 3 SLEEFFAFYLSYHRNPINRA 22 (95)
T ss_pred CHHHHHHHHHHHcCCHhhHH
Confidence 34555555555555544443
No 155
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=20.77 E-value=3.3e+02 Score=19.77 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=8.2
Q ss_pred HHHHHHHhHccc
Q 014053 374 SAFVVVAGIFGM 385 (431)
Q Consensus 374 ~~~tlIaGiFGM 385 (431)
..+.++++.+|+
T Consensus 9 ~vGg~l~~~lg~ 20 (48)
T PF04226_consen 9 FVGGWLFGLLGI 20 (48)
T ss_pred HHHHHHHHHhcc
Confidence 456677777777
No 156
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=20.71 E-value=4.3e+02 Score=24.97 Aligned_cols=34 Identities=9% Similarity=0.240 Sum_probs=23.6
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccc
Q 014053 351 MLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGM 385 (431)
Q Consensus 351 ~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGM 385 (431)
.++-+||++..+.+.. +.+.+|+++.++.|.++|
T Consensus 89 ~~s~~rN~i~~l~~y~-~~~~~~gl~pl~~g~~~~ 122 (186)
T PF07086_consen 89 LLSLRRNNISLLRLYM-IGSSLFGLLPLIYGAMYY 122 (186)
T ss_pred HHhcccchHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3567899887664433 566777778888887774
No 157
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=20.54 E-value=6.6e+02 Score=22.94 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014053 313 VEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINI 350 (431)
Q Consensus 313 ~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~ 350 (431)
.+.++.-.+.|-.+.+.+-...+.+....+..+....-
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~ 105 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDH 105 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56677777888888888888877777766666555443
No 158
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=20.39 E-value=1.8e+02 Score=25.66 Aligned_cols=52 Identities=23% Similarity=0.401 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q 014053 366 LTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE 431 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl~ 431 (431)
.++.++++..+.++.-+.|+=+...- . +++..+.|+ +.+..-.|+++|+|+.
T Consensus 6 vAlLa~C~l~G~~~GdlLG~llGV~a-------N------VGGVGiAMl-LLI~~~~~l~k~g~l~ 57 (125)
T PF03817_consen 6 VALLAICTLAGVFLGDLLGALLGVKA-------N------VGGVGIAML-LLIFARLWLQKKGLLS 57 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc-------c------cccHHHHHH-HHHHHHHHHHHcCCCC
Confidence 56778888888888888888765421 1 233333333 3345667888898873
No 159
>PRK13682 hypothetical protein; Provisional
Probab=20.39 E-value=90 Score=23.40 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhHccc
Q 014053 369 ATLVVSAFVVVAGIFGM 385 (431)
Q Consensus 369 ~t~i~~~~tlIaGiFGM 385 (431)
++++|.+.++|+|+||.
T Consensus 4 waliFliiA~iA~~lGF 20 (51)
T PRK13682 4 WAIIFLVIALIAAVLGF 20 (51)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57888999999999996
No 160
>TIGR01598 holin_phiLC3 holin, phage phi LC3 family. Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families.
Probab=20.35 E-value=1.1e+02 Score=24.88 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhHccccCC
Q 014053 365 MLTTATLVVSAFVVVAGIFGMNIN 388 (431)
Q Consensus 365 ~LTi~t~i~~~~tlIaGiFGMN~~ 388 (431)
.++++.+++.+.--++++||+.+.
T Consensus 13 w~ali~al~l~~q~v~~~fG~~~~ 36 (78)
T TIGR01598 13 LIALLGALFLAIQSILDNFGVLWL 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHH
Confidence 478899999999999999999765
No 161
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=20.32 E-value=34 Score=23.43 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHc
Q 014053 416 LYVVAIAWCKHK 427 (431)
Q Consensus 416 i~~~~~~y~krk 427 (431)
+.++.++++|||
T Consensus 28 ~~~~~~~~~krr 39 (39)
T PF00746_consen 28 LLGGGLLLVKRR 39 (39)
T ss_dssp ------------
T ss_pred HHHHHHHheecC
Confidence 334456666654
No 162
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=20.26 E-value=4.9e+02 Score=21.32 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=9.6
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHH
Q 014053 352 LDDKQNHLLQMGVMLTTATLVVS 374 (431)
Q Consensus 352 Ld~~rN~lmk~~l~LTi~t~i~~ 374 (431)
|-.+|+++.-. ++++.+++-
T Consensus 10 L~r~r~r~~~~---l~~i~l~~y 29 (91)
T PF04341_consen 10 LVRRRRRLAWP---LSAIFLVLY 29 (91)
T ss_pred HHHHHHHHHHH---HHHHHHHHH
Confidence 34456665444 554444433
No 163
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.24 E-value=7.4e+02 Score=24.71 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=60.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCch
Q 014053 136 VLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKS-RLVAITGRVQKVRDELEHLLDDDE 214 (431)
Q Consensus 136 ~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~-~L~~l~~rv~~vr~~l~~lLddD~ 214 (431)
.+=-||...|--.+.-...|+.++..|+..+..+-++|.-=.|... .=.++|. .+..|.+.++.+++.-.+=||+=+
T Consensus 67 ~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD--~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~ 144 (258)
T PF15397_consen 67 QAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD--HEYPVKAVQIANLVRQLQQLKDSQQDELDELN 144 (258)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888889999999999999999999988888776642111111 1124555 677788888888888777777777
Q ss_pred hHHhhhhhH
Q 014053 215 DMAEMYLTE 223 (431)
Q Consensus 215 dm~~m~Lt~ 223 (431)
.|..+.+..
T Consensus 145 e~~~~el~~ 153 (258)
T PF15397_consen 145 EMRQMELAS 153 (258)
T ss_pred HHHHHHHHH
Confidence 776666554
No 164
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.23 E-value=2.8e+02 Score=32.48 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=29.7
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCC
Q 014053 350 IMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINI 389 (431)
Q Consensus 350 ~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~ 389 (431)
+.|+.+.=+.+|+++.++++--+++++-...+|++-=+..
T Consensus 837 i~LSrkt~~rIk~N~~~A~~yn~~~IpIAagvF~P~~~~L 876 (951)
T KOG0207|consen 837 IDLSRKTVKRIKLNFVWALIYNLVGIPIAAGVFAPFGIVL 876 (951)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhhhheecccCCcccc
Confidence 4466666677788888999998898888888877655433
No 165
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.20 E-value=2.6e+02 Score=31.19 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 014053 183 ERVRQIKSRLVAITGRVQKVRDELEHLLDDDED 215 (431)
Q Consensus 183 erlr~lK~~L~~l~~rv~~vr~~l~~lLddD~d 215 (431)
+.+++++.++.++++..+.+++.++++.++-.+
T Consensus 215 ~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~ 247 (646)
T PRK05771 215 ELIREIKEELEEIEKERESLLEELKELAKKYLE 247 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666554443
No 166
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=20.20 E-value=1.9e+02 Score=27.70 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhHccc
Q 014053 366 LTTATLVVSAFVVVAGIFGM 385 (431)
Q Consensus 366 LTi~t~i~~~~tlIaGiFGM 385 (431)
+|...+..++..+++|++||
T Consensus 40 ~S~l~~vyG~~l~~~~~~~~ 59 (196)
T PF06770_consen 40 CSGLVFVYGPLLLLVTTWGV 59 (196)
T ss_pred ehHHHHHHHHHHHHHHHHHH
Confidence 66778888899999999998
No 167
>PF09583 Phageshock_PspG: Phage shock protein G (Phageshock_PspG); InterPro: IPR014318 This protein previously was designated yjbO in Escherichia coli. It is found only in genomes that have the phage shock operon (psp), but it is only rarely encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins and heat shock.
Probab=20.12 E-value=1e+02 Score=24.20 Aligned_cols=16 Identities=31% Similarity=0.721 Sum_probs=11.5
Q ss_pred HHHHHHHhHccccCCC
Q 014053 374 SAFVVVAGIFGMNINI 389 (431)
Q Consensus 374 ~~~tlIaGiFGMN~~~ 389 (431)
....+++|.||+=++-
T Consensus 32 ~~vm~l~Gm~~lviKL 47 (65)
T PF09583_consen 32 FAVMFLGGMFGLVIKL 47 (65)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456778888887775
No 168
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.09 E-value=1.2e+03 Score=25.67 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Q 014053 151 ACSCLENEAKTLEQEAHPALDKLTSK--ISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDM 216 (431)
Q Consensus 151 ~~~~Le~e~~~Le~~~~~~Ld~L~~~--vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm 216 (431)
....++.+++.++.....+.+.+..+ +-+.-.+++..+..+|..+......+.+.|..+=.|+.+-
T Consensus 345 ~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~A 412 (560)
T PF06160_consen 345 IVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEA 412 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888888888888754 3345667888899999999999999999998887776554
Done!