Query 014053
Match_columns 431
No_of_seqs 212 out of 1380
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:39:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 8.7E-56 3E-60 429.3 23.4 216 1-359 41-261 (261)
2 4ev6_A Magnesium transport pro 100.0 2.7E-26 9.3E-31 230.7 29.3 230 34-430 110-339 (339)
3 2iub_A CORA, divalent cation t 99.9 2E-26 6.7E-31 233.8 25.8 183 143-430 181-363 (363)
4 4egw_A Magnesium transport pro 98.9 7.7E-08 2.6E-12 93.5 20.1 171 34-361 110-280 (280)
5 3ck6_A Putative membrane trans 98.3 1.9E-05 6.5E-10 75.1 15.5 156 37-360 97-252 (252)
6 3nvo_A Zinc transport protein 98.2 4.9E-05 1.7E-09 72.6 17.2 114 33-213 104-217 (264)
7 2bbh_A Divalent cation transpo 97.1 0.0015 5.1E-08 62.4 8.9 68 142-213 175-242 (269)
8 2hn1_A CORA, magnesium and cob 96.7 0.0028 9.6E-08 60.5 7.4 115 34-213 128-242 (266)
9 3swf_A CGMP-gated cation chann 78.8 7.3 0.00025 30.2 7.1 49 148-204 5-53 (74)
10 2iub_A CORA, divalent cation t 65.7 1E+02 0.0036 30.0 18.4 95 319-426 258-356 (363)
11 3swy_A Cyclic nucleotide-gated 64.9 19 0.00066 25.3 6.0 44 148-199 3-46 (46)
12 2l2t_A Receptor tyrosine-prote 62.7 11 0.00038 26.3 4.4 14 415-428 25-38 (44)
13 2jwa_A Receptor tyrosine-prote 62.4 12 0.00041 26.1 4.5 20 410-429 21-40 (44)
14 2ks1_B Epidermal growth factor 61.8 9.1 0.00031 26.7 3.8 14 415-428 26-39 (44)
15 3v86_A De novo design helix; c 57.4 21 0.00071 21.6 4.3 25 185-209 2-26 (27)
16 2j69_A Bacterial dynamin-like 52.8 2.2E+02 0.0074 30.5 14.8 31 183-213 366-396 (695)
17 2k1k_A Ephrin type-A receptor 50.4 12 0.00042 25.2 2.8 8 420-427 30-37 (38)
18 3p8c_D Wiskott-aldrich syndrom 47.3 54 0.0018 31.6 7.9 58 142-200 24-81 (279)
19 3s84_A Apolipoprotein A-IV; fo 45.6 2E+02 0.0069 27.2 12.4 30 312-341 111-141 (273)
20 2knc_A Integrin alpha-IIB; tra 36.6 34 0.0012 24.8 3.6 7 422-428 37-43 (54)
21 1txp_A HnRNP C, heterogeneous 32.3 47 0.0016 20.8 3.1 24 186-209 2-25 (28)
22 2k21_A Potassium voltage-gated 32.1 35 0.0012 29.1 3.5 32 398-429 49-80 (138)
23 2k1a_A Integrin alpha-IIB; sin 32.1 70 0.0024 21.9 4.4 6 402-407 10-15 (42)
24 1iij_A ERBB-2 receptor protein 31.9 20 0.00067 23.8 1.5 17 412-428 19-35 (35)
25 2l8s_A Integrin alpha-1; trans 31.7 40 0.0014 24.5 3.2 7 422-428 34-40 (54)
26 4ev6_A Magnesium transport pro 29.9 3.7E+02 0.013 25.6 16.3 96 327-429 239-335 (339)
27 4dnd_A Syntaxin-10, SYN10; str 28.1 2.7E+02 0.0092 23.4 9.3 64 140-206 64-128 (130)
28 3hhm_B NISH2 P85alpha; PI3KCA, 27.5 3.1E+02 0.011 27.2 10.2 67 142-209 161-231 (373)
29 1nfn_A Apolipoprotein E3; lipi 27.4 99 0.0034 27.8 6.0 71 142-213 58-129 (191)
30 1vcs_A Vesicle transport throu 25.6 2.6E+02 0.0088 22.3 8.0 24 180-203 71-94 (102)
31 2knc_B Integrin beta-3; transm 23.8 63 0.0021 25.1 3.4 24 402-425 10-33 (79)
32 1lrz_A FEMA, factor essential 23.4 3.2E+02 0.011 27.0 9.5 58 149-206 246-304 (426)
33 2lf0_A Uncharacterized protein 23.1 1.2E+02 0.004 25.6 5.0 74 155-228 8-82 (123)
34 3zcc_A HAMP, osmolarity sensor 23.0 2.3E+02 0.008 21.0 6.9 31 138-168 36-66 (114)
35 2ca5_A MXIH; transport protein 22.6 2.5E+02 0.0086 22.1 6.5 65 148-212 12-81 (85)
36 3aqp_A Probable secdf protein- 22.6 4.1E+02 0.014 28.6 10.8 10 420-429 719-728 (741)
37 3a7m_A Flagellar protein FLIT; 21.5 1.1E+02 0.0039 25.5 4.8 56 147-219 21-81 (122)
38 2gyq_A YCFI, putative structur 21.3 4.2E+02 0.014 23.2 9.1 54 157-212 22-75 (173)
39 3onj_A T-snare VTI1; helix, HA 21.1 3.1E+02 0.011 21.6 8.2 20 183-202 72-92 (97)
40 1m1j_A Fibrinogen alpha subuni 21.0 6.9E+02 0.024 25.7 11.2 29 325-353 132-160 (491)
41 1t3u_A Conserved hypothetical 20.5 3.2E+02 0.011 21.5 7.9 64 146-215 26-100 (104)
42 3ghg_A Fibrinogen alpha chain; 20.3 7.5E+02 0.026 25.8 12.1 39 316-354 122-160 (562)
43 1deq_A Fibrinogen (alpha chain 20.3 3E+02 0.01 27.6 8.2 19 184-202 135-153 (390)
44 2wuj_A Septum site-determining 20.0 1.6E+02 0.0056 21.1 4.8 38 309-346 18-55 (57)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-56 Score=429.29 Aligned_cols=216 Identities=31% Similarity=0.465 Sum_probs=198.2
Q ss_pred CccCCCCCCcccccCCCC-CCCceeeecCCeEEeecccceeeeecCeEEEecCCCCCch----hHHHHHHHHhhcccccc
Q 014053 1 MRRTGLPARDLRILDPLL-SYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVV----PFVEELQSRILCHYQAT 75 (431)
Q Consensus 1 ~r~~gL~~RDLR~lDp~~-s~pssIlvR~~aIlvnle~IraII~~d~vllf~~~~~~~~----~f~~~L~~rL~~~~~~~ 75 (431)
|+++||+|||||+|||++ +++|+|++|++||||||+||||||++|+|++||+.++.+. .|+++|+.|+...
T Consensus 41 ~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~~~~~~~~~~f~~~l~~~l~~~---- 116 (261)
T 3rkg_A 41 LTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSST---- 116 (261)
T ss_dssp HHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSCHHHHHHHHHHHHHHHHHHHCS----
T ss_pred HHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCCchhhhhHHHHHHHHHHHhccC----
Confidence 588999999999999986 5666799999999999999999999999999999987665 5899999998741
Q ss_pred ccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHH
Q 014053 76 KSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCL 155 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~L 155 (431)
..+.+|||||||||||.++|+.|
T Consensus 117 ---------------------------------------------------------~~~~lPFEfraLEa~L~~v~~~L 139 (261)
T 3rkg_A 117 ---------------------------------------------------------KNNSQFYEHRALESIFINVMSAL 139 (261)
T ss_dssp ---------------------------------------------------------SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------CCCCCChHHHHHHHHHHHHHHHH
Confidence 02468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCC
Q 014053 156 ENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTS 235 (431)
Q Consensus 156 e~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~ 235 (431)
+++++.++..+.++|++|++++++.+|++|+..|++|+.+.+||+.||++|+++||||+||++||||++.
T Consensus 140 e~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~---------- 209 (261)
T 3rkg_A 140 ETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKK---------- 209 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred CCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcccccccccCCCccHHH
Q 014053 236 SINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEE 315 (431)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e 315 (431)
+..++|+|
T Consensus 210 ------------------------------------------------------------------------~~~~d~eE 217 (261)
T 3rkg_A 210 ------------------------------------------------------------------------SPKDNFSD 217 (261)
T ss_dssp ------------------------------------------------------------------------CTTSCCHH
T ss_pred ------------------------------------------------------------------------CCccchHH
Confidence 13568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHH
Q 014053 316 LEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL 359 (431)
Q Consensus 316 ~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~l 359 (431)
+|||||+|++|+|+++++++.++++|++|||+|++.||++||++
T Consensus 218 lEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L 261 (261)
T 3rkg_A 218 LEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL 261 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999975
No 2
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.7e-26 Score=230.67 Aligned_cols=230 Identities=17% Similarity=0.133 Sum_probs=179.3
Q ss_pred ecccceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 014053 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQF 113 (431)
Q Consensus 34 nle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (431)
..++|..+++.+.++.+...+. +.++.+++++..+....
T Consensus 110 ~~~~v~i~l~~~~lITv~~~~~---~~~~~~~~~~~~~~~~~-------------------------------------- 148 (339)
T 4ev6_A 110 TTTSLGIYIKNNLLLTIHSDKI---KAIGRLHKLISTKKPRI-------------------------------------- 148 (339)
T ss_dssp CCCCCEEEEETTEEEEEESSCC---HHHHHHHHHSSSSSSCC--------------------------------------
T ss_pred ceEEEEEEEECCeeEEeecCCc---chhHHHHHHHHcCCCcc--------------------------------------
Confidence 4567899999999999987654 56778888876421100
Q ss_pred ccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHH
Q 014053 114 EDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLV 193 (431)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~ 193 (431)
....-|- .+|-++++.++..+..-++.++..+..+.+.+..+.+...++++..+|+.+.
T Consensus 149 -------------------~~~~~~~--~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~ 207 (339)
T 4ev6_A 149 -------------------VFERGIG--FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLV 207 (339)
T ss_dssp -------------------CCCSCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHH
T ss_pred -------------------ccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 0000121 3455566666666666668899999999888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccc
Q 014053 194 AITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEA 273 (431)
Q Consensus 194 ~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (431)
.+++.+.+.++++..+...+.. .+
T Consensus 208 ~lrr~l~~~~~vl~~L~~~~~~----~~---------------------------------------------------- 231 (339)
T 4ev6_A 208 YFHKSLIANRDVLVLLKRKYLP----IT---------------------------------------------------- 231 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHSCBT----TB----------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHhhcccc----cc----------------------------------------------------
Confidence 9999999999999887654321 00
Q ss_pred cccccccccccccccccccccCCCCcccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 014053 274 DFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLD 353 (431)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld 353 (431)
.++....++..+.++..+.+.++.+++.+.++.+.+...++
T Consensus 232 ---------------------------------------~~~~~~~l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is 272 (339)
T 4ev6_A 232 ---------------------------------------TKEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLEN 272 (339)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223345555667888899999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014053 354 DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 354 ~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl 430 (431)
+++|++||+ ||++|++|+|+|+|||+|||||+++|+. ++++|||++++++++ +++++++||||||||
T Consensus 273 ~~~N~~mk~---LTiit~IflP~T~IaGiyGMNf~~mPel---~~~~gy~~~l~~m~~----~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 273 IKMNQIMKI---LTMVTTIFAVPMWITGIYGMNFSYLPLA---NNPQGFWLVMALMVV----IIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHHH---HHHHHHHSSHHHHHHHHTTCCCSCCTTS---SCTTHHHHHHHHHHH----HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhccCcCCCCCCc---cCchHHHHHHHHHHH----HHHHHHHHHHHcCCC
Confidence 999999999 9999999999999999999999998874 689999987765544 445789999999997
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=99.95 E-value=2e-26 Score=233.80 Aligned_cols=183 Identities=17% Similarity=0.225 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhh
Q 014053 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLT 222 (431)
Q Consensus 143 aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt 222 (431)
++-++++.++..+..-++.++..+..+.+.+..+.+...++++..+|+.+..+.+-+.+.+++++.+...+.. .++
T Consensus 181 ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~----~~~ 256 (363)
T 2iub_A 181 LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPP----LIE 256 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS----SCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cCC
Confidence 4445555555555555688999999999998877777889999999999999999999999999999875422 111
Q ss_pred HHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcccc
Q 014053 223 EKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTST 302 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 302 (431)
T Consensus 257 -------------------------------------------------------------------------------- 256 (363)
T 2iub_A 257 -------------------------------------------------------------------------------- 256 (363)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014053 303 THSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGI 382 (431)
Q Consensus 303 ~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGi 382 (431)
++....++.-..++..+.+.++.+++.+..+.+.+.+.+++++|++||+ ||++|++|+|+|+|||+
T Consensus 257 -----------~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~---LTiit~IflP~T~IaGi 322 (363)
T 2iub_A 257 -----------KETVPYFRDVYDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKV---LTIIATIFMPLTFIAGI 322 (363)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTS
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 1222334444557888999999999999999999999999999999999 99999999999999999
Q ss_pred ccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 014053 383 FGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL 430 (431)
Q Consensus 383 FGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl 430 (431)
|||||+++|+ .++++|||+++++++ ++++++++||||||||
T Consensus 323 yGMNf~~mPe---l~~~~Gy~~~l~~m~----~i~~~~~~~Fkrk~Wl 363 (363)
T 2iub_A 323 YGMNFEYMPE---LRWKWGYPVVLAVMG----VIAVIMVVYFKKKKWL 363 (363)
T ss_dssp CC-----------------CHHHHHHHH----HHHHHHHTTTTSCC--
T ss_pred hcccCCCCCc---ccCcHHHHHHHHHHH----HHHHHHHHHHHHcccC
Confidence 9999999886 368899988766554 4455789999999997
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=98.92 E-value=7.7e-08 Score=93.55 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=120.3
Q ss_pred ecccceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 014053 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQF 113 (431)
Q Consensus 34 nle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (431)
..++|..+++.+.|+.|...+. +.++.+++|+........
T Consensus 110 ~t~~v~i~l~~~~lITv~~~~~---~~~~~v~~~l~~~~~~~~------------------------------------- 149 (280)
T 4egw_A 110 TTTSLGIYIKNNLLLTIHSDKI---KAIGRLHKLISTKKPRIV------------------------------------- 149 (280)
T ss_dssp EEEEEEEEEETTEEEEEESSCC---HHHHHHHHHHHHSCCSSS-------------------------------------
T ss_pred eeeeEEEEEECCEEEEEecCCc---chHHHHHHHHHhcCcccc-------------------------------------
Confidence 4567899999999999987655 677888888875311100
Q ss_pred ccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHH
Q 014053 114 EDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLV 193 (431)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~ 193 (431)
...+++.+-| .+|+.+.+.+...+ +.++..+..+.+.+.++.+...++++..+|+.|.
T Consensus 150 ----------------~~~g~~~ll~--~lld~ivd~y~~~l----~~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~ 207 (280)
T 4egw_A 150 ----------------FERGIGFLLY--HILNEITRSYSRIL----MNLEDELEELEDKLLAGYDREVMEKILGLRKTLV 207 (280)
T ss_dssp ----------------CTTTTTHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred ----------------cccCHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 0112223333 55666666666555 8889999999999988888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccc
Q 014053 194 AITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEA 273 (431)
Q Consensus 194 ~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (431)
.+++-+.+.++++..+...+.. .++
T Consensus 208 ~lrr~l~p~~~vl~~L~~~~~~----~~~--------------------------------------------------- 232 (280)
T 4egw_A 208 YFHKSLIANRDVLVLLKRKYLP----ITT--------------------------------------------------- 232 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCS----SCC---------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHhcCcc----cCC---------------------------------------------------
Confidence 9999999999999998765422 000
Q ss_pred cccccccccccccccccccccCCCCcccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 014053 274 DFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLD 353 (431)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld 353 (431)
++....++.-+.++.++.+.++.+++.+..+.+.+.+.++
T Consensus 233 ----------------------------------------~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d~~~s~is 272 (280)
T 4egw_A 233 ----------------------------------------KEDRENFEDLYYDTLQLIDMSATYREVLTSMMDITLSLEN 272 (280)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333444456788889999999999999999999999
Q ss_pred HhhHHHHH
Q 014053 354 DKQNHLLQ 361 (431)
Q Consensus 354 ~~rN~lmk 361 (431)
+++|++||
T Consensus 273 ~~~N~iMK 280 (280)
T 4egw_A 273 IKMNQIMK 280 (280)
T ss_dssp --------
T ss_pred HHHHHhhC
Confidence 99999997
No 5
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=98.26 E-value=1.9e-05 Score=75.07 Aligned_cols=156 Identities=11% Similarity=0.044 Sum_probs=105.5
Q ss_pred cceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 014053 37 HIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDE 116 (431)
Q Consensus 37 ~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (431)
.|..+++.+.|+.+...+. +.++.+++|+.....
T Consensus 97 ~l~i~l~~~~lITvr~~~~---~~~~~v~~~l~~~~~------------------------------------------- 130 (252)
T 3ck6_A 97 SIRILYFQGALISTRKIPS---RAIMEIRQALAEHKG------------------------------------------- 130 (252)
T ss_dssp EEEEEEETTEEEEEESSCC---HHHHHHHHHHHTTCS-------------------------------------------
T ss_pred EEEEEEeCCEEEEEeCCCc---chHHHHHHHHHhCCC-------------------------------------------
Confidence 4677999999999987654 677888888853100
Q ss_pred hhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHH
Q 014053 117 NEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAIT 196 (431)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~ 196 (431)
. .-|. .+|-++++.+...+..-++.++..+..+.+. ...++++..+|+.+..++
T Consensus 131 --------------~----~~~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~------~~~~~~l~~lrr~l~~lr 184 (252)
T 3ck6_A 131 --------------P----KSLA--SLLNQIIEGLNGKIDLYLDTIEETLNEFDVN------DESTYNHIAAQKALISIK 184 (252)
T ss_dssp --------------C----SSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT------CGGGCCHHHHHHHHHHHH
T ss_pred --------------C----CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------chHHHHHHHHHHHHHHHH
Confidence 0 0122 2333555555555544456667666665544 235788999999999999
Q ss_pred HHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCCCccchHHhhhhccccchhhhhhhhcCCCCCcccccc
Q 014053 197 GRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQ 276 (431)
Q Consensus 197 ~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (431)
+-+.+.|+++..++..+..+ ....
T Consensus 185 r~l~p~r~~l~~L~r~~~~~-----~~~~--------------------------------------------------- 208 (252)
T 3ck6_A 185 RFIRPQQYAIRDLIESESEL-----VTSR--------------------------------------------------- 208 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCHH-----HHTS---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCCCC-----CHHH---------------------------------------------------
Confidence 99999999999998764321 1000
Q ss_pred ccccccccccccccccccCCCCcccccccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhh
Q 014053 277 NTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ 356 (431)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~r 356 (431)
...+..-+.++..+.+.++.+++.+..+.+.+...+++++
T Consensus 209 ----------------------------------------~~~~rdv~d~~~~~~e~i~~~re~~~~l~d~~~s~~s~~~ 248 (252)
T 3ck6_A 209 ----------------------------------------PHQYRFAHNNITRINETIEFYLGEVALFQDEIKHNRDEKT 248 (252)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233347888899999999999999999999999999
Q ss_pred HHHH
Q 014053 357 NHLL 360 (431)
Q Consensus 357 N~lm 360 (431)
|++|
T Consensus 249 N~~m 252 (252)
T 3ck6_A 249 NKNS 252 (252)
T ss_dssp ----
T ss_pred ccCC
Confidence 9987
No 6
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=98.21 E-value=4.9e-05 Score=72.62 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=84.7
Q ss_pred eecccceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCC
Q 014053 33 INLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQ 112 (431)
Q Consensus 33 vnle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (431)
+..++|..+++.+.|+.|..... ++++.+++|+.....
T Consensus 104 ~~~~~v~~~l~~~~lITv~~~~~---~~~~~v~~rl~~~~~--------------------------------------- 141 (264)
T 3nvo_A 104 DQLVAMRLYMDERFIVSTRQRKV---LALDDVVSDLQEGTG--------------------------------------- 141 (264)
T ss_dssp --CCEEEEEECSSEEEEEESSCC---HHHHHHHHHHHTTCS---------------------------------------
T ss_pred cceEEEEEEEeCCEEEEEecCCc---CcHHHHHHHHHhCCC---------------------------------------
Confidence 34678999999999999987644 678889899864210
Q ss_pred CccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHH
Q 014053 113 FEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRL 192 (431)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L 192 (431)
. .-|. .+|-++++.++..+..-++.++..+..+.+.+..+ +...+.++..+|+.+
T Consensus 142 ------------------~----~~~~--~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l 196 (264)
T 3nvo_A 142 ------------------P----VDCG--GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ-QIPPRGFLALLRKQL 196 (264)
T ss_dssp ------------------C----SSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCTTHHHHHHHHH
T ss_pred ------------------C----CCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHH
Confidence 0 0022 45556666666666666688999999988888776 777899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCc
Q 014053 193 VAITGRVQKVRDELEHLLDDD 213 (431)
Q Consensus 193 ~~l~~rv~~vr~~l~~lLddD 213 (431)
..|.+-+.+.++++.++...+
T Consensus 197 ~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 197 IVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhHHHHHHHHHhCC
Confidence 999999999999999998865
No 7
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=97.08 E-value=0.0015 Score=62.38 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 014053 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDD 213 (431)
Q Consensus 142 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD 213 (431)
.+|+.+.+.+... ++.++..+..+.+.+..+.+...++++..+|+.+..|++-+.+.++++..++..+
T Consensus 175 ~lld~ivd~y~~~----l~~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 175 SLIDALVDDYFVL----LEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555555444 4888888888888877666678899999999999999999999999999999764
No 8
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.0028 Score=60.49 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=84.0
Q ss_pred ecccceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 014053 34 NLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQF 113 (431)
Q Consensus 34 nle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (431)
..++|..+++.+.|+.|...+. +.++.+++|+... ... .
T Consensus 128 ~~~~v~~~l~~~~lITv~~~~~---~~~~~v~~rl~~~-~~~-----~-------------------------------- 166 (266)
T 2hn1_A 128 EIDQLSLVLKKNLVATFEEREY---WILDSIRSRLKSG-GRM-----R-------------------------------- 166 (266)
T ss_dssp EEEEEEEEEETTEEEEEESSSS---CSTHHHHHHHHSS-SHH-----H--------------------------------
T ss_pred ceEEEEEEEECCEEEEEEcCCC---ChHHHHHHHHHhC-Cch-----h--------------------------------
Confidence 4567899999999999987553 3457788887642 000 0
Q ss_pred ccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHH
Q 014053 114 EDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLV 193 (431)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~ 193 (431)
..+ |. -+|-++|+.++..+..-++.++..+..+.+.+..+.+ ..++++..+|+.+.
T Consensus 167 -----------------~~~----~~--~ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~l~~l~~lrr~l~ 222 (266)
T 2hn1_A 167 -----------------KLA----GD--YLAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TLIGKIHSLKREIL 222 (266)
T ss_dssp -----------------HSC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHH
T ss_pred -----------------hcC----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHH
Confidence 000 11 2344555555555555558889999998888876666 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCc
Q 014053 194 AITGRVQKVRDELEHLLDDD 213 (431)
Q Consensus 194 ~l~~rv~~vr~~l~~lLddD 213 (431)
.|++-+.+.++++..++..+
T Consensus 223 ~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 223 AFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999865
No 9
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.80 E-value=7.3 Score=30.23 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 148 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRD 204 (431)
Q Consensus 148 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~ 204 (431)
+++-+..|+..++.|+.....+|.+.++. =..||+|++.|+.++..+++
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~ 53 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLID 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCC
Confidence 56677888888899999999988877653 34789999999999887544
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=65.69 E-value=1e+02 Score=30.05 Aligned_cols=95 Identities=19% Similarity=0.272 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh----HhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccc
Q 014053 319 LLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLD----DKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDE 394 (431)
Q Consensus 319 LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld----~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~ 394 (431)
-...|++++ .+++.++.+.++...+.++..++ ..-|+.-++ +-++|++.+++...+=+-|. =.|=|+
T Consensus 258 ~~~~~lrDv---~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~i---mk~LTiit~IflP~T~IaGi--yGMNf~- 328 (363)
T 2iub_A 258 ETVPYFRDV---YDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEV---MKVLTIIATIFMPLTFIAGI--YGMNFE- 328 (363)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTS--CC-----
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh--hcccCC-
Confidence 334455554 56666666666666666665554 444555444 88888888888888888885 223242
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 395 HKSGMQEFLWTVGGGATGSIFLYVVAIAWCKH 426 (431)
Q Consensus 395 ~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~kr 426 (431)
++++..|-+|. .+++++++++.++.+.+
T Consensus 329 ---~mPel~~~~Gy-~~~l~~m~~i~~~~~~~ 356 (363)
T 2iub_A 329 ---YMPELRWKWGY-PVVLAVMGVIAVIMVVY 356 (363)
T ss_dssp -------------C-HHHHHHHHHHHHHHHTT
T ss_pred ---CCCcccCcHHH-HHHHHHHHHHHHHHHHH
Confidence 46666666653 33445555555555544
No 11
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=64.94 E-value=19 Score=25.30 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHH
Q 014053 148 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRV 199 (431)
Q Consensus 148 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv 199 (431)
+++-+..|+.-++.|+.....+|.+.++. =..+|+|++.++.+|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ss--------q~KlKqRit~lE~~v 46 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNAT--------QMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC
Confidence 46677888888888888888888777653 246888988888764
No 12
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=62.68 E-value=11 Score=26.27 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHcC
Q 014053 415 FLYVVAIAWCKHKR 428 (431)
Q Consensus 415 ~i~~~~~~y~krk~ 428 (431)
++.++.++|+|||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 34444556666664
No 13
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=62.35 E-value=12 Score=26.13 Aligned_cols=20 Identities=20% Similarity=-0.006 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHcCc
Q 014053 410 ATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 410 ~~~~v~i~~~~~~y~krk~w 429 (431)
+++.+++.++..+|+|||+.
T Consensus 21 vll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhheehhhh
Confidence 33445555667788888864
No 14
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=61.77 E-value=9.1 Score=26.71 Aligned_cols=14 Identities=0% Similarity=0.026 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHcC
Q 014053 415 FLYVVAIAWCKHKR 428 (431)
Q Consensus 415 ~i~~~~~~y~krk~ 428 (431)
++.++.++|+|||+
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 34445566666664
No 15
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=57.39 E-value=21 Score=21.64 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 185 VRQIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 185 lr~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
+.++|..+.++++.|+.+++++.++
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4578888889999999888887764
No 16
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=52.83 E-value=2.2e+02 Score=30.52 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 014053 183 ERVRQIKSRLVAITGRVQKVRDELEHLLDDD 213 (431)
Q Consensus 183 erlr~lK~~L~~l~~rv~~vr~~l~~lLddD 213 (431)
+++..++..+..+....+.+++.|.++.++-
T Consensus 366 ~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 396 (695)
T 2j69_A 366 KRIDSVEPEFNKLTGIRDEFQKEIINTRDTQ 396 (695)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777777666543
No 17
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=50.41 E-value=12 Score=25.16 Aligned_cols=8 Identities=0% Similarity=0.289 Sum_probs=3.3
Q ss_pred HHHHHHHc
Q 014053 420 AIAWCKHK 427 (431)
Q Consensus 420 ~~~y~krk 427 (431)
+.+|++||
T Consensus 30 l~~~~~rr 37 (38)
T 2k1k_A 30 ILVFRSRR 37 (38)
T ss_dssp HHHHHHCC
T ss_pred HHHHHeec
Confidence 33444444
No 18
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=47.30 E-value=54 Score=31.58 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHH
Q 014053 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQ 200 (431)
Q Consensus 142 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~ 200 (431)
..||++-.....-+-+++..|...+..+..+|.+.+.. --+|+..|+.|+.+|+.+|.
T Consensus 24 ~eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~~~-~~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 24 NELECVTNISLANIIRQLSSLSKYAEDIFGELFNEAHS-FSFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcc
Confidence 35888888888888889999999999999999775422 22344455555555444443
No 19
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=45.55 E-value=2e+02 Score=27.19 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014053 312 DVEELEMLLEAYFVQI-DGTLNKLSTLREYV 341 (431)
Q Consensus 312 d~~e~E~LLE~y~~~i-d~i~~~l~~l~e~i 341 (431)
+.+++...|..|..++ +.+..+++.+++.+
T Consensus 111 ~veelk~~L~Py~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 111 NVEELKGRLTPYADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666665554 33444455554443
No 20
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.61 E-value=34 Score=24.84 Aligned_cols=7 Identities=29% Similarity=0.601 Sum_probs=4.2
Q ss_pred HHHHHcC
Q 014053 422 AWCKHKR 428 (431)
Q Consensus 422 ~y~krk~ 428 (431)
.|||||+
T Consensus 37 GFFkR~~ 43 (54)
T 2knc_A 37 GFFKRNR 43 (54)
T ss_dssp HHTTTTC
T ss_pred CcccCCC
Confidence 5666664
No 21
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=32.26 E-value=47 Score=20.77 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 186 RQIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 186 r~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
..+|+.|+.++.+|..+-+-|+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457888888888888887777765
No 22
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=32.13 E-value=35 Score=29.13 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 014053 398 GMQEFLWTVGGGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 398 ~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~w 429 (431)
+..++.++..++.+.+++++.+|+.|.|-||.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhc
Confidence 44556666666666677778889999998863
No 23
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=32.12 E-value=70 Score=21.94 Aligned_cols=6 Identities=17% Similarity=0.723 Sum_probs=2.6
Q ss_pred HHHHHH
Q 014053 402 FLWTVG 407 (431)
Q Consensus 402 F~~v~~ 407 (431)
.|++++
T Consensus 10 ~wiIi~ 15 (42)
T 2k1a_A 10 IWWVLV 15 (42)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 444443
No 24
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.85 E-value=20 Score=23.84 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHcC
Q 014053 412 GSIFLYVVAIAWCKHKR 428 (431)
Q Consensus 412 ~~v~i~~~~~~y~krk~ 428 (431)
+.+++.++..+|.|||+
T Consensus 19 l~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 19 LFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHhheEEeecC
Confidence 33444455677888875
No 25
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.72 E-value=40 Score=24.48 Aligned_cols=7 Identities=14% Similarity=0.206 Sum_probs=4.2
Q ss_pred HHHHHcC
Q 014053 422 AWCKHKR 428 (431)
Q Consensus 422 ~y~krk~ 428 (431)
.|||||+
T Consensus 34 GFFKR~~ 40 (54)
T 2l8s_A 34 GFFKRPL 40 (54)
T ss_dssp HHTTSCC
T ss_pred CcccCCC
Confidence 5666664
No 26
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=29.86 E-value=3.7e+02 Score=25.64 Aligned_cols=96 Identities=15% Similarity=0.083 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHH-HHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHH
Q 014053 327 IDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL-LQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWT 405 (431)
Q Consensus 327 id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~l-mk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v 405 (431)
++.+.+++.++.+.++...+.++..++...+.+ .+.+-.+-++|++.+++...+=+-|. =.|=|+ ++++..|-
T Consensus 239 l~dv~~~~~~l~e~~~~~~e~l~~l~d~~~s~is~~~N~~mk~LTiit~IflP~T~IaGi--yGMNf~----~mPel~~~ 312 (339)
T 4ev6_A 239 FEDLYYDTLQLIDMSATYREVLTSMMDITLSLENIKMNQIMKILTMVTTIFAVPMWITGI--YGMNFS----YLPLANNP 312 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH--TTCCCS----CCTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCcCC----CCCCccCc
Confidence 344566777777777777777766665443332 12233388888888877777777774 233242 45555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Q 014053 406 VGGGATGSIFLYVVAIAWCKHKRL 429 (431)
Q Consensus 406 ~~~~~~~~v~i~~~~~~y~krk~w 429 (431)
+|. +++++++++++++.+.+=|+
T Consensus 313 ~gy-~~~l~~m~~~~~~~~~~fkr 335 (339)
T 4ev6_A 313 QGF-WLVMALMVVIIMIFVYIFRR 335 (339)
T ss_dssp THH-HHHHHHHHHHHHHHHHHHHT
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHH
Confidence 543 33445666666666655443
No 27
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.09 E-value=2.7e+02 Score=23.41 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 140 EFVALEACLEAACSCLENEAKTLEQEAHPALDKLTS-KISTLNLERVRQIKSRLVAITGRVQKVRDEL 206 (431)
Q Consensus 140 El~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~-~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l 206 (431)
|+.-+-.=|...|..++..+.+|+..+.-+...=.+ +++... |.+=|+-+..++.+|..+++.|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~E---i~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGD---LQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 556677777888888888888888888776532211 344443 3344555677777777777665
No 28
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=27.50 E-value=3.1e+02 Score=27.18 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLER----VRQIKSRLVAITGRVQKVRDELEHL 209 (431)
Q Consensus 142 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Ler----lr~lK~~L~~l~~rv~~vr~~l~~l 209 (431)
.|+| |+.++...++.+...-|.-....++.....-.+..+++ ...||++|..+...-+++.+.|+.-
T Consensus 161 ~a~~-af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~ 231 (373)
T 3hhm_B 161 TAIE-AFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQ 231 (373)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 66777777888877777666666666655545444444 4468888888877777776666643
No 29
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=27.41 E-value=99 Score=27.75 Aligned_cols=71 Identities=18% Similarity=0.373 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 014053 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVR-QIKSRLVAITGRVQKVRDELEHLLDDD 213 (431)
Q Consensus 142 ~aLE~~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr-~lK~~L~~l~~rv~~vr~~l~~lLddD 213 (431)
+=+...+......|...+..+...+.|..+++..++. ...+.+| +++..|..++.++.+.++.|..-+...
T Consensus 58 ~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~-~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~~ 129 (191)
T 1nfn_A 58 QELRALMDETMKELKAYKSELEEQLTPVAEETRARLS-KELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQS 129 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC----------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666655542 3455565 478888999999999999998887654
No 30
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.58 E-value=2.6e+02 Score=22.33 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 014053 180 LNLERVRQIKSRLVAITGRVQKVR 203 (431)
Q Consensus 180 ~~Lerlr~lK~~L~~l~~rv~~vr 203 (431)
.-..+||..|+.|..+++.++.++
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888777766544
No 31
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.76 E-value=63 Score=25.08 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 402 FLWTVGGGATGSIFLYVVAIAWCK 425 (431)
Q Consensus 402 F~~v~~~~~~~~v~i~~~~~~y~k 425 (431)
.++++++++++.+++.+++++.+|
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 32
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.36 E-value=3.2e+02 Score=27.00 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 149 EAACSCLENEAKTLEQEAHPALDKLTSKIST-LNLERVRQIKSRLVAITGRVQKVRDEL 206 (431)
Q Consensus 149 ~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~-~~Lerlr~lK~~L~~l~~rv~~vr~~l 206 (431)
..+...|+.+...++.....+...+..+..+ ....+++.+++.+...+.++..+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQ 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999888888766554 344567888888888887777655443
No 33
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.11 E-value=1.2e+02 Score=25.56 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hHHhhhhhHHHhhh
Q 014053 155 LENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE-DMAEMYLTEKLMQQ 228 (431)
Q Consensus 155 Le~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~-dm~~m~Lt~~~~~~ 228 (431)
+.+|+..|.+....+=..+..-..+.+-+-+-+++.....|+.++..++..=..-|..+. ++.+|.+++.....
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~lpFsR~iTK~ 82 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKK 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCSEEEECCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCccccccHH
Confidence 345556666555554444444455556667888999999999999999998888886655 77888877755444
No 34
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=23.04 E-value=2.3e+02 Score=20.96 Aligned_cols=31 Identities=16% Similarity=-0.037 Sum_probs=19.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014053 138 PFEFVALEACLEAACSCLENEAKTLEQEAHP 168 (431)
Q Consensus 138 PFEl~aLE~~L~~~~~~Le~e~~~Le~~~~~ 168 (431)
+=|+.-|-..+......|....+.....+..
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~ 66 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAG 66 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777776655544433333
No 35
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=22.59 E-value=2.5e+02 Score=22.12 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChh-hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
Q 014053 148 LEAACSCLENEAKTLEQEAHPALDKLTSKISTL-NLERVRQIKSRL----VAITGRVQKVRDELEHLLDD 212 (431)
Q Consensus 148 L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~vs~~-~Lerlr~lK~~L----~~l~~rv~~vr~~l~~lLdd 212 (431)
|+.+...|+.-.+.+...+..++++|..+.+.. -|-.+...=+.- +.-..-++.+++...-+|+.
T Consensus 12 Ld~v~~~f~~ga~~~~~~v~~Ai~~L~~~PsnPa~LAeyQ~kl~eysl~rNaqSttiKa~KDi~~sI~~~ 81 (85)
T 2ca5_A 12 LSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAILEH 81 (85)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888899999999999999999999877543 333222211221 12234556677777777764
No 36
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=22.56 E-value=4.1e+02 Score=28.61 Aligned_cols=10 Identities=20% Similarity=0.238 Sum_probs=4.2
Q ss_pred HHHHHHHcCc
Q 014053 420 AIAWCKHKRL 429 (431)
Q Consensus 420 ~~~y~krk~w 429 (431)
++.++++|+|
T Consensus 719 l~~~~~~~~~ 728 (741)
T 3aqp_A 719 LVVAWKNRRK 728 (741)
T ss_dssp HHHHHHHC--
T ss_pred HHHHhhhccc
Confidence 4445555554
No 37
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=21.53 E-value=1.1e+02 Score=25.49 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhh
Q 014053 147 CLEAACSCLENEAKTLEQEAHPALDKLTSKI-----STLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEM 219 (431)
Q Consensus 147 ~L~~~~~~Le~e~~~Le~~~~~~Ld~L~~~v-----s~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m 219 (431)
.|+.+..--..++..+|.......+.|.... +....++ .++.|.++|+||..++.+
T Consensus 21 ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~-----------------~~~lL~~IL~nDaeIr~L 81 (122)
T 3a7m_A 21 LLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDM-----------------VAGYIKQTLDNEQLLKGL 81 (122)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH-----------------HHHHHHHHHHhHHHHHHH
Confidence 3444444455677788888888888876432 2223322 345566677777776643
No 38
>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4
Probab=21.31 E-value=4.2e+02 Score=23.23 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014053 157 NEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDD 212 (431)
Q Consensus 157 ~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLdd 212 (431)
+++-..|..+..+|..+.+..+...|.. .+.+.+.+-++++..+.++++.+=.+
T Consensus 22 ~Diy~aE~q~~~aL~~~~~~a~~p~Lk~--~l~~H~~eT~~qi~rLe~i~~~lg~~ 75 (173)
T 2gyq_A 22 RDIYYAEQQITKALPKMIEQATNRDLSQ--GLTSHLEETQKQIERLDQVFKKLGQK 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3447789999999999999888876653 36777888889999999999886443
No 39
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.09 E-value=3.1e+02 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHH
Q 014053 183 ERVRQIKSRLVA-ITGRVQKV 202 (431)
Q Consensus 183 erlr~lK~~L~~-l~~rv~~v 202 (431)
.+||..|+.|.. +++.++++
T Consensus 72 ~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666 55555544
No 40
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.03 E-value=6.9e+02 Score=25.65 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 014053 325 VQIDGTLNKLSTLREYVDDTEDYINIMLD 353 (431)
Q Consensus 325 ~~id~i~~~l~~l~e~i~~ted~i~~~Ld 353 (431)
+++.-+.+.|+.++..|.-+|.-|.++++
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q~~ 160 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIKIR 160 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666667777777664
No 41
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=20.50 E-value=3.2e+02 Score=21.54 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhccCChhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCch
Q 014053 146 ACLEAACSCLENEAKTLEQEAHP-------ALDKLTSKISTLNLERVRQIKSR----LVAITGRVQKVRDELEHLLDDDE 214 (431)
Q Consensus 146 ~~L~~~~~~Le~e~~~Le~~~~~-------~Ld~L~~~vs~~~Lerlr~lK~~----L~~l~~rv~~vr~~l~~lLddD~ 214 (431)
..|..+...++.++..+...... ++-.| ++ -+.+..+|.+ +..++.++..+.+.|++.|.++.
T Consensus 26 e~l~~aA~~vd~~~~~i~~~~~~~~~~r~~vmaAL--nl----adel~~~~~~~~~~~~~~~~~i~~L~~~le~aL~~~~ 99 (104)
T 1t3u_A 26 ANLESAARYLDGKMREIRSSGKVIGADRVAVMAAL--NI----THDLLHRKERLDQESSSTRERVRELLDRVDRALANPA 99 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34666677777777766544210 11111 00 1234444443 77889999999999999987765
Q ss_pred h
Q 014053 215 D 215 (431)
Q Consensus 215 d 215 (431)
.
T Consensus 100 ~ 100 (104)
T 1t3u_A 100 D 100 (104)
T ss_dssp -
T ss_pred c
Confidence 4
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.34 E-value=7.5e+02 Score=25.83 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhH
Q 014053 316 LEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDD 354 (431)
Q Consensus 316 ~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~ 354 (431)
++.-+..-++++..+.+.|+.++..|.-+|--|.+++..
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334555555666666666677777777777653
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.34 E-value=3e+02 Score=27.56 Aligned_cols=19 Identities=5% Similarity=0.204 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014053 184 RVRQIKSRLVAITGRVQKV 202 (431)
Q Consensus 184 rlr~lK~~L~~l~~rv~~v 202 (431)
+|+.||..|..+..+++++
T Consensus 135 ~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 44
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.02 E-value=1.6e+02 Score=21.07 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014053 309 KHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTED 346 (431)
Q Consensus 309 ~~~d~~e~E~LLE~y~~~id~i~~~l~~l~e~i~~ted 346 (431)
..++.+||...|+.-...++.+......|++.+..+++
T Consensus 18 rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 18 RGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp TEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788999999988888888888888888888777654
Done!