Query 014055
Match_columns 431
No_of_seqs 284 out of 1148
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 01:25:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 97.8 2.2E-05 4.8E-10 49.2 3.6 21 86-106 1-21 (21)
2 KOG0160 Myosin class V heavy c 97.8 6.8E-05 1.5E-09 84.5 9.6 68 81-152 668-736 (862)
3 smart00015 IQ Short calmodulin 97.3 0.00022 4.7E-09 46.8 2.8 21 85-105 2-22 (26)
4 PF13178 DUF4005: Protein of u 97.1 0.00032 7E-09 60.4 2.9 18 365-382 34-51 (102)
5 KOG0160 Myosin class V heavy c 96.7 0.0069 1.5E-07 68.8 9.6 68 82-152 692-759 (862)
6 PTZ00014 myosin-A; Provisional 96.7 0.0037 8E-08 70.9 7.4 41 87-127 778-819 (821)
7 KOG0520 Uncharacterized conser 96.7 0.0011 2.4E-08 75.5 3.0 74 84-157 808-889 (975)
8 KOG0164 Myosin class I heavy c 95.6 0.059 1.3E-06 60.2 9.4 63 79-152 689-752 (1001)
9 COG5022 Myosin heavy chain [Cy 95.5 0.032 6.9E-07 66.0 7.6 49 78-126 737-786 (1463)
10 PF00612 IQ: IQ calmodulin-bin 95.1 0.033 7.3E-07 34.8 3.4 19 109-127 2-20 (21)
11 smart00015 IQ Short calmodulin 92.4 0.15 3.2E-06 33.3 2.8 20 108-127 3-22 (26)
12 PTZ00014 myosin-A; Provisional 92.4 0.34 7.5E-06 55.4 7.5 41 109-152 778-818 (821)
13 KOG2128 Ras GTPase-activating 90.7 0.8 1.7E-05 54.6 8.3 68 85-152 564-640 (1401)
14 KOG4427 E3 ubiquitin protein l 87.0 1 2.3E-05 51.0 5.6 34 72-105 16-49 (1096)
15 KOG0377 Protein serine/threoni 80.6 3 6.5E-05 45.1 5.6 34 84-117 15-48 (631)
16 KOG0520 Uncharacterized conser 77.3 3.3 7.2E-05 48.2 5.1 64 87-150 834-930 (975)
17 KOG0162 Myosin class I heavy c 75.5 5.1 0.00011 45.7 5.7 39 86-127 696-735 (1106)
18 KOG0164 Myosin class I heavy c 74.7 23 0.00049 40.7 10.3 80 107-195 695-774 (1001)
19 KOG0161 Myosin class II heavy 74.1 8.4 0.00018 48.2 7.5 38 110-147 775-812 (1930)
20 KOG0942 E3 ubiquitin protein l 73.8 3.2 6.9E-05 48.0 3.7 27 79-105 22-48 (1001)
21 KOG0161 Myosin class II heavy 71.8 27 0.00059 43.9 11.0 47 80-126 767-817 (1930)
22 KOG2128 Ras GTPase-activating 69.9 9 0.00019 46.2 6.3 64 90-154 539-612 (1401)
23 COG5022 Myosin heavy chain [Cy 61.0 85 0.0018 38.6 11.9 55 93-150 775-833 (1463)
24 KOG0163 Myosin class VI heavy 60.3 32 0.00069 39.8 7.9 34 85-118 812-846 (1259)
25 PF08763 Ca_chan_IQ: Voltage g 47.7 21 0.00046 25.8 2.7 20 86-105 9-28 (35)
26 KOG4427 E3 ubiquitin protein l 31.1 1.8E+02 0.004 34.0 8.0 26 106-131 28-53 (1096)
27 KOG0942 E3 ubiquitin protein l 30.8 83 0.0018 37.1 5.4 24 106-129 27-50 (1001)
28 KOG0165 Microtubule-associated 30.5 1.1E+02 0.0023 35.7 6.1 25 83-107 940-964 (1023)
29 PF15157 IQ-like: IQ-like 29.4 51 0.0011 28.5 2.7 20 86-105 47-66 (97)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.83 E-value=2.2e-05 Score=49.24 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014055 86 EWAAIRIQTAFRGLLARRAFR 106 (431)
Q Consensus 86 e~AAI~IQsafRgylARRa~r 106 (431)
+.|||+||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999884
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.82 E-value=6.8e-05 Score=84.46 Aligned_cols=68 Identities=31% Similarity=0.287 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 81 RLIRQEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 81 ~~~ree~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
.......+++.||+.||+|+.|+.| +.+++++.||+++||+++|+ .++ ...|++.||..+|++..|..
T Consensus 668 R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~~ 736 (862)
T KOG0160|consen 668 RSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRRR 736 (862)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHHH
Confidence 3445678889999999999999999 88999999999999999998 223 66667777777777766654
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.30 E-value=0.00022 Score=46.82 Aligned_cols=21 Identities=52% Similarity=0.730 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014055 85 QEWAAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 85 ee~AAI~IQsafRgylARRa~ 105 (431)
++.||++||+.||||++|+.|
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999988
No 4
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=97.13 E-value=0.00032 Score=60.40 Aligned_cols=18 Identities=50% Similarity=0.652 Sum_probs=17.1
Q ss_pred CCCCcchhhhHHHhhhhc
Q 014055 365 KPSYMNLTRSIKAKQKAS 382 (431)
Q Consensus 365 ~psYM~~T~SakAk~r~~ 382 (431)
.|+||+.|||+|||+|..
T Consensus 34 ~PsYMa~TeSakAK~Rsq 51 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQ 51 (102)
T ss_pred CCCccchhhhhhhhhhcc
Confidence 999999999999999984
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.70 E-value=0.0069 Score=68.76 Aligned_cols=68 Identities=28% Similarity=0.269 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 82 LIRQEWAAIRIQTAFRGLLARRAFRALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 82 ~~ree~AAI~IQsafRgylARRa~ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
..+...+++.||+.+||+++|+......+.+.+|..+|+++.|+++ .....+++.||+.+|+..+|..
T Consensus 692 f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 692 FLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 4567899999999999999998444567789999999999999999 6678899999999999999983
No 6
>PTZ00014 myosin-A; Provisional
Probab=96.68 E-value=0.0037 Score=70.90 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014055 87 WAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 87 ~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa 127 (431)
..++.||++||||++|+.| +.+.+++.||+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999 6688999999999999998753
No 7
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.66 E-value=0.0011 Score=75.48 Aligned_cols=74 Identities=31% Similarity=0.342 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHhhhchhhh
Q 014055 84 RQEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQAAVTL-------RCMQALVRVQAQVRARSVGMASEK 155 (431)
Q Consensus 84 ree~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa~~tL-------r~~qAavrIQa~vR~~rvR~~~e~ 155 (431)
.-..||..||..||||+.|+.| -.+.-+|+||+.+||+.+|++|.... ...-++-++|+.+|++..+...|.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 3467999999999999999999 77789999999999999999986221 236678889999999998887665
Q ss_pred HH
Q 014055 156 QA 157 (431)
Q Consensus 156 ~~ 157 (431)
+.
T Consensus 888 ~~ 889 (975)
T KOG0520|consen 888 QE 889 (975)
T ss_pred cc
Confidence 44
No 8
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=95.57 E-value=0.059 Score=60.23 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 79 DFRLIRQEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 79 ~~~~~ree~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
+....+.-.-++.||++||||++|.+| +++..++.|+ ++|.+-++- .+..||.++|+.+.+..
T Consensus 689 e~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~ks----------~v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 689 EQRAERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKLKS----------YVQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHhhhhccc
Confidence 334445567799999999999999999 5555555556 777554443 23467888888776543
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=95.52 E-value=0.032 Score=65.99 Aligned_cols=49 Identities=37% Similarity=0.543 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 014055 78 KDFRLIRQEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQ 126 (431)
Q Consensus 78 ~~~~~~ree~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrq 126 (431)
.+.....-...++.||++|||++.||+| ++.+.+..+|.+.+|..+++.
T Consensus 737 E~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~ 786 (1463)
T COG5022 737 EDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRL 786 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhh
Confidence 4445556788999999999999999999 777777777777777666653
No 10
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.07 E-value=0.033 Score=34.78 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014055 109 KAVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 109 kgiVrLQAlvRG~lvRrqa 127 (431)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5788899999999998876
No 11
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=92.39 E-value=0.15 Score=33.32 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014055 108 LKAVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 108 lkgiVrLQAlvRG~lvRrqa 127 (431)
.+.++.||+.+||+++|+++
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46788889999999888876
No 12
>PTZ00014 myosin-A; Provisional
Probab=92.37 E-value=0.34 Score=55.39 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 109 KAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 109 kgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
..++.||+.+||++.|+.+ ++..+++++||+.+|++..++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~---~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKV---RKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999998 5668899999999999988753
No 13
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=90.70 E-value=0.8 Score=54.56 Aligned_cols=68 Identities=28% Similarity=0.403 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHhhhch
Q 014055 85 QEWAAIRIQTAFRGLLA---RRAF--RALKAVVRLQAIFRGRQVRKQAAVT----LRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 85 ee~AAI~IQsafRgylA---RRa~--ralkgiVrLQAlvRG~lvRrqa~~t----Lr~~qAavrIQa~vR~~rvR~~ 152 (431)
+....+-||.++|||+. +..| ...+-+|.+|++.||+++|+.+... ..+|...+.||+.+|....|..
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~ 640 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD 640 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence 67788999999999994 2333 5678899999999999999987533 3579999999999999887754
No 14
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.97 E-value=1 Score=51.02 Aligned_cols=34 Identities=29% Similarity=0.262 Sum_probs=28.0
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 72 VVRALPKDFRLIRQEWAAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 72 ~~~~~~~~~~~~ree~AAI~IQsafRgylARRa~ 105 (431)
+.+......-..+.+.||+.||.++|||++|+.|
T Consensus 16 ~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 16 VSQEREERSYQRRREAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556678899999999999999999998
No 15
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=80.62 E-value=3 Score=45.06 Aligned_cols=34 Identities=32% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 84 RQEWAAIRIQTAFRGLLARRAFRALKAVVRLQAI 117 (431)
Q Consensus 84 ree~AAI~IQsafRgylARRa~ralkgiVrLQAl 117 (431)
+-..|||.||+.||+|.||..-+.+-...-+|++
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 4578999999999999999988766666667775
No 16
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=77.32 E-value=3.3 Score=48.22 Aligned_cols=64 Identities=33% Similarity=0.391 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------H-H---HHHHHHHHHHHHHHHHHH----------------------HHHHHH
Q 014055 87 WAAIRIQTAFRGLLARRAFRA-------L-K---AVVRLQAIFRGRQVRKQA----------------------AVTLRC 133 (431)
Q Consensus 87 ~AAI~IQsafRgylARRa~ra-------l-k---giVrLQAlvRG~lvRrqa----------------------~~tLr~ 133 (431)
.-+|+||+++|||-.|+.|+. + + ..-++|.-+||+..|..+ ....+.
T Consensus 834 ~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~ 913 (975)
T KOG0520|consen 834 QPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL 913 (975)
T ss_pred CccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888832 1 1 122457777777555421 123455
Q ss_pred HhHHHHHHHHHHHHhhh
Q 014055 134 MQALVRVQAQVRARSVG 150 (431)
Q Consensus 134 ~qAavrIQa~vR~~rvR 150 (431)
.+|+++||+.+|....+
T Consensus 914 ~~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 914 TRAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHHhcCHHHH
Confidence 78899999999888777
No 17
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=75.45 E-value=5.1 Score=45.70 Aligned_cols=39 Identities=31% Similarity=0.537 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014055 86 EWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 86 e~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa 127 (431)
.--|.+||++||.|++||.| +.+.-...| +-|.-.||.+
T Consensus 696 d~~A~~IQkAWRrfv~rrky~k~ree~t~l---l~gKKeRRr~ 735 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRKYEKMREEATKL---LLGKKERRRY 735 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHH
Confidence 56799999999999999999 555444433 3355555544
No 18
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=74.66 E-value=23 Score=40.70 Aligned_cols=80 Identities=19% Similarity=0.150 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhchhhhHHHHHHHHhhhccCCCCCccccCCccCCCCC
Q 014055 107 ALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMASEKQAMVHSLLDEHCSQVDPTTQAEKGWCAIPGT 186 (431)
Q Consensus 107 alkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~~e~~~~~q~~~~~~~~~~~~~~~~e~~W~ds~~s 186 (431)
...-++.||..+||.++|..+ .+...+++.|+ .+|.+.++..- +. +++.+..-+..-+.-+. ..|---+.-
T Consensus 695 l~~lvtllQK~~RG~~~R~ry---~rmka~~~ii~-wyR~~K~ks~v--~e-l~~~~rg~k~~r~ygk~--~~WP~pP~~ 765 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRY---RRMKASATIIR-WYRRYKLKSYV--QE-LQRRFRGAKQMRDYGKS--IRWPAPPLV 765 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHH--HH-HHHHHHhhhhccccCCC--CCCCCCchH
Confidence 345567889999999999988 33334444555 88877776541 22 44444433333344332 358777776
Q ss_pred HHHHHHHHh
Q 014055 187 VEEVRTKLQ 195 (431)
Q Consensus 187 ~eei~a~lq 195 (431)
..+.+..|+
T Consensus 766 Lr~~~~~L~ 774 (1001)
T KOG0164|consen 766 LREFEELLR 774 (1001)
T ss_pred HHHHHHHHH
Confidence 666666554
No 19
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.11 E-value=8.4 Score=48.19 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 014055 110 AVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRAR 147 (431)
Q Consensus 110 giVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~ 147 (431)
-|+.+||.|||+++|+.+......+.|+..||..+|.+
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555544444444444455555544444
No 20
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.76 E-value=3.2 Score=48.02 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 79 DFRLIRQEWAAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 79 ~~~~~ree~AAI~IQsafRgylARRa~ 105 (431)
.-+..+++.+|++||+.||||++|++.
T Consensus 22 Ree~rk~e~~av~vQs~~Rg~~~r~~~ 48 (1001)
T KOG0942|consen 22 REEERKQEKNAVKVQSFWRGFRVRHNQ 48 (1001)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 335567899999999999999999987
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=71.78 E-value=27 Score=43.95 Aligned_cols=47 Identities=28% Similarity=0.320 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 014055 80 FRLIRQEWAAIRIQTAFRGLLARRAF----RALKAVVRLQAIFRGRQVRKQ 126 (431)
Q Consensus 80 ~~~~ree~AAI~IQsafRgylARRa~----ralkgiVrLQAlvRG~lvRrq 126 (431)
........-.+.+|+.+|||++|+.| ..+.++..||.-+|-++..+.
T Consensus 767 ~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 767 MRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33445566788999999999999999 346789999999998866553
No 22
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=69.86 E-value=9 Score=46.22 Aligned_cols=64 Identities=27% Similarity=0.331 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHhhhchhh
Q 014055 90 IRIQTAFRGLLARRAFRAL--------KAVVRLQAIFRGRQV--RKQAAVTLRCMQALVRVQAQVRARSVGMASE 154 (431)
Q Consensus 90 I~IQsafRgylARRa~ral--------kgiVrLQAlvRG~lv--Rrqa~~tLr~~qAavrIQa~vR~~rvR~~~e 154 (431)
.+||+..|||..|-.++.. -.++.+|++|||+++ -+.. .......-++.+|+..|+...|....
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~-~~~~~~~evv~~qs~~R~~lsrk~~~ 612 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDV-YLDSAKKEVVKFQSLTRGALSRKKYS 612 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHH-HHHHhhHHHHHHHHHHHHHHHHhhHH
Confidence 4559999999999988543 346779999999995 1111 22345667899999999999987643
No 23
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=60.98 E-value=85 Score=38.63 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhhh
Q 014055 93 QTAFRGLLARRAF---RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQ-AQVRARSVG 150 (431)
Q Consensus 93 QsafRgylARRa~---ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQ-a~vR~~rvR 150 (431)
|...+|++.|+.+ --....++||.+++...-|+++ ......+..+| ...+...++
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~---~~~~~~i~~lq~~i~~~~~~~ 833 (1463)
T COG5022 775 QVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEY---RSYLACIIKLQKTIKREKKLR 833 (1463)
T ss_pred HHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 3333466666554 3345666777777777777665 33344445555 333333333
No 24
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=60.32 E-value=32 Score=39.84 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014055 85 QEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIF 118 (431)
Q Consensus 85 ee~AAI~IQsafRgylARRa~-ralkgiVrLQAlv 118 (431)
...+.+++|+..||||+|+++ ....++.++-++.
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 567889999999999999999 4455555554443
No 25
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=47.72 E-value=21 Score=25.76 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014055 86 EWAAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 86 e~AAI~IQsafRgylARRa~ 105 (431)
.-||..||-+||.|.+|+.-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999998864
No 26
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.08 E-value=1.8e+02 Score=33.99 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 106 RALKAVVRLQAIFRGRQVRKQAAVTL 131 (431)
Q Consensus 106 ralkgiVrLQAlvRG~lvRrqa~~tL 131 (431)
+.-.+.+.||+.+|||++|+.+...+
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~~~I 53 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQIEI 53 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999885333
No 27
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.76 E-value=83 Score=37.08 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 106 RALKAVVRLQAIFRGRQVRKQAAV 129 (431)
Q Consensus 106 ralkgiVrLQAlvRG~lvRrqa~~ 129 (431)
+..++.|.+|+++||+.+|++...
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHH
Confidence 667899999999999999997743
No 28
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=30.48 E-value=1.1e+02 Score=35.74 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 83 IRQEWAAIRIQTAFRGLLARRAFRA 107 (431)
Q Consensus 83 ~ree~AAI~IQsafRgylARRa~ra 107 (431)
+....||+.||.+.|||.+|+.|+.
T Consensus 940 enkKkaavviqkmirgfiarrkfqm 964 (1023)
T KOG0165|consen 940 ENKKKAAVVIQKMIRGFIARRKFQM 964 (1023)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999953
No 29
>PF15157 IQ-like: IQ-like
Probab=29.37 E-value=51 Score=28.47 Aligned_cols=20 Identities=35% Similarity=0.298 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014055 86 EWAAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 86 e~AAI~IQsafRgylARRa~ 105 (431)
+.-+.+||.+||-|++|...
T Consensus 47 eskvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 47 ESKVKIIQRAWREYLQRQDP 66 (97)
T ss_pred hHHHHHHHHHHHHHHHhcCC
Confidence 55678899999999998764
Done!