Query 014055
Match_columns 431
No_of_seqs 284 out of 1148
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:41:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.2 8E-11 2.7E-15 89.2 8.3 54 84-138 3-57 (58)
2 2dfs_A Myosin-5A; myosin-V, in 98.8 1.2E-08 4.1E-13 115.5 11.6 70 83-153 765-835 (1080)
3 2dfs_A Myosin-5A; myosin-V, in 98.8 9.1E-09 3.1E-13 116.5 10.6 72 81-153 811-883 (1080)
4 1n2d_C IQ2 and IQ3 motifs from 98.8 1.4E-08 4.7E-13 73.9 6.9 42 86-127 3-47 (48)
5 1n2d_C IQ2 and IQ3 motifs from 98.3 1.2E-06 4.1E-11 63.6 6.6 44 108-152 3-46 (48)
6 2ix7_C Myosin-5A; contractIle 97.8 4.6E-05 1.6E-09 57.3 6.6 44 107-153 4-47 (58)
7 2l53_B CAM, voltage-gated sodi 97.6 4.8E-05 1.7E-09 51.8 3.6 22 84-105 4-25 (31)
8 2kxw_B Sodium channel protein 97.5 4.3E-05 1.5E-09 50.5 2.7 21 84-104 4-24 (27)
9 1wdc_A Scallop myosin; calcium 97.5 0.00034 1.2E-08 53.7 7.3 42 85-126 5-50 (64)
10 2bl0_A Major plasmodial myosin 97.4 0.00032 1.1E-08 53.8 6.1 39 87-125 5-47 (63)
11 1wdc_A Scallop myosin; calcium 97.2 0.00086 2.9E-08 51.5 7.2 46 107-152 5-50 (64)
12 2bl0_A Major plasmodial myosin 97.2 0.00078 2.7E-08 51.6 6.8 45 108-152 4-48 (63)
13 1kk8_A Myosin heavy chain, str 97.1 0.00077 2.6E-08 74.8 7.9 46 82-127 775-824 (837)
14 1i84_S Smooth muscle myosin he 96.0 0.0085 2.9E-07 68.4 6.9 43 84-126 790-836 (1184)
15 3gn4_A Myosin-VI; unconvention 95.5 0.016 5.5E-07 52.2 5.6 34 85-118 44-78 (148)
16 1kk8_A Myosin heavy chain, str 95.2 0.038 1.3E-06 61.4 8.5 47 106-152 777-823 (837)
17 1i84_S Smooth muscle myosin he 93.4 0.14 4.8E-06 58.5 8.1 47 106-152 790-836 (1184)
18 4dck_A Sodium channel protein 91.1 0.19 6.3E-06 46.1 4.4 28 80-107 124-151 (168)
19 1w7j_A Myosin VA; motor protei 89.5 0.25 8.5E-06 54.7 4.5 26 83-108 765-790 (795)
20 4anj_A Unconventional myosin-V 88.9 0.41 1.4E-05 54.6 5.8 42 85-127 774-816 (1052)
21 3gn4_A Myosin-VI; unconvention 78.8 4.7 0.00016 36.2 6.9 21 109-129 46-66 (148)
22 2kxw_B Sodium channel protein 58.1 8.3 0.00028 25.2 2.8 20 133-152 5-24 (27)
23 2l53_B CAM, voltage-gated sodi 57.4 8.1 0.00028 26.1 2.8 20 133-152 5-24 (31)
24 4anj_A Unconventional myosin-V 54.5 13 0.00045 42.4 5.7 42 108-152 774-815 (1052)
25 1w7j_A Myosin VA; motor protei 41.6 28 0.00094 38.6 5.5 22 106-127 766-787 (795)
26 3dvk_B Voltage-dependent R-typ 37.8 14 0.00048 23.5 1.4 17 86-102 6-22 (23)
27 2f3y_B Voltage-dependent L-typ 37.7 21 0.00073 23.2 2.3 18 88-105 4-21 (26)
28 2be6_D Voltage-dependent L-typ 33.7 33 0.0011 24.0 2.9 20 86-105 11-30 (37)
29 2ycu_A Non muscle myosin 2C, a 33.1 16 0.00056 41.3 2.1 26 187-212 845-870 (995)
30 3bxl_B CAM, voltage-dependent 21.9 62 0.0021 21.1 2.4 18 87-104 3-20 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.17 E-value=8e-11 Score=89.21 Aligned_cols=54 Identities=35% Similarity=0.431 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014055 84 RQEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALV 138 (431)
Q Consensus 84 ree~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAav 138 (431)
+.+.|||+||+.||||++|+.| +...+++.||+++||+++|+.+ ..++..+|++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~~r~~~aA~ 57 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYA-KFLRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCcc
Confidence 4678999999999999999999 7778999999999999999998 6677776664
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.81 E-value=1.2e-08 Score=115.46 Aligned_cols=70 Identities=33% Similarity=0.381 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhchh
Q 014055 83 IRQEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMAS 153 (431)
Q Consensus 83 ~ree~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~~ 153 (431)
.+...||++||++||||++|+.| +.+.+++.||+++||+++|+++ ..++...|+++||+.||++.+|+..
T Consensus 765 ~~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk~y 835 (1080)
T 2dfs_A 765 DKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRKRY 835 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHHHH
Confidence 34478999999999999999999 7788999999999999999988 6788899999999999999998763
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.81 E-value=9.1e-09 Score=116.48 Aligned_cols=72 Identities=26% Similarity=0.307 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhchh
Q 014055 81 RLIRQEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMAS 153 (431)
Q Consensus 81 ~~~ree~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~~ 153 (431)
..+++..||++||++||||++|+.| +.+.+++.||+++||+++|+++ ..++...+++.||+.||++.+|...
T Consensus 811 ~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~-~~lr~~~aav~IQ~~~Rg~l~R~~y 883 (1080)
T 2dfs_A 811 TFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY-QMMLREHKSIIIQKHVRGWLARVHY 883 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTTHHHHHT
T ss_pred cccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999 7778899999999999999888 5566677888888888888877653
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.4e-08 Score=73.93 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHH
Q 014055 86 EWAAIRIQTAFRGLLARRAF-RALK--AVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 86 e~AAI~IQsafRgylARRa~-ralk--giVrLQAlvRG~lvRrqa 127 (431)
..|||.||+.||||++|+.| ..++ +++.||+++||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 36899999999999999999 3333 889999999999998865
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.2e-06 Score=63.56 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 108 LKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 108 lkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
+.+++.||+.+||+++|+++ ..++...|++.||+.+||+.+|..
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHh
Confidence 57899999999999999998 667788899999999999998863
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.80 E-value=4.6e-05 Score=57.30 Aligned_cols=44 Identities=30% Similarity=0.323 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhchh
Q 014055 107 ALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMAS 153 (431)
Q Consensus 107 alkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~~ 153 (431)
...+++.||+.+||+++|+.+ +....+++.||+.+||+.+|...
T Consensus 4 ~~~aai~IQ~~~Rg~~~Rk~~---~~~r~aai~IQ~~~Rg~~aR~~~ 47 (58)
T 2ix7_C 4 LRAACIRIQKTIRGWLLRKRY---LCMQRAAITVQRYVRGYQARCYA 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999998 55567999999999999999763
No 7
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.59 E-value=4.8e-05 Score=51.78 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014055 84 RQEWAAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 84 ree~AAI~IQsafRgylARRa~ 105 (431)
+|+.||++||.+||+|+.|+.+
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999875
No 8
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.54 E-value=4.3e-05 Score=50.51 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014055 84 RQEWAAIRIQTAFRGLLARRA 104 (431)
Q Consensus 84 ree~AAI~IQsafRgylARRa 104 (431)
+|+.||++||.+||+|+.++.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999998864
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.46 E-value=0.00034 Score=53.73 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHH
Q 014055 85 QEWAAIRIQTAFRGLLARRAF-RA---LKAVVRLQAIFRGRQVRKQ 126 (431)
Q Consensus 85 ee~AAI~IQsafRgylARRa~-ra---lkgiVrLQAlvRG~lvRrq 126 (431)
....++.||+++|||++|+.| +. ..++..||..+|+++.++.
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345677778888888877777 22 4556667777777776653
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.36 E-value=0.00032 Score=53.82 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHH
Q 014055 87 WAAIRIQTAFRGLLARRAF-RA---LKAVVRLQAIFRGRQVRK 125 (431)
Q Consensus 87 ~AAI~IQsafRgylARRa~-ra---lkgiVrLQAlvRG~lvRr 125 (431)
..++.||+++|||++|+.| +. ..++..||..+|+++.++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666666 22 344455565555555544
No 11
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.23 E-value=0.00086 Score=51.46 Aligned_cols=46 Identities=24% Similarity=0.138 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 107 ALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 107 alkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
...-++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 5 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 5 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456889999999999999997777778888899999999988754
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.22 E-value=0.00078 Score=51.63 Aligned_cols=45 Identities=22% Similarity=0.023 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 108 LKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 108 lkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
..-++.||+.+||+++|+.+...+....|+..||..+|++..++.
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 356789999999999999997777778888899999999988764
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.09 E-value=0.00077 Score=74.82 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Q 014055 82 LIRQEWAAIRIQTAFRGLLARRAF-RA---LKAVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 82 ~~ree~AAI~IQsafRgylARRa~-ra---lkgiVrLQAlvRG~lvRrqa 127 (431)
..+...+|+.||++||||++|+.| +. +.+++.||..+||+++|+..
T Consensus 775 ~~~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 775 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 345567899999999999999999 33 47889999999999998865
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.95 E-value=0.0085 Score=68.44 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHH
Q 014055 84 RQEWAAIRIQTAFRGLLARRAF-RA---LKAVVRLQAIFRGRQVRKQ 126 (431)
Q Consensus 84 ree~AAI~IQsafRgylARRa~-ra---lkgiVrLQAlvRG~lvRrq 126 (431)
+...+|+.||++||||++|+.| +. ..+++.||+.+||++.++.
T Consensus 790 ~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 790 KITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4457899999999999999999 32 4689999999999999875
No 15
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.55 E-value=0.016 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014055 85 QEWAAIRIQTAFRGLLARRAFRA-LKAVVRLQAIF 118 (431)
Q Consensus 85 ee~AAI~IQsafRgylARRa~ra-lkgiVrLQAlv 118 (431)
...|+|+||+++||||+|+.++- ..|++++.+|.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57889999999999999999944 47887777765
No 16
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=95.23 E-value=0.038 Score=61.42 Aligned_cols=47 Identities=26% Similarity=0.168 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 106 RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 106 ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
+....++.||+.+||+++|+++...+....|++.||+.+|++..++.
T Consensus 777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~ 823 (837)
T 1kk8_A 777 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44567889999999999999995544557899999999999998764
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.41 E-value=0.14 Score=58.53 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 106 RALKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 106 ralkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
+....++.||+.+||+++|+.+...+....|++.||+.||++..++.
T Consensus 790 ~l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 790 KITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44467889999999999999996555567899999999999988754
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=91.14 E-value=0.19 Score=46.07 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 80 FRLIRQEWAAIRIQTAFRGLLARRAFRA 107 (431)
Q Consensus 80 ~~~~ree~AAI~IQsafRgylARRa~ra 107 (431)
....+++.||++||.+||.|+.|+.++.
T Consensus 124 ~~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 124 LRRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4456899999999999999999888743
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=89.49 E-value=0.25 Score=54.72 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014055 83 IRQEWAAIRIQTAFRGLLARRAFRAL 108 (431)
Q Consensus 83 ~ree~AAI~IQsafRgylARRa~ral 108 (431)
.+...+|++||++||||++|+.|+.+
T Consensus 765 ~~l~~~~~~iQ~~~Rg~l~R~~~~~~ 790 (795)
T 1w7j_A 765 DKLRAACIRIQKTIRGWLMRKKYMRM 790 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999433
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=88.93 E-value=0.41 Score=54.58 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014055 85 QEWAAIRIQTAFRGLLARRAF-RALKAVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 85 ee~AAI~IQsafRgylARRa~-ralkgiVrLQAlvRG~lvRrqa 127 (431)
...+|+.||. +|||++|++| +.+.+++.+|.+.|+...|+..
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888885 7999999999 7788889999988887766543
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=78.81 E-value=4.7 Score=36.18 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014055 109 KAVVRLQAIFRGRQVRKQAAV 129 (431)
Q Consensus 109 kgiVrLQAlvRG~lvRrqa~~ 129 (431)
..++.||+.||||++|+++..
T Consensus 46 ~~~i~iQktvR~~L~rkkhkP 66 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHKP 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 678899999999999998843
No 22
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=58.11 E-value=8.3 Score=25.23 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHhhhch
Q 014055 133 CMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 133 ~~qAavrIQa~vR~~rvR~~ 152 (431)
...|++.||..||+++.+..
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45688889999998887753
No 23
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=57.38 E-value=8.1 Score=26.12 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=15.7
Q ss_pred HHhHHHHHHHHHHHHhhhch
Q 014055 133 CMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 133 ~~qAavrIQa~vR~~rvR~~ 152 (431)
...+++.||..||+++.+..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45688889999998888754
No 24
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=54.54 E-value=13 Score=42.42 Aligned_cols=42 Identities=5% Similarity=-0.127 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhch
Q 014055 108 LKAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQAQVRARSVGMA 152 (431)
Q Consensus 108 lkgiVrLQAlvRG~lvRrqa~~tLr~~qAavrIQa~vR~~rvR~~ 152 (431)
+..++.+|..+||+++|+++ .+..++++.||...|.++.|..
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~---~k~~~~a~~i~~~~r~~~~r~~ 815 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRW---KKVQWCSLSVIKLKNKIKYRAE 815 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565678999999998 4556788888888888776654
No 25
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=41.57 E-value=28 Score=38.60 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014055 106 RALKAVVRLQAIFRGRQVRKQA 127 (431)
Q Consensus 106 ralkgiVrLQAlvRG~lvRrqa 127 (431)
+..+.++.||+.+||+++|+++
T Consensus 766 ~l~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 766 KLRAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888888888877
No 26
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=37.78 E-value=14 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014055 86 EWAAIRIQTAFRGLLAR 102 (431)
Q Consensus 86 e~AAI~IQsafRgylAR 102 (431)
.-|+..||-.||.+..|
T Consensus 6 iYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 46899999999998765
No 27
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=37.70 E-value=21 Score=23.18 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014055 88 AAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 88 AAI~IQsafRgylARRa~ 105 (431)
|...||-+||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 567899999999988764
No 28
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=33.67 E-value=33 Score=24.05 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014055 86 EWAAIRIQTAFRGLLARRAF 105 (431)
Q Consensus 86 e~AAI~IQsafRgylARRa~ 105 (431)
--|.-.||-+||.|..|+.-
T Consensus 11 fYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 11 FYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999988864
No 29
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=33.13 E-value=16 Score=41.28 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhHh
Q 014055 187 VEEVRTKLQLRQEGAIKRERAIAYYL 212 (431)
Q Consensus 187 ~eei~a~lq~r~Eaa~KRERAlAYAf 212 (431)
+++|...+..-..+...|+.+|.=++
T Consensus 845 ~~~L~~~W~~L~~ae~er~~~L~~el 870 (995)
T 2ycu_A 845 PNEIDSTWSALEKAEQEHAEALRIEL 870 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566666555555566666654443
No 30
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=21.89 E-value=62 Score=21.06 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014055 87 WAAIRIQTAFRGLLARRA 104 (431)
Q Consensus 87 ~AAI~IQsafRgylARRa 104 (431)
-||..||-.||-+..||.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 489999999999988775
Done!