Query 014057
Match_columns 431
No_of_seqs 238 out of 796
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 01:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02825 LAP/PHD finger-like p 99.7 5.1E-17 1.1E-21 148.7 8.1 62 260-325 2-63 (162)
2 KOG1609 Protein involved in mR 99.6 5.3E-17 1.2E-21 156.1 1.9 160 256-415 68-233 (323)
3 PHA02862 5L protein; Provision 99.6 5.7E-17 1.2E-21 146.6 1.6 57 266-326 2-58 (156)
4 smart00744 RINGv The RING-vari 99.6 4E-16 8.6E-21 117.4 3.3 49 268-317 1-49 (49)
5 PF12906 RINGv: RING-variant d 99.5 2.1E-15 4.6E-20 112.5 1.8 47 269-316 1-47 (47)
6 COG5183 SSM4 Protein involved 99.5 3.3E-14 7.2E-19 154.1 6.0 62 265-327 11-72 (1175)
7 KOG3053 Uncharacterized conser 99.2 2.5E-12 5.5E-17 125.6 2.6 64 261-324 15-85 (293)
8 KOG4628 Predicted E3 ubiquitin 98.0 3.3E-06 7.1E-11 86.4 3.4 51 267-323 230-280 (348)
9 PF13639 zf-RING_2: Ring finge 98.0 2.5E-06 5.4E-11 61.7 1.6 44 267-317 1-44 (44)
10 PLN03208 E3 ubiquitin-protein 97.2 0.00041 8.8E-09 66.3 4.2 50 265-322 17-80 (193)
11 COG5540 RING-finger-containing 97.1 0.00037 8.1E-09 70.7 3.4 51 264-320 321-371 (374)
12 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00053 1.1E-08 55.4 3.0 45 266-317 19-73 (73)
13 PHA02929 N1R/p28-like protein; 97.0 0.00072 1.6E-08 66.4 4.5 52 265-323 173-229 (238)
14 PF11793 FANCL_C: FANCL C-term 96.9 0.00033 7.1E-09 56.4 1.0 53 266-321 2-66 (70)
15 COG5243 HRD1 HRD ubiquitin lig 96.9 0.00077 1.7E-08 70.0 3.6 52 263-321 284-345 (491)
16 PF13920 zf-C3HC4_3: Zinc fing 96.9 0.00076 1.7E-08 50.1 2.6 48 265-322 1-49 (50)
17 PF12861 zf-Apc11: Anaphase-pr 96.8 0.0015 3.3E-08 55.2 4.0 53 266-322 21-83 (85)
18 cd00162 RING RING-finger (Real 96.7 0.0016 3.4E-08 44.8 3.2 44 268-319 1-44 (45)
19 COG5219 Uncharacterized conser 96.4 0.00095 2E-08 75.6 0.7 55 265-322 1468-1524(1525)
20 KOG0802 E3 ubiquitin ligase [P 96.3 0.002 4.3E-08 69.1 2.4 50 263-319 288-339 (543)
21 smart00184 RING Ring finger. E 96.2 0.0048 1E-07 40.8 2.8 39 269-316 1-39 (39)
22 KOG1493 Anaphase-promoting com 95.9 0.003 6.5E-08 52.9 1.0 52 268-323 22-83 (84)
23 KOG0823 Predicted E3 ubiquitin 95.8 0.015 3.3E-07 57.0 5.3 58 262-327 43-104 (230)
24 PHA02926 zinc finger-like prot 95.5 0.012 2.7E-07 57.7 3.7 55 264-323 168-232 (242)
25 PF00097 zf-C3HC4: Zinc finger 95.4 0.013 2.9E-07 41.3 2.6 41 269-316 1-41 (41)
26 smart00504 Ubox Modified RING 94.8 0.034 7.4E-07 42.1 3.6 45 267-321 2-46 (63)
27 PF13923 zf-C3HC4_2: Zinc fing 94.3 0.032 7E-07 39.5 2.1 38 269-316 1-39 (39)
28 KOG0827 Predicted E3 ubiquitin 94.2 0.026 5.7E-07 59.2 2.3 46 266-317 4-52 (465)
29 KOG0828 Predicted E3 ubiquitin 94.2 0.027 5.9E-07 60.6 2.2 57 258-320 563-633 (636)
30 PF14634 zf-RING_5: zinc-RING 92.9 0.091 2E-06 38.3 2.6 44 268-318 1-44 (44)
31 KOG4265 Predicted E3 ubiquitin 92.5 0.15 3.4E-06 52.8 4.6 53 262-323 286-338 (349)
32 PF14570 zf-RING_4: RING/Ubox 92.4 0.11 2.3E-06 39.9 2.4 46 269-321 1-48 (48)
33 TIGR00599 rad18 DNA repair pro 92.4 0.085 1.8E-06 55.5 2.6 48 265-322 25-72 (397)
34 KOG0317 Predicted E3 ubiquitin 92.0 0.16 3.4E-06 51.6 3.8 57 259-325 232-288 (293)
35 KOG1645 RING-finger-containing 88.2 0.21 4.5E-06 52.9 1.1 64 265-332 3-70 (463)
36 KOG0804 Cytoplasmic Zn-finger 88.1 0.27 5.9E-06 52.6 1.9 49 264-321 173-222 (493)
37 KOG1734 Predicted RING-contain 87.0 0.18 3.9E-06 51.1 -0.2 54 265-323 223-283 (328)
38 PF05883 Baculo_RING: Baculovi 83.7 0.55 1.2E-05 43.0 1.3 42 265-306 25-67 (134)
39 KOG0320 Predicted E3 ubiquitin 83.2 1.8 4E-05 41.5 4.6 60 253-320 118-177 (187)
40 KOG4445 Uncharacterized conser 81.9 0.48 1E-05 48.7 0.3 53 265-322 114-187 (368)
41 KOG0825 PHD Zn-finger protein 81.5 0.36 7.8E-06 54.8 -0.9 54 265-325 122-175 (1134)
42 PF15227 zf-C3HC4_4: zinc fing 80.5 1.2 2.5E-05 32.6 1.8 40 269-316 1-42 (42)
43 KOG1952 Transcription factor N 80.3 1.1 2.3E-05 51.4 2.3 61 262-326 187-252 (950)
44 PF04564 U-box: U-box domain; 79.7 1.1 2.3E-05 36.1 1.5 49 265-322 3-51 (73)
45 KOG1785 Tyrosine kinase negati 78.9 0.88 1.9E-05 48.5 1.0 49 267-323 370-418 (563)
46 KOG2930 SCF ubiquitin ligase, 78.5 1.3 2.8E-05 39.4 1.8 28 294-323 83-110 (114)
47 PLN02189 cellulose synthase 77.4 1.7 3.6E-05 50.9 2.8 53 265-322 33-88 (1040)
48 KOG0801 Predicted E3 ubiquitin 76.7 1.1 2.3E-05 42.8 0.8 25 265-289 176-200 (205)
49 PF13445 zf-RING_UBOX: RING-ty 76.4 2.1 4.5E-05 31.9 2.1 40 269-314 1-43 (43)
50 COG5194 APC11 Component of SCF 76.1 2.9 6.3E-05 35.7 3.1 28 294-323 56-83 (88)
51 COG5175 MOT2 Transcriptional r 74.6 2.3 5.1E-05 44.6 2.7 53 263-322 11-65 (480)
52 TIGR00570 cdk7 CDK-activating 74.1 3.2 6.9E-05 42.7 3.5 52 266-323 3-56 (309)
53 KOG2177 Predicted E3 ubiquitin 73.6 1.6 3.4E-05 39.7 1.1 46 263-318 10-55 (386)
54 PLN02638 cellulose synthase A 73.1 2.8 6.1E-05 49.3 3.1 52 265-323 16-72 (1079)
55 COG5034 TNG2 Chromatin remodel 70.8 1.7 3.6E-05 43.8 0.6 30 288-319 241-270 (271)
56 PLN02915 cellulose synthase A 69.4 4.8 0.0001 47.3 3.9 52 265-322 14-69 (1044)
57 PLN02195 cellulose synthase A 68.4 4.6 0.0001 47.1 3.5 51 265-321 5-59 (977)
58 PLN02400 cellulose synthase 66.8 3.5 7.6E-05 48.5 2.2 53 265-323 35-91 (1085)
59 PLN02436 cellulose synthase A 66.4 4.3 9.4E-05 47.8 2.8 54 265-323 35-91 (1094)
60 KOG0825 PHD Zn-finger protein 66.2 2.5 5.3E-05 48.5 0.8 57 257-317 206-264 (1134)
61 KOG0956 PHD finger protein AF1 66.0 5.1 0.00011 45.4 3.1 119 194-324 53-185 (900)
62 KOG2164 Predicted E3 ubiquitin 65.8 52 0.0011 36.3 10.5 49 266-322 186-237 (513)
63 PF10367 Vps39_2: Vacuolar sor 65.8 2.4 5.3E-05 34.9 0.5 32 265-302 77-108 (109)
64 PF07800 DUF1644: Protein of u 65.6 8.2 0.00018 36.5 4.0 39 265-308 1-49 (162)
65 KOG1428 Inhibitor of type V ad 65.3 4.9 0.00011 49.1 2.9 55 264-323 3484-3546(3738)
66 COG5236 Uncharacterized conser 65.0 11 0.00023 40.1 5.0 59 260-326 55-113 (493)
67 PRK05978 hypothetical protein; 62.1 14 0.0003 34.5 4.7 20 303-324 47-66 (148)
68 PF10272 Tmpp129: Putative tra 61.2 8.9 0.00019 40.3 3.7 36 285-323 307-353 (358)
69 PF08746 zf-RING-like: RING-li 59.8 5 0.00011 29.7 1.2 22 295-316 22-43 (43)
70 KOG0802 E3 ubiquitin ligase [P 59.0 5.4 0.00012 43.3 1.8 53 256-322 469-521 (543)
71 KOG2927 Membrane component of 58.6 9.2 0.0002 40.3 3.3 42 354-397 193-234 (372)
72 KOG1039 Predicted E3 ubiquitin 58.2 6.6 0.00014 41.0 2.2 56 264-323 159-223 (344)
73 PF14569 zf-UDP: Zinc-binding 57.3 13 0.00029 31.5 3.4 56 265-324 8-65 (80)
74 PF13937 DUF4212: Domain of un 56.3 24 0.00052 29.8 4.8 67 349-416 5-74 (81)
75 COG5432 RAD18 RING-finger-cont 52.0 6.8 0.00015 40.6 1.1 49 265-323 24-72 (391)
76 KOG1941 Acetylcholine receptor 50.9 5 0.00011 42.9 -0.1 51 264-319 363-414 (518)
77 KOG4323 Polycomb-like PHD Zn-f 50.9 6.5 0.00014 42.6 0.8 55 267-324 169-229 (464)
78 PF15013 CCSMST1: CCSMST1 fami 48.0 19 0.00042 30.3 3.0 23 348-370 28-51 (77)
79 KOG0287 Postreplication repair 46.7 8.6 0.00019 40.6 0.9 47 266-322 23-69 (442)
80 TIGR03647 Na_symport_sm probab 46.5 49 0.0011 27.7 5.1 66 350-416 2-70 (77)
81 COG5574 PEX10 RING-finger-cont 43.6 22 0.00048 36.2 3.1 57 260-325 209-266 (271)
82 PF05290 Baculo_IE-1: Baculovi 40.3 17 0.00038 33.6 1.7 56 265-323 79-134 (140)
83 KOG4692 Predicted E3 ubiquitin 38.8 23 0.00049 37.8 2.5 54 259-322 414-468 (489)
84 PF04641 Rtf2: Rtf2 RING-finge 38.7 34 0.00074 33.8 3.6 53 263-323 110-163 (260)
85 PRK10692 hypothetical protein; 37.1 91 0.002 27.2 5.4 28 386-413 38-78 (92)
86 TIGR00927 2A1904 K+-dependent 35.7 43 0.00094 39.7 4.3 31 348-378 930-960 (1096)
87 KOG3970 Predicted E3 ubiquitin 35.6 29 0.00063 35.0 2.6 50 266-321 50-105 (299)
88 PRK02935 hypothetical protein; 35.3 34 0.00075 30.6 2.7 25 383-411 37-61 (110)
89 PF01440 Gemini_AL2: Geminivir 35.2 6.2 0.00013 36.3 -2.0 34 281-317 31-64 (134)
90 KOG4172 Predicted E3 ubiquitin 33.1 17 0.00037 29.3 0.4 49 267-323 8-56 (62)
91 KOG1973 Chromatin remodeling p 32.9 17 0.00036 36.5 0.4 36 285-320 233-269 (274)
92 PF10762 DUF2583: Protein of u 32.4 1.1E+02 0.0023 26.6 5.0 27 386-412 38-77 (89)
93 COG4291 Predicted membrane pro 32.3 1.4E+02 0.003 29.8 6.5 69 356-430 94-176 (228)
94 PF05656 DUF805: Protein of un 29.8 96 0.0021 26.3 4.5 26 384-409 46-71 (120)
95 PF04341 DUF485: Protein of un 29.5 1.9E+02 0.0041 24.3 6.2 48 357-405 21-71 (91)
96 PF12606 RELT: Tumour necrosis 28.5 54 0.0012 25.5 2.5 29 383-411 4-32 (50)
97 KOG3817 Uncharacterized conser 28.1 64 0.0014 34.6 3.7 71 348-423 130-214 (452)
98 PF05781 MRVI1: MRVI1 protein; 27.9 58 0.0013 36.2 3.5 38 380-417 478-532 (538)
99 KOG1002 Nucleotide excision re 27.7 27 0.00058 39.0 0.9 50 264-321 534-586 (791)
100 KOG3899 Uncharacterized conser 27.7 35 0.00075 35.6 1.7 35 287-324 323-368 (381)
101 PF06170 DUF983: Protein of un 26.9 59 0.0013 27.6 2.7 15 310-324 8-22 (86)
102 KOG4159 Predicted E3 ubiquitin 26.1 25 0.00055 37.4 0.4 52 263-324 81-132 (398)
103 COG5152 Uncharacterized conser 25.1 42 0.00091 33.3 1.6 52 256-320 189-240 (259)
104 PF11712 Vma12: Endoplasmic re 24.8 1.7E+02 0.0036 26.4 5.4 41 358-402 85-125 (142)
105 KOG0955 PHD finger protein BR1 24.6 30 0.00064 41.2 0.6 54 264-321 217-271 (1051)
106 PF11395 DUF2873: Protein of u 24.3 62 0.0013 24.2 2.0 11 359-369 21-31 (43)
107 PF11023 DUF2614: Protein of u 23.9 67 0.0015 29.0 2.6 33 384-416 37-69 (114)
108 COG4327 Predicted membrane pro 23.9 52 0.0011 29.0 1.8 64 349-415 12-79 (101)
109 KOG4443 Putative transcription 23.2 43 0.00094 38.0 1.5 31 285-317 36-75 (694)
110 KOG0956 PHD finger protein AF1 23.1 44 0.00095 38.4 1.5 57 267-324 6-76 (900)
111 PF13894 zf-C2H2_4: C2H2-type 23.1 35 0.00077 20.3 0.5 12 312-323 2-13 (24)
112 PF02529 PetG: Cytochrome B6-F 23.1 1.1E+02 0.0024 22.7 3.0 21 385-405 4-24 (37)
113 PF14446 Prok-RING_1: Prokaryo 22.7 96 0.0021 24.6 2.9 34 265-302 4-37 (54)
114 PF12273 RCR: Chitin synthesis 22.6 76 0.0016 28.1 2.7 16 351-366 2-17 (130)
115 KOG3059 N-acetylglucosaminyltr 21.6 94 0.002 32.1 3.4 57 364-421 151-207 (292)
116 PRK03072 heat shock protein Ht 20.9 1.3E+02 0.0029 30.2 4.3 48 357-408 12-59 (288)
117 PF08693 SKG6: Transmembrane a 20.4 64 0.0014 24.2 1.4 22 348-369 13-34 (40)
No 1
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.69 E-value=5.1e-17 Score=148.68 Aligned_cols=62 Identities=29% Similarity=0.647 Sum_probs=53.8
Q ss_pred CCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeeccc
Q 014057 260 EDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPV 325 (431)
Q Consensus 260 Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~pv 325 (431)
||..+.++.||||+++.. .+..||.|+|+++|||++||++|+..+++..||+|+++|.....
T Consensus 2 ~~~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~ 63 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKN 63 (162)
T ss_pred CCcCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEe
Confidence 455567899999997742 34689999999999999999999999999999999999988743
No 2
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.63 E-value=5.3e-17 Score=156.07 Aligned_cols=160 Identities=29% Similarity=0.340 Sum_probs=105.2
Q ss_pred CCCCCCCCCCCCcceeeccccCCC-CCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeeccceeeeccccc
Q 014057 256 DDGGEDIPEEEAVCRICFIELGEG-FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTLLRLQNVQ 334 (431)
Q Consensus 256 ~~~~Edi~Eee~vCRICl~e~~e~-~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~pv~~lri~~~~ 334 (431)
++..++.+.++..||||+.+..+. +..++.||.|+|++++||+.|+++|+..+++..||+|++.|.+..+...+.....
T Consensus 68 ~~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~ 147 (323)
T KOG1609|consen 68 EESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVIS 147 (323)
T ss_pred CCccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehh
Confidence 345555566689999999876532 1278999999999999999999999999999999999999999877664444322
Q ss_pred cCCCCCCc--cc-c-cccceeechhHHHHHHHHHHHHHHHHHhhcccCccceeeeh-hHHHHHHHHHHHHHHHHHhhhch
Q 014057 335 ASSLPDSG--AQ-V-TRYRVWQDVPILVIVSMLAYFCFLEELLVGKMKSGAIAISL-PFSCILGLLASTTATTMASHAGC 409 (431)
Q Consensus 335 ~~n~g~~~--~~-~-~~~r~W~~~pvLViiSmL~yF~FLeqLLv~~~gt~aiaisl-Pfs~vlGll~s~~~~~mv~~~Y~ 409 (431)
....+... .. . .....|....+.+.+..+.++++.+..+...++.....+.. +..+.+|++.....+.+..+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (323)
T KOG1609|consen 148 KVRSGALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYI 227 (323)
T ss_pred hhhhHhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHH
Confidence 11111100 00 0 01112222222222333556777777777777664444444 45567888888888888888888
Q ss_pred hhcchh
Q 014057 410 HSCSAV 415 (431)
Q Consensus 410 ~iy~~~ 415 (431)
|++...
T Consensus 228 ~~~~~~ 233 (323)
T KOG1609|consen 228 FILKSL 233 (323)
T ss_pred HHHHHH
Confidence 766554
No 3
>PHA02862 5L protein; Provisional
Probab=99.63 E-value=5.7e-17 Score=146.58 Aligned_cols=57 Identities=26% Similarity=0.580 Sum_probs=50.5
Q ss_pred CCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeeccce
Q 014057 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVT 326 (431)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~pv~ 326 (431)
.+.||||+++.++ + ..||.|+|+++|||++||++|++.+++..||+|+++|...+.+
T Consensus 2 ~diCWIC~~~~~e-~---~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~y 58 (156)
T PHA02862 2 SDICWICNDVCDE-R---NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKTY 58 (156)
T ss_pred CCEEEEecCcCCC-C---cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEcc
Confidence 4789999987532 1 5999999999999999999999999999999999999987654
No 4
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.60 E-value=4e-16 Score=117.38 Aligned_cols=49 Identities=49% Similarity=1.072 Sum_probs=44.8
Q ss_pred cceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCccccccc
Q 014057 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317 (431)
Q Consensus 268 vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk 317 (431)
+||||+++. ++++++++||.|+|+++|||++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 599999833 4578899999999999999999999999999999999996
No 5
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.53 E-value=2.1e-15 Score=112.54 Aligned_cols=47 Identities=40% Similarity=1.032 Sum_probs=38.0
Q ss_pred ceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccc
Q 014057 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (431)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEIC 316 (431)
||||+++..+ +++|+.||.|+|+++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~-~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE-DEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS-SS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCC-CCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 8999988764 4489999999999999999999999999999999998
No 6
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.47 E-value=3.3e-14 Score=154.10 Aligned_cols=62 Identities=32% Similarity=0.734 Sum_probs=57.4
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeecccee
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTL 327 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~pv~~ 327 (431)
+...||||+.|.. .++++.+||+|+|+++|+|++||..|+..++++.||||+++|++..+|.
T Consensus 11 d~~~CRICr~e~~-~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~ 72 (1175)
T COG5183 11 DKRSCRICRTEDI-RDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYK 72 (1175)
T ss_pred cchhceeecCCCC-CCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecc
Confidence 3489999998875 4789999999999999999999999999999999999999999998876
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=2.5e-12 Score=125.61 Aligned_cols=64 Identities=28% Similarity=0.585 Sum_probs=53.1
Q ss_pred CCCCCCCcceeeccccCCCCC-ceecccCCCCcccccCHHHHHHHHHhcC------Ccccccccceeeecc
Q 014057 261 DIPEEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKG------NKTCEVCKQEVENLP 324 (431)
Q Consensus 261 di~Eee~vCRICl~e~~e~~~-~Li~PC~CkGsLk~VH~~CL~kW~~~sg------s~~CEICk~~y~n~p 324 (431)
+..|.|..||||+..+++... .++.||.|+|+.||||++||.+|+.+|. ...|+.|+++|..+-
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 334568999999987754433 4899999999999999999999998874 379999999999773
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.3e-06 Score=86.39 Aligned_cols=51 Identities=24% Similarity=0.608 Sum_probs=43.9
Q ss_pred CcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
..|.||+++..+++...++||+ +.+|..|++.||... .+.|++||+....-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCCC
Confidence 7999999999887777889999 578999999999886 56799999976543
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.00 E-value=2.5e-06 Score=61.75 Aligned_cols=44 Identities=34% Similarity=0.932 Sum_probs=35.1
Q ss_pred CcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCccccccc
Q 014057 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317 (431)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk 317 (431)
+.|-||+++..+++....++|. +.+|.+|+.+|++.+ ..|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 4699999888665667778875 699999999999884 5999996
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.15 E-value=0.00041 Score=66.28 Aligned_cols=50 Identities=28% Similarity=0.623 Sum_probs=39.8
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhc--------------CCcccccccceeee
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------------GNKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~s--------------gs~~CEICk~~y~n 322 (431)
++..|.||++.. .++.+.+|. +.++..|+.+|+..+ +...|++|+..+..
T Consensus 17 ~~~~CpICld~~---~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQV---RDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcC---CCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 568999999765 357788887 588999999998642 34689999999864
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00037 Score=70.70 Aligned_cols=51 Identities=22% Similarity=0.532 Sum_probs=41.0
Q ss_pred CCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCccccccccee
Q 014057 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEV 320 (431)
Q Consensus 264 Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y 320 (431)
..+-.|.||++..-..+...++||+ +-+|..|+.+|+.-. +..|++|+++.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y-~~~CPvCrt~i 371 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY-SNKCPVCRTAI 371 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh-cccCCccCCCC
Confidence 3558999999877655667789998 478999999999731 56799999874
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.02 E-value=0.00053 Score=55.42 Aligned_cols=45 Identities=29% Similarity=0.674 Sum_probs=30.9
Q ss_pred CCcceeeccccCCC---------CCc-eecccCCCCcccccCHHHHHHHHHhcCCccccccc
Q 014057 266 EAVCRICFIELGEG---------FDA-LKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317 (431)
Q Consensus 266 e~vCRICl~e~~e~---------~~~-Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk 317 (431)
++.|-||+....+. +-. ...+|+ +.+|..||.+|++. +.+|++|+
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTT--SSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhc--CCcCCCCC
Confidence 34599999877321 122 234665 68999999999976 45999996
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.01 E-value=0.00072 Score=66.36 Aligned_cols=52 Identities=21% Similarity=0.485 Sum_probs=38.7
Q ss_pred CCCcceeeccccCCCCC-----ceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 265 EEAVCRICFIELGEGFD-----ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~-----~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
.+..|.||++...+... ....+|. +.+|..|+.+|+.. +.+|++|+..+..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEE
Confidence 35799999987543210 1334565 68999999999975 56899999998876
No 14
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.91 E-value=0.00033 Score=56.40 Aligned_cols=53 Identities=23% Similarity=0.530 Sum_probs=24.6
Q ss_pred CCcceeeccccCCCCCceeccc---CCCCcccccCHHHHHHHHHhcCC---------cccccccceee
Q 014057 266 EAVCRICFIELGEGFDALKMEC---GCKGELAFAHRECAVKWFSIKGN---------KTCEVCKQEVE 321 (431)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC---~CkGsLk~VH~~CL~kW~~~sgs---------~~CEICk~~y~ 321 (431)
+..|.||+....++++....-| .|+ +.+|..||.+||....+ -.|+.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 5689999976543333333444 575 57999999999975321 36999999865
No 15
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00077 Score=70.03 Aligned_cols=52 Identities=25% Similarity=0.680 Sum_probs=40.7
Q ss_pred CCCCCcceeeccccCCCC----------CceecccCCCCcccccCHHHHHHHHHhcCCcccccccceee
Q 014057 263 PEEEAVCRICFIELGEGF----------DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (431)
Q Consensus 263 ~Eee~vCRICl~e~~e~~----------~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~ 321 (431)
..++..|-||++|....+ .+-.+||. +..|-.||+.|+.. ..+|+||+..+.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ER--qQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLER--QQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHh--ccCCCcccCccc
Confidence 445689999998854322 34678998 58999999999976 678999999843
No 16
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.87 E-value=0.00076 Score=50.09 Aligned_cols=48 Identities=33% Similarity=0.788 Sum_probs=37.5
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccc-cCHHHHHHHHHhcCCcccccccceeee
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~-VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
|+..|.||++.. .+.+..||+. . +...|+.+|++ ....|++|+..+..
T Consensus 1 ~~~~C~iC~~~~---~~~~~~pCgH-----~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENP---RDVVLLPCGH-----LCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSB---SSEEEETTCE-----EEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred CcCCCccCCccC---CceEEeCCCC-----hHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 357899999764 4588899984 5 89999999998 68899999998764
No 17
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.78 E-value=0.0015 Score=55.23 Aligned_cols=53 Identities=28% Similarity=0.602 Sum_probs=38.0
Q ss_pred CCcceeeccccCC--------C-CCceecccCCCCcccccCHHHHHHHHHhc-CCcccccccceeee
Q 014057 266 EAVCRICFIELGE--------G-FDALKMECGCKGELAFAHRECAVKWFSIK-GNKTCEVCKQEVEN 322 (431)
Q Consensus 266 e~vCRICl~e~~e--------~-~~~Li~PC~CkGsLk~VH~~CL~kW~~~s-gs~~CEICk~~y~n 322 (431)
++.|-||+...+. + +-+++ -+.|. +.+|..|+.+|+... .+..|++|++++++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5678888766541 1 11232 24565 689999999999874 46899999999875
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.74 E-value=0.0016 Score=44.82 Aligned_cols=44 Identities=32% Similarity=0.810 Sum_probs=32.9
Q ss_pred cceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccce
Q 014057 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (431)
Q Consensus 268 vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~ 319 (431)
.|.||++... ......+|. +.+|..|+..|+.. ++..|++|+..
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh--CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4889987652 233445576 46899999999986 67789999975
No 19
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.43 E-value=0.00095 Score=75.62 Aligned_cols=55 Identities=29% Similarity=0.702 Sum_probs=39.0
Q ss_pred CCCcceeeccccCCCCCce-ecccC-CCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 265 EEAVCRICFIELGEGFDAL-KMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~L-i~PC~-CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
+...|.||+.-..--+..+ -.-|. || .-+|-.||-|||+.+++.+|++|+.++.+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 3467999985443111111 12343 76 47899999999999999999999988654
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.002 Score=69.14 Aligned_cols=50 Identities=30% Similarity=0.811 Sum_probs=41.4
Q ss_pred CCCCCcceeeccccCCCCC--ceecccCCCCcccccCHHHHHHHHHhcCCcccccccce
Q 014057 263 PEEEAVCRICFIELGEGFD--ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (431)
Q Consensus 263 ~Eee~vCRICl~e~~e~~~--~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~ 319 (431)
.+....|.||+++...+.+ +-++||. +.+|..||++||.. ..+|++|+..
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~ 339 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTV 339 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhh
Confidence 3457899999988865433 6689998 68999999999988 7889999993
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.18 E-value=0.0048 Score=40.85 Aligned_cols=39 Identities=44% Similarity=1.030 Sum_probs=30.7
Q ss_pred ceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccc
Q 014057 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (431)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEIC 316 (431)
|.||++.. .+....+|.. .+|..|+..|+. .+...|++|
T Consensus 1 C~iC~~~~---~~~~~~~C~H-----~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGH-----TFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCC-----hHHHHHHHHHHH-hCcCCCCCC
Confidence 77898662 4577888874 689999999998 466779887
No 22
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.003 Score=52.87 Aligned_cols=52 Identities=23% Similarity=0.505 Sum_probs=39.7
Q ss_pred cceeeccccCC---------CCCceecccCCCCcccccCHHHHHHHHHhcCC-cccccccceeeec
Q 014057 268 VCRICFIELGE---------GFDALKMECGCKGELAFAHRECAVKWFSIKGN-KTCEVCKQEVENL 323 (431)
Q Consensus 268 vCRICl~e~~e---------~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs-~~CEICk~~y~n~ 323 (431)
.|-||++.... ++=+|+.. .|+ +.+|..|+.+|+..+.+ -.|+.|++++++.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 89999877642 12355555 553 68999999999988775 6999999998864
No 23
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.015 Score=57.02 Aligned_cols=58 Identities=29% Similarity=0.532 Sum_probs=45.9
Q ss_pred CCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCC-cccccccceeee---cccee
Q 014057 262 IPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGN-KTCEVCKQEVEN---LPVTL 327 (431)
Q Consensus 262 i~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs-~~CEICk~~y~n---~pv~~ 327 (431)
.+.....|-||++.. .++++..|. +++==-||-||+..+.+ +.|++||.++.. +|+|.
T Consensus 43 ~~~~~FdCNICLd~a---kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA---KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCCceeeeeecccc---CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 445679999999764 468999998 46777999999998865 677999999874 45553
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=95.53 E-value=0.012 Score=57.74 Aligned_cols=55 Identities=20% Similarity=0.506 Sum_probs=39.6
Q ss_pred CCCCcceeeccccCCC----C--CceecccCCCCcccccCHHHHHHHHHhc----CCcccccccceeeec
Q 014057 264 EEEAVCRICFIELGEG----F--DALKMECGCKGELAFAHRECAVKWFSIK----GNKTCEVCKQEVENL 323 (431)
Q Consensus 264 Eee~vCRICl~e~~e~----~--~~Li~PC~CkGsLk~VH~~CL~kW~~~s----gs~~CEICk~~y~n~ 323 (431)
..+..|-||++..-+. + -.+..+|. +.+...|+.+|.+.+ ....|++|+..+.++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 3569999999753211 1 12345666 578999999999864 246799999999976
No 25
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.39 E-value=0.013 Score=41.28 Aligned_cols=41 Identities=29% Similarity=0.852 Sum_probs=33.1
Q ss_pred ceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccc
Q 014057 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (431)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEIC 316 (431)
|.||++...+ .....+|. +.++..|+.+|++..+...|++|
T Consensus 1 C~iC~~~~~~--~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED--PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS--EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC--CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 7899877542 22478998 57999999999998888899988
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.84 E-value=0.034 Score=42.13 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=36.5
Q ss_pred CcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceee
Q 014057 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (431)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~ 321 (431)
..|.||..-.. +++..||+ +.+-++|+.+|++. +..|++|+..+.
T Consensus 2 ~~Cpi~~~~~~---~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK---DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC---CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 57999987653 47888875 67899999999987 568999998763
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=94.25 E-value=0.032 Score=39.47 Aligned_cols=38 Identities=39% Similarity=0.855 Sum_probs=29.2
Q ss_pred ceeeccccCCCCCc-eecccCCCCcccccCHHHHHHHHHhcCCcccccc
Q 014057 269 CRICFIELGEGFDA-LKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (431)
Q Consensus 269 CRICl~e~~e~~~~-Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEIC 316 (431)
|.||++... ++ ...+|. +.+.++|+.+|++. +..|++|
T Consensus 1 C~iC~~~~~---~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR---DPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S---SEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc---CcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 779987653 36 578888 57899999999988 4789988
No 28
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.026 Score=59.19 Aligned_cols=46 Identities=28% Similarity=0.706 Sum_probs=33.0
Q ss_pred CCcceeeccccCCCCCce--ecccCCCCcccccCHHHHHHHHHhcCC-ccccccc
Q 014057 266 EAVCRICFIELGEGFDAL--KMECGCKGELAFAHRECAVKWFSIKGN-KTCEVCK 317 (431)
Q Consensus 266 e~vCRICl~e~~e~~~~L--i~PC~CkGsLk~VH~~CL~kW~~~sgs-~~CEICk 317 (431)
.+.|.||- ...+.+..+ +.-|. +.+|..||.+||..-.+ +.|+||+
T Consensus 4 ~A~C~Ic~-d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICI-DGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEec-cCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 47899993 333222222 34455 58999999999998776 7999999
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.027 Score=60.62 Aligned_cols=57 Identities=23% Similarity=0.567 Sum_probs=39.6
Q ss_pred CCCCCCCCCCcceeeccccC---CC-----------CCceecccCCCCcccccCHHHHHHHHHhcCCccccccccee
Q 014057 258 GGEDIPEEEAVCRICFIELG---EG-----------FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEV 320 (431)
Q Consensus 258 ~~Edi~Eee~vCRICl~e~~---e~-----------~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y 320 (431)
.+|.-.+....|-||...-. ++ .+-+..||. +..|..||++|+.. .+-.|++|+...
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~-ykl~CPvCR~pL 633 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDT-YKLICPVCRCPL 633 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhh-hcccCCccCCCC
Confidence 44444556789999986542 00 123456888 58999999999973 136899999873
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=92.93 E-value=0.091 Score=38.27 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=35.7
Q ss_pred cceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccc
Q 014057 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 318 (431)
Q Consensus 268 vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~ 318 (431)
.|-||+....+....++++|. +.+...|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 378999887444567889997 589999999999 66789999984
No 31
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.15 Score=52.77 Aligned_cols=53 Identities=26% Similarity=0.510 Sum_probs=38.5
Q ss_pred CCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 262 IPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 262 i~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
..+++..|-||+.+. .+.+++||+-- ..=..|++.-.-. .+.|+||++.+.-+
T Consensus 286 ~~~~gkeCVIClse~---rdt~vLPCRHL----CLCs~Ca~~Lr~q--~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 286 ESESGKECVICLSES---RDTVVLPCRHL----CLCSGCAKSLRYQ--TNNCPICRQPIEEL 338 (349)
T ss_pred cccCCCeeEEEecCC---cceEEecchhh----ehhHhHHHHHHHh--hcCCCccccchHhh
Confidence 446789999999774 56889997731 2345798887633 46799999987644
No 32
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.40 E-value=0.11 Score=39.93 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=23.6
Q ss_pred ceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcC--Ccccccccceee
Q 014057 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKG--NKTCEVCKQEVE 321 (431)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sg--s~~CEICk~~y~ 321 (431)
|.+|.++..+ .+.-+.||.|. ++-|+.=|..... +..|+-|+..|.
T Consensus 1 cp~C~e~~d~-~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDE-TDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--C-CCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccccc-CCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 6778777643 34456999996 7888888988774 789999999884
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.38 E-value=0.085 Score=55.50 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=38.7
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
....|.||+.... ++.+.||. +.+...|+..|+... ..|++|+..+..
T Consensus 25 ~~l~C~IC~d~~~---~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFD---VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhh---CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 4689999987653 46678988 578899999999764 489999998764
No 34
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.16 Score=51.59 Aligned_cols=57 Identities=25% Similarity=0.607 Sum_probs=44.5
Q ss_pred CCCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeeccc
Q 014057 259 GEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPV 325 (431)
Q Consensus 259 ~Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~pv 325 (431)
.-++++....|-+|++.. .++--.||. +.+=-.|+..|...+. .|++|+..++.-.+
T Consensus 232 ~~~i~~a~~kC~LCLe~~---~~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENR---SNPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPSKV 288 (293)
T ss_pred CccCCCCCCceEEEecCC---CCCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCcce
Confidence 345677889999999775 356679998 4667799999998854 49999999875543
No 35
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.24 E-value=0.21 Score=52.95 Aligned_cols=64 Identities=22% Similarity=0.463 Sum_probs=46.2
Q ss_pred CCCcceeeccccCCCCCc-eecccCCCCcccccCHHHHHHHHHhcCCcccccccceeee---ccceeeeccc
Q 014057 265 EEAVCRICFIELGEGFDA-LKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN---LPVTLLRLQN 332 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~-Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n---~pv~~lri~~ 332 (431)
.+..|-||+++..-.++- ++.+ .|. +.+-.+|+++|+..+....|++|+.+... .+.|.+|++.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl-~cg---hlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSL-QCG---HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccccCceeeeeeeecCceEEeee-ccc---ccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 467899999888654543 3333 443 58899999999976667899999988764 3556566554
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.12 E-value=0.27 Score=52.58 Aligned_cols=49 Identities=24% Similarity=0.678 Sum_probs=36.1
Q ss_pred CCCCcceeeccccCCC-CCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceee
Q 014057 264 EEEAVCRICFIELGEG-FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (431)
Q Consensus 264 Eee~vCRICl~e~~e~-~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~ 321 (431)
.|-+.|.+|++-+.++ +..+-..|. +-+|-.|+++|- ...|++|++.-.
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~----~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWW----DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcc----cCcChhhhhhcC
Confidence 4679999999776543 234555666 478999999996 457899888765
No 37
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=0.18 Score=51.10 Aligned_cols=54 Identities=24% Similarity=0.603 Sum_probs=40.5
Q ss_pred CCCcceeeccccCC----C---CCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 265 EEAVCRICFIELGE----G---FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 265 ee~vCRICl~e~~e----~---~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
+..+|.+|-..... + ++.-.+-|+ +-+|+-|++-|...-.+.+|+-||.++...
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 35789999543321 1 245567777 589999999999998899999999986543
No 38
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=83.69 E-value=0.55 Score=43.01 Aligned_cols=42 Identities=19% Similarity=0.422 Sum_probs=29.7
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcc-cccCHHHHHHHHH
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGEL-AFAHRECAVKWFS 306 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsL-k~VH~~CL~kW~~ 306 (431)
-...|+||++.-.+.+..+..+|...=.| +.+|.+|+++|-+
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 36889999988765345666776644333 3499999999953
No 39
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.23 E-value=1.8 Score=41.54 Aligned_cols=60 Identities=18% Similarity=0.423 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCccccccccee
Q 014057 253 DKKDDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEV 320 (431)
Q Consensus 253 ~~~~~~~Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y 320 (431)
....|..|..+++-.-|-||++...+ ..++-.-|+ +.+=.+|++.-++. ...|++|+.++
T Consensus 118 ~~~k~v~~~~~~~~~~CPiCl~~~se-k~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 118 RRDKDVDPLRKEGTYKCPICLDSVSE-KVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred cccccccccccccccCCCceecchhh-ccccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 34556666667777999999987643 223335565 57778999998865 78999999753
No 40
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=81.88 E-value=0.48 Score=48.73 Aligned_cols=53 Identities=17% Similarity=0.521 Sum_probs=39.1
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhc------------------C---Ccccccccceeee
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK------------------G---NKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~s------------------g---s~~CEICk~~y~n 322 (431)
....|-||+-+..+.....+.+|. +|.|..||.+.+..- . ...|+||......
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 347899998887765556678887 699999997766431 1 3689999988654
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.45 E-value=0.36 Score=54.81 Aligned_cols=54 Identities=20% Similarity=0.436 Sum_probs=38.6
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeeccc
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPV 325 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~pv 325 (431)
....|-+|+...-++...-..+|.| |+|..|+..|-+. ..+|++|+.+|..+-|
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H-----~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAH-----YFCEECVGSWSRC--AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccc-----ccHHHHhhhhhhh--cccCchhhhhhheeee
Confidence 4466777765543221222456776 9999999999876 6789999999987754
No 42
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=80.51 E-value=1.2 Score=32.60 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=27.8
Q ss_pred ceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCC--cccccc
Q 014057 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGN--KTCEVC 316 (431)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs--~~CEIC 316 (431)
|-||++-. .+++.++|. +-+=+.||.+|.+.... ..|++|
T Consensus 1 CpiC~~~~---~~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh---CCccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 77898665 468889998 36678999999987655 489887
No 43
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=80.34 E-value=1.1 Score=51.40 Aligned_cols=61 Identities=21% Similarity=0.473 Sum_probs=46.6
Q ss_pred CCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhc-----CCcccccccceeeeccce
Q 014057 262 IPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK-----GNKTCEVCKQEVENLPVT 326 (431)
Q Consensus 262 i~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~s-----gs~~CEICk~~y~n~pv~ 326 (431)
+.....+|-||.+........+ +|+.=.+.+|..|+.+|-+.+ ..+.|+-|++.+..+|..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~ 252 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKT 252 (950)
T ss_pred HhcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcc
Confidence 3445689999998765444455 566667889999999998664 248999999999988763
No 44
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=79.75 E-value=1.1 Score=36.07 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=34.7
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
++..|-||..-+ .++.+.||+ +.+=+.|+++|+.. +..+|++|+..+..
T Consensus 3 ~~f~CpIt~~lM---~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELM---RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB----SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHh---hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 357899987655 358888866 47889999999987 67889999887554
No 45
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=78.90 E-value=0.88 Score=48.48 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=40.1
Q ss_pred CcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
..|.||-+.+ .+.-+.||. ++.-..||-.|-...+...|+.|+.+....
T Consensus 370 eLCKICaend---KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccC---CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 6799997653 456789998 466779999999888889999999998754
No 46
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.47 E-value=1.3 Score=39.35 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=24.3
Q ss_pred cccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 294 AFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 294 k~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
+.+|.-|+.+|++. +..|++|..+..+.
T Consensus 83 HaFH~hCisrWlkt--r~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 83 HAFHFHCISRWLKT--RNVCPLDNKEWVFQ 110 (114)
T ss_pred hHHHHHHHHHHHhh--cCcCCCcCcceeEe
Confidence 57899999999987 78899999987654
No 47
>PLN02189 cellulose synthase
Probab=77.42 E-value=1.7 Score=50.90 Aligned_cols=53 Identities=28% Similarity=0.624 Sum_probs=37.4
Q ss_pred CCCcceeeccccC--CCCCceecccC-CCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 265 EEAVCRICFIELG--EGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li~PC~-CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
.+.+|+||-++.+ ..|+++ -.|+ |. --|=+.|. ..=...|+..|+.||++|.-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~f-vaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLF-VACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchhh
Confidence 4569999987654 345554 5666 52 12667898 44555689999999999993
No 48
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.73 E-value=1.1 Score=42.84 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=20.8
Q ss_pred CCCcceeeccccCCCCCceecccCC
Q 014057 265 EEAVCRICFIELGEGFDALKMECGC 289 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~C 289 (431)
...+|-||+++...++.+-.+||.|
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEE
Confidence 4578999999987666677899999
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=76.40 E-value=2.1 Score=31.85 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=21.4
Q ss_pred ceeeccccCC-CCCceecccCCCCcccccCHHHHHHHHHhc--CCcccc
Q 014057 269 CRICFIELGE-GFDALKMECGCKGELAFAHRECAVKWFSIK--GNKTCE 314 (431)
Q Consensus 269 CRICl~e~~e-~~~~Li~PC~CkGsLk~VH~~CL~kW~~~s--gs~~CE 314 (431)
|-||.+ ..+ +..+.+++|. +-+=++||++|.+.+ +...|+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 678877 433 2346889987 477899999999875 345564
No 50
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=76.07 E-value=2.9 Score=35.68 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.6
Q ss_pred cccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 294 AFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 294 k~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
+.+|-.|+.+|+.. ...|++|+++++..
T Consensus 56 HaFH~HCI~rWL~T--k~~CPld~q~w~~~ 83 (88)
T COG5194 56 HAFHDHCIYRWLDT--KGVCPLDRQTWVLA 83 (88)
T ss_pred hHHHHHHHHHHHhh--CCCCCCCCceeEEe
Confidence 57999999999988 66899999998764
No 51
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=74.64 E-value=2.3 Score=44.61 Aligned_cols=53 Identities=23% Similarity=0.599 Sum_probs=38.0
Q ss_pred CCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcC--Ccccccccceeee
Q 014057 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKG--NKTCEVCKQEVEN 322 (431)
Q Consensus 263 ~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sg--s~~CEICk~~y~n 322 (431)
++|++.|-.|.++..- .+.-+.||.|. -+-|---|-.++. +-+|+-|+..|.-
T Consensus 11 edeed~cplcie~mdi-tdknf~pc~cg------y~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 11 EDEEDYCPLCIEPMDI-TDKNFFPCPCG------YQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccccCccccccccc-ccCCcccCCcc------cHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3467889999877753 33446899994 2566666866654 5799999998874
No 52
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.09 E-value=3.2 Score=42.74 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=36.5
Q ss_pred CCcceeeccccC--CCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 266 EAVCRICFIELG--EGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 266 e~vCRICl~e~~--e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
+..|-+|....- ..-..++.+|. |-+=..|+.+.|.. +...|++|+..+..-
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence 468999987532 22234667776 35567999997743 667999999887643
No 53
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.57 E-value=1.6 Score=39.66 Aligned_cols=46 Identities=30% Similarity=0.705 Sum_probs=36.9
Q ss_pred CCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccc
Q 014057 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 318 (431)
Q Consensus 263 ~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~ 318 (431)
.+++..|.||++...+ +.++||. +.+=+.|+..|+. ....|+.|+.
T Consensus 10 ~~~~~~C~iC~~~~~~---p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFRE---PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhc---Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 4467999999988754 3778888 3566799999998 6789999994
No 54
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=73.13 E-value=2.8 Score=49.31 Aligned_cols=52 Identities=27% Similarity=0.558 Sum_probs=35.6
Q ss_pred CCCcceeeccccC--CCCCcee--cccCCCCcccc-cCHHHHHHHHHhcCCcccccccceeeec
Q 014057 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CkGsLk~-VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
.+.+|+||-++.+ .+|++++ ..|. | |=+.|.+ .=..-|+..|+.||++|.-.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~------FPVCrpCYE-YEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA------FPVCRPCYE-YERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC------Cccccchhh-hhhhcCCccCCccCCchhhh
Confidence 4579999976543 4466664 3342 2 5558973 33445899999999999944
No 55
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=70.84 E-value=1.7 Score=43.82 Aligned_cols=30 Identities=33% Similarity=0.555 Sum_probs=20.6
Q ss_pred CCCCcccccCHHHHHHHHHhcCCcccccccce
Q 014057 288 GCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (431)
Q Consensus 288 ~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~ 319 (431)
+|+- -|+|..|+--==--+|+++|+-|+..
T Consensus 241 nCkr--EWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCKR--EWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCch--hheeccccccCCCCCCcEeCHHhHhc
Confidence 5764 48999995322223578999999864
No 56
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=69.42 E-value=4.8 Score=47.34 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=35.4
Q ss_pred CCCcceeeccccC--CCCCcee--cccCCCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
...+|.||-++.+ .+|++++ ..|. --|-+.|. ..=..-|+..|+.||++|..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cy-eye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCY-EYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchh-hhhhhcCCccCCccCCchhh
Confidence 5689999976543 3466664 3342 11555898 34445589999999999994
No 57
>PLN02195 cellulose synthase A
Probab=68.40 E-value=4.6 Score=47.13 Aligned_cols=51 Identities=24% Similarity=0.484 Sum_probs=34.4
Q ss_pred CCCcceeeccccC--CCCCcee--cccCCCCcccccCHHHHHHHHHhcCCcccccccceee
Q 014057 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (431)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~ 321 (431)
...+|+||-++.+ ..|++++ ..|. --|=+.|. ..=+.-|+..|+.||++|.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCy-eyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACL-EYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC-----Cccccchh-hhhhhcCCccCCccCCccc
Confidence 4579999976543 3456664 3342 12556887 3444558999999999998
No 58
>PLN02400 cellulose synthase
Probab=66.84 E-value=3.5 Score=48.55 Aligned_cols=53 Identities=26% Similarity=0.520 Sum_probs=35.1
Q ss_pred CCCcceeeccccC--CCCCcee--cccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
.+.+|+||-++.+ ++|++++ +.|. --|=+.|.+ .=..-|+..|+.||++|.-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYE-YERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYE-YERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhh-eecccCCccCcccCCccccc
Confidence 4579999976543 4566664 3442 114558863 23344899999999999944
No 59
>PLN02436 cellulose synthase A
Probab=66.35 E-value=4.3 Score=47.81 Aligned_cols=54 Identities=24% Similarity=0.577 Sum_probs=37.2
Q ss_pred CCCcceeeccccC--CCCCceecccC-CCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 265 EEAVCRICFIELG--EGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li~PC~-CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
...+|.||-++.+ .+|+++ --|+ |. --|=+.|. ..-...|+..|+.||++|.-.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~F-VACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPF-VACNECA---FPVCRPCY-EYERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred CCccccccccccCcCCCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchhhc
Confidence 4579999976643 345555 4555 42 12667898 445566899999999999943
No 60
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=66.18 E-value=2.5 Score=48.46 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHh--cCCccccccc
Q 014057 257 DGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI--KGNKTCEVCK 317 (431)
Q Consensus 257 ~~~Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~--sgs~~CEICk 317 (431)
|.-++..++..-|-||...+- ++.|++-=.|. .+|+|-.||..=+.. -+.++|.-|-
T Consensus 206 d~~~~~~~E~~~C~IC~~~Dp--EdVLLLCDsCN--~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 206 DQISGLSQEEVKCDICTVHDP--EDVLLLCDSCN--KVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred ccccCcccccccceeeccCCh--HHhheeecccc--cceeeccccCcccccccccceecCcch
Confidence 334444567788999976643 34443322354 368999999885532 3568899995
No 61
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=65.97 E-value=5.1 Score=45.40 Aligned_cols=119 Identities=24% Similarity=0.302 Sum_probs=68.7
Q ss_pred CCCCCCcceeccccCccCCCCCcccccccCCeeEEee--CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCcc
Q 014057 194 AKGAPLPIHRSRSVPLLNKDGSIRQMDSLGGVFRVIP--TTPRVAEGSGTTSSNTFPSNTTDKKDDGGEDIPE--EEAVC 269 (431)
Q Consensus 194 ~~~~~~~i~RS~SvP~~~~~~s~rr~ds~~g~~riip--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Edi~E--ee~vC 269 (431)
|=+.+..+.|-+-----.|++-+||+|. +|.--||= --|++.=++.. .. |.--..++|. ....|
T Consensus 53 KCesqeraarvrCeLCP~kdGALKkTDn-~GWAHVVCALYIPEVrFgNV~--TM---------EPIiLq~VP~dRfnKtC 120 (900)
T KOG0956|consen 53 KCESQERAARVRCELCPHKDGALKKTDN-GGWAHVVCALYIPEVRFGNVH--TM---------EPIILQDVPHDRFNKTC 120 (900)
T ss_pred hhhhhhhhccceeecccCcccceecccC-CCceEEEEEeeccceeecccc--cc---------cceeeccCchhhhccee
Confidence 3345555556443333378899999999 55665552 23344444432 11 1111233443 34899
Q ss_pred eeeccccCCCC--CceecccCCCCcccccCHHHHHHH--H-Hhc-----CCcccccccceeeecc
Q 014057 270 RICFIELGEGF--DALKMECGCKGELAFAHRECAVKW--F-SIK-----GNKTCEVCKQEVENLP 324 (431)
Q Consensus 270 RICl~e~~e~~--~~Li~PC~CkGsLk~VH~~CL~kW--~-~~s-----gs~~CEICk~~y~n~p 324 (431)
-||.++.-+.. .---|-|+=.|=-+.+|-.|++.- | .+- ..++|--|+|.|..+.
T Consensus 121 YIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 121 YICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred eeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 99986643321 112466764444478999999865 1 111 2389999999998774
No 62
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.78 E-value=52 Score=36.26 Aligned_cols=49 Identities=18% Similarity=0.638 Sum_probs=36.5
Q ss_pred CCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhc---CCcccccccceeee
Q 014057 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK---GNKTCEVCKQEVEN 322 (431)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~s---gs~~CEICk~~y~n 322 (431)
+..|-||+.+.. -+..+-|. +++=-.||.+.+... +-..|+||...+..
T Consensus 186 ~~~CPICL~~~~---~p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCC---cccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 789999997653 24445566 466678998888665 45899999998776
No 63
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=65.75 E-value=2.4 Score=34.87 Aligned_cols=32 Identities=28% Similarity=0.588 Sum_probs=23.8
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHH
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAV 302 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~ 302 (431)
++..|.+|....+. +.-.+.||+ +.+|..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~-----~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCG-----HVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCC-----eEEeccccc
Confidence 45779999887754 344567875 589999975
No 64
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=65.61 E-value=8.2 Score=36.52 Aligned_cols=39 Identities=23% Similarity=0.643 Sum_probs=27.4
Q ss_pred CCCcceeeccccCCCCCceecccC----------CCCcccccCHHHHHHHHHhc
Q 014057 265 EEAVCRICFIELGEGFDALKMECG----------CKGELAFAHRECAVKWFSIK 308 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~----------CkGsLk~VH~~CL~kW~~~s 308 (431)
|+..|-||++-. .+.+.+-|+ |.. .|-|..||++.-+..
T Consensus 1 ed~~CpICme~P---HNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~ 49 (162)
T PF07800_consen 1 EDVTCPICMEHP---HNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAY 49 (162)
T ss_pred CCccCceeccCC---CceEEEEeccccCCccccccCC--ccchhHHHHHHHHHh
Confidence 457899998653 455545443 654 478999999997654
No 65
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=65.29 E-value=4.9 Score=49.11 Aligned_cols=55 Identities=24% Similarity=0.700 Sum_probs=38.0
Q ss_pred CCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhc--------CCcccccccceeeec
Q 014057 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------GNKTCEVCKQEVENL 323 (431)
Q Consensus 264 Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~s--------gs~~CEICk~~y~n~ 323 (431)
+.+++|-||+.|.-.-.-.+.+.|. +.+|-.|..+-+..+ |-..|+||+.....+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 4569999999764321222334444 689999997655544 347999999998765
No 66
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.00 E-value=11 Score=40.05 Aligned_cols=59 Identities=29% Similarity=0.568 Sum_probs=39.0
Q ss_pred CCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeeccce
Q 014057 260 EDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVT 326 (431)
Q Consensus 260 Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~pv~ 326 (431)
||.+|++..|-||-.... =.-..||.-+ +-..|..+-..--..+.|.+|+++..-+-++
T Consensus 55 ddtDEen~~C~ICA~~~T---Ys~~~PC~H~-----~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT 113 (493)
T COG5236 55 DDTDEENMNCQICAGSTT---YSARYPCGHQ-----ICHACAVRLRALYMQKGCPLCRTETEAVVFT 113 (493)
T ss_pred cccccccceeEEecCCce---EEEeccCCch-----HHHHHHHHHHHHHhccCCCccccccceEEEe
Confidence 344556789999976542 2346899832 2335666655544678999999998776443
No 67
>PRK05978 hypothetical protein; Provisional
Probab=62.06 E-value=14 Score=34.45 Aligned_cols=20 Identities=10% Similarity=0.426 Sum_probs=15.5
Q ss_pred HHHHhcCCcccccccceeeecc
Q 014057 303 KWFSIKGNKTCEVCKQEVENLP 324 (431)
Q Consensus 303 kW~~~sgs~~CEICk~~y~n~p 324 (431)
.+++. +..|+.|+.+|...+
T Consensus 47 g~Lkv--~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 47 AFLKP--VDHCAACGEDFTHHR 66 (148)
T ss_pred ccccc--CCCccccCCccccCC
Confidence 45544 678999999998874
No 68
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=61.19 E-value=8.9 Score=40.26 Aligned_cols=36 Identities=28% Similarity=0.689 Sum_probs=26.9
Q ss_pred cccCCCCcccccCHHHHHHHHHhcC-----------Ccccccccceeeec
Q 014057 285 MECGCKGELAFAHRECAVKWFSIKG-----------NKTCEVCKQEVENL 323 (431)
Q Consensus 285 ~PC~CkGsLk~VH~~CL~kW~~~sg-----------s~~CEICk~~y~n~ 323 (431)
.+|.|+- .-=-+|+-|||..+. +-.|+.|+..|-.+
T Consensus 307 ~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 307 QQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 3577763 234589999998774 57999999998765
No 69
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=59.82 E-value=5 Score=29.70 Aligned_cols=22 Identities=32% Similarity=0.759 Sum_probs=16.1
Q ss_pred ccCHHHHHHHHHhcCCcccccc
Q 014057 295 FAHRECAVKWFSIKGNKTCEVC 316 (431)
Q Consensus 295 ~VH~~CL~kW~~~sgs~~CEIC 316 (431)
-+|..|+.++|+...+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 3899999999999888899987
No 70
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.98 E-value=5.4 Score=43.31 Aligned_cols=53 Identities=26% Similarity=0.720 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 256 DDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 256 ~~~~Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
....|+..+.++.|+||+.+. ..-+.+|. |..|+.+|... ...|++|.....+
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~l~~~~~~--~~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 469 EATPSQLREPNDVCAICYQEM----SARITPCS--------HALCLRKWLYV--QEVCPLCHTYMKE 521 (543)
T ss_pred CCChhhhhcccCcchHHHHHH----Hhcccccc--------chhHHHhhhhh--ccccCCCchhhhc
Confidence 345566677889999998775 12234554 99999999977 5679999877554
No 71
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.61 E-value=9.2 Score=40.27 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCccceeeehhHHHHHHHHHH
Q 014057 354 VPILVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLAS 397 (431)
Q Consensus 354 ~pvLViiSmL~yF~FLeqLLv~~~gt~aiaislPfs~vlGll~s 397 (431)
+-+++.+.+|+..||= |.-..|.-+..+++++.+++|+.+.+
T Consensus 193 l~~~fvl~tlaivLFP--LWP~~mR~gvyY~sig~~gfl~~Ilv 234 (372)
T KOG2927|consen 193 LGVLFVLVTLAIVLFP--LWPRRMRQGVYYLSIGAGGFLAFILV 234 (372)
T ss_pred HHHHHHHHHHHHHhcc--cCcHHHhcceeeeecchhHHHHHHHH
Confidence 3334444455555553 44455666666778877666654433
No 72
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.15 E-value=6.6 Score=40.99 Aligned_cols=56 Identities=21% Similarity=0.450 Sum_probs=38.2
Q ss_pred CCCCcceeeccccCCCC----CceecccCCCCcccccCHHHHHHHHHhcC-----Ccccccccceeeec
Q 014057 264 EEEAVCRICFIELGEGF----DALKMECGCKGELAFAHRECAVKWFSIKG-----NKTCEVCKQEVENL 323 (431)
Q Consensus 264 Eee~vCRICl~e~~e~~----~~Li~PC~CkGsLk~VH~~CL~kW~~~sg-----s~~CEICk~~y~n~ 323 (431)
..+.+|-||++...+.- ..-++| +|+ +.+=..|+.+|...+. ++.|++|+..-.++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilp-nC~---H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILP-NCN---HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCC-Ccc---hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 45799999987654311 011345 333 3455689999997766 69999999887765
No 73
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=57.28 E-value=13 Score=31.46 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCCcceeeccccC--CCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeecc
Q 014057 265 EEAVCRICFIELG--EGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324 (431)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~p 324 (431)
...+|.||-++.+ +.+++++.-=.|. --|=+.|.+-=.+. |+..|+.|+++|.-..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~---fPvCr~CyEYErke-g~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECA---FPVCRPCYEYERKE-GNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS--------HHHHHHHHHT-S-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccC---CccchhHHHHHhhc-CcccccccCCCccccc
Confidence 4689999965543 4466664321231 23777887755543 8899999999998653
No 74
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=56.32 E-value=24 Score=29.78 Aligned_cols=67 Identities=9% Similarity=0.127 Sum_probs=44.5
Q ss_pred ceeechhHHHHHHHHHHH---HHHHHHhhcccCccceeeehhHHHHHHHHHHHHHHHHHhhhchhhcchhh
Q 014057 349 RVWQDVPILVIVSMLAYF---CFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMASHAGCHSCSAVH 416 (431)
Q Consensus 349 r~W~~~pvLViiSmL~yF---~FLeqLLv~~~gt~aiaislPfs~vlGll~s~~~~~mv~~~Y~~iy~~~~ 416 (431)
.+|++...|+++.++++| +...-++...++.-. +...|+++.++.-.++.+...++.-|+|.-.+++
T Consensus 5 ~yWr~n~rl~~~lL~iW~vvsfg~~~lfa~~Ln~~~-~~GfPlgfw~aaQGsi~~fviLi~~Ya~~mnrlD 74 (81)
T PF13937_consen 5 AYWRKNLRLIAILLAIWFVVSFGVGILFADELNQIT-FGGFPLGFWFAAQGSIIVFVILIFVYAWRMNRLD 74 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-eCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 477765545444444433 112244666665433 4578999999999999999999989988765543
No 75
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=51.95 E-value=6.8 Score=40.55 Aligned_cols=49 Identities=20% Similarity=0.447 Sum_probs=36.9
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
.-..||||.+-.. -+++.+|.- -+-.-|+.+-+.. .-.|++|..++...
T Consensus 24 s~lrC~IC~~~i~---ip~~TtCgH-----tFCslCIR~hL~~--qp~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRIS---IPCETTCGH-----TFCSLCIRRHLGT--QPFCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheee---cceeccccc-----chhHHHHHHHhcC--CCCCccccccHHhh
Confidence 3578999986653 467788873 4567888888866 56799999998765
No 76
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=50.91 E-value=5 Score=42.90 Aligned_cols=51 Identities=22% Similarity=0.509 Sum_probs=40.4
Q ss_pred CCCCcceeeccccCCC-CCceecccCCCCcccccCHHHHHHHHHhcCCcccccccce
Q 014057 264 EEEAVCRICFIELGEG-FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (431)
Q Consensus 264 Eee~vCRICl~e~~e~-~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~ 319 (431)
|-+-.|-.|-+..+.. ++.--+||. +.+|..|+...+...+.+.|+-|+.-
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4568899996655433 344569998 59999999999999999999999943
No 77
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=50.90 E-value=6.5 Score=42.60 Aligned_cols=55 Identities=16% Similarity=0.423 Sum_probs=40.8
Q ss_pred CcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhc------CCcccccccceeeecc
Q 014057 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK------GNKTCEVCKQEVENLP 324 (431)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~s------gs~~CEICk~~y~n~p 324 (431)
.+|-+|+++.....+.++--|.|+ .++|+.|-+--.+.. ..+.|.+|...-..++
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 349999977655567777778897 699999976554322 3589999998877665
No 78
>PF15013 CCSMST1: CCSMST1 family
Probab=48.01 E-value=19 Score=30.27 Aligned_cols=23 Identities=39% Similarity=0.758 Sum_probs=14.7
Q ss_pred cceeechhHHHH-HHHHHHHHHHH
Q 014057 348 YRVWQDVPILVI-VSMLAYFCFLE 370 (431)
Q Consensus 348 ~r~W~~~pvLVi-iSmL~yF~FLe 370 (431)
..-||-+++.+. ++.|+|||||-
T Consensus 28 ~PWyq~~~is~sl~~fliyFC~lR 51 (77)
T PF15013_consen 28 MPWYQVYPISLSLAAFLIYFCFLR 51 (77)
T ss_pred CcceeeehhHHHHHHHHHHHhhcc
Confidence 457777765443 44566999973
No 79
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=46.68 E-value=8.6 Score=40.56 Aligned_cols=47 Identities=23% Similarity=0.426 Sum_probs=36.4
Q ss_pred CCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
--.|-||++-. .-+++.||+- -+-.-|+.+.+.. ...|+.|..++.-
T Consensus 23 lLRC~IC~eyf---~ip~itpCsH-----tfCSlCIR~~L~~--~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYF---NIPMITPCSH-----TFCSLCIRKFLSY--KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHh---cCceeccccc-----hHHHHHHHHHhcc--CCCCCceecccch
Confidence 46899999665 3488999873 4556789999977 6779999988764
No 80
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=46.48 E-value=49 Score=27.70 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=44.0
Q ss_pred eeechhHHHHHHHHHHHH---HHHHHhhcccCccceeeehhHHHHHHHHHHHHHHHHHhhhchhhcchhh
Q 014057 350 VWQDVPILVIVSMLAYFC---FLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMASHAGCHSCSAVH 416 (431)
Q Consensus 350 ~W~~~pvLViiSmL~yF~---FLeqLLv~~~gt~aiaislPfs~vlGll~s~~~~~mv~~~Y~~iy~~~~ 416 (431)
+|++...|+++.++++|. -+.-++...|+.-. +...|+++.++.-.++.....++.-|+|.-.+++
T Consensus 2 ywr~n~~li~~lL~iWf~vsfg~~~lf~~~Ln~~~-~~GfPlgfw~aaQGsi~~fviLi~~Ya~~m~rlD 70 (77)
T TIGR03647 2 YWRANLRLIAVLLAIWFVVSFGAGILFADELNSFT-FFGFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLD 70 (77)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCe-eCCCChHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566555454444444432 12224666666544 4589999999999999999998888888766554
No 81
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.59 E-value=22 Score=36.18 Aligned_cols=57 Identities=23% Similarity=0.422 Sum_probs=41.4
Q ss_pred CCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHH-HHHhcCCcccccccceeeeccc
Q 014057 260 EDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVK-WFSIKGNKTCEVCKQEVENLPV 325 (431)
Q Consensus 260 Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~k-W~~~sgs~~CEICk~~y~n~pv 325 (431)
-.+++....|-||++.. ..+...||. +.+=-.||.. |-.. ....|++|+....-..|
T Consensus 209 pfip~~d~kC~lC~e~~---~~ps~t~Cg-----HlFC~~Cl~~~~t~~-k~~~CplCRak~~pk~v 266 (271)
T COG5574 209 PFIPLADYKCFLCLEEP---EVPSCTPCG-----HLFCLSCLLISWTKK-KYEFCPLCRAKVYPKKV 266 (271)
T ss_pred Ccccccccceeeeeccc---CCccccccc-----chhhHHHHHHHHHhh-ccccCchhhhhccchhh
Confidence 35566778999998765 457788887 4667788888 7654 34569999988665443
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=40.28 E-value=17 Score=33.62 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=40.4
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
---+|-||.+... ++.+..|=.|-|. +.----|+.-|---.-.-+|++||+.|...
T Consensus 79 ~lYeCnIC~etS~--ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSA--EERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccc--hhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 4578999986643 4567778666663 334445678887776778999999999865
No 83
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.85 E-value=23 Score=37.75 Aligned_cols=54 Identities=26% Similarity=0.624 Sum_probs=38.5
Q ss_pred CCCCC-CCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeee
Q 014057 259 GEDIP-EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (431)
Q Consensus 259 ~Edi~-Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n 322 (431)
+-+.+ -|+..|-||+-+. -+.++.||+-+ --+.|+.+-+.. ++.|-.||.....
T Consensus 414 ~~~lp~sEd~lCpICyA~p---i~Avf~PC~H~-----SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 414 NKDLPDSEDNLCPICYAGP---INAVFAPCSHR-----SCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cCCCCCcccccCcceeccc---chhhccCCCCc-----hHHHHHHHHHhc--CCeeeEecceeee
Confidence 33444 3679999998664 46788999843 234677776654 7899999999875
No 84
>PF04641 Rtf2: Rtf2 RING-finger
Probab=38.74 E-value=34 Score=33.76 Aligned_cols=53 Identities=21% Similarity=0.427 Sum_probs=38.0
Q ss_pred CCCCCcceeeccccCCCCC-ceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 263 PEEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 263 ~Eee~vCRICl~e~~e~~~-~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
.+...+|-|+..+...... ..+.||.| .+-+.||.+- +....|++|+..|...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~---k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL---KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh---cccccccccCCccccC
Confidence 3456899998877642222 34679998 7778888776 2456799999999954
No 85
>PRK10692 hypothetical protein; Provisional
Probab=37.07 E-value=91 Score=27.18 Aligned_cols=28 Identities=18% Similarity=0.040 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHH-------------hhhchhhcc
Q 014057 386 LPFSCILGLLASTTATTMA-------------SHAGCHSCS 413 (431)
Q Consensus 386 lPfs~vlGll~s~~~~~mv-------------~~~Y~~iy~ 413 (431)
+|=.++-|.+.++++++++ .-||.|+.-
T Consensus 38 Lp~~~~~gal~~IFiGAllWL~GArigGRE~VaDRYwwvkh 78 (92)
T PRK10692 38 LPQFFAHGALLSIFVGALLWLAGARVGGREQVADRYWWVRH 78 (92)
T ss_pred chHHHHhhHHHHHHHHHHHHHhcccccCcchhhhhHHHHhh
Confidence 7777778888888888774 567888763
No 86
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=35.68 E-value=43 Score=39.75 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=23.5
Q ss_pred cceeechhHHHHHHHHHHHHHHHHHhhcccC
Q 014057 348 YRVWQDVPILVIVSMLAYFCFLEELLVGKMK 378 (431)
Q Consensus 348 ~r~W~~~pvLViiSmL~yF~FLeqLLv~~~g 378 (431)
.+-|.-..+++.|.||+.|.++-..+...+|
T Consensus 930 ~~k~y~ltFi~SIiwIsi~SyilV~~at~IG 960 (1096)
T TIGR00927 930 ARKFFVITFLGSIMWIAMFSYLMVWWAHQVG 960 (1096)
T ss_pred ccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3568888888888898888777666666665
No 87
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.63 E-value=29 Score=34.96 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=38.4
Q ss_pred CCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcC------Ccccccccceee
Q 014057 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKG------NKTCEVCKQEVE 321 (431)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sg------s~~CEICk~~y~ 321 (431)
..-||.|-.... +++...+-|- +.+|-+||..|-..-. ...|+-|..++-
T Consensus 50 ~pNC~LC~t~La-~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLA-SGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccc-cCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 467999987775 4667777775 6899999999976532 378999998753
No 88
>PRK02935 hypothetical protein; Provisional
Probab=35.33 E-value=34 Score=30.58 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=17.9
Q ss_pred eeehhHHHHHHHHHHHHHHHHHhhhchhh
Q 014057 383 AISLPFSCILGLLASTTATTMASHAGCHS 411 (431)
Q Consensus 383 aislPfs~vlGll~s~~~~~mv~~~Y~~i 411 (431)
-+...+..++|+++.|..+.+ |.||
T Consensus 37 ~~~m~ifm~~G~l~~l~S~vv----YFwi 61 (110)
T PRK02935 37 IIIMTIFMLLGFLAVIASTVV----YFWI 61 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 345667778999888877766 5665
No 89
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=35.20 E-value=6.2 Score=36.27 Aligned_cols=34 Identities=24% Similarity=0.745 Sum_probs=27.9
Q ss_pred CceecccCCCCcccccCHHHHHHHHHhcCCccccccc
Q 014057 281 DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317 (431)
Q Consensus 281 ~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk 317 (431)
..+.++|.|. .|+|.+|-...|.++|...|--..
T Consensus 31 RRIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~ 64 (134)
T PF01440_consen 31 RRIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSR 64 (134)
T ss_pred CccccCCCCE---EEeecccCCCCcCCCcCccCCCcC
Confidence 4556999997 799999999999999987776443
No 90
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.05 E-value=17 Score=29.26 Aligned_cols=49 Identities=18% Similarity=0.550 Sum_probs=30.2
Q ss_pred CcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeec
Q 014057 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (431)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~ 323 (431)
++|-||++... +.+.--|.-. ..-++|..+-.+- +.-.|+||+...+.+
T Consensus 8 dECTICye~pv---dsVlYtCGHM----CmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPV---DSVLYTCGHM----CMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcc---hHHHHHcchH----HhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 78999997653 2222333311 1235787665543 677899999876543
No 91
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=32.88 E-value=17 Score=36.47 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=25.6
Q ss_pred cccCCCCc-ccccCHHHHHHHHHhcCCccccccccee
Q 014057 285 MECGCKGE-LAFAHRECAVKWFSIKGNKTCEVCKQEV 320 (431)
Q Consensus 285 ~PC~CkGs-Lk~VH~~CL~kW~~~sgs~~CEICk~~y 320 (431)
-.|.|.+= +.|+|..|+--=..-+|++.|+-|+..-
T Consensus 233 i~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 233 IGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred cccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 35666543 4899999975444556889999998753
No 92
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=32.35 E-value=1.1e+02 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.020 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHH-------------Hhhhchhhc
Q 014057 386 LPFSCILGLLASTTATTM-------------ASHAGCHSC 412 (431)
Q Consensus 386 lPfs~vlGll~s~~~~~m-------------v~~~Y~~iy 412 (431)
+|=.+.-|.+.+++++++ |.-||.|+.
T Consensus 38 Lp~~~~~gal~~IFiGAllWL~GARigGrE~VaDRYwWvk 77 (89)
T PF10762_consen 38 LPQFLAHGALFSIFIGALLWLVGARIGGREKVADRYWWVK 77 (89)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhcccccCcchhhhhHHHHH
Confidence 776677777777777777 456788876
No 93
>COG4291 Predicted membrane protein [Function unknown]
Probab=32.30 E-value=1.4e+02 Score=29.80 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccceeeehhHHHHHHHHHHHHHHHHHhhhchhhcch-------hheehhc-------
Q 014057 356 ILVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMASHAGCHSCSA-------VHICWVW------- 421 (431)
Q Consensus 356 vLViiSmL~yF~FLeqLLv~~~gt~aiaislPfs~vlGll~s~~~~~mv~~~Y~~iy~~-------~~~c~~~------- 421 (431)
+-|++|+...|+.|.|- -+.+ .+.+-|.+.--.|+=+++=+|..=-|.+.|=. .......
T Consensus 94 vav~vslVslf~~ln~a----~~~~--~v~l~~a~~sV~lgWltIh~m~alHYAhlYw~~a~~d~~~~~~~rg~~fp~~~ 167 (228)
T COG4291 94 VAVIVSLVSLFLLLNQA----NSGQ--TVHLGFALASVALGWLTIHMMTALHYAHLYWRPAGDDPGEKPIKRGLDFPETP 167 (228)
T ss_pred HHHHHHHHHHHHHHHhc----CCCC--eeehhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccCCCCCCCCC
Confidence 45778888888877652 1112 34455555555556667777777788888833 3344433
Q ss_pred cCCcceecc
Q 014057 422 NHNGWNFYS 430 (431)
Q Consensus 422 ~~~~~~~~~ 430 (431)
+-++|.|.|
T Consensus 168 ~P~g~DFLY 176 (228)
T COG4291 168 EPDGWDFLY 176 (228)
T ss_pred CCCccchhh
Confidence 267898876
No 94
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=29.83 E-value=96 Score=26.31 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=15.6
Q ss_pred eehhHHHHHHHHHHHHHHHHHhhhch
Q 014057 384 ISLPFSCILGLLASTTATTMASHAGC 409 (431)
Q Consensus 384 islPfs~vlGll~s~~~~~mv~~~Y~ 409 (431)
....+..+++++..+...++..||.+
T Consensus 46 ~~~~~~~~~~l~~~i~~lal~vRRlh 71 (120)
T PF05656_consen 46 IFSILFIIFILLLFIPSLALTVRRLH 71 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455566666666655666666755
No 95
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=29.47 E-value=1.9e+02 Score=24.31 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHH-HHhh-cccCcccee-eehhHHHHHHHHHHHHHHHHHh
Q 014057 357 LVIVSMLAYFCFLE-ELLV-GKMKSGAIA-ISLPFSCILGLLASTTATTMAS 405 (431)
Q Consensus 357 LViiSmL~yF~FLe-qLLv-~~~gt~aia-islPfs~vlGll~s~~~~~mv~ 405 (431)
|.++.++.||.|.- ..+. .-|+.. ++ =.+++++++|++.-.++..+..
T Consensus 21 l~~i~l~~y~~~~ll~a~~p~~m~~~-v~~G~~t~g~~~g~~~~~~~~~l~~ 71 (91)
T PF04341_consen 21 LSAIFLVLYFGFVLLSAFAPELMATP-VFPGSLTLGIVLGLGQIVFAWVLTW 71 (91)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHcCc-ccCCCcCHHHHHHHHHHHHHHHHHH
Confidence 66666777776652 1111 122322 22 2477888888777666666644
No 96
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=28.47 E-value=54 Score=25.52 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=22.3
Q ss_pred eeehhHHHHHHHHHHHHHHHHHhhhchhh
Q 014057 383 AISLPFSCILGLLASTTATTMASHAGCHS 411 (431)
Q Consensus 383 aislPfs~vlGll~s~~~~~mv~~~Y~~i 411 (431)
++.+|+.|++|||..+..+++=.+.|...
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~K~ygYkht 32 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTLKAYGYKHT 32 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 45688999999999988888766666543
No 97
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.05 E-value=64 Score=34.57 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=42.0
Q ss_pred cceeechhHHHHHHHHHHHHHHHHHhhcccCccceee-ehhHHHHHHHHHHHHHHHHHhhhc-------------hhhcc
Q 014057 348 YRVWQDVPILVIVSMLAYFCFLEELLVGKMKSGAIAI-SLPFSCILGLLASTTATTMASHAG-------------CHSCS 413 (431)
Q Consensus 348 ~r~W~~~pvLViiSmL~yF~FLeqLLv~~~gt~aiai-slPfs~vlGll~s~~~~~mv~~~Y-------------~~iy~ 413 (431)
+..|.--+.++++..++.|+|+. .+.+.-.-+++ + -+|++|+++|+...+++..++ .|..+
T Consensus 130 i~i~r~d~krflvfv~gi~Lff~---ar~Lsrn~vFYYs--sG~v~GilaSLl~Viflv~rf~PKkt~~~~iliGgWs~s 204 (452)
T KOG3817|consen 130 INIIRLDLKRFLVFVVGILLFFS---ARRLSRNSVFYYS--SGIVIGILASLLVVIFLVARFFPKKTMMYGILIGGWSIS 204 (452)
T ss_pred EEEEeccHHHHHHHHHHHHHHHH---HHHhccCceEEEe--cccHHHHHHHHHHHHHHHHHhcccccceEEEEEccchhH
Confidence 35666445566666777666653 22222222332 2 247899999988888776554 35556
Q ss_pred hhheehhccC
Q 014057 414 AVHICWVWNH 423 (431)
Q Consensus 414 ~~~~c~~~~~ 423 (431)
-+-.|+.|.|
T Consensus 205 lY~i~ql~~n 214 (452)
T KOG3817|consen 205 LYVIKQLADN 214 (452)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 98
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=27.89 E-value=58 Score=36.17 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=27.0
Q ss_pred cceeeehhHHHHHHHHHHHHHH-----------------HHHhhhchhhcchhhe
Q 014057 380 GAIAISLPFSCILGLLASTTAT-----------------TMASHAGCHSCSAVHI 417 (431)
Q Consensus 380 ~aiaislPfs~vlGll~s~~~~-----------------~mv~~~Y~~iy~~~~~ 417 (431)
.+|.|++-|.++|.+|+++.++ .|-..+|.|=|+.||.
T Consensus 478 K~LWIsvAliVLLAaLlSfLtg~~fq~~vdaAp~~~GdSw~S~Qq~lWp~tGLqH 532 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLTGLFFQRCVDAAPVGTGDSWCSLQQLLWPYTGLQH 532 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhccCCCCCCccchhhHhhhcccccccC
Confidence 5556666666677777777665 4557899999988873
No 99
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=27.69 E-value=27 Score=39.02 Aligned_cols=50 Identities=24% Similarity=0.474 Sum_probs=36.7
Q ss_pred CCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHh---cCCcccccccceee
Q 014057 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI---KGNKTCEVCKQEVE 321 (431)
Q Consensus 264 Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~---sgs~~CEICk~~y~ 321 (431)
.++.+|.+|++.. ++.++.-|.. -+-+.|+..++.. ..+.+|+.|.....
T Consensus 534 k~~~~C~lc~d~a---ed~i~s~ChH-----~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPA---EDYIESSCHH-----KFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChh---hhhHhhhhhH-----HHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3678999999775 3467777773 4567899888643 34689999987644
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.67 E-value=35 Score=35.58 Aligned_cols=35 Identities=23% Similarity=0.583 Sum_probs=26.6
Q ss_pred cCCCCcccccCHHHHHHHHHhc-----------CCcccccccceeeecc
Q 014057 287 CGCKGELAFAHRECAVKWFSIK-----------GNKTCEVCKQEVENLP 324 (431)
Q Consensus 287 C~CkGsLk~VH~~CL~kW~~~s-----------gs~~CEICk~~y~n~p 324 (431)
|-|+- .--++||-+||.-+ |+-+|+.|+..|-..-
T Consensus 323 c~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 323 CICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred ccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 45652 45679999999654 5689999999987654
No 101
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=26.92 E-value=59 Score=27.57 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=12.6
Q ss_pred Ccccccccceeeecc
Q 014057 310 NKTCEVCKQEVENLP 324 (431)
Q Consensus 310 s~~CEICk~~y~n~p 324 (431)
...|+.|+.+|...+
T Consensus 8 ~~~C~~CG~d~~~~~ 22 (86)
T PF06170_consen 8 APRCPHCGLDYSHAR 22 (86)
T ss_pred CCcccccCCccccCC
Confidence 578999999998763
No 102
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.05 E-value=25 Score=37.45 Aligned_cols=52 Identities=25% Similarity=0.569 Sum_probs=37.1
Q ss_pred CCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCcccccccceeeecc
Q 014057 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324 (431)
Q Consensus 263 ~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~n~p 324 (431)
.-.+..|-||..-. .++...||.-.- =..|+++=+ ..+..|++|+.++.-.+
T Consensus 81 ~~sef~c~vc~~~l---~~pv~tpcghs~-----c~~Cl~r~l--d~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 81 IRSEFECCVCSRAL---YPPVVTPCGHSF-----CLECLDRSL--DQETECPLCRDELVELP 132 (398)
T ss_pred ccchhhhhhhHhhc---CCCccccccccc-----cHHHHHHHh--ccCCCCcccccccccch
Confidence 35679999997665 357778998543 233777733 36889999999988644
No 103
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=25.12 E-value=42 Score=33.32 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCcceeeccccCCCCCceecccCCCCcccccCHHHHHHHHHhcCCccccccccee
Q 014057 256 DDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEV 320 (431)
Q Consensus 256 ~~~~Edi~Eee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y 320 (431)
.+.+|+| -..|-||..... .+++..|. +++-..|+.+=+ +....|-+|+..-
T Consensus 189 ~~~~e~I---PF~C~iCKkdy~---spvvt~CG-----H~FC~~Cai~~y--~kg~~C~~Cgk~t 240 (259)
T COG5152 189 SGPGEKI---PFLCGICKKDYE---SPVVTECG-----HSFCSLCAIRKY--QKGDECGVCGKAT 240 (259)
T ss_pred cCCCCCC---ceeehhchhhcc---chhhhhcc-----hhHHHHHHHHHh--ccCCcceecchhh
Confidence 4556666 389999987653 47788887 356667776544 4478899999873
No 104
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=24.84 E-value=1.7e+02 Score=26.39 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhcccCccceeeehhHHHHHHHHHHHHHHH
Q 014057 358 VIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATT 402 (431)
Q Consensus 358 ViiSmL~yF~FLeqLLv~~~gt~aiaislPfs~vlGll~s~~~~~ 402 (431)
+++++++.|+|.-....... --.+.++-+++||+.+++...
T Consensus 85 ilvsv~~~~~~~~~~~~~~~----~~~~~~~Rvllgl~~al~vlv 125 (142)
T PF11712_consen 85 ILVSVFAVFFAGWYWAGYSF----GGWSFPYRVLLGLFGALLVLV 125 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHH
Confidence 45666665544432111111 124577777888887776543
No 105
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=24.57 E-value=30 Score=41.18 Aligned_cols=54 Identities=31% Similarity=0.551 Sum_probs=35.2
Q ss_pred CCCCcceeeccccCCCCCceecccC-CCCcccccCHHHHHHHHHhcCCcccccccceee
Q 014057 264 EEEAVCRICFIELGEGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (431)
Q Consensus 264 Eee~vCRICl~e~~e~~~~Li~PC~-CkGsLk~VH~~CL~kW~~~sgs~~CEICk~~y~ 321 (431)
++..+|-||++..+...+. +.-|. |+ -+||++|.-.=+..-|.+.|--|-+.=+
T Consensus 217 ~~D~~C~iC~~~~~~n~n~-ivfCD~Cn---l~VHq~Cygi~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNV-IVFCDGCN---LAVHQECYGIPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CCCccceeecccccCCCce-EEEcCCCc---chhhhhccCCCCCCCCcEeehhhccCcC
Confidence 3569999999876543343 34443 54 6899999873334446677877766533
No 106
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=24.28 E-value=62 Score=24.22 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q 014057 359 IVSMLAYFCFL 369 (431)
Q Consensus 359 iiSmL~yF~FL 369 (431)
.+.||++|||.
T Consensus 21 v~imliif~f~ 31 (43)
T PF11395_consen 21 VIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHH
Confidence 34488888885
No 107
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.91 E-value=67 Score=29.01 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=19.8
Q ss_pred eehhHHHHHHHHHHHHHHHHHhhhchhhcchhh
Q 014057 384 ISLPFSCILGLLASTTATTMASHAGCHSCSAVH 416 (431)
Q Consensus 384 islPfs~vlGll~s~~~~~mv~~~Y~~iy~~~~ 416 (431)
+.+.+..+||+|+.+..++....--...++|+|
T Consensus 37 ~im~ifmllG~L~~l~S~~VYfwIGmlStkav~ 69 (114)
T PF11023_consen 37 IIMVIFMLLGLLAILASTAVYFWIGMLSTKAVQ 69 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccee
Confidence 456677889988887777663322222345554
No 108
>COG4327 Predicted membrane protein [Function unknown]
Probab=23.89 E-value=52 Score=28.96 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=44.4
Q ss_pred ceeechhHHHH----HHHHHHHHHHHHHhhcccCccceeeehhHHHHHHHHHHHHHHHHHhhhchhhcchh
Q 014057 349 RVWQDVPILVI----VSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMASHAGCHSCSAV 415 (431)
Q Consensus 349 r~W~~~pvLVi----iSmL~yF~FLeqLLv~~~gt~aiaislPfs~vlGll~s~~~~~mv~~~Y~~iy~~~ 415 (431)
.+|..-.-|+. |-+|.-|.+ .+++.++.+-. +...||.+.++-=.|+.+...++.-|+|.--+|
T Consensus 12 aywranttli~~lL~vwflVSfvv--i~fa~alst~r-ifg~pf~ywma~QGsiitfVvlifvya~r~nkl 79 (101)
T COG4327 12 AYWRANTTLIAALLGVWFLVSFVV--ILFARALSTMR-IFGWPFGYWMAQQGSIITFVVLIFVYAWRMNKL 79 (101)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH--HHHHHhhcccE-EeccchhhhhhcCCCeeehHHHHHHHHHHHhHH
Confidence 36775433333 333333333 67888888765 457899999999889888888888898876554
No 109
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=23.21 E-value=43 Score=37.97 Aligned_cols=31 Identities=26% Similarity=0.647 Sum_probs=24.5
Q ss_pred cccCCCCcccccCHHHHHHHHHhc---------CCccccccc
Q 014057 285 MECGCKGELAFAHRECAVKWFSIK---------GNKTCEVCK 317 (431)
Q Consensus 285 ~PC~CkGsLk~VH~~CL~kW~~~s---------gs~~CEICk 317 (431)
.-|.|.| ++.|..|+.-|++.. .-+.||-|+
T Consensus 36 ~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 36 LACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred hhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 5588776 588999999999765 237888888
No 110
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.14 E-value=44 Score=38.36 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=38.2
Q ss_pred CcceeeccccCCCCCceecccCCCCcccccCHHHH-------HHHHHhcC-------Ccccccccceeeecc
Q 014057 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECA-------VKWFSIKG-------NKTCEVCKQEVENLP 324 (431)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL-------~kW~~~sg-------s~~CEICk~~y~n~p 324 (431)
.-|-+|-+|-+=.+++|+ .|.=.+=--.|||.|- -.||=.|- ..+||+|-+++-.+.
T Consensus 6 GGCCVCSDErGWaeNPLV-YCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALK 76 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLV-YCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALK 76 (900)
T ss_pred cceeeecCcCCCccCcee-eecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCccccee
Confidence 458889877654467774 3331111246999997 46885542 479999999988764
No 111
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=23.14 E-value=35 Score=20.28 Aligned_cols=12 Identities=17% Similarity=0.708 Sum_probs=8.3
Q ss_pred ccccccceeeec
Q 014057 312 TCEVCKQEVENL 323 (431)
Q Consensus 312 ~CEICk~~y~n~ 323 (431)
.|++|+..|...
T Consensus 2 ~C~~C~~~~~~~ 13 (24)
T PF13894_consen 2 QCPICGKSFRSK 13 (24)
T ss_dssp E-SSTS-EESSH
T ss_pred CCcCCCCcCCcH
Confidence 699999998765
No 112
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=23.13 E-value=1.1e+02 Score=22.71 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.8
Q ss_pred ehhHHHHHHHHHHHHHHHHHh
Q 014057 385 SLPFSCILGLLASTTATTMAS 405 (431)
Q Consensus 385 slPfs~vlGll~s~~~~~mv~ 405 (431)
.+.|.+|+|++..-.++-+|.
T Consensus 4 plL~GiVlGli~vtl~Glfv~ 24 (37)
T PF02529_consen 4 PLLSGIVLGLIPVTLAGLFVA 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhHHHHHHHHHHH
Confidence 367899999999888888877
No 113
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=22.69 E-value=96 Score=24.59 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=25.3
Q ss_pred CCCcceeeccccCCCCCceecccCCCCcccccCHHHHH
Q 014057 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAV 302 (431)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CkGsLk~VH~~CL~ 302 (431)
.+..|-+|-....++++.++-| .|+ +-.|+.|.+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp-~Cg---apyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCP-ECG---APYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECC-CCC---CcccHHHHh
Confidence 4678999988776566777777 564 578999943
No 114
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.64 E-value=76 Score=28.06 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=7.7
Q ss_pred eechhHHHHHHHHHHH
Q 014057 351 WQDVPILVIVSMLAYF 366 (431)
Q Consensus 351 W~~~pvLViiSmL~yF 366 (431)
|.-+.|||++.+|.+|
T Consensus 2 W~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLF 17 (130)
T ss_pred eeeHHHHHHHHHHHHH
Confidence 6555555444444433
No 115
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=21.57 E-value=94 Score=32.13 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcccCccceeeehhHHHHHHHHHHHHHHHHHhhhchhhcchhheehhc
Q 014057 364 AYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMASHAGCHSCSAVHICWVW 421 (431)
Q Consensus 364 ~yF~FLeqLLv~~~gt~aiaislPfs~vlGll~s~~~~~mv~~~Y~~iy~~~~~c~~~ 421 (431)
..+++|+.++..+.|..++-++-|.|.-.++++++.+..+.-++..- +--+-||+.|
T Consensus 151 sv~l~L~~~ff~~y~~s~~~vs~~lS~na~v~~sv~LaSRl~~~~~v-F~fllfai~~ 207 (292)
T KOG3059|consen 151 SVWLLLGNLFFHDYGISTIRVSGPLSLNAAVSASVLLASRLEKSIHV-FNFLLFAIQL 207 (292)
T ss_pred HHHHHHHHHhcccccccccccCCcchHHHHHHHHHHHHHhcCCchHH-HHHHHHHHHH
Confidence 35688899999999999988988999999999988888877765443 3333344433
No 116
>PRK03072 heat shock protein HtpX; Provisional
Probab=20.87 E-value=1.3e+02 Score=30.19 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCccceeeehhHHHHHHHHHHHHHHHHHhhhc
Q 014057 357 LVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMASHAG 408 (431)
Q Consensus 357 LViiSmL~yF~FLeqLLv~~~gt~aiaislPfs~vlGll~s~~~~~mv~~~Y 408 (431)
++++.+.+.|+.+-.++ |...+.+++.|++++-+++......++.+.|
T Consensus 12 ~l~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 59 (288)
T PRK03072 12 LLLGGMSALIVFIGALF----GRTGLGIAVLIAVGMNAYVYWNSDKLALRAM 59 (288)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 44444444555554445 4444556667777777777667777766654
No 117
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.36 E-value=64 Score=24.16 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=17.0
Q ss_pred cceeechhHHHHHHHHHHHHHH
Q 014057 348 YRVWQDVPILVIVSMLAYFCFL 369 (431)
Q Consensus 348 ~r~W~~~pvLViiSmL~yF~FL 369 (431)
+-+-...|+.|++..|++|+|+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~ 34 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFF 34 (40)
T ss_pred EEEEEEechHHHHHHHHHHhhe
Confidence 3455578999999999888875
Done!