BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014059
         (431 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
          Length = 292

 Score = 31.6 bits (70), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 263 CLPH---PDKE-ETGGEDAHFISDKQAIGVADGVGGWANH-GVNAGLYSRELMSNSVAAI 317
           C+PH   P +E E  G D HF+S ++ +          NH  + AG Y+  L   SVA++
Sbjct: 128 CVPHTTRPKREYEVDGRDYHFVSSREQME-----RDIQNHLFIEAGQYNDNLYGTSVASV 182

Query: 318 QE 319
           +E
Sbjct: 183 RE 184


>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
 pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
          Length = 190

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 22/120 (18%)

Query: 293 GGWANHGVNAGLYSRELMSNSVAAIQEEPDGSI---DPARVLE--KAHSST------RAK 341
           G   + G+ A     E + NS+ +IQ+ P   I   D   +LE  KA++ +      R K
Sbjct: 1   GSSGSSGMTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYK 60

Query: 342 GSSTACIIALTDQGLR-----AINLGDSGFVVVRDGCTVFRSPVQQHDFNFTYQLEYGSN 396
            +    ++    +G       A+ LG  GFV VR    + R  + +     TY LEYG++
Sbjct: 61  NAGITKVVGTEARGFLFGAPVALGLG-VGFVPVRKPGKLPRETISE-----TYDLEYGTD 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,531,067
Number of Sequences: 62578
Number of extensions: 436637
Number of successful extensions: 986
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 9
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)