BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014060
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 128/361 (35%), Positives = 188/361 (52%), Gaps = 26/361 (7%)
Query: 78 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYA 137
D T YTG G A + L Y++ G+ L L+ + + + + R +TFLCG G A
Sbjct: 70 DGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCL--TKRSITFLCGDAGPLA 127
Query: 138 IGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFV 197
+ AV+ ++M + + + + + + + P P E +LYGR G+++A LFV
Sbjct: 128 VAAVLYHKMNNEKQAEDCITRLIHL--NKIDPHAPNE--------MLYGRIGYIYALLFV 177
Query: 198 NKHLGAGTLPNELLMPIVDAVLXX---XXXXXXXXXXCPLMYRWHGTRYWGAANGLAGIL 254
NK+ G +P + I + +L PLMY W+ Y GAA+GLAGI
Sbjct: 178 NKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIY 237
Query: 255 QVLLHFPLSEEDAED---VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAI 311
L+ L + VK ++ Y+ +FP SGNYP G+ RD LV W HGA GV
Sbjct: 238 YYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFP-SGNYPPCIGDNRDLLVHWCHGAPGVIY 296
Query: 312 TLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAFLSLYRLTGETI 370
L +A +VF ++ DA + +V+W+ GL+KK GL G+AGNAYAFL+LY LT +
Sbjct: 297 MLIQAYKVFREEKYLCDA-YQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMK 355
Query: 371 YVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYE 430
Y+ RA F+ + ++ R D +SLF+G+AGT DLL P ARFP +E
Sbjct: 356 YLYRACKFAEWCLEYGEH-----GCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 410
Query: 431 L 431
L
Sbjct: 411 L 411
>pdb|1KSA|A Chain A, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|1KSA|B Chain B, Crystal Structure Of The Bacteriochlorophyll A Protein
From Chlorobium Tepidum
pdb|3BSD|A Chain A, Light Harvesting Protein From Rc Of Chlorobium Tepidum
Length = 366
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 301 QWSHGATGVAITLCKASQVFPSDREFRDAAIEAG 334
++SHG +G+ ++ + +++FPSD+ R A +EAG
Sbjct: 224 RFSHGGSGMVDSISRWAELFPSDKLNRPAQVEAG 257
>pdb|3ENI|A Chain A, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
pdb|3ENI|C Chain C, Crystal Structure Of The Fenna-Matthews-Olson Protein From
Chlorobaculum Tepidum
Length = 365
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 25/34 (73%)
Query: 301 QWSHGATGVAITLCKASQVFPSDREFRDAAIEAG 334
++SHG +G+ ++ + +++FPSD+ R A +EAG
Sbjct: 223 RFSHGGSGMVDSISRWAELFPSDKLNRPAQVEAG 256
>pdb|1VJT|A Chain A, Crystal Structure Of Alpha-Glucosidase (Tm0752) From
Thermotoga Maritima At 2.50 A Resolution
Length = 483
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 237 RWHGTRYWGAANGLAGILQVLLHFPLSEEDAE-DVKGTLRYMMSNRFPQSGN--YPVSEG 293
RW G G +G+AG+ +V L E+ + V G + NRF G YP+ +
Sbjct: 183 RWTGANIVGFCHGVAGVYEVFEKLDLDPEEVDWQVAGVNHGIWLNRFRYRGEDAYPLLDE 242
Query: 294 NPRDKLVQWS 303
KL +W
Sbjct: 243 WIEKKLPEWE 252
>pdb|1L1Y|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L1Y|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|A Chain A, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|B Chain B, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|C Chain C, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|D Chain D, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|E Chain E, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
pdb|1L2A|F Chain F, The Crystal Structure And Catalytic Mechanism Of
Cellobiohydrolase Cels, The Major Enzymatic Component Of
The Clostridium Thermocellum Cellulosome
Length = 678
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 131 GRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPA 170
G+G A A +MGD R D F F++I + PA
Sbjct: 275 GKGSAVASVVSKAAKMGDFLRNDMFDKYFMKIGAQDKTPA 314
>pdb|3K7X|A Chain A, Crystal Structure Of The Lin0763 Protein From Listeria
Innocua. Northeast Structural Genomics Consortium Target
Lkr23
Length = 349
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 358 AFLSLYRLTGETIYVERANAFSSF-LYHNAQNLVTSGHTRGADHGYSLFQGL 408
A L LYR+T E IY++ AN ++ L ++ + G D G LF+G+
Sbjct: 221 ANLELYRITKEAIYLDTANKTAAISLKELTEDGIFKDEGNGGDEG--LFKGI 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,575,369
Number of Sequences: 62578
Number of extensions: 494072
Number of successful extensions: 860
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 9
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)