Query 014060
Match_columns 431
No_of_seqs 201 out of 781
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 01:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787 Lanthionine synthetase 100.0 6.4E-68 1.4E-72 483.8 32.4 364 45-431 35-403 (403)
2 cd04794 euk_LANCL eukaryotic L 100.0 3.2E-53 7E-58 418.4 33.0 333 82-427 1-343 (343)
3 PF05147 LANC_like: Lanthionin 100.0 5.8E-47 1.3E-51 375.7 13.2 345 76-430 2-354 (355)
4 cd04792 LanM-like LanM-like pr 100.0 4.5E-44 9.7E-49 391.3 35.1 347 61-428 467-823 (825)
5 cd04434 LanC_like LanC-like pr 100.0 9.2E-43 2E-47 343.4 32.6 324 82-421 1-336 (343)
6 COG4403 LcnDR2 Lantibiotic mod 100.0 2.8E-43 6.1E-48 359.6 26.0 349 38-423 589-955 (963)
7 cd04793 LanC LanC is the cycla 100.0 5.8E-43 1.2E-47 350.5 27.4 336 82-422 1-373 (382)
8 cd04791 LanC_SerThrkinase Lant 100.0 5E-39 1.1E-43 314.8 24.2 314 82-428 1-321 (321)
9 cd04434 LanC_like LanC-like pr 99.9 2.2E-25 4.8E-30 219.5 26.3 289 44-365 20-336 (343)
10 cd04794 euk_LANCL eukaryotic L 99.9 5.1E-25 1.1E-29 217.5 21.4 261 129-423 1-287 (343)
11 cd04792 LanM-like LanM-like pr 99.9 3E-24 6.4E-29 235.3 26.4 288 43-364 508-817 (825)
12 cd04791 LanC_SerThrkinase Lant 99.9 2E-23 4.3E-28 204.5 21.7 254 77-364 38-313 (321)
13 cd04793 LanC LanC is the cycla 99.9 1.5E-20 3.2E-25 188.5 22.9 271 129-423 1-310 (382)
14 PF05147 LANC_like: Lanthionin 99.8 2.3E-20 5E-25 185.0 15.6 289 42-365 25-345 (355)
15 COG4403 LcnDR2 Lantibiotic mod 99.8 1.2E-18 2.7E-23 179.6 22.8 279 41-366 662-954 (963)
16 KOG2787 Lanthionine synthetase 99.5 2E-12 4.4E-17 119.9 20.6 260 123-420 60-340 (403)
17 COG4225 Predicted unsaturated 97.0 0.08 1.7E-06 50.9 17.7 244 92-353 45-323 (357)
18 PF07470 Glyco_hydro_88: Glyco 96.7 0.35 7.7E-06 47.5 21.1 237 91-340 33-287 (336)
19 COG1331 Highly conserved prote 96.6 0.4 8.7E-06 50.6 21.0 239 78-337 269-567 (667)
20 cd00249 AGE AGE domain; N-acyl 96.5 1.1 2.3E-05 44.8 23.3 250 85-342 55-339 (384)
21 PF07944 DUF1680: Putative gly 96.2 0.063 1.4E-06 56.2 13.0 129 248-381 64-206 (520)
22 cd00249 AGE AGE domain; N-acyl 95.7 0.14 3.1E-06 51.2 12.2 139 247-386 52-209 (384)
23 PF07470 Glyco_hydro_88: Glyco 95.0 0.82 1.8E-05 45.0 15.1 205 190-417 30-261 (336)
24 PF07944 DUF1680: Putative gly 95.0 1.9 4.1E-05 45.2 18.2 228 85-334 66-331 (520)
25 COG3533 Uncharacterized protei 94.8 0.32 6.9E-06 49.2 11.2 135 244-381 66-209 (589)
26 TIGR02474 pec_lyase pectate ly 94.4 0.52 1.1E-05 45.0 11.1 133 249-384 45-217 (290)
27 COG1331 Highly conserved prote 94.3 2.3 4.9E-05 45.1 16.6 128 77-206 404-556 (667)
28 COG4225 Predicted unsaturated 92.9 9.7 0.00021 37.1 20.6 225 142-387 48-305 (357)
29 PF09492 Pec_lyase: Pectic aci 92.3 0.32 7E-06 46.4 6.1 131 250-383 41-211 (289)
30 PF03663 Glyco_hydro_76: Glyco 91.9 0.37 8.1E-06 48.2 6.5 116 265-385 113-256 (370)
31 PF07221 GlcNAc_2-epim: N-acyl 91.3 0.54 1.2E-05 46.4 6.8 123 262-386 37-175 (346)
32 KOG2429 Glycosyl hydrolase, fa 90.3 1.2 2.5E-05 45.7 8.0 118 42-162 148-290 (622)
33 COG3533 Uncharacterized protei 87.2 1.4 3E-05 44.8 6.1 61 44-114 149-209 (589)
34 PF07221 GlcNAc_2-epim: N-acyl 87.1 11 0.00024 37.1 12.7 240 87-339 25-309 (346)
35 PF03663 Glyco_hydro_76: Glyco 85.2 4.4 9.4E-05 40.5 8.7 110 262-384 53-189 (370)
36 PTZ00470 glycoside hydrolase f 83.8 17 0.00037 38.0 12.5 73 44-117 173-256 (522)
37 KOG2430 Glycosyl hydrolase, fa 82.3 16 0.00035 35.3 10.5 153 38-198 128-313 (587)
38 PTZ00470 glycoside hydrolase f 75.4 13 0.00028 38.9 8.4 73 312-385 163-257 (522)
39 PF09492 Pec_lyase: Pectic aci 73.7 47 0.001 31.9 11.0 166 80-282 35-215 (289)
40 PLN02993 lupeol synthase 72.1 44 0.00095 36.7 11.6 99 181-290 560-660 (763)
41 PF13243 Prenyltrans_1: Prenyl 69.0 5.1 0.00011 31.9 3.1 58 270-340 1-58 (109)
42 PF06917 Pectate_lyase_2: Peri 67.6 23 0.0005 36.3 7.8 74 309-386 389-473 (557)
43 KOG2429 Glycosyl hydrolase, fa 67.4 71 0.0015 33.3 11.2 120 257-382 208-403 (622)
44 TIGR02474 pec_lyase pectate ly 67.0 30 0.00066 33.2 8.2 142 186-340 45-218 (290)
45 PLN02993 lupeol synthase 66.8 1.5E+02 0.0032 32.8 14.2 84 244-338 560-649 (763)
46 PF01532 Glyco_hydro_47: Glyco 63.8 35 0.00076 35.1 8.7 74 43-117 96-178 (452)
47 PRK11097 endo-1,4-D-glucanase; 61.2 52 0.0011 32.9 8.9 80 304-384 116-213 (376)
48 COG2942 N-acyl-D-glucosamine 2 56.1 1.2E+02 0.0026 30.4 10.3 123 263-386 73-210 (388)
49 KOG2430 Glycosyl hydrolase, fa 52.6 69 0.0015 31.2 7.8 84 302-386 182-284 (587)
50 cd02889 SQCY Squalene cyclase 50.3 1.8E+02 0.0038 28.3 10.9 102 270-385 1-129 (348)
51 PLN03012 Camelliol C synthase 48.4 57 0.0012 35.8 7.4 94 187-291 566-661 (759)
52 PF00432 Prenyltrans: Prenyltr 46.0 18 0.0004 23.7 2.1 35 269-304 2-36 (44)
53 PF06662 C5-epim_C: D-glucuron 39.7 39 0.00085 30.3 3.9 35 347-383 29-63 (189)
54 PF00759 Glyco_hydro_9: Glycos 38.7 1.5E+02 0.0032 30.3 8.5 117 263-379 93-244 (444)
55 PLN02266 endoglucanase 38.5 3.4E+02 0.0074 28.4 11.0 116 263-378 129-280 (510)
56 PF06662 C5-epim_C: D-glucuron 36.7 45 0.00098 29.9 3.8 40 78-117 23-64 (189)
57 PF01532 Glyco_hydro_47: Glyco 35.0 42 0.00091 34.5 3.8 74 310-384 83-178 (452)
58 PLN03012 Camelliol C synthase 33.8 1.5E+02 0.0033 32.6 7.8 99 181-292 615-724 (759)
59 KOG2431 1, 2-alpha-mannosidase 33.5 1E+02 0.0022 31.1 5.8 76 43-119 192-277 (546)
60 PLN02613 endoglucanase 32.7 3.9E+02 0.0086 27.9 10.3 115 263-377 111-256 (498)
61 PLN02345 endoglucanase 30.1 4.5E+02 0.0097 27.3 10.2 68 309-376 147-228 (469)
62 PLN02909 Endoglucanase 29.0 6E+02 0.013 26.5 10.9 115 263-377 119-264 (486)
63 PLN02420 endoglucanase 28.3 4.8E+02 0.01 27.5 10.2 115 263-378 126-276 (525)
64 cd02889 SQCY Squalene cyclase 26.2 6E+02 0.013 24.5 13.2 28 255-282 33-60 (348)
65 KOG2204 Mannosyl-oligosacchari 25.5 2.2E+02 0.0047 29.9 6.8 90 44-134 280-381 (625)
66 TIGR03463 osq_cycl 2,3-oxidosq 23.2 9.7E+02 0.021 25.9 11.7 43 246-290 504-546 (634)
67 PF08047 His_leader: Histidine 23.1 54 0.0012 16.4 1.0 16 1-16 1-16 (16)
68 PLN02340 endoglucanase 23.1 8.8E+02 0.019 26.1 11.1 115 263-379 115-265 (614)
69 TIGR01507 hopene_cyclase squal 22.8 6.7E+02 0.015 27.1 10.4 109 257-379 5-120 (635)
No 1
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=100.00 E-value=6.4e-68 Score=483.79 Aligned_cols=364 Identities=52% Similarity=0.920 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCC
Q 014060 45 ETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTR 124 (431)
Q Consensus 45 ~~~l~~A~~i~~~l~~~~w~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~ 124 (431)
|.+...|.+|.|.++..+|-... + .+.+.++|+|.+|||+++.++|++|.|+.++..+.++++.+...-.+ ..
T Consensus 35 e~~~r~~~~ikd~~~~~~~~~S~--d----~~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s-~~ 107 (403)
T KOG2787|consen 35 EFIKRLATKIKDLVVEMTWGKSG--D----EVRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLVASRS-SR 107 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--C----CCcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccc-cC
Confidence 78889999999999999997543 1 12578999999999999999999999999999999999988742222 46
Q ss_pred cccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCC
Q 014060 125 HVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAG 204 (431)
Q Consensus 125 ~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~ 204 (431)
.++|.+|.+|++++.+++++.+++++..+..+.++..+. ..+ .+-++|+++|.||++++++++.+..+.+
T Consensus 108 ~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~---~~~-------~dlp~ElLyGRaGYL~a~lflNk~ig~~ 177 (403)
T KOG2787|consen 108 RVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLR---LCS-------SDLPDELLYGRAGYLWACLFLNKYIGQE 177 (403)
T ss_pred ceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcc---cCC-------ccccHHHHhhHHHHHHHHHHHHhhcCCC
Confidence 799999999999999999999999999999888887764 112 4467999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHcchhccccC-CCCCCcceeeccccCCCCcchHHHHHHHhcCCC---ChHHHHHHHHHHHHHHhc
Q 014060 205 TLPNELLMPIVDAVLAGGRAGATAN-TACPLMYRWHGTRYWGAANGLAGILQVLLHFPL---SEEDAEDVKGTLRYMMSN 280 (431)
Q Consensus 205 ~~~~~~i~~~~~~il~~~~~~~~~~-~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~~---~~~~~~~i~~~l~~~~~~ 280 (431)
++.++.|+++++.|++.++.+++++ .+||+|+.|++++|.|.|||.+||++.|+.-.. .+...++++.+++|+++.
T Consensus 178 ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~ 257 (403)
T KOG2787|consen 178 TIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQN 257 (403)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHc
Confidence 9888999999999999999887764 468999999999999999999999999997542 455688999999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCCCCC-CccccchhhHHHHH
Q 014060 281 RFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKK-VGLADGAAGNAYAF 359 (431)
Q Consensus 281 ~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~LCHG~aG~~~~L 359 (431)
++| .||+|.+.+++.+..+.||||+||+++.|.+++++|+ .++|++.+.++++.+|++|++++ +|+|||++||+|+|
T Consensus 258 rfp-sGNyP~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~-Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvF 335 (403)
T KOG2787|consen 258 RFP-SGNYPSSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFK-EEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVF 335 (403)
T ss_pred cCC-CCCCCcccCCCcceeeeeccCCchHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhh
Confidence 998 9999999988888899999999999999999999999 99999999999999999999977 99999999999999
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchHHHHHHHHHccCcccCCCCCCCC
Q 014060 360 LSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYEL 431 (431)
Q Consensus 360 l~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~~~~~~~~~~ 431 (431)
|.+|+.|+|.+|++||++|++++++...+ -+.+.+|.|+|||+|+||.+|+|+++..|++++||+|||
T Consensus 336 LsLyRLT~d~kYlyRA~kFae~lld~~~~----~g~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El 403 (403)
T KOG2787|consen 336 LSLYRLTGDMKYLYRAKKFAEWLLDYGFS----HGCRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL 403 (403)
T ss_pred HhHHHHcCcHHHHHHHHHHHHHHHhhhhh----ccCCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence 99999999999999999999999998642 244678999999999999999999999999999999997
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=3.2e-53 Score=418.43 Aligned_cols=333 Identities=48% Similarity=0.853 Sum_probs=276.7
Q ss_pred ccccHHHHHHHHHHHhh----hCCHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHcCCcchHHHHHH
Q 014060 82 YTGLLGTAFICLRSYEL----TGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLN 157 (431)
Q Consensus 82 Y~G~~Gial~l~~L~~~----t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~ 157 (431)
|+|.+||+|||.+++++ +++++|.+.+.+.++.+...+.. ....++++|.+|+++++..+++.++|+++.+.+.+
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~-~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~ 79 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPD-DRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLS 79 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhccc-ccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 79999999999999999 99999999999999887766543 45689999999998887888888999888888888
Q ss_pred HHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccC-CCCCCcc
Q 014060 158 LFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATAN-TACPLMY 236 (431)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~-~~~~~~~ 236 (431)
.+.++..+ .++.. .+..+|+++|.||++++|+.+++.++++....+.+.++++.+++.++...... ...+.+|
T Consensus 80 ~~~~~~~~-~~~~~-----~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~ 153 (343)
T cd04794 80 KFLQLLES-VVSPD-----SGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMY 153 (343)
T ss_pred HHHHHHHH-Hhhcc-----cCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Confidence 77766521 12110 22457999999999999999999987544446788888888888765433211 1123456
Q ss_pred eeeccccCCCCcchHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CCcccccccCchHHHHH
Q 014060 237 RWHGTRYWGAANGLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNP-RDKLVQWSHGATGVAIT 312 (431)
Q Consensus 237 ~w~~~~~~G~aHG~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~-~~~~~~WChG~~Gi~~~ 312 (431)
.|.+..++|||||++||+++|+++. .++++.+.++++++++.+.+.+ +|+||+.++.. .+..++||||+|||+++
T Consensus 154 ~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-~g~w~~~~~~~~~~~~~~wChG~~Gi~~~ 232 (343)
T cd04794 154 EWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFP-SGNFPSSLGNRKRDRLVQWCHGAPGIVYL 232 (343)
T ss_pred cccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhcc-CCCCCCccCCCCCCccccccCCCchHHHH
Confidence 6777788999999999999998765 4678899999999999987544 78999877432 34467999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHcCCCC-CCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhhhhc
Q 014060 313 LCKASQVFPSDREFRDAAIEAGEVLWKNGLVK-KVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVT 391 (431)
Q Consensus 313 l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~ 391 (431)
++.++++++ ++++.+.+.++.+.+|+.|+.. ++|||||++||+++|+++|+.|++++|+++|.++++.++++....
T Consensus 233 l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 309 (343)
T cd04794 233 LAKAYLVFK-EEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINYGFKN-- 309 (343)
T ss_pred HHHHHHHhC-CHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcchhhh--
Confidence 999999999 9999999999999999999876 489999999999999999999999999999999999998874421
Q ss_pred cCCCCCCCCCcccccchHHHHHHHHHccCcccCCCC
Q 014060 392 SGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFP 427 (431)
Q Consensus 392 ~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~~~~~~ 427 (431)
+.+.++.++|||+|+|||+|+|+|+.+|+.+.||
T Consensus 310 --~~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f~ 343 (343)
T cd04794 310 --GARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343 (343)
T ss_pred --ccCCCCCCchhhccHHhHHHHHHHHcCcccccCC
Confidence 2345678999999999999999999999999998
No 3
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=100.00 E-value=5.8e-47 Score=375.71 Aligned_cols=345 Identities=23% Similarity=0.364 Sum_probs=250.7
Q ss_pred CCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCC-cccccccchHHHHHHHHHHHHcCCcchHHH
Q 014060 76 GMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTR-HVTFLCGRGGIYAIGAVVANRMGDRSRRDF 154 (431)
Q Consensus 76 ~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~-~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~ 154 (431)
+++.+||+|.+||++||.++++.+++++|.+.++++++.+...+..... ..|+|+|.+|++.++..+++..++....+.
T Consensus 2 ~~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~ 81 (355)
T PF05147_consen 2 PLDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSGLAGIAYALSYLSKRLGDEKYIEE 81 (355)
T ss_dssp CCGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTSCHHHHHHHHHHCCCTCHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCChHHHHHHHHHHHHhccchHHHHH
Confidence 3678999999999999999999999999999999999998887764332 799999999997777666665554444444
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCC
Q 014060 155 FLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPL 234 (431)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~ 234 (431)
.++.+...+.+.... . ....+|+++|.||++.+++.+++.++++.++ +.+.+++++|++....... ...+.
T Consensus 82 ~l~~~~~~i~~~~~~-~-----~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~i~~~~~~l~~~~~~~~~--~~~~~ 152 (355)
T PF05147_consen 82 LLKRILNIIENSISN-D-----SNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DIIEKILEKLLESIINDDP--SENQI 152 (355)
T ss_dssp HHHHHHHCHHHHHHC-T-------GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HHHHHHHHHCCCHHCCCHT--CCGSS
T ss_pred HHHHHHHHHHHhhhh-c-----ccccchhhcccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHhhccc--ccCCC
Confidence 454444433211111 0 1112899999999999999999888765443 5666677666654433211 11233
Q ss_pred ccee-eccccCCCCcchHHHHHHHhcCC----CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC-cccccccCchH
Q 014060 235 MYRW-HGTRYWGAANGLAGILQVLLHFP----LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRD-KLVQWSHGATG 308 (431)
Q Consensus 235 ~~~w-~~~~~~G~aHG~aGI~~~L~~~~----~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~-~~~~WChG~~G 308 (431)
+..| .+..++|||||.+||+++|++++ .++++.+.++++++++.+.+.+.+++||+.+..... .+.+||||++|
T Consensus 153 ~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G~~G 232 (355)
T PF05147_consen 153 GSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYGSPG 232 (355)
T ss_dssp SHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSSHHH
T ss_pred ccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccCcHH
Confidence 4556 46678999999999999999876 257788999999999999876556779988744211 16899999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcC-CCCCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhh
Q 014060 309 VAITLCKASQVFPSDREFRDAAIEAGEVLWKNG-LVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQ 387 (431)
Q Consensus 309 i~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~ 387 (431)
|++++..+.+.++ ++.+.+.+.++.+.+++++ ...++|||||.+|++++|+.+++.++++.+.++++++...+++...
T Consensus 233 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T PF05147_consen 233 ILLALLKAYKILD-DEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLSYYD 311 (355)
T ss_dssp HHHHHHHHHHHCT--HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999 9999999999999998877 5677999999999999999999999999999999999888776644
Q ss_pred hhhccCCCCCCCCCcccccchHHHHHHHHHccCcccCCCCCCC
Q 014060 388 NLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPGYE 430 (431)
Q Consensus 388 ~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~~~~~~~~~ 430 (431)
+.....+......++|||+|.|||+++|+|+.+|++++||.+=
T Consensus 312 ~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~l 354 (355)
T PF05147_consen 312 ENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDKPNWPSIL 354 (355)
T ss_dssp C---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT-
T ss_pred ccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCCCCCCccc
Confidence 3110011233456799999999999999999999999999753
No 4
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=100.00 E-value=4.5e-44 Score=391.31 Aligned_cols=347 Identities=19% Similarity=0.216 Sum_probs=272.1
Q ss_pred hhccCCCCCCCCC--CCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhcc---CCcccccccchHH
Q 014060 61 VTWRRGSGGGGEP--GRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDS---TRHVTFLCGRGGI 135 (431)
Q Consensus 61 ~~w~~~~~~~~~~--~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~---~~~~~~~~G~~Gi 135 (431)
++|++....+++. ..+++.+||+|.+||++||+++++.|++++|.+.+.++++.+...+... ..+.|+|+|.+|+
T Consensus 467 ~~Wi~~~~~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi 546 (825)
T cd04792 467 INWIGLVLSDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGI 546 (825)
T ss_pred HhhCCCcccCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHH
Confidence 7899876333333 4569999999999999999999999999999999999999887766432 1467999999998
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHH
Q 014060 136 YAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIV 215 (431)
Q Consensus 136 ~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~ 215 (431)
++++..+++.++++++.+.+.+.+..+.. .+. .+..+|+++|.||++++|+.+++.++++.++ +.+.+++
T Consensus 547 ~~~L~~l~~~~~~~~~~~~a~~~~~~l~~--~~~-------~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l-~~a~~~~ 616 (825)
T cd04792 547 LYALTHLGKLLKDDRLLNLAKEILDLIDE--LIE-------KDEKLDFISGAAGLILVLLSLYELFLSERFL-DLALKCG 616 (825)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhc-------cccCCCEeeecHHHHHHHHHHHhccCChHHH-HHHHHHH
Confidence 77777788888888877666555554431 222 2357899999999999999999998875543 4566777
Q ss_pred HHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 014060 216 DAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSE 292 (431)
Q Consensus 216 ~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~ 292 (431)
+++++...... ...+.+....++|||||.+||+++|++++ .++++.+.+.++++++.+.+.+..++||...
T Consensus 617 ~~l~~~~~~~~------~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~ 690 (825)
T cd04792 617 DHLLENASNED------GGIGPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKD 690 (825)
T ss_pred HHHHHhhhhcc------CCcccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcC
Confidence 77666432211 00111123457999999999999998764 5788999999999999886655567898322
Q ss_pred CCCCCcccccccCchHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHHHHcCCCCCCccccchhhHHHHHHHHHHHhCCch
Q 014060 293 GNPRDKLVQWSHGATGVAITLCKASQV--FPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETI 370 (431)
Q Consensus 293 ~~~~~~~~~WChG~~Gi~~~l~~~~~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~LCHG~aG~~~~Ll~l~~~t~~~~ 370 (431)
......+||||++||+++++.+.++ .+ ++.+.+.+.++.+.+++.+...++|||||.+|++++|+.+++.+++++
T Consensus 691 --~~~~~~~WChG~~GI~lal~~~~~~~~~~-d~~~~~~i~~~~~~~~~~~~~~~~slCHG~~Gil~~ll~~~~~~~~~~ 767 (825)
T cd04792 691 --GNSFSAAWCHGAPGILLARLELLKFNDLD-DEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGDEK 767 (825)
T ss_pred --cCCCCCcccCCcHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHhcCCCCCeecCCCcchHHHHHHHHHhcCCHH
Confidence 2234578999999999999999998 77 889999999999888888866789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchHHHHHHHHHccCcccCCCCC
Q 014060 371 YVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPVNARFPG 428 (431)
Q Consensus 371 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~~~~~~~ 428 (431)
|.+.|++.+..+++...+..+..+.+....++|||+|+|||+|+|+|+.+|+. .|.
T Consensus 768 ~~~~a~~~~~~l~~~~~~~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~p~~--vps 823 (825)
T cd04792 768 LQELANSLAIKVLSQGKKNGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPDR--VPS 823 (825)
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCCCCCCCCchhhhhHHHHHHHHHhhhCCCC--CCC
Confidence 99999999998888765422233444445789999999999999999999964 553
No 5
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=100.00 E-value=9.2e-43 Score=343.42 Aligned_cols=324 Identities=31% Similarity=0.484 Sum_probs=255.3
Q ss_pred ccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccC-CcccccccchHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 014060 82 YTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDST-RHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFL 160 (431)
Q Consensus 82 Y~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~-~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~ 160 (431)
|+|.+||++||.++++.+++++|.+.+.+.++.+...+.... .+.|+|+|.+|+++++..+++.++++++++.+.+.+.
T Consensus 1 y~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~ 80 (343)
T cd04434 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLL 80 (343)
T ss_pred CCChHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999998887765422 4689999999998777788888888888877777666
Q ss_pred HHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceee-
Q 014060 161 EIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWH- 239 (431)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~- 239 (431)
.+... .... . ....+|+++|.||++++|+.+++.++++.+ .+.+.++++.+++....... .+.|.
T Consensus 81 ~~~~~-~~~~-~----~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-------~~~~~~ 146 (343)
T cd04434 81 LLVEL-ILED-L----KDLNYDLLSGLAGLLLALLLLYKTFGEEIF-LELIRKILDYLLELGKNGDG-------KIRWPM 146 (343)
T ss_pred Hhhhh-hhcc-c----CCCCcceeechHHHHHHHHHHHHhcCCcCH-HHHHHHHHHHHHHhhhhccC-------CCceee
Confidence 65421 1110 0 235789999999999999999998876554 46777888888775543211 22232
Q ss_pred ----ccccCCCCcchHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCcccccccCchHHHH
Q 014060 240 ----GTRYWGAANGLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSE-GNPRDKLVQWSHGATGVAI 311 (431)
Q Consensus 240 ----~~~~~G~aHG~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~-~~~~~~~~~WChG~~Gi~~ 311 (431)
+..++|||||.+||+++|+++. .++.+.+.++.++.++.+.+....++|++.. ........+||||++||++
T Consensus 147 ~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~ 226 (343)
T cd04434 147 YFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILL 226 (343)
T ss_pred eccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHH
Confidence 3467999999999999998764 3566677888888988887665556776522 2233456899999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHHcCC--CCCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhhh
Q 014060 312 TLCKASQVFPSDREFRDAAIEAGEVLWKNGL--VKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNL 389 (431)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~ 389 (431)
+++.+++.++ ++++.+.+.+..+.+++... ..++|||||.+|++++|+++++.+++++|.+.|.+++.+++......
T Consensus 227 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 305 (343)
T cd04434 227 ALLLAYKALG-DDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLISHANGW 305 (343)
T ss_pred HHHHHHHHcC-cHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999 99999999999988888765 35699999999999999999999999999999999988877653321
Q ss_pred hccCCCCCCCCCcccccchHHHHHHHHHccCc
Q 014060 390 VTSGHTRGADHGYSLFQGLAGTACIWFDLLEP 421 (431)
Q Consensus 390 ~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p 421 (431)
. ....+....++|||+|+|||+++|+|+.+|
T Consensus 306 ~-~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 306 L-CGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred c-ccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 1 111133457899999999999999999998
No 6
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=100.00 E-value=2.8e-43 Score=359.56 Aligned_cols=349 Identities=17% Similarity=0.220 Sum_probs=284.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHH------------hhccCCCCCC-CCCCCCCCCccccccHHHHHHHHHHHhhhCCHHH
Q 014060 38 INMSLPCETFLKAAVSLKDQVVE------------VTWRRGSGGG-GEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQE 104 (431)
Q Consensus 38 ~~~~~~~~~~l~~A~~i~~~l~~------------~~w~~~~~~~-~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~ 104 (431)
+.-..+.|.+++.|..|||+|++ .+|++..-+. .....|++.+||+|.+||++|+++|..+||...|
T Consensus 589 ~~~ti~~e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y 668 (963)
T COG4403 589 SKHTIDNEYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYY 668 (963)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHH
Confidence 33446788999999999999993 4566654221 1225679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc--CCcccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCccc
Q 014060 105 LLLSAEIIDTCASVVRDS--TRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYD 182 (431)
Q Consensus 105 ~~~a~~~l~~~~~~~~~~--~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D 182 (431)
.+.|.++++.+.+.+.+. +.+.|.|+|.+|.++.++.++..++|......+.+.+..+.. .+. .+..+|
T Consensus 669 ~~ia~~~L~~~~~sv~~~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~--~v~-------~~~~~d 739 (963)
T COG4403 669 KEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEI--LVQ-------KSKDPD 739 (963)
T ss_pred HHHHHHHHHHHHHhhhhccCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHH--HHh-------hccCcc
Confidence 999999999888877542 345799999999876677888888887777777777765542 232 235699
Q ss_pred ccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHHHhcCC-
Q 014060 183 LLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP- 261 (431)
Q Consensus 183 ~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~- 261 (431)
++.|.||++.+|+.+|+.+.+++++ +.+....+++++..... -+|. +..+||+||++||+++|+.++
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l-~~ais~~~~l~~~~v~~----------d~s~-~~l~gfshg~sgi~~tL~~ly~ 807 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFL-ELAISLGRILMEKIVGN----------DSSE-TVLLGFSHGASGIILTLLKLYE 807 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHhhcc----------cccc-ceecccccchHHHHHHHHHHHH
Confidence 9999999999999999998887664 45555666666543221 1143 668999999999999999865
Q ss_pred --CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 014060 262 --LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWK 339 (431)
Q Consensus 262 --~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~ 339 (431)
.++.+++.+++.+.++++.+.. + ...||||+|||+++|+...+.+. |+...+++..+..++..
T Consensus 808 ~T~e~~l~~~i~e~~~~Er~~f~~---~-----------~~~Wc~g~~gilv~rl~l~~~~~-de~i~~Ei~~~l~~~i~ 872 (963)
T COG4403 808 ATGEESLLKKIKELLSYERMKFSD---K-----------FTRWCSGAPGILVSRLLLKKIYD-DESIDREIQQALKTIIN 872 (963)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHH---H-----------HHHHhcCCcceeechhhhhhhcc-hHHHHHHHHHHHHHHHh
Confidence 5788899999999999986542 1 26799999999999999999998 99999999999999999
Q ss_pred cCCCCCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchHHHHHHHHHcc
Q 014060 340 NGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLL 419 (431)
Q Consensus 340 ~g~~~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~ 419 (431)
.|+. +.++|||.+|+..+|+..++.+++++..+.|...+..+++++.+.....+.+.+.+++|||+|++||||.|||..
T Consensus 873 ~glg-n~~~Chgdfg~ie~l~~~a~~l~~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~glm~GvtGigY~lLR~~ 951 (963)
T COG4403 873 NGLG-NDSLCHGDFGIIEVLLHYAKILSDSELLESANKLANELVSKAITYGINQGLNHANESFGLMNGVTGIGYSLLRIS 951 (963)
T ss_pred ccCC-CccccccchHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhccccccccCCCccchhHHHhhhHHHHHHHHHHh
Confidence 9987 999999999999999999999999999999999998888876553333345566788999999999999999999
Q ss_pred Cccc
Q 014060 420 EPVN 423 (431)
Q Consensus 420 ~p~~ 423 (431)
.|+.
T Consensus 952 ~p~~ 955 (963)
T COG4403 952 SPKF 955 (963)
T ss_pred Cccc
Confidence 9954
No 7
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=100.00 E-value=5.8e-43 Score=350.54 Aligned_cols=336 Identities=16% Similarity=0.163 Sum_probs=235.4
Q ss_pred ccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHH-HcCCcchHHHHHHHHH
Q 014060 82 YTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVAN-RMGDRSRRDFFLNLFL 160 (431)
Q Consensus 82 Y~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G~~Gi~~l~~~~~~-~~~d~~~~~~~~~~~~ 160 (431)
|+|.+||+|||++|+++|++++|.+.|+++++.+.+.+++.....|+|+|.+|+...+..+++ ...+++.++.+.+.+.
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSLGYSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIK 80 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999888776433468999999998655555544 2233443333333332
Q ss_pred HHHHhccCCC-CCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCC---CCCCcc
Q 014060 161 EIAQERALPA-GPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANT---ACPLMY 236 (431)
Q Consensus 161 ~~~~~~~l~~-~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~---~~~~~~ 236 (431)
.+... .+.. .......+..+|+++|.||++.+|+.+++. +... ...+.++++.+++.......... ......
T Consensus 81 ~l~~~-~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~~~--~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (382)
T cd04793 81 AIVRR-RLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRHEP--DSEL-LREILDYLVYLTEPLNQDITLYIWSENQPSET 156 (382)
T ss_pred HHHHH-HHHHHhcCCCCCCCCCceeechHHHHHHHHhccCc--chhH-HHHHHHHHHHHHHHHhcCCCCccCcCcCCCcc
Confidence 22110 1100 000000346799999999999999988721 1111 23455555555553221100000 000000
Q ss_pred ee----eccccCCCCcchHHHHHHHhcCC----CChHHHHHHHHHHHHHHhccCC-CCCCCCCCC-C----------CCC
Q 014060 237 RW----HGTRYWGAANGLAGILQVLLHFP----LSEEDAEDVKGTLRYMMSNRFP-QSGNYPVSE-G----------NPR 296 (431)
Q Consensus 237 ~w----~~~~~~G~aHG~aGI~~~L~~~~----~~~~~~~~i~~~l~~~~~~~~~-~~gnw~~~~-~----------~~~ 296 (431)
.+ .+..++|||||++||+++|++++ .++++.+.++++++|+.+.+.+ ..++|++.+ . ...
T Consensus 157 ~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 236 (382)
T cd04793 157 ESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPN 236 (382)
T ss_pred ccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCC
Confidence 11 12357899999999999988653 4678899999999999887654 345876543 1 112
Q ss_pred CcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCC----CCCCccccchhhHHHHHHHHHHHhCCchHH
Q 014060 297 DKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGL----VKKVGLADGAAGNAYAFLSLYRLTGETIYV 372 (431)
Q Consensus 297 ~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~ 372 (431)
..+.+||||+|||+++++.+++.++ ++.+.+.+.++.+.+++... ..++|||||.+|++++|+++++.|++++|.
T Consensus 237 ~~~~~wChG~~Gi~~~l~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~ 315 (382)
T cd04793 237 PFRDAWCYGTPGIARALQLAGKALD-DQKLQEAAEKILKAALKDKKQLSKLISPTLCHGLAGLLFIFYLLYKDTNTNEFK 315 (382)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhChhhhccCCCCCcCccHHHHHHHHHHHHHHhCCcHHH
Confidence 2357999999999999999999999 99999999999887775432 246999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccC--------CCCCCCCCcccccchHHHHHHHHHccCcc
Q 014060 373 ERANAFSSFLYHNAQNLVTSG--------HTRGADHGYSLFQGLAGTACIWFDLLEPV 422 (431)
Q Consensus 373 ~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~ 422 (431)
++|+++++.++++..+....+ +......++|||+|.|||+++|+|+.+|+
T Consensus 316 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~l~LL~~~~~~ 373 (382)
T cd04793 316 SALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEGAAGIALTLLSYYNGE 373 (382)
T ss_pred HHHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecCHHHHHHHHHHhhhCC
Confidence 999999998888654311110 01224467999999999999999999987
No 8
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=100.00 E-value=5e-39 Score=314.82 Aligned_cols=314 Identities=20% Similarity=0.215 Sum_probs=227.7
Q ss_pred ccccHHHHHHHHHHH-hhhCCHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 014060 82 YTGLLGTAFICLRSY-ELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFL 160 (431)
Q Consensus 82 Y~G~~Gial~l~~L~-~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~ 160 (431)
|+|.+||++|+.+++ .. +.+.+.+.++....... ....+|+|+|.+|++.++.. .+..+..+.+++.+.
T Consensus 1 ~~G~aGi~~~l~~~~~~~-----~~~~~~~~i~~~~~~~~-~~~~~gl~~G~~Gi~~~l~~----~~~~~~~~~~~~~~~ 70 (321)
T cd04791 1 AHGAAGVLMALLRSGFGD-----YAENALDWIEEAATREL-SGSPPGLYDGRAGIAWVLIE----LGHPARAKALFDTLL 70 (321)
T ss_pred CchHHHHHHHHHHhcCCC-----CCchHHHHHHHHhhccC-CCCCCccccChhhHHHHHHH----cCCHHHHHHHHHHHh
Confidence 789999999999987 22 22223344433332211 12457999999998655443 243333333332221
Q ss_pred HHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeec
Q 014060 161 EIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHG 240 (431)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~ 240 (431)
+ ... .+.+.|+++|.||++++++.+++. ++++++ +.++++++++++...+.. ....|...+
T Consensus 71 ~-----~~~-------~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l-~~a~~~~~~l~~~~~~~~-----~~~~~~~~~ 131 (321)
T cd04791 71 D-----EPS-------ANLNIDLASGLAGIGLALLYFART-GDPALL-EAAAKIAELLAEALERGD-----PALLWPDFD 131 (321)
T ss_pred c-----ccc-------cccCCccccchHHHHHHHHHHHhc-CChHHH-HHHHHHHHHHHHHhhccc-----cccccccCC
Confidence 1 111 235789999999999999999999 876553 567777777766543211 011121223
Q ss_pred cccCCCCcchHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHH
Q 014060 241 TRYWGAANGLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKAS 317 (431)
Q Consensus 241 ~~~~G~aHG~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~ 317 (431)
..+.||+||.|||+++|++++ .++++++.++++++++++.+.+..++|....+ ......+||||++|++++++.++
T Consensus 132 ~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~wchG~aGi~~~l~~l~ 210 (321)
T cd04791 132 RVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDE-GARLLPYLCSGSAGLGLLMLRLE 210 (321)
T ss_pred CCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCC-CCccCcccCCCcHHHHHHHHHHH
Confidence 457999999999999998765 57899999999999998877655667755332 22345789999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHcCCCCCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 014060 318 QVFPSDREFRDAAIEAGEVLWKNGLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRG 397 (431)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 397 (431)
++++ ++++.+.++++.+.+++.. ..++|||||.+|++.+|+.+++.++++.|.+.+.+++.++++........ -++.
T Consensus 211 ~~~~-d~~~~~~a~~~~~~~~~~~-~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 287 (321)
T cd04791 211 AITG-DKRWRDEADGIAHAALSSC-YANPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIATADEIEGP-VFPG 287 (321)
T ss_pred HhcC-CHHHHHHHHHHHHHHhhhh-ccCccccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccccCCcccc-ccCC
Confidence 9999 9999999999998887664 45799999999999999999999999999999999999988764321100 0111
Q ss_pred ---CCCCcccccchHHHHHHHHHccCcccCCCCC
Q 014060 398 ---ADHGYSLFQGLAGTACIWFDLLEPVNARFPG 428 (431)
Q Consensus 398 ---~~~~~gl~~G~aGI~~~Ll~l~~p~~~~~~~ 428 (431)
...++|||+|.|||+++|+|+.++....||.
T Consensus 288 ~~~~~~~~gl~~G~aGi~~~ll~l~~~~~~~~p~ 321 (321)
T cd04791 288 DQGLRISTDLATGTAGILLFLLRLLTRARSWLPF 321 (321)
T ss_pred ccceeeccccccchHHHHHHHHHHhcCCcccCCC
Confidence 1356899999999999999999987777883
No 9
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.94 E-value=2.2e-25 Score=219.54 Aligned_cols=289 Identities=20% Similarity=0.177 Sum_probs=198.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhc--
Q 014060 44 CETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-- 121 (431)
Q Consensus 44 ~~~~l~~A~~i~~~l~~~~w~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~-- 121 (431)
++++.+.+....+.+....-... ..+.++|+|.+|+++++.++++.++++++.+.+.+.+..+.+....
T Consensus 20 ~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (343)
T cd04434 20 DEKYQDLAHKALEYIVKSLSSLP---------DTDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDL 90 (343)
T ss_pred CccHHHHHHHHHHHHHHHHHhCC---------CCCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhccc
Confidence 45677777777777776421110 0457999999999999999999999999999999988887765431
Q ss_pred cCCcccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCC--CCC----CCCCCCcccccccchHHHHHHH
Q 014060 122 STRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPA--GPE----EGGFGMSYDLLYGRAGFLWAAL 195 (431)
Q Consensus 122 ~~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~--~~~----~~~~~~~~D~l~G~aG~i~~Ll 195 (431)
.....++++|.+|++.++..+++.++++.+.+.+.+....+... ..+. ... ........++.+|.+|++++|+
T Consensus 91 ~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~~HG~~Gi~~~l~ 169 (343)
T cd04434 91 KDLNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLEL-GKNGDGKIRWPMYFPEGRVNLGLAHGLAGILLALL 169 (343)
T ss_pred CCCCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHh-hhhccCCCceeeeccCCccccchhhhhHHHHHHHH
Confidence 24568999999998777777788777776665555444444321 1110 000 0001245689999999999999
Q ss_pred HHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceee-------ccccCCCCcchHHHHHHHhcCC---CChH
Q 014060 196 FVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWH-------GTRYWGAANGLAGILQVLLHFP---LSEE 265 (431)
Q Consensus 196 ~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~-------~~~~~G~aHG~aGI~~~L~~~~---~~~~ 265 (431)
.+++.+.++ .++.+++.++......... ..+.|. .....+||||.+||+.+|+++. .++.
T Consensus 170 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~ 239 (343)
T cd04434 170 LLYKKTVDK-----SLEALIKALLKYERRLQDD-----SGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDK 239 (343)
T ss_pred HHHHhcCCh-----hHHHHHHHHHHHHHHccCC-----CCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHH
Confidence 999998542 2333333333322222111 111121 2346899999999999988764 4567
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHc--C--
Q 014060 266 DAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKN--G-- 341 (431)
Q Consensus 266 ~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--g-- 341 (431)
+.+.+++.++...+.... . + ...+||||.+|++.+++.+++.++ ++++.+.+.+....+... +
T Consensus 240 ~~~~~~~~~~~~~~~~~~-~--~---------~~~~lChG~~G~~~~ll~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 306 (343)
T cd04434 240 YDEAAEKALELAWKRGLL-E--L---------KNPGLCHGIAGNLLILLLLYKLTG-DLKFLARALALALLLISHANGWL 306 (343)
T ss_pred HHHHHHHHHHHHHHhhhc-c--C---------CCCCcCcCccchHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhhc
Confidence 777888777776653221 1 1 137899999999999999999999 999999888877554321 1
Q ss_pred ------CCCCCccccchhhHHHHHHHHHHH
Q 014060 342 ------LVKKVGLADGAAGNAYAFLSLYRL 365 (431)
Q Consensus 342 ------~~~~~~LCHG~aG~~~~Ll~l~~~ 365 (431)
...+++||+|.+|+++.|+++.+.
T Consensus 307 ~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 307 CGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred ccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 123589999999999999988754
No 10
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.93 E-value=5.1e-25 Score=217.55 Aligned_cols=261 Identities=18% Similarity=0.159 Sum_probs=180.0
Q ss_pred cccchHHHHHHHHHHHH----cCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCC
Q 014060 129 LCGRGGIYAIGAVVANR----MGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAG 204 (431)
Q Consensus 129 ~~G~~Gi~~l~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~ 204 (431)
|+|.+|+.+++..+++. ++++++++.+.+.+.... ..++ .+...|++.|.+|++++++.+++.++++
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~--~~~~-------~~~~~~~~~G~aGi~~~l~~l~~~~~d~ 71 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASL--RAIP-------DDRRISFLCGNAGVYAVGAAVYHYLKDE 71 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHH--hhcc-------cccCCCccCCcHHHHHHHHHHHHHhcCh
Confidence 68999987776778888 888888887777666554 2233 2356899999999999999999998885
Q ss_pred CCchhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHHHhcCC---C-ChHH----HHHHHHHHHH
Q 014060 205 TLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP---L-SEED----AEDVKGTLRY 276 (431)
Q Consensus 205 ~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~---~-~~~~----~~~i~~~l~~ 276 (431)
++.+ .+.+.++++++......+ + ....+-||.||++++|+.++ . .+.. .+.++..+++
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~----------~---~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~ 137 (343)
T cd04794 72 DEVD-EFLSKFLQLLESVVSPDS----------G---LPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILES 137 (343)
T ss_pred HHHH-HHHHHHHHHHHHHhhccc----------C---CchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHH
Confidence 4432 333344444432111000 0 12467799999999998753 1 1112 2334444555
Q ss_pred HHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHc----CCC---------
Q 014060 277 MMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKN----GLV--------- 343 (431)
Q Consensus 277 ~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----g~~--------- 343 (431)
..+.......+||...........+||||++||+.+++.+.+.++ ++++.+.+.++.+.+.+. |..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~ 216 (343)
T cd04794 138 GRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLL-KPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKR 216 (343)
T ss_pred HHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcC-CccHHHHHHHHHHHHHHhhccCCCCCCccCCCCC
Confidence 443322222356543322223357999999999999999999888 999999999888765433 321
Q ss_pred -CCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchHHHHHHHHHccCcc
Q 014060 344 -KKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLEPV 422 (431)
Q Consensus 344 -~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~p~ 422 (431)
...++|||.+|++.+++.+++.++++++.+.+++.++.+... ++ ....+|||+|++|+++.|+++..+.
T Consensus 217 ~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~--~~~~~~lCHG~~G~~~~lL~~~~~~ 286 (343)
T cd04794 217 DRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKR--------GL--LKKGPGLCHGIAGNAYAFLLLYRLT 286 (343)
T ss_pred CccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--------CC--ccCCCccccCccchHHHHHHHHHHh
Confidence 125799999999999999999999999999888777654322 11 1235799999999999999987764
Q ss_pred c
Q 014060 423 N 423 (431)
Q Consensus 423 ~ 423 (431)
+
T Consensus 287 ~ 287 (343)
T cd04794 287 G 287 (343)
T ss_pred C
Confidence 3
No 11
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.93 E-value=3e-24 Score=235.30 Aligned_cols=288 Identities=19% Similarity=0.211 Sum_probs=201.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhcc
Q 014060 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDS 122 (431)
Q Consensus 43 ~~~~~l~~A~~i~~~l~~~~w~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~ 122 (431)
.+++|.+.|.++.+.+....-.... ...+.|+|+|.+|+++++.++++.++++.|.+.+.+.++.+......
T Consensus 508 ~~~~~~~~a~~~l~~l~~~~~~~~~-------~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~- 579 (825)
T cd04792 508 GDERYTRLARKILDSLVKSLSELKT-------DDTGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIEK- 579 (825)
T ss_pred CChHHHHHHHHHHHHHHHHHhcccc-------cccCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcc-
Confidence 4567888888888887764311110 01467999999999999999999999999999998888876654432
Q ss_pred CCcccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCC--CCCCCCCcccccccchHHHHHHHHHhhh
Q 014060 123 TRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGP--EEGGFGMSYDLLYGRAGFLWAALFVNKH 200 (431)
Q Consensus 123 ~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~D~l~G~aG~i~~Ll~l~~~ 200 (431)
....++++|.+|++.++..+++.++++.+.+.+.+.+..+... ...... .........++.+|.||++++|+.+++.
T Consensus 580 ~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~-~~~~~~~~~~~~~~~~~G~aHG~sGi~~aL~~l~~~ 658 (825)
T cd04792 580 DEKLDFISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLEN-ASNEDGGIGPAEQPNLTGFAHGASGIAWALLRLYKV 658 (825)
T ss_pred ccCCCEeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHh-hhhccCCcccccccccccccccHHHHHHHHHHHHHH
Confidence 3568999999998777677888888888777766666655421 111000 0000123578999999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeec----cccCCCCcchHHHHHHHhcCC-----CChHHHHHHH
Q 014060 201 LGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHG----TRYWGAANGLAGILQVLLHFP-----LSEEDAEDVK 271 (431)
Q Consensus 201 ~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~----~~~~G~aHG~aGI~~~L~~~~-----~~~~~~~~i~ 271 (431)
++++.+ .+.+..+++..+.... +..+.|.. ....+||||.+||+.+++++. .++.+.+.+.
T Consensus 659 ~~d~~~-----~~~a~~~l~~~~~~~~-----~~~~~w~~~~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~ 728 (825)
T cd04792 659 TGDSRY-----LKLAHKALKYERRLFS-----EEGWNWPRKDGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIE 728 (825)
T ss_pred cCcHHH-----HHHHHHHHHHHHHhcC-----HhhcCCCCcCcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 987432 2333333332222111 11234531 236899999999999887643 3455677788
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH--------HcCCC
Q 014060 272 GTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLW--------KNGLV 343 (431)
Q Consensus 272 ~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~--------~~g~~ 343 (431)
++++.+.+.. .+ ...+||||.+|++.+++.+++.++ ++++.+.+.+.+..+. ..|..
T Consensus 729 ~~~~~~~~~~-----~~---------~~~slCHG~~Gil~~ll~~~~~~~-~~~~~~~a~~~~~~l~~~~~~~~~~~g~~ 793 (825)
T cd04792 729 IALKTTLKEG-----FG---------NNHSLCHGDLGNLEILLYAAKAFG-DEKLQELANSLAIKVLSQGKKNGWLCGLP 793 (825)
T ss_pred HHHHHHHHhc-----CC---------CCCeecCCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 8888776532 11 126799999999999999999999 9999988888765542 22222
Q ss_pred ---CCCccccchhhHHHHHHHHHH
Q 014060 344 ---KKVGLADGAAGNAYAFLSLYR 364 (431)
Q Consensus 344 ---~~~~LCHG~aG~~~~Ll~l~~ 364 (431)
.++|||+|.+|+++.|++++.
T Consensus 794 ~~~~~~glm~G~aGIgy~LLrl~~ 817 (825)
T cd04792 794 RGFESPGLMTGLAGIGYGLLRLAA 817 (825)
T ss_pred CCCCCchhhhhHHHHHHHHHhhhC
Confidence 348999999999999998875
No 12
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.92 E-value=2e-23 Score=204.46 Aligned_cols=254 Identities=19% Similarity=0.116 Sum_probs=176.4
Q ss_pred CCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHcCCcchHHHHH
Q 014060 77 MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFL 156 (431)
Q Consensus 77 ~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~ 156 (431)
.+.|+|+|.+||++++.++++. +.+.+.++.+.+.... ..+.++++|.+|+..++..+++. +++++.+.+.
T Consensus 38 ~~~gl~~G~~Gi~~~l~~~~~~-------~~~~~~~~~~~~~~~~-~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l~~a~ 108 (321)
T cd04791 38 SPPGLYDGRAGIAWVLIELGHP-------ARAKALFDTLLDEPSA-NLNIDLASGLAGIGLALLYFART-GDPALLEAAA 108 (321)
T ss_pred CCCccccChhhHHHHHHHcCCH-------HHHHHHHHHHhccccc-ccCCccccchHHHHHHHHHHHhc-CChHHHHHHH
Confidence 4679999999999999987543 2344444444333222 35689999999987777778888 8888887666
Q ss_pred HHHHHHHHhccCC--CCCCC-CCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCC
Q 014060 157 NLFLEIAQERALP--AGPEE-GGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACP 233 (431)
Q Consensus 157 ~~~~~~~~~~~l~--~~~~~-~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~ 233 (431)
+..+.+... ..+ ..... .......++.+|.||++++|+.+++.+++++++ +.++++++++++.... . +
T Consensus 109 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l-~~A~~~~~~~~~~~~~---~----~ 179 (321)
T cd04791 109 KIAELLAEA-LERGDPALLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYL-ELAEEALDKELARAVV---D----D 179 (321)
T ss_pred HHHHHHHHH-hhccccccccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHhhcc---C----C
Confidence 655555421 111 00000 001234688999999999999999999986543 3444555444332211 0 1
Q ss_pred Ccceee---ccccCCCCcchHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCch
Q 014060 234 LMYRWH---GTRYWGAANGLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGAT 307 (431)
Q Consensus 234 ~~~~w~---~~~~~G~aHG~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~ 307 (431)
..|.|. +....+||||.+||+.+|+++. .++++.+.++++++...+.. |. ..+||||.+
T Consensus 180 ~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~------~~---------~~~lchG~~ 244 (321)
T cd04791 180 GGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC------YA---------NPGLFSGTA 244 (321)
T ss_pred CCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh------cc---------CccccCCcH
Confidence 123232 2246789999999999988754 57788888988888876532 21 268999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcC----------C---CCCCccccchhhHHHHHHHHHH
Q 014060 308 GVAITLCKASQVFPSDREFRDAAIEAGEVLWKNG----------L---VKKVGLADGAAGNAYAFLSLYR 364 (431)
Q Consensus 308 Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g----------~---~~~~~LCHG~aG~~~~Ll~l~~ 364 (431)
|++.++..+.+.++ ++++.+.+.+..+.+.... . ..+++||+|.+|++++|+++.+
T Consensus 245 G~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~ 313 (321)
T cd04791 245 GLGAHLNDLAAEGD-NALYKAAAERLALYLIATADEIEGPVFPGDQGLRISTDLATGTAGILLFLLRLLT 313 (321)
T ss_pred hHHHHHHhhccccc-ChHHHHHHHHHHHHhccccCCccccccCCccceeeccccccchHHHHHHHHHHhc
Confidence 99999999999999 9999999999887764321 0 1238999999999999999875
No 13
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.87 E-value=1.5e-20 Score=188.51 Aligned_cols=271 Identities=18% Similarity=0.097 Sum_probs=172.0
Q ss_pred cccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhh-hhCCCCCc
Q 014060 129 LCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNK-HLGAGTLP 207 (431)
Q Consensus 129 ~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~-~~~~~~~~ 207 (431)
++|.+||.+++..+++.++++++.+.+.+.+..+.. .++.. . ...++.+|.+|+++++..+.+ ...++.+
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~--~l~~~-----~-~~~s~f~G~~Gi~~al~~~~~~~~~~~~~- 71 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALN--YLLSL-----G-YSSSLFSGAAGVAFALLILSDNGKRYQEL- 71 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH--HHHhC-----C-CCCcccccHHHHHHHHHHHccCcHhHHHH-
Confidence 478999988878888888888887766665555442 22211 1 256788999999999998887 2222211
Q ss_pred hhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHHHhcCC-CChHHHHHHHHHHHHHHhccCC-CC
Q 014060 208 NELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP-LSEEDAEDVKGTLRYMMSNRFP-QS 285 (431)
Q Consensus 208 ~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~-~~~~~~~~i~~~l~~~~~~~~~-~~ 285 (431)
.+.+.+.+..+++......+. .+. ......+++||.|||+..|++.+ .+++....+.+.++.+.+.... ..
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~---~~~----~~~~~yD~i~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (382)
T cd04793 72 LESLDELIKAIVRRRLEDAKS---GEP----PTPTNYDVISGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDIT 144 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCC----CCCCCCceeechHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCC
Confidence 112333333332211110000 000 01124689999999999998876 4444445566656655443211 01
Q ss_pred CCCCCCC---CC------CCCcccccccCchHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHH----c-----------
Q 014060 286 GNYPVSE---GN------PRDKLVQWSHGATGVAITLCKASQVF-PSDREFRDAAIEAGEVLWK----N----------- 340 (431)
Q Consensus 286 gnw~~~~---~~------~~~~~~~WChG~~Gi~~~l~~~~~~~-~~~~~~~~~a~~~~~~~~~----~----------- 340 (431)
..|+... .. ......+||||.+||+..|..+++.. . ++.+.+.+.++.+.+.+ .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~ 223 (382)
T cd04793 145 LYIWSENQPSETESKEFPEGHINLGLAHGIAGPLALLALAKERGIR-VDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLIT 223 (382)
T ss_pred CccCcCcCCCccccccCCCccccccchhcchHHHHHHHHHHHcCCC-cCChHHHHHHHHHHHHHHHHhCCCCCCCccccc
Confidence 2343321 00 11224689999999999999888877 6 77788877776543211 0
Q ss_pred -----------CCCCCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchH
Q 014060 341 -----------GLVKKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLA 409 (431)
Q Consensus 341 -----------g~~~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~a 409 (431)
.....+++|||.+|++.+++.+++.++++.+.+.+.+....+...... . ....+++||+|.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~~~~lChG~~ 296 (382)
T cd04793 224 NREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ---L----SKLISPTLCHGLA 296 (382)
T ss_pred HHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh---h----ccCCCCCcCccHH
Confidence 000137899999999999999999999999999988887766543211 0 0125679999999
Q ss_pred HHHHHHHHccCccc
Q 014060 410 GTACIWFDLLEPVN 423 (431)
Q Consensus 410 GI~~~Ll~l~~p~~ 423 (431)
|++++|+++..+..
T Consensus 297 G~~~~l~~~~~~~~ 310 (382)
T cd04793 297 GLLFIFYLLYKDTN 310 (382)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999877643
No 14
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.84 E-value=2.3e-20 Score=185.02 Aligned_cols=289 Identities=19% Similarity=0.195 Sum_probs=179.4
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHH-HHHHHHHHHHHHHhh
Q 014060 42 LPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQEL-LLSAEIIDTCASVVR 120 (431)
Q Consensus 42 ~~~~~~l~~A~~i~~~l~~~~w~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~-~~a~~~l~~~~~~~~ 120 (431)
.+++++++.+.++.+.+....-.... .+.|+|+|.+|+++++..+++.++++.+. +....+...+.+...
T Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 95 (355)
T PF05147_consen 25 TGDPKYLDLAEKLLEKLINYIENNPY---------DSIGLFSGLAGIAYALSYLSKRLGDEKYIEELLKRILNIIENSIS 95 (355)
T ss_dssp CTHHHHHHHHHHHHHHHCCCHHCC-----------S--STTTSCHHHHHHHHHHCCCTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhccC---------cCCcccCChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhh
Confidence 45667899999998888864311110 16899999999999999999988877665 344444443443332
Q ss_pred ccCCc--ccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCC----CCCC---CCCCcccccccchHHH
Q 014060 121 DSTRH--VTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAG----PEEG---GFGMSYDLLYGRAGFL 191 (431)
Q Consensus 121 ~~~~~--~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~----~~~~---~~~~~~D~l~G~aG~i 191 (431)
. ... .+++.|.+|+..++..+++.++++++++.+.+.+..+... ..... +... .......+.||.+|++
T Consensus 96 ~-~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~G~aHG~~Gi~ 173 (355)
T PF05147_consen 96 N-DSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLES-IINDDPSENQIGSEWKEGFINLGFAHGIAGIL 173 (355)
T ss_dssp C-T--GGCSTTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCH-HCCCHTCCGSSSHHCHTTBEE-STTTSHHHHH
T ss_pred h-cccccchhhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HhhcccccCCCccccCCCCccCCccccHHHHH
Confidence 2 222 8999999998766666777777777776666555554421 11100 0000 0112456789999999
Q ss_pred HHHHHHh-hhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeec---cc----cCCCCcchHHHHHHHhcCC--
Q 014060 192 WAALFVN-KHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHG---TR----YWGAANGLAGILQVLLHFP-- 261 (431)
Q Consensus 192 ~~Ll~l~-~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~---~~----~~G~aHG~aGI~~~L~~~~-- 261 (431)
++|..++ +.++++.+ .+.++++++.+.+..... ... |.+ .. ..+||||.+||+.++.++.
T Consensus 174 ~~L~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~ 243 (355)
T PF05147_consen 174 YALLRLYKKGTKDPEY-LKLIEQILNFLLKHFNTD-------DGG--WPDNRNNSNYKSRPSWCYGSPGILLALLKAYKI 243 (355)
T ss_dssp HHHCHCCHHT--HHHH-HHCHHHHHHHHHHC--TG-------CCT----SECTHHHHHC--SSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCchhH-HHHHHHHHHHHHHhcCcc-------cCC--CCCCCCccccccccccccCcHHHHHHHHHHHHh
Confidence 9999999 46654221 223444444433322110 111 431 11 5899999999999987643
Q ss_pred -CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHc
Q 014060 262 -LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKN 340 (431)
Q Consensus 262 -~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~ 340 (431)
.++.+.+.++++++...+... .+ ...+.|||.+|++..+..+++.++ ++++.+.+++..+.+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~lCHG~aG~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 309 (355)
T PF05147_consen 244 LDDEEYDEEAEQALESILQKGL----FL---------NNPSLCHGTAGILEILLDLYKYTG-DEEYKELANKLIQKLLSY 309 (355)
T ss_dssp CT-HHHHHHHHHHHHHHHHH-T----CT---------TSS-STTSHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHCTT
T ss_pred hchHHHHHHHHHHHHHHHHccc----cC---------CCCceeCchHHhHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH
Confidence 567778888887777665321 11 126899999999999999999999 888888888887666332
Q ss_pred CC-----------CCCCccccchhhHHHHHHHHHHH
Q 014060 341 GL-----------VKKVGLADGAAGNAYAFLSLYRL 365 (431)
Q Consensus 341 g~-----------~~~~~LCHG~aG~~~~Ll~l~~~ 365 (431)
.. ..+.+|+.|.+|++++|+++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~ 345 (355)
T PF05147_consen 310 YDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNP 345 (355)
T ss_dssp CCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSG
T ss_pred hhccccccCCCCCCCCCCccccHHHHHHHHHHhcCC
Confidence 21 12489999999999999877543
No 15
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.82 E-value=1.2e-18 Score=179.62 Aligned_cols=279 Identities=17% Similarity=0.267 Sum_probs=202.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhh
Q 014060 41 SLPCETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVR 120 (431)
Q Consensus 41 ~~~~~~~l~~A~~i~~~l~~~~w~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~ 120 (431)
...+..|.+.|.+..+.+.+.. . + +..|++.+.|.|.+|+.|.+..++.+++|.....-+.+.+..+.....
T Consensus 662 vtgk~~Y~~ia~~~L~~~~~sv----~--~--~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~ 733 (963)
T COG4403 662 VTGKDYYKEIAIKALQDSRKSV----N--N--NLNPINIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQ 733 (963)
T ss_pred hcChHHHHHHHHHHHHHHHHhh----h--h--ccCCcccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3456678888888777776532 1 1 233377999999999999999999999998877777777775555443
Q ss_pred ccCCcccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhh
Q 014060 121 DSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKH 200 (431)
Q Consensus 121 ~~~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~ 200 (431)
. ...+++.+|.+|++.++..+|+.+..|+.++.++...+.+.. ..+..+.. ......+.+|.||++++|+.+|+.
T Consensus 734 ~-~~~~d~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~-~~v~~d~s---~~~l~gfshg~sgi~~tL~~ly~~ 808 (963)
T COG4403 734 K-SKDPDFINGLAGVICVLVSIYKLTDEPKFLELAISLGRILME-KIVGNDSS---ETVLLGFSHGASGIILTLLKLYEA 808 (963)
T ss_pred h-ccCcchhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH-Hhhccccc---cceecccccchHHHHHHHHHHHHh
Confidence 3 455999999999877777789998888888888776666652 12222111 114577889999999999999999
Q ss_pred hCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHH-Hh--cCCCChHHHHHHHHHHHHH
Q 014060 201 LGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQV-LL--HFPLSEEDAEDVKGTLRYM 277 (431)
Q Consensus 201 ~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~-L~--~~~~~~~~~~~i~~~l~~~ 277 (431)
+++++ +.+.+..++..++.... + ..+-||||.+||+.+ |. ..+.++...+.+..++++.
T Consensus 809 T~e~~-----l~~~i~e~~~~Er~~f~------------~-~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~ 870 (963)
T COG4403 809 TGEES-----LLKKIKELLSYERMKFS------------D-KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTI 870 (963)
T ss_pred cCcHH-----HHHHHHHHHHHHHHHHH------------H-HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHH
Confidence 99842 23333344444443221 1 145679999999954 33 3334666777889999998
Q ss_pred HhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------HHcCCC---CCC
Q 014060 278 MSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVL--------WKNGLV---KKV 346 (431)
Q Consensus 278 ~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~--------~~~g~~---~~~ 346 (431)
..... || .+.|||+.|++-.++.++++++ +++..+.|.+.+..+ |..|+. .+.
T Consensus 871 i~~gl---gn------------~~~Chgdfg~ie~l~~~a~~l~-~~~l~es~~~~~~~~~~k~~~~g~~~~~~~~~~~~ 934 (963)
T COG4403 871 INNGL---GN------------DSLCHGDFGIIEVLLHYAKILS-DSELLESANKLANELVSKAITYGINQGLNHANESF 934 (963)
T ss_pred HhccC---CC------------ccccccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhccccccccCCCccchh
Confidence 87544 23 6799999999999999999999 999999998876444 333332 248
Q ss_pred ccccchhhHHHHHHHHHHHh
Q 014060 347 GLADGAAGNAYAFLSLYRLT 366 (431)
Q Consensus 347 ~LCHG~aG~~~~Ll~l~~~t 366 (431)
|||.|++|++|-||+.....
T Consensus 935 glm~GvtGigY~lLR~~~p~ 954 (963)
T COG4403 935 GLMNGVTGIGYSLLRISSPK 954 (963)
T ss_pred HHHhhhHHHHHHHHHHhCcc
Confidence 99999999999999987653
No 16
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=99.52 E-value=2e-12 Score=119.85 Aligned_cols=260 Identities=18% Similarity=0.239 Sum_probs=168.4
Q ss_pred CCcccccccchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhC
Q 014060 123 TRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLG 202 (431)
Q Consensus 123 ~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~ 202 (431)
+.+.++|+|..|+..++..+|+.++|..++..+++.+...... .. .....-|+-|.||+..+-.-+++..+
T Consensus 60 ~~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~~-~~--------s~~~vTFLCG~aGv~avgAvia~~l~ 130 (403)
T KOG2787|consen 60 VRDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLVA-SR--------SSRRVTFLCGRAGVCAVGAVIAHKLG 130 (403)
T ss_pred CcCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-cc--------ccCceEEECCCcchhHHHHHHHHHhc
Confidence 4568999999999888888999999999888888877765421 11 22457789999999888888888888
Q ss_pred CCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHHHhcCC---CChHH-HHHHHHHHHHHH
Q 014060 203 AGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFP---LSEED-AEDVKGTLRYMM 278 (431)
Q Consensus 203 ~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~---~~~~~-~~~i~~~l~~~~ 278 (431)
++..++..+.++ +.-. ...++ .| +. +=-|-+|.+|+++-+. ..... .+.|++.++.++
T Consensus 131 ~~~~~~~~l~~f----~~l~-~~~~d---lp------~E----lLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~ 192 (403)
T KOG2787|consen 131 EEEELDDCLARF----LSLR-LCSSD---LP------DE----LLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAIL 192 (403)
T ss_pred cHHHHHHHHHHH----Hhcc-cCCcc---cc------HH----HHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHH
Confidence 743333333322 2211 11111 11 11 1238999999877432 11111 223333333333
Q ss_pred hccC--CCCCCCCCCC--CCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCCC-----------
Q 014060 279 SNRF--PQSGNYPVSE--GNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLV----------- 343 (431)
Q Consensus 279 ~~~~--~~~gnw~~~~--~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~----------- 343 (431)
.... ...++=|... .=..+...+=-||.+||+..|+.-.---. ++...++++..++...+..+.
T Consensus 193 ~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d-~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~ 271 (403)
T KOG2787|consen 193 TSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVD-QPALLKDVKGSLDYMIQNRFPSGNYPSSEGNK 271 (403)
T ss_pred HHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCc-chhHHHhhhhHHHHHHHccCCCCCCCcccCCC
Confidence 2111 1123312211 00112234558999999998876332223 667788888888877655432
Q ss_pred CC--CccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhhhhhccCCCCCCCCCcccccchHHHHHHHHHccC
Q 014060 344 KK--VGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNAQNLVTSGHTRGADHGYSLFQGLAGTACIWFDLLE 420 (431)
Q Consensus 344 ~~--~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G~aGI~~~Ll~l~~ 420 (431)
++ .-+|||..|+++.|.++|+..++++|++.|.+.++-+.++.. -...+|+++|+||.+|.+|.+..
T Consensus 272 ~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl----------Lkkg~GichGvaGNaYvFLsLyR 340 (403)
T KOG2787|consen 272 RDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL----------LKKGVGICHGVAGNAYVFLSLYR 340 (403)
T ss_pred cceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh----------hhcCCcccccccCchhhhHhHHH
Confidence 11 589999999999999999999999999999999988766532 11347999999999999887754
No 17
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.98 E-value=0.08 Score=50.94 Aligned_cols=244 Identities=16% Similarity=0.068 Sum_probs=127.6
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCccccccc-chHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCCC
Q 014060 92 CLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCG-RGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERALPA 170 (431)
Q Consensus 92 l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G-~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~ 170 (431)
++++++.|+|++|++.........+..- .-..-.+.. .+|.. +..+++.++|+++++.+++....+..+.
T Consensus 45 v~~~~eAT~d~~yl~~l~~~~d~~i~~~---g~~~~~id~i~~g~~--L~~L~e~T~~~~Yl~~a~~~a~~l~~~~---- 115 (357)
T COG4225 45 VARAYEATGDAEYLDYLKTWFDEQIDEG---GLPPRNIDHIAAGLT--LLPLYEQTGDPRYLEAAIKLASWLVHEP---- 115 (357)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhhhccC---CCCccchhhhccCce--eeehhhhhCCHHHHHHHHHHHHHHhhCc----
Confidence 3578889999999998888877655421 011111222 22321 2235788999999988777666665321
Q ss_pred CCCCCC---CCCccc--ccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCc-ceeeccc--
Q 014060 171 GPEEGG---FGMSYD--LLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLM-YRWHGTR-- 242 (431)
Q Consensus 171 ~~~~~~---~~~~~D--~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~-~~w~~~~-- 242 (431)
.+.+++ ....++ ++.|.==....++++-+.++++++ +..+..+..-..+.+.+.. ..+. ..|....
T Consensus 116 Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~----~d~~~~QF~~~~~~l~Dp~--TGL~YH~wd~~~~~ 189 (357)
T COG4225 116 RTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEY----FDEALYQFSLHEKYLRDPE--TGLYYHGWDEDGTM 189 (357)
T ss_pred ccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHccCCC--cCceEEeeccCCCC
Confidence 111111 111111 123432233456777788888544 4444333323333333211 0111 1233221
Q ss_pred -----cCC----CCcchHHHHHHHhc----CCC---C-hHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccC
Q 014060 243 -----YWG----AANGLAGILQVLLH----FPL---S-EEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHG 305 (431)
Q Consensus 243 -----~~G----~aHG~aGI~~~L~~----~~~---~-~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG 305 (431)
..| ||-|++=++.+|.. +.. + .++.+.++..++-+++.|. +.|-|-...++..+...-=--|
T Consensus 190 ~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qd-e~GlW~tiLDd~~~~sy~EsSa 268 (357)
T COG4225 190 PWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQD-ESGLWHTILDDGRPGSYLESSA 268 (357)
T ss_pred ccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhc-cccchhhhhccCCCCCchhhhH
Confidence 233 44444444444432 332 1 2345667777788888776 5899977664432222233468
Q ss_pred chHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHHHH----cCCC---CCCccccchh
Q 014060 306 ATGVAITLCKASQ--VFPSDREFRDAAIEAGEVLWK----NGLV---KKVGLADGAA 353 (431)
Q Consensus 306 ~~Gi~~~l~~~~~--~~~~~~~~~~~a~~~~~~~~~----~g~~---~~~~LCHG~a 353 (431)
++|++.++++.-+ ++ ++++...++++.+.+.. .|.. +-.+.|++.+
T Consensus 269 Sa~faYallkgi~~G~l--~~~~~~~~~kA~~aLl~~i~~~g~~g~vs~~~~~~~~~ 323 (357)
T COG4225 269 SAGFAYALLKGINLGIL--DPEYAPVAEKALDALLGHIDEEGEVGGVSLGTIVGHDL 323 (357)
T ss_pred HHHHHHHHHHHHhcCCC--CchhhHHHHHHHHHHHhhcccccccceeecCccccccc
Confidence 8999999988654 23 45555666666655533 3321 2256776543
No 18
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.72 E-value=0.35 Score=47.55 Aligned_cols=237 Identities=17% Similarity=0.048 Sum_probs=120.3
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCccccccc-chHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhccC-
Q 014060 91 ICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCG-RGGIYAIGAVVANRMGDRSRRDFFLNLFLEIAQERAL- 168 (431)
Q Consensus 91 ~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G-~~Gi~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l- 168 (431)
-+..+++.|+|++|.+.+.+..+........ .. .... ..|..++ .+++.++|+++.+.+.+....++.+..-
T Consensus 33 gl~~~~~~tgd~~~~~~a~~~~~~~~~~~~~-~~---~~d~~~~g~~~~--~~y~~t~d~~y~~~~~~~a~~~l~~~~~~ 106 (336)
T PF07470_consen 33 GLLEAYEYTGDERYLDYAERWADRFIEEDGS-DY---NLDDHDIGFLLL--DLYERTGDEKYKDAAIQAADWLLARRPRT 106 (336)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHT-TT---SCCGTTHHHHHH--HHHHHH-THHHHHHHHHHHHHHHHTSCBE
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhccCC-cc---CCchhhhHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4568889999999999999988877765432 11 1111 2343222 2567889988888877777745431111
Q ss_pred CCCCCCC-CCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeecccc----
Q 014060 169 PAGPEEG-GFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRY---- 243 (431)
Q Consensus 169 ~~~~~~~-~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~---- 243 (431)
+.+.-.- .....-=++.+.-=.+..|....+.++++ .++..+++++....+.+.+...+.. ...|.....
T Consensus 107 ~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~----~~~~~a~~q~~~~~~~~~d~~tGl~-~h~~~~~~~~~~s 181 (336)
T PF07470_consen 107 SDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDP----KYLDEAVRQFRLTRKYLYDPETGLY-YHGYTYQGYADWS 181 (336)
T ss_dssp CTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGH----HHHHHHHHHHHHHHHHHB-TTTSSB-ESEEETTSSSTTS
T ss_pred CCCccccCCCCCCceeeccccccHHHHHHHHHHHCCc----HHHHHHHHHHHHHHHhccCCCCCce-eeccCCCCCcCcc
Confidence 1110000 00111123455544566777788889884 4555555555444444332211110 011211111
Q ss_pred -CCCCcchHHHHHHHhc----CCC----ChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHH
Q 014060 244 -WGAANGLAGILQVLLH----FPL----SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLC 314 (431)
Q Consensus 244 -~G~aHG~aGI~~~L~~----~~~----~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~ 314 (431)
..|+=|.+=.++.|.+ ++. .+.+++.+++.++.+.+.+. .+|-|+.......+...-===|++.++.+++
T Consensus 182 ~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~~~~~~~~~~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 182 DSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLWYQDLDDPDPGNYRETSATAMFAYGLL 260 (336)
T ss_dssp T--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEBSBTTTTTTTS-BEHHHHHHHHHHHH
T ss_pred cccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCcceecCCCCCCCcccHHHHHHHHHHHH
Confidence 1133333322222332 222 24456677888888777665 4888865542211000111124556666665
Q ss_pred HH-Hh-hCCCCHHHHHHHHHHHHHHHHc
Q 014060 315 KA-SQ-VFPSDREFRDAAIEAGEVLWKN 340 (431)
Q Consensus 315 ~~-~~-~~~~~~~~~~~a~~~~~~~~~~ 340 (431)
.. .. .++ .+++.+.++++.+.+.+.
T Consensus 261 ~gi~~g~~d-~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRLGLLD-PEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHTTSST-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCc-cHHHHHHHHHHHHHHHhC
Confidence 52 22 344 788999999998888776
No 19
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.4 Score=50.55 Aligned_cols=239 Identities=16% Similarity=0.141 Sum_probs=136.2
Q ss_pred CCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCcccccc-------cchH-HH--HHHHHHHHHcC
Q 014060 78 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLC-------GRGG-IY--AIGAVVANRMG 147 (431)
Q Consensus 78 ~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~-------G~~G-i~--~l~~~~~~~~~ 147 (431)
.--||+ .+.++.+|.+.|..|+|+.|++.+.++++.+.+.+.... .+|++ |.-| .| ..-. +...+|
T Consensus 269 EKMLyD-nA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~sp~--ggFyss~DAD~~g~EG~~Y~Ws~eE-i~~~Lg 344 (667)
T COG1331 269 EKMLYD-NALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYSPE--GGFYSSLDADSDGEEGKYYTWSVEE-LKEVLG 344 (667)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC--CceeecccccCcccCCCeeecCHHH-HHHHhc
Confidence 345777 689999999999999999999999999999888664211 11221 1122 11 1111 112222
Q ss_pred C------------------------------------cchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHH-
Q 014060 148 D------------------------------------RSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGF- 190 (431)
Q Consensus 148 d------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~- 190 (431)
+ .+.++.+.+.+...- +...+ .-...-++.+--|.
T Consensus 345 ~d~~~~~~~f~vs~~GnfeGrnvL~~~~~~~~~~~~~~~~l~~~r~kL~~~R-~~R~~-------P~~Ddkvlt~wNglm 416 (667)
T COG1331 345 EDAELACKYFDVSEEGNFEGRNVLHVPGPLEEAIEEAEEKLERAREKLLAAR-EKRKQ-------PSRDDKVLTDWNGLM 416 (667)
T ss_pred ccHHHHHHHcccCCCCCcCCceeecccCchhhhhhhhHHHHHHHHHHHHHHH-HhCCC-------CCCCcceeeccHHHH
Confidence 1 011122222222221 11121 11233456676676
Q ss_pred HHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeec--cccCCCCcchHHHHHHHhcCC---CChH
Q 014060 191 LWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHG--TRYWGAANGLAGILQVLLHFP---LSEE 265 (431)
Q Consensus 191 i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~--~~~~G~aHG~aGI~~~L~~~~---~~~~ 265 (431)
|.+|...++.++++.++ +..++.++.|.+..... .+...|.+ ..+.|+.-=.+=.+.+|+.++ .+.+
T Consensus 417 i~aLa~a~~~~~d~~~l-~~A~~~~~fi~~~l~~~-------rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~ 488 (667)
T COG1331 417 IAALAEAGRVLGDPEYL-EAAERAADFILDNLYVD-------RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLA 488 (667)
T ss_pred HHHHHHHHHHcCChHHH-HHHHHHHHHHHHhhccc-------chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHH
Confidence 55888889999987664 46677777776644321 01122332 235566555566666666554 5788
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCC--C----CC-Ccc-cccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 014060 266 DAEDVKGTLRYMMSNRFPQSGNYPVSEG--N----PR-DKL-VQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVL 337 (431)
Q Consensus 266 ~~~~i~~~l~~~~~~~~~~~gnw~~~~~--~----~~-~~~-~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~ 337 (431)
+++.+++..+-.+..+....|.|-+..+ + +. ... ..-=-|.+=+...|+.++.+++ +.+|.+.|.++++..
T Consensus 489 yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg-~~~y~e~A~~~L~a~ 567 (667)
T COG1331 489 YLEKAIELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTG-DARYLEAAEDILQAF 567 (667)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHH
Confidence 8888888777777655533344643221 0 00 000 1112234566777888999999 999999999887655
No 20
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.50 E-value=1.1 Score=44.84 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=135.6
Q ss_pred cHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccC--Ccc-ccc-ccc---hH--H------HHHHHHHHHHcCCc
Q 014060 85 LLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDST--RHV-TFL-CGR---GG--I------YAIGAVVANRMGDR 149 (431)
Q Consensus 85 ~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~--~~~-~~~-~G~---~G--i------~~l~~~~~~~~~d~ 149 (431)
.+=.++.|+.++++++++++++.|.+.++.+.+...+.. .-. .+- .|. .+ + +..+..+++.++++
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~ 134 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDP 134 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCH
Confidence 556678899999999999999999999998888654211 101 111 121 11 1 11122356788999
Q ss_pred chHHHHHHHHHHHHHhccCC-CCCCCCCCCCcccccccchHH---HHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhc
Q 014060 150 SRRDFFLNLFLEIAQERALP-AGPEEGGFGMSYDLLYGRAGF---LWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAG 225 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~D~l~G~aG~---i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~ 225 (431)
++++.+.+.+..+.+. ..+ .+.-....+.....+.+..+. +.+++.+++.++++.++ +.++++++.+.+.....
T Consensus 135 ~~l~~A~~~~~~l~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~-~~A~~l~~~~~~~~~~~ 212 (384)
T cd00249 135 EARALAEETIDLLERR-FWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYL-DRADEIADLILDRFIDA 212 (384)
T ss_pred HHHHHHHHHHHHHHHH-hccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHhcCc
Confidence 9988877777666532 111 110000000000112223333 45688888888886553 34455554444422110
Q ss_pred cccCCCCCCcc--eee----cc-ccCCCCcchHHHHHHHhcC---CCChHHHHHHHHHHHHHHhccC-CCCCCCCC-CCC
Q 014060 226 ATANTACPLMY--RWH----GT-RYWGAANGLAGILQVLLHF---PLSEEDAEDVKGTLRYMMSNRF-PQSGNYPV-SEG 293 (431)
Q Consensus 226 ~~~~~~~~~~~--~w~----~~-~~~G~aHG~aGI~~~L~~~---~~~~~~~~~i~~~l~~~~~~~~-~~~gnw~~-~~~ 293 (431)
... ...... .|. .. ..+--+|..- .++.|+++ ..++++.+.+++.+++..+... ++.|.|.. ..+
T Consensus 213 ~~G--~~~e~~~~~~~~~~~~~~~~~~Pgh~~e-~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~ 289 (384)
T cd00249 213 ESG--VVREHFDEDWNPYNGDKGRHQEPGHQFE-WAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLD 289 (384)
T ss_pred ccC--eEEEEECCCCCCCcCcCCCcCCCchHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeEC
Confidence 000 000000 010 00 1122344433 34455543 3577889999999999887664 44566755 322
Q ss_pred CC----CCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCC
Q 014060 294 NP----RDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGL 342 (431)
Q Consensus 294 ~~----~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~ 342 (431)
.. .+...-|++.-.- .+++.++++++ ++++.+.+.++.+.+++..+
T Consensus 290 ~~~~~~~~~~~~w~~~E~~--~a~~~l~~~tg-d~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 290 DGGLLEDDDKRWWPQTEAL--KAALALAGITG-DERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred CCCCcccccccccHHHHHH--HHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcC
Confidence 11 1234567754433 34455678899 99999999999888876543
No 21
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.24 E-value=0.063 Score=56.20 Aligned_cols=129 Identities=15% Similarity=0.128 Sum_probs=87.8
Q ss_pred cchHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCCCCCC---CCCC--CCCCCccc----ccccCchHHHHHHHHHHh
Q 014060 248 NGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNY---PVSE--GNPRDKLV----QWSHGATGVAITLCKASQ 318 (431)
Q Consensus 248 HG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~~gnw---~~~~--~~~~~~~~----~WChG~~Gi~~~l~~~~~ 318 (431)
|=.+|.+.++.. ..|+++++.+.+.++.+.+.|.+ +|.. +... ........ -||-| -++.+++..++
T Consensus 64 ~wl~a~a~~~~~-~~D~~l~~~~d~~V~~l~~~Q~~-dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~--~ll~gl~~~y~ 139 (520)
T PF07944_consen 64 KWLEAAAYAYAY-TGDPELKAKADEIVDELAAAQQP-DGYLGTYPEERNFNPDDRWAPDMHELYCLG--KLLEGLIDYYE 139 (520)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhccC-CceecccccccccccccCCCCCccceehHh--HHHHHHHHHHH
Confidence 545566555443 36888899999999999987764 4532 2221 00111111 34443 35566777889
Q ss_pred hCCCCHHHHHHHHHHHHHHHHc--CCCC---CCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 014060 319 VFPSDREFRDAAIEAGEVLWKN--GLVK---KVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSF 381 (431)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~--g~~~---~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~ 381 (431)
.++ +++.++.+.+.++.+.+. .+.. ...+..|-.|+.+.|.++|+.|+|++|++.|+.+.+.
T Consensus 140 ~tG-~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~ 206 (520)
T PF07944_consen 140 ATG-NERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQ 206 (520)
T ss_pred HHC-cHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999 999999999999877221 1221 1345558888889999999999999999999987764
No 22
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.68 E-value=0.14 Score=51.18 Aligned_cols=139 Identities=18% Similarity=0.122 Sum_probs=88.5
Q ss_pred CcchHHHHHHHhcC---CCChHHHHHHHHHHHHHHhccCCCC-CCCCCCCC-CCCCc-ccccccCchHHHHHHHHHHhhC
Q 014060 247 ANGLAGILQVLLHF---PLSEEDAEDVKGTLRYMMSNRFPQS-GNYPVSEG-NPRDK-LVQWSHGATGVAITLCKASQVF 320 (431)
Q Consensus 247 aHG~aGI~~~L~~~---~~~~~~~~~i~~~l~~~~~~~~~~~-gnw~~~~~-~~~~~-~~~WChG~~Gi~~~l~~~~~~~ 320 (431)
+...+=.++++..+ ..++++++.++++++++.+.....+ |.|..... +.... ...=++.-.=++.++..+++++
T Consensus 52 ~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at 131 (384)
T cd00249 52 LWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVG 131 (384)
T ss_pred EEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhc
Confidence 33444455565543 3578899999999999998655323 77744332 11110 0112444444566677889999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-----C-CC----CCCccccchhhH---HHHHHHHHHHhCCchHHHHHHHHHHHHHHhh
Q 014060 321 PSDREFRDAAIEAGEVLWKN-----G-LV----KKVGLADGAAGN---AYAFLSLYRLTGETIYVERANAFSSFLYHNA 386 (431)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~-----g-~~----~~~~LCHG~aG~---~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~ 386 (431)
+ ++++++.|+++.+.+.+. | +. .+..--.+..+. ..+++.++..|++++|+++|+++.+.+....
T Consensus 132 ~-d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~ 209 (384)
T cd00249 132 G-DPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRF 209 (384)
T ss_pred C-CHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 9 999999999998766432 2 11 000111222222 3568889999999999999999988877754
No 23
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.04 E-value=0.82 Score=44.97 Aligned_cols=205 Identities=15% Similarity=0.098 Sum_probs=106.6
Q ss_pred HHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHH-HHhcCCCChHHHH
Q 014060 190 FLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQ-VLLHFPLSEEDAE 268 (431)
Q Consensus 190 ~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~-~L~~~~~~~~~~~ 268 (431)
+..+++.+++.+++++++ +.+++.++..++.... ....-+=..|.++ .+.+...++++++
T Consensus 30 ~~~gl~~~~~~tgd~~~~-~~a~~~~~~~~~~~~~------------------~~~~d~~~~g~~~~~~y~~t~d~~y~~ 90 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYL-DYAERWADRFIEEDGS------------------DYNLDDHDIGFLLLDLYERTGDEKYKD 90 (336)
T ss_dssp HHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHT------------------TTSCCGTTHHHHHHHHHHHH-THHHHH
T ss_pred HHHHHHHHHHHHCCHHHH-HHHHHHHHHHHhccCC------------------ccCCchhhhHHHHHHHHHHhCCHHHHH
Confidence 444566888999885442 3444444444332211 0111112345543 3445556899999
Q ss_pred HHHHHHHHHHhccCC-CCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHc------C
Q 014060 269 DVKGTLRYMMSNRFP-QSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKN------G 341 (431)
Q Consensus 269 ~i~~~l~~~~~~~~~-~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~------g 341 (431)
.+.++.++++....+ .+|.+.... ......||=+..-+...+..+++.++ ++++.+.|.+-+....+. |
T Consensus 91 ~~~~~a~~~l~~~~~~~~G~~~~~~---~~~~~~wiD~~~M~~p~l~~~~~~tg-d~~~~~~a~~q~~~~~~~~~d~~tG 166 (336)
T PF07470_consen 91 AAIQAADWLLARRPRTSDGGFWHNR---PYPNQVWIDGMYMNLPFLAWAGKLTG-DPKYLDEAVRQFRLTRKYLYDPETG 166 (336)
T ss_dssp HHHHHHHHHHHTSCBECTGCBECTT---TSTTEEETTHHHHHHHHHHHHHHHHT-GHHHHHHHHHHHHHHHHHHB-TTTS
T ss_pred HHHHHHHHHHHhCCCCCCCccccCC---CCCCceeeccccccHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHhccCCCCC
Confidence 999999977754432 344432211 11224576666667788888999999 999999888776555332 3
Q ss_pred CC-C-----C------CccccchhhHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHhhhh-hhccCCCCCCC-CCc
Q 014060 342 LV-K-----K------VGLADGAAGNAYAFLSLYRLTGE-----TIYVERANAFSSFLYHNAQN-LVTSGHTRGAD-HGY 402 (431)
Q Consensus 342 ~~-~-----~------~~LCHG~aG~~~~Ll~l~~~t~~-----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 402 (431)
+. . . .++-=|.+=.++.|.++++.+++ +.+++.++++++.+.....+ ..+.-.+..+. .++
T Consensus 167 l~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~ 246 (336)
T PF07470_consen 167 LYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNY 246 (336)
T ss_dssp SBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-
T ss_pred ceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCc
Confidence 22 0 0 11333333344555566666644 45666666666665442111 01111111222 122
Q ss_pred ccccchHHHHHHHHH
Q 014060 403 SLFQGLAGTACIWFD 417 (431)
Q Consensus 403 gl~~G~aGI~~~Ll~ 417 (431)
-=-.|.|.++++|++
T Consensus 247 ~etSatA~~a~~l~~ 261 (336)
T PF07470_consen 247 RETSATAMFAYGLLR 261 (336)
T ss_dssp BEHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 223467778888876
No 24
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=94.95 E-value=1.9 Score=45.22 Aligned_cols=228 Identities=14% Similarity=0.037 Sum_probs=123.0
Q ss_pred cHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCc------c-----ccccc------chH-HHHHHHHHHHHc
Q 014060 85 LLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRH------V-----TFLCG------RGG-IYAIGAVVANRM 146 (431)
Q Consensus 85 ~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~------~-----~~~~G------~~G-i~~l~~~~~~~~ 146 (431)
+.|.+++ +..++|++.++.+.++++.+.+.-+.+..- . ..+.- ..| ++..+.-.++.+
T Consensus 66 l~a~a~~----~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~t 141 (520)
T PF07944_consen 66 LEAAAYA----YAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEAT 141 (520)
T ss_pred HHHHHHH----HHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHH
Confidence 4555544 446899999999999998877654321100 0 00111 012 222233346778
Q ss_pred CCcchHHHHHHHHHHHHHh-ccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhc
Q 014060 147 GDRSRRDFFLNLFLEIAQE-RALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAG 225 (431)
Q Consensus 147 ~d~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~ 225 (431)
|+++.++.+.+..+-+..- ..+ ++. ........|..|+..+|..||+.|+++++ .++++++++..-..
T Consensus 142 G~~~~L~v~~k~ad~~~~~~~~~--~~~----~~~~~~~~~~~~i~~~l~~LY~~Tgd~~y-----L~lA~~f~~~~~~~ 210 (520)
T PF07944_consen 142 GNERALDVATKLADWVYRRLSRL--GPE----PGQKMGYPEHGGINEALVRLYEITGDERY-----LDLAEYFVDQRGFD 210 (520)
T ss_pred CcHHHHHHHHHHHHHHHHHhccC--CHH----HhhcccccccchHHHHHHHHHHHhCCHHH-----HHHHHHHHHHhCCC
Confidence 9988777666555444100 111 111 01123445888999999999999998543 34455544422110
Q ss_pred ----cccCCCCCCcceeeccccCCCCcch------HHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCCCCCCCCC----
Q 014060 226 ----ATANTACPLMYRWHGTRYWGAANGL------AGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVS---- 291 (431)
Q Consensus 226 ----~~~~~~~~~~~~w~~~~~~G~aHG~------aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~---- 291 (431)
....+..+. ++ .+.-..|.. +|.+ .+.+...++++++.+++..+.+.....-..|...+.
T Consensus 211 ~~~~~~~~d~~~~---~~--a~~~~~h~vr~~y~~~g~a-~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E 284 (520)
T PF07944_consen 211 PYDLAYGQDHLPG---RH--ANTHIGHAVRAMYLYSGAA-DLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGE 284 (520)
T ss_pred CCchhhcCccCCC---cc--ccceeeEEEEhhhhhhHHH-HHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCc
Confidence 000000010 11 133344554 3432 223345788999999999988765332112222111
Q ss_pred --CCCC-CC--cccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 014060 292 --EGNP-RD--KLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAG 334 (431)
Q Consensus 292 --~~~~-~~--~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~ 334 (431)
.++. .+ ...+=.+.+.+.+.....+.+.++ |.+|.+.+++++
T Consensus 285 ~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tg-d~~yaD~~Er~l 331 (520)
T PF07944_consen 285 HFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTG-DARYADYYERAL 331 (520)
T ss_pred cCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCC-CchHHHHHHHHH
Confidence 1110 01 112445677788887778888999 999999999986
No 25
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.84 E-value=0.32 Score=49.23 Aligned_cols=135 Identities=19% Similarity=0.131 Sum_probs=90.5
Q ss_pred CCCCcchHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCCCCC---CCCCC-CCCCCcccccccCc--hHHHH-HHHHH
Q 014060 244 WGAANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGN---YPVSE-GNPRDKLVQWSHGA--TGVAI-TLCKA 316 (431)
Q Consensus 244 ~G~aHG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~~gn---w~~~~-~~~~~~~~~WChG~--~Gi~~-~l~~~ 316 (431)
..+.|=.+-++++|..- .||++.+.|..+++-+.+.|.. +|. |-... +.+.-....|||=- +|-++ +....
T Consensus 66 sdlgkwlea~A~~l~~~-~dp~Lekr~D~vi~~~a~~Qde-dGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~ 143 (589)
T COG3533 66 SDLGKWLEAAAYSLANK-GDPELEKRIDEVVEELARAQDE-DGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAA 143 (589)
T ss_pred ccHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhcc-CCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHH
Confidence 45667777777777653 5788888888889888877753 553 53322 22222236788862 12222 23445
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHc-CCC-CCCccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHH
Q 014060 317 SQVFPSDREFRDAAIEAGEVLWKN-GLV-KKVGLADGAAGNAYAFLSLYRLTGETIYVERANAFSSF 381 (431)
Q Consensus 317 ~~~~~~~~~~~~~a~~~~~~~~~~-g~~-~~~~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~ 381 (431)
+++++ ...+++.+.+.++.+.+- |-. ...-+-+|-.|+-.+|.++|+.|++++|++.|+.|..+
T Consensus 144 ~qaTG-kr~lldV~~rlADhi~tvfgp~~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~ 209 (589)
T COG3533 144 HQATG-KRRLLDVVCRLADHIATVFGPEEDQVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQ 209 (589)
T ss_pred HHhhC-cchHHHHHHHHHHhhhhhcCccccccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 77888 888998888888776331 212 23334457888999999999999999999999987654
No 26
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=94.40 E-value=0.52 Score=45.01 Aligned_cols=133 Identities=11% Similarity=0.146 Sum_probs=79.4
Q ss_pred chHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC--ccccccc-CchHHHHHHHHHHhhCC-
Q 014060 249 GLAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRD--KLVQWSH-GATGVAITLCKASQVFP- 321 (431)
Q Consensus 249 G~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~--~~~~WCh-G~~Gi~~~l~~~~~~~~- 321 (431)
++.--+-+|++++ .++.+.+.+.++++|+++.|++ +|.||...+.... ....+|= +...++..|..+.+..+
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQyp-nGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~ 123 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYP-NGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDP 123 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCC-CCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCC
Confidence 3444445666653 5788999999999999999988 8999986643221 1234553 34455555555544221
Q ss_pred -----C--CHHHHHHHHHHHHHHHHcCC-----C-----------------CC---Cccccch-hhHHHHHHHHHHHhCC
Q 014060 322 -----S--DREFRDAAIEAGEVLWKNGL-----V-----------------KK---VGLADGA-AGNAYAFLSLYRLTGE 368 (431)
Q Consensus 322 -----~--~~~~~~~a~~~~~~~~~~g~-----~-----------------~~---~~LCHG~-aG~~~~Ll~l~~~t~~ 368 (431)
+ .++....+.++++++.+... . +. ++||-+- +|+..+|+.+. .++
T Consensus 124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~--~ps 201 (290)
T TIGR02474 124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQP--NPS 201 (290)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCC--CCC
Confidence 0 14566667777777744321 1 11 4666554 45666665555 355
Q ss_pred chHHHHHHHHHHHHHH
Q 014060 369 TIYVERANAFSSFLYH 384 (431)
Q Consensus 369 ~~~~~~a~~~~~~~~~ 384 (431)
++.++......+++..
T Consensus 202 ~~i~~ai~~A~~W~~~ 217 (290)
T TIGR02474 202 AEIKEAIRAGVAWFDT 217 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777766666644
No 27
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=2.3 Score=45.11 Aligned_cols=128 Identities=16% Similarity=0.040 Sum_probs=83.8
Q ss_pred CCCccccccHHHHH-HHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCcccccccch---HH---HHHH----HHHHHH
Q 014060 77 MDPTLYTGLLGTAF-ICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRG---GI---YAIG----AVVANR 145 (431)
Q Consensus 77 ~~~~LY~G~~Gial-~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G~~---Gi---~~l~----~~~~~~ 145 (431)
.+.-.+.+.-|... .|++.++++++++|++.|.+....+.+.+....-...++.|.+ |. |+++ .-+|+.
T Consensus 404 ~Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~ 483 (667)
T COG1331 404 RDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEA 483 (667)
T ss_pred CCcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccchheeeecCcccccccchhHHHHHHHHHHHHHh
Confidence 45556777767654 4788999999999999999999988887653222344555533 21 2221 225778
Q ss_pred cCCcchHHHHHHHHHHHHHhccCCC---CC-----------CCCCCCCcccccccchHHHHHHHHHhhhhCCCCC
Q 014060 146 MGDRSRRDFFLNLFLEIAQERALPA---GP-----------EEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTL 206 (431)
Q Consensus 146 ~~d~~~~~~~~~~~~~~~~~~~l~~---~~-----------~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~ 206 (431)
++|.+|++.+.+..++++. .+.. |+ ..........+.+|.|=++.+|+.|...+++..+
T Consensus 484 t~d~~yL~~A~~L~~~~i~--~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y 556 (667)
T COG1331 484 TGDLAYLEKAIELADEAIA--DFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARY 556 (667)
T ss_pred hCcHHHHHHHHHHHHHHHH--HhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhH
Confidence 8999999999888777753 1210 10 0000112233467889999999999999998543
No 28
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=92.92 E-value=9.7 Score=37.05 Aligned_cols=225 Identities=20% Similarity=0.187 Sum_probs=118.9
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHc
Q 014060 142 VANRMGDRSRRDFFLNLFLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAG 221 (431)
Q Consensus 142 ~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~ 221 (431)
.++.++|.++++.+..-+...+.+.-++ ..+.|-+ .+|. .|+-+++.+++++++ +.+.+.++.++..
T Consensus 48 ~~eAT~d~~yl~~l~~~~d~~i~~~g~~--------~~~id~i--~~g~--~L~~L~e~T~~~~Yl-~~a~~~a~~l~~~ 114 (357)
T COG4225 48 AYEATGDAEYLDYLKTWFDEQIDEGGLP--------PRNIDHI--AAGL--TLLPLYEQTGDPRYL-EAAIKLASWLVHE 114 (357)
T ss_pred HHHHcCcHHHHHHHHHHHHhhhccCCCC--------ccchhhh--ccCc--eeeehhhhhCCHHHH-HHHHHHHHHHhhC
Confidence 5677899999998888777765321121 1222222 2333 467779999998775 4566677777665
Q ss_pred chhccccCCCCCCcceeecccc--CCCCcchHHHHHHHhcCC---CChHHHHH-HHHHHHHHHhccCCCCCCCCCCC---
Q 014060 222 GRAGATANTACPLMYRWHGTRY--WGAANGLAGILQVLLHFP---LSEEDAED-VKGTLRYMMSNRFPQSGNYPVSE--- 292 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~w~~~~~--~G~aHG~aGI~~~L~~~~---~~~~~~~~-i~~~l~~~~~~~~~~~gnw~~~~--- 292 (431)
.+. .. ..-|+...+ =-|+-|.-=-..+++++. .++++.+. +.+-..-+.-+++|+.|-|-+..
T Consensus 115 ~Rt-~e-------G~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~ 186 (357)
T COG4225 115 PRT-KE-------GGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDED 186 (357)
T ss_pred ccc-CC-------CccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccC
Confidence 422 11 111221111 112222221123455543 57777554 44444444445556555443222
Q ss_pred ------CCCCCcccccccCchHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHHHH----cCC-----CC----CCccc
Q 014060 293 ------GNPRDKLVQWSHGATGVAITLCKASQVFPSD----REFRDAAIEAGEVLWK----NGL-----VK----KVGLA 349 (431)
Q Consensus 293 ------~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~----~~~~~~a~~~~~~~~~----~g~-----~~----~~~LC 349 (431)
++.+....-|--|..=.++++..+...++++ .++.+........+.+ .|+ .+ ++-=-
T Consensus 187 ~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~Es 266 (357)
T COG4225 187 GTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLES 266 (357)
T ss_pred CCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhh
Confidence 1111113568777777777877777776521 2333333333333321 122 11 22334
Q ss_pred cchhhHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhh
Q 014060 350 DGAAGNAYAFLSLYRL-TGETIYVERANAFSSFLYHNAQ 387 (431)
Q Consensus 350 HG~aG~~~~Ll~l~~~-t~~~~~~~~a~~~~~~~~~~~~ 387 (431)
-|++|+++++++--+. .-++++...+++..+-+++.+.
T Consensus 267 SaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~ 305 (357)
T COG4225 267 SASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHID 305 (357)
T ss_pred hHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcc
Confidence 5899999999986554 2456666777777777766543
No 29
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=92.28 E-value=0.32 Score=46.38 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=74.0
Q ss_pred hHHHHHHHhcCC---CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCc--ccccccCc-hHHHHHHHHHHhhCCC-
Q 014060 250 LAGILQVLLHFP---LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDK--LVQWSHGA-TGVAITLCKASQVFPS- 322 (431)
Q Consensus 250 ~aGI~~~L~~~~---~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~--~~~WChG~-~Gi~~~l~~~~~~~~~- 322 (431)
+.--+.+|++++ .++++++.+.++++|+++.|++ +|.||...+..... ...+=-++ .+++..|..+.+..+.
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQyp-nGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYP-NGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-T-TS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCC-CCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 344456677654 5889999999999999999998 99999866432211 12222233 3444455555554441
Q ss_pred ---CH----HHHHHHHHHHHHHHHcCC-----------------C-----CC---Cccccch-hhHHHHHHHHHHHhCCc
Q 014060 323 ---DR----EFRDAAIEAGEVLWKNGL-----------------V-----KK---VGLADGA-AGNAYAFLSLYRLTGET 369 (431)
Q Consensus 323 ---~~----~~~~~a~~~~~~~~~~g~-----------------~-----~~---~~LCHG~-aG~~~~Ll~l~~~t~~~ 369 (431)
++ +..+.+.+.++++.+.-+ + ++ ++||-+- +|+..+|+.+++.+ +
T Consensus 120 ~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps--~ 197 (289)
T PF09492_consen 120 AFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS--P 197 (289)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS----H
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC--H
Confidence 22 455556666677744322 0 12 6888765 56777777777665 7
Q ss_pred hHHHHHHHHHHHHH
Q 014060 370 IYVERANAFSSFLY 383 (431)
Q Consensus 370 ~~~~~a~~~~~~~~ 383 (431)
+.++.....++++-
T Consensus 198 ~v~~aI~~AvaWl~ 211 (289)
T PF09492_consen 198 EVLAAIEAAVAWLE 211 (289)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666653
No 30
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=91.93 E-value=0.37 Score=48.16 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhccCCC--CCC--CCCCCCCCCCcccccc-cCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 014060 265 EDAEDVKGTLRYMMSNRFPQ--SGN--YPVSEGNPRDKLVQWS-HGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWK 339 (431)
Q Consensus 265 ~~~~~i~~~l~~~~~~~~~~--~gn--w~~~~~~~~~~~~~WC-hG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~ 339 (431)
++++.+++..+++....... .|. |.....+.......-| .|.. +...++++++++ ++.|++.|.++.+-+.+
T Consensus 113 ~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~--~~laarL~~~t~-~~~Yl~~A~~~~~W~~~ 189 (370)
T PF03663_consen 113 KYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTNSGYDYKNAISNGPA--AQLAARLYRITG-DQTYLDWAKKIYDWMRD 189 (370)
T ss_dssp HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----TEEEEEEHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCCccccccccCCCCCcccccchHHH--HHHHHHHHHhcC-ChHHHHHHHHHHHHhhc
Confidence 89999999999988544432 232 5321111111122233 2222 222345666778 99999999999876544
Q ss_pred cCCC-CC---------------------CccccchhhHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHh
Q 014060 340 NGLV-KK---------------------VGLADGAAGNAYAFLSLYRLTGET-IYVERANAFSSFLYHN 385 (431)
Q Consensus 340 ~g~~-~~---------------------~~LCHG~aG~~~~Ll~l~~~t~~~-~~~~~a~~~~~~~~~~ 385 (431)
.++. .+ .+.+.|+. +.++..||+.|+++ .|+++|+++++.+++.
T Consensus 190 ~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~--l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 190 SGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVF--LGAAAYLYNATNDEQTYLDRAEKLADAAINH 256 (370)
T ss_dssp -HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHH--HHHHHHHHHHH--H-HHHHHHHHHHHHHHHH
T ss_pred ceeEECCCcEEEeCCccCCCCCcCCCceechHHHHH--HHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 2332 10 22333443 46677899999877 9999999999998776
No 31
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=91.28 E-value=0.54 Score=46.43 Aligned_cols=123 Identities=19% Similarity=0.153 Sum_probs=76.5
Q ss_pred CChHHHHHHHHHHHHHHhccC-CCCCCCCCCCCCCC-CcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 014060 262 LSEEDAEDVKGTLRYMMSNRF-PQSGNYPVSEGNPR-DKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWK 339 (431)
Q Consensus 262 ~~~~~~~~i~~~l~~~~~~~~-~~~gnw~~~~~~~~-~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~ 339 (431)
.++++++.++.+++|+.+... ++.|.|-....... .....=++..+=+++++.. +..++ ++++.+.|+++.+.+.+
T Consensus 37 g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~~tg-~~~~~~~A~~~~~~l~~ 114 (346)
T PF07221_consen 37 GRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE-ARATG-DPEALELAEQTLEFLER 114 (346)
T ss_dssp TSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH-HHCTT--TTHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH-HHHhC-ChhHHHHHHHHHHHHHH
Confidence 478899999999999998765 45577754432111 0111123333334555555 56788 88999999888876633
Q ss_pred c------CCC-----CCCccccchhh---HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh
Q 014060 340 N------GLV-----KKVGLADGAAG---NAYAFLSLYRLTGETIYVERANAFSSFLYHNA 386 (431)
Q Consensus 340 ~------g~~-----~~~~LCHG~aG---~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~ 386 (431)
. |.. ......-+..- ...+++.+++.++++.|+++|+++++.+++..
T Consensus 115 ~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f 175 (346)
T PF07221_consen 115 RFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRF 175 (346)
T ss_dssp HTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 2 111 11122212111 34567889999999999999999999887643
No 32
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=90.30 E-value=1.2 Score=45.71 Aligned_cols=118 Identities=16% Similarity=0.077 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHHHHHHHhhccCC---------C-CCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHH
Q 014060 42 LPCETFLKAAVSLKDQVVEVTWRRG---------S-GGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEI 111 (431)
Q Consensus 42 ~~~~~~l~~A~~i~~~l~~~~w~~~---------~-~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~ 111 (431)
.-+.++|..|+++|++++...-... . |.+.. -.+.+=-.|.+...+-|.-|.++|||++|.+.|+++
T Consensus 148 ~y~g~LLrLA~dlA~RLLPAF~T~TGiPy~~vNLk~GV~~~---Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A 224 (622)
T KOG2429|consen 148 DYDGELLRLAEDLARRLLPAFETPTGIPYGRVNLKYGVDKG---ETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRA 224 (622)
T ss_pred CCCchHHHHHHHHHHhhcccccCCCCCCcceeehhcCCCCC---CCcceecccccceeeehhhhHHhhCCcHHHHHHHHH
Confidence 4567899999999999996432111 1 11100 023334456666667788899999999999999999
Q ss_pred HHHHHHHhhc---cCCccccccc---------chHHHHHHHH---HHHHcCCcchHHHHHHHHHHH
Q 014060 112 IDTCASVVRD---STRHVTFLCG---------RGGIYAIGAV---VANRMGDRSRRDFFLNLFLEI 162 (431)
Q Consensus 112 l~~~~~~~~~---~~~~~~~~~G---------~~Gi~~l~~~---~~~~~~d~~~~~~~~~~~~~~ 162 (431)
++.+=+.... ....+...+| .+||-.+... .|-.+||+++++.+.+....+
T Consensus 225 ~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai 290 (622)
T KOG2429|consen 225 LDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAI 290 (622)
T ss_pred HHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHHHHHHHHHH
Confidence 9876543221 1223334443 3455333333 344689999888766655444
No 33
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.25 E-value=1.4 Score=44.85 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 014060 44 CETFLKAAVSLKDQVVEVTWRRGSGGGGEPGRGMDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDT 114 (431)
Q Consensus 44 ~~~~l~~A~~i~~~l~~~~w~~~~~~~~~~~~~~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~~ 114 (431)
+..+++.+.+.+|+|...+ ++. ++ + .-+|.|-+||-+.|..||++|++++|+++|+..+..
T Consensus 149 kr~lldV~~rlADhi~tvf--gp~-~~--q-----~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~ 209 (589)
T COG3533 149 KRRLLDVVCRLADHIATVF--GPE-ED--Q-----VPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQ 209 (589)
T ss_pred cchHHHHHHHHHHhhhhhc--Ccc-cc--c-----cccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3356777778888887753 221 11 2 247999999999999999999999999999888864
No 34
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=87.07 E-value=11 Score=37.06 Aligned_cols=240 Identities=18% Similarity=0.200 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccC-Cc-------ccccccchH-------HHHHHHHHHHHcCCcch
Q 014060 87 GTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDST-RH-------VTFLCGRGG-------IYAIGAVVANRMGDRSR 151 (431)
Q Consensus 87 Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~-~~-------~~~~~G~~G-------i~~l~~~~~~~~~d~~~ 151 (431)
=.+++|+.++. ++++.+++.|...++.+.+...+.. .. .+...+..- ++++.. +..++++++
T Consensus 25 R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~--~~~tg~~~~ 101 (346)
T PF07221_consen 25 RQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE--ARATGDPEA 101 (346)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH--HHCTT-TTH
T ss_pred HHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH--HHHhCChhH
Confidence 35688899998 8999999999999998887664211 10 011111111 122222 456788888
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCC--cccc--cccchH---HHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchh
Q 014060 152 RDFFLNLFLEIAQERALPAGPEEGGFGM--SYDL--LYGRAG---FLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRA 224 (431)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~D~--l~G~aG---~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~ 224 (431)
++.+.+.+..+.. ... ++..++... ..|. .-+..- ++-+++.+++.++++.++ +.+.++++.++..
T Consensus 102 ~~~A~~~~~~l~~--~~~-d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~-~~a~~l~~~~~~~--- 174 (346)
T PF07221_consen 102 LELAEQTLEFLER--RFW-DPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYL-DRAEELLDLFLDR--- 174 (346)
T ss_dssp HHHHHHHHHHHHH--HTE-ETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHH--Hhc-ccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHHH---
Confidence 7776666555542 121 010000000 0111 111111 234667788888874432 3444555444421
Q ss_pred ccccC-CCCCCcc--eeeccccCCCC------cchHHH----HHHHhcCC-----CChHHHHHHHHHHHHHHhccC-CCC
Q 014060 225 GATAN-TACPLMY--RWHGTRYWGAA------NGLAGI----LQVLLHFP-----LSEEDAEDVKGTLRYMMSNRF-PQS 285 (431)
Q Consensus 225 ~~~~~-~~~~~~~--~w~~~~~~G~a------HG~aGI----~~~L~~~~-----~~~~~~~~i~~~l~~~~~~~~-~~~ 285 (431)
+.... ...+..+ .|......+.. +=.+|= ++.|+++. .++++.+.+.+..++...... ++.
T Consensus 175 f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~ 254 (346)
T PF07221_consen 175 FADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDREG 254 (346)
T ss_dssp CHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTTT
T ss_pred HHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecCC
Confidence 11110 0001111 13221111111 112332 24444432 356667777777777666443 223
Q ss_pred CCCCCCC---CC-CCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 014060 286 GNYPVSE---GN-PRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWK 339 (431)
Q Consensus 286 gnw~~~~---~~-~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~ 339 (431)
|.+.... +. ......-|.|-- .+.+++.+++.++ ++.+.+.+.++.+.+++
T Consensus 255 gG~~~~~d~~g~~~~~~k~wW~q~E--al~a~~~~~~~tg-~~~~~~~~~~~~~~~~~ 309 (346)
T PF07221_consen 255 GGLFYSVDRDGKPPDRSKRWWPQAE--ALKALLAAYELTG-DEKYLDWARRVWDYIFR 309 (346)
T ss_dssp SSB-SEEETTS-BSST-EEHHHHHH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccccCccccHHHH--HHHHHHHHHhccC-cHHHHHHHHHHHHHHHH
Confidence 3332222 11 112235677643 3445566788888 99999988888877654
No 35
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=85.19 E-value=4.4 Score=40.53 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCc--ccccccCchHHHHHHHHHHhhCCCCH-----HHHHHHHHHH
Q 014060 262 LSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDK--LVQWSHGATGVAITLCKASQVFPSDR-----EFRDAAIEAG 334 (431)
Q Consensus 262 ~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~--~~~WChG~~Gi~~~l~~~~~~~~~~~-----~~~~~a~~~~ 334 (431)
.++++.+.+.+.+........ ..|.......... -..| .+++++.++++++ ++ +|++.|++..
T Consensus 53 ~d~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~DD~aw------~~la~l~aye~t~-~~~~~~~~yL~~A~~i~ 122 (370)
T PF03663_consen 53 GDPTYNDLIQNALLNQRGPNY---DSYNPSNGSGDRYYDDNAW------WALALLRAYELTG-DQPSDNPKYLDLAKEIF 122 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHTT---SSS--S------BHHHHHH------HHHHHHHHHHHH---H-----HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcccc---cccccccccccCccChHHH------HHHHHHHHHHhhC-CCcchHHHHHHHHHHHH
Confidence 467888888888887664321 1121111000000 1355 6788889999999 88 9999999998
Q ss_pred HHHHHcCCCCCCcccc--------------------chhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 014060 335 EVLWKNGLVKKVGLAD--------------------GAAGNAYAFLSLYRLTGETIYVERANAFSSFLYH 384 (431)
Q Consensus 335 ~~~~~~g~~~~~~LCH--------------------G~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~ 384 (431)
+.++ .+.- ...|. ..+.-+.+..++|+.|+++.|++.|+++.+++.+
T Consensus 123 ~~~~-~~wd--~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~ 189 (370)
T PF03663_consen 123 DFLI-SGWD--DTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRD 189 (370)
T ss_dssp HHHH-HTB---SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcC--CccCCCCccccccccCCCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhc
Confidence 8775 2221 11122 2333455566899999999999999999999877
No 36
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=83.84 E-value=17 Score=38.00 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCCCC--------CCCC-CCC--CCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHH
Q 014060 44 CETFLKAAVSLKDQVVEVTWRRGSGG--------GGEP-GRG--MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEII 112 (431)
Q Consensus 44 ~~~~l~~A~~i~~~l~~~~w~~~~~~--------~~~~-~~~--~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l 112 (431)
++.||+.|.++||.|+... ..+.+. .... ... .+.+.-...+.+.+-|.+|.++|||++|.+.+.++.
T Consensus 173 d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 173 DEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVM 251 (522)
T ss_pred CHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 5679999999999999642 222110 0000 000 122233345566677999999999999999998888
Q ss_pred HHHHH
Q 014060 113 DTCAS 117 (431)
Q Consensus 113 ~~~~~ 117 (431)
+.+.+
T Consensus 252 ~~l~~ 256 (522)
T PTZ00470 252 DALFS 256 (522)
T ss_pred HHHHh
Confidence 77654
No 37
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=82.33 E-value=16 Score=35.35 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=85.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhhccCCC----------CC-CCCCCCCCCCccccccHH-HHHHHHHHHhhhCCHHHH
Q 014060 38 INMSLPCETFLKAAVSLKDQVVEVTWRRGS----------GG-GGEPGRGMDPTLYTGLLG-TAFICLRSYELTGNQQEL 105 (431)
Q Consensus 38 ~~~~~~~~~~l~~A~~i~~~l~~~~w~~~~----------~~-~~~~~~~~~~~LY~G~~G-ial~l~~L~~~t~~~~~~ 105 (431)
..+...++++++.|++++.+|+...-.... |. +-+...+...+-..--+| .++-|+.|.++||++.|.
T Consensus 128 e~lq~y~dellkmakelg~kllpafnttsglp~~rinlk~gi~~pea~~~~e~dtctac~gtlilefaals~~tg~~ife 207 (587)
T KOG2430|consen 128 ERLQTYDDELLKMAKELGNKLLPAFNTTSGLPFPRINLKFGIQDPEAHLGREKDTCTACAGTLILEFAALSRFTGAPIFE 207 (587)
T ss_pred chhhhhhHHHHHHHHHHhhhhccccccCCCCCCcccchhccccChhhhhcccccchhhccchhhhhHHHHhhccCChhhH
Confidence 455667889999999999999954211111 10 000011111111222223 456688899999999999
Q ss_pred HHHHHHHHHHHHHhh-cc---CCccccc--------cc-chHH---HHHHHHHHHHcCCcchHHHHHHHHHHHHHhccCC
Q 014060 106 LLSAEIIDTCASVVR-DS---TRHVTFL--------CG-RGGI---YAIGAVVANRMGDRSRRDFFLNLFLEIAQERALP 169 (431)
Q Consensus 106 ~~a~~~l~~~~~~~~-~~---~~~~~~~--------~G-~~Gi---~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~ 169 (431)
+.|++.++.+-+... .+ ....... +| .+|| |-.+...|-.+||+.+++++-+..+.+.. .+.
T Consensus 208 e~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lkayillgddsfldrfn~hydai~r--yi~ 285 (587)
T KOG2430|consen 208 EKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKAYILLGDDSFLDRFNKHYDAIKR--YIN 285 (587)
T ss_pred HHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHHhheeccHHHHHHHHHHHHHHHH--Hhc
Confidence 999999986544221 11 1111122 22 2344 32333356678999999988876666542 333
Q ss_pred CCCCCCCCCCcccc-----cccchHHHHHHHHHh
Q 014060 170 AGPEEGGFGMSYDL-----LYGRAGFLWAALFVN 198 (431)
Q Consensus 170 ~~~~~~~~~~~~D~-----l~G~aG~i~~Ll~l~ 198 (431)
.+| --.|+ +-..-|.+-+|+.++
T Consensus 286 k~p------i~ldvhihkp~l~ar~~mdallaf~ 313 (587)
T KOG2430|consen 286 KGP------IFLDVHIHKPMLAARGFMDALLAFF 313 (587)
T ss_pred CCC------eEEEEecccchhhHhhHHHHHHHhC
Confidence 332 12333 225567776777654
No 38
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=75.44 E-value=13 Score=38.85 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=49.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHHHH-----cCCC-----------CCC---ccccchhhHHHH---HHHHHHHhCCc
Q 014060 312 TLCKASQVFPSDREFRDAAIEAGEVLWK-----NGLV-----------KKV---GLADGAAGNAYA---FLSLYRLTGET 369 (431)
Q Consensus 312 ~l~~~~~~~~~~~~~~~~a~~~~~~~~~-----~g~~-----------~~~---~LCHG~aG~~~~---Ll~l~~~t~~~ 369 (431)
+|+.++...+ ++.+++.|...++.+.. .|+. ... +-|..++..+-. |.++++.|||+
T Consensus 163 GLLSAy~Ls~-d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~ 241 (522)
T PTZ00470 163 GLLSAYDLTG-DEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDP 241 (522)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCH
Confidence 4566788888 99999999999887632 2321 111 233333333333 66789999999
Q ss_pred hHHHHHHHHHHHHHHh
Q 014060 370 IYVERANAFSSFLYHN 385 (431)
Q Consensus 370 ~~~~~a~~~~~~~~~~ 385 (431)
+|.+.|+++.+.+.+.
T Consensus 242 kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 242 KYAEYVDKVMDALFSM 257 (522)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998877553
No 39
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=73.69 E-value=47 Score=31.89 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=82.6
Q ss_pred ccccc-cHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHHcCCcchHHHHHHH
Q 014060 80 TLYTG-LLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRDSTRHVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNL 158 (431)
Q Consensus 80 ~LY~G-~~Gial~l~~L~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~G~~Gi~~l~~~~~~~~~d~~~~~~~~~~ 158 (431)
++=+| +..-+-||+++|+.+++++|++.+.+.|+.+++.--.+..-+.+|-=..| | . -+-.++| +.....+..
T Consensus 35 TiDN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~-Y---~-~~ITfND-dam~~vl~l 108 (289)
T PF09492_consen 35 TIDNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGG-Y---H-DHITFND-DAMVNVLEL 108 (289)
T ss_dssp E-GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SG-G---G-GSEE-GG-GHHHHHHHH
T ss_pred cccChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCC-C---C-CceEEcc-HHHHHHHHH
Confidence 33344 56677899999999999999999999999988642211111222211222 0 0 0001222 333333444
Q ss_pred HHHHHHhccCCCCCCCCCCCCcccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcce-
Q 014060 159 FLEIAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYR- 237 (431)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~- 237 (431)
+..+.. . ...++++.- .+.... .+.+.+-++.|++.-... +. ....|.
T Consensus 109 L~~v~~--~----------~~~~~~v~~---------~~~~r~------~~A~~kgi~ciL~tQi~~--~g--~~t~W~q 157 (289)
T PF09492_consen 109 LRDVAE--G----------KGDFAFVDE---------SLRARA------RAAVDKGIDCILKTQIRQ--NG--KLTAWCQ 157 (289)
T ss_dssp HHHHHC--T-----------TTSTTS-H---------HHHHHH------HHHHHHHHHHHHHHS-EE--TT--EE----S
T ss_pred HHHHHh--h----------cCCccccCH---------HHHHHH------HHHHHHHHHHHHHHHccc--CC--CCCchhh
Confidence 433320 0 112333320 001111 245566667776643211 10 000121
Q ss_pred eecc-----------ccCCC-CcchHHHHHHHhcCC-CChHHHHHHHHHHHHHHhccC
Q 014060 238 WHGT-----------RYWGA-ANGLAGILQVLLHFP-LSEEDAEDVKGTLRYMMSNRF 282 (431)
Q Consensus 238 w~~~-----------~~~G~-aHG~aGI~~~L~~~~-~~~~~~~~i~~~l~~~~~~~~ 282 (431)
-++. ...++ ++-.+||+.+|+.+. ..+++++.|..+++|+.+...
T Consensus 158 QhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki 215 (289)
T PF09492_consen 158 QHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKI 215 (289)
T ss_dssp EE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSE
T ss_pred ccCcccccccccccCCCcccccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcC
Confidence 1111 12444 577899999999987 478999999999999976544
No 40
>PLN02993 lupeol synthase
Probab=72.11 E-value=44 Score=36.70 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=59.9
Q ss_pred ccccccchHHHHHHHHHhhhhCCC--CCchhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHHHh
Q 014060 181 YDLLYGRAGFLWAALFVNKHLGAG--TLPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLL 258 (431)
Q Consensus 181 ~D~l~G~aG~i~~Ll~l~~~~~~~--~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~L~ 258 (431)
+.....++-++-+|..+.+..++. .-++..+++.++.|.+.-+ + .-.|.+.--+.+..|++-.+.+|.
T Consensus 560 ~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~---------~-DGSW~G~Wgv~y~YgT~~aL~aL~ 629 (763)
T PLN02993 560 REYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQT---------P-DGSWYGNWGICFIYATWFALGGLA 629 (763)
T ss_pred CCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcC---------C-CCCcccccccccCcHHHHHHHHHH
Confidence 334557888888888775533321 1113455666665554211 1 123544333455558888888887
Q ss_pred cCCCChHHHHHHHHHHHHHHhccCCCCCCCCC
Q 014060 259 HFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPV 290 (431)
Q Consensus 259 ~~~~~~~~~~~i~~~l~~~~~~~~~~~gnw~~ 290 (431)
.........+.++++++|+++.+.+ +|.|--
T Consensus 630 a~G~~~~~~~~IrrAv~fLls~Q~~-DGGWGE 660 (763)
T PLN02993 630 AAGKTYNDCLAMRKGVHFLLTIQRD-DGGWGE 660 (763)
T ss_pred HcCCCCCCcHHHHHHHHHHHHhcCC-CCCcCc
Confidence 7654333346799999999998876 899953
No 41
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=68.97 E-value=5.1 Score=31.90 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=10.4
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHc
Q 014060 270 VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKN 340 (431)
Q Consensus 270 i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~ 340 (431)
|+++++|+++.|.+ +|.|+... ++.......++.+....+ ++.+.+.+.++.+.+.+.
T Consensus 1 i~~~~~~l~~~Q~~-dG~W~~~~-----------~~~~~~t~~~~~al~~~~-~~~~~~ai~ka~~~l~~~ 58 (109)
T PF13243_consen 1 IKRAAEWLLSQQNP-DGSWGYNW-----------GSDVFVTAALILALAAAG-DAAVDEAIKKAIDWLLSH 58 (109)
T ss_dssp -----------------------------------------------------TS-SSBSSHHHHHHHHH-
T ss_pred Cccccccccccccc-cccccccc-----------cccccccccccccccccC-CCCcHHHHHHHHHHHHHh
Confidence 57889999998876 89995332 122222222333333344 556666677777766554
No 42
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=67.65 E-value=23 Score=36.28 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCCC-------CC--Ccccc--chhhHHHHHHHHHHHhCCchHHHHHHH
Q 014060 309 VAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLV-------KK--VGLAD--GAAGNAYAFLSLYRLTGETIYVERANA 377 (431)
Q Consensus 309 i~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-------~~--~~LCH--G~aG~~~~Ll~l~~~t~~~~~~~~a~~ 377 (431)
.++.+..++.+.+ |+++-+.+..+++ ..|+. .. ...-+ -..=.+++++.+|+.|++++|++.|.+
T Consensus 389 yll~~vra~~~s~-D~~Lw~~~~~m~~---~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~ 464 (557)
T PF06917_consen 389 YLLPYVRAYRLSR-DPELWDLARTMAH---HFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQ 464 (557)
T ss_dssp HHHHHHHHHHHS---HHHHHHHHHHHH---HTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HhHHHHHHHHcCC-CHHHHHHHHHHHh---hcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5667788888888 9998888877764 22321 11 11111 123356788999999999999999999
Q ss_pred HHHHHHHhh
Q 014060 378 FSSFLYHNA 386 (431)
Q Consensus 378 ~~~~~~~~~ 386 (431)
+++.++++.
T Consensus 465 ~g~~l~~~~ 473 (557)
T PF06917_consen 465 VGENLFEQH 473 (557)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998863
No 43
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=67.42 E-value=71 Score=33.28 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=73.6
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC-CCcccccccCchHHHHH-------HHHHHhhCCCCHHHHH
Q 014060 257 LLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNP-RDKLVQWSHGATGVAIT-------LCKASQVFPSDREFRD 328 (431)
Q Consensus 257 L~~~~~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~-~~~~~~WChG~~Gi~~~-------l~~~~~~~~~~~~~~~ 328 (431)
|.++..|+.+.+.+++|++.+-+.+.+ -| ..++. ......|--=.+||+-+ +++.+-.|+ ++++.+
T Consensus 208 LSrLTGD~~fE~vA~~A~~~lW~~RS~-ig----LlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfg-d~e~le 281 (622)
T KOG2429|consen 208 LSRLTGDPKFEKVARRALDALWSLRSG-IG----LLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFG-DPELLE 281 (622)
T ss_pred hHHhhCCcHHHHHHHHHHHHHHhhcCC-CC----cccceeeccccceeccccccccchHHHHHHHHHHheecC-CHHHHH
Confidence 445567999999999999998776543 11 11111 11124576667777655 344455677 777665
Q ss_pred HHHHHHHHH-------------------------------------------------------HHc-CCC-CCCccccc
Q 014060 329 AAIEAGEVL-------------------------------------------------------WKN-GLV-KKVGLADG 351 (431)
Q Consensus 329 ~a~~~~~~~-------------------------------------------------------~~~-g~~-~~~~LCHG 351 (431)
.-..+.+.+ |++ |.+ ..+.+-++
T Consensus 282 mf~ea~~ai~~y~r~~~wY~~V~m~~G~v~~p~~dSLqAfwpGlqvLaGDvd~A~~~h~~y~~vwkkyG~lPEryN~~~~ 361 (622)
T KOG2429|consen 282 MFNEAYEAIQKYTRKGPWYVNVNMDSGSVSLPWFDSLQAFWPGLQVLAGDVDDAIRTHLMYFSVWKKYGFLPERYNLATQ 361 (622)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEecCCCceehHHHhhHHhhccchhhhhcchHHHHHHHHHHHHHHHHcCCCcccccccCC
Confidence 544433222 543 543 33666666
Q ss_pred hhh-----------HHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 014060 352 AAG-----------NAYAFLSLYRLTGETIYVERANAFSSFL 382 (431)
Q Consensus 352 ~aG-----------~~~~Ll~l~~~t~~~~~~~~a~~~~~~~ 382 (431)
..+ ..+.-..+|++|+|+-|++....+.+-+
T Consensus 362 ~~~~~~~~YPLRPElvEStyyLYrATkdp~yL~vG~~~l~sL 403 (622)
T KOG2429|consen 362 EPPPKREGYPLRPELVESTYYLYRATKDPFYLHVGEDMLKSL 403 (622)
T ss_pred CCCCCcccCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 662 3455567899999999998777666544
No 44
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=66.99 E-value=30 Score=33.17 Aligned_cols=142 Identities=10% Similarity=0.095 Sum_probs=84.1
Q ss_pred cchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcce-eec--ccc---CCC-CcchHHHHHHHh
Q 014060 186 GRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYR-WHG--TRY---WGA-ANGLAGILQVLL 258 (431)
Q Consensus 186 G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~-w~~--~~~---~G~-aHG~aGI~~~L~ 258 (431)
++.--+..|+.+|+.++++.+ .+.+.+.++.|+..-.. +. .|. +.. ..| +-| -+++..++-+|.
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y-~~A~~rgld~LL~aQyp--nG------GWPQf~p~~~~Y~~~ITfND~am~~vl~lL~ 115 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKY-RDAARKGIEYLLKAQYP--NG------GWPQFYPLKGGYSDAITYNDNAMVNVLTLLD 115 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHhhhCC--CC------CcCcccCCcCCcccccccCcHHHHHHHHHHH
Confidence 566778899999999988666 45677778888774211 10 121 111 011 222 224667777765
Q ss_pred cCC--------CC----hHHHHHHHHHHHHHHhccCCCCC----CCCCCCCC--------CCCcccccc-cCchHHHHHH
Q 014060 259 HFP--------LS----EEDAEDVKGTLRYMMSNRFPQSG----NYPVSEGN--------PRDKLVQWS-HGATGVAITL 313 (431)
Q Consensus 259 ~~~--------~~----~~~~~~i~~~l~~~~~~~~~~~g----nw~~~~~~--------~~~~~~~WC-hG~~Gi~~~l 313 (431)
.+. .+ ++....+.++++++++.|.+ .+ .|...-+. ..=.+.+.| +=+.||+..|
T Consensus 116 ~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~-~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~L 194 (290)
T TIGR02474 116 DIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVV-QNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFL 194 (290)
T ss_pred HHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcc-cCCcCCchhhccCccccccccccccCCcccccccHHHHHHHH
Confidence 431 11 35567899999999998876 33 34222111 111246777 5567777766
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHc
Q 014060 314 CKASQVFPSDREFRDAAIEAGEVLWKN 340 (431)
Q Consensus 314 ~~~~~~~~~~~~~~~~a~~~~~~~~~~ 340 (431)
+... -. ++++++.+..+.+.+-+.
T Consensus 195 M~~~--~p-s~~i~~ai~~A~~W~~~~ 218 (290)
T TIGR02474 195 MTQP--NP-SAEIKEAIRAGVAWFDTS 218 (290)
T ss_pred hcCC--CC-CHHHHHHHHHHHHHHHHC
Confidence 5554 24 678888888877665443
No 45
>PLN02993 lupeol synthase
Probab=66.84 E-value=1.5e+02 Score=32.76 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=53.5
Q ss_pred CCCCcchHHHHHHHhcCCC------ChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHH
Q 014060 244 WGAANGLAGILQVLLHFPL------SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKAS 317 (431)
Q Consensus 244 ~G~aHG~aGI~~~L~~~~~------~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~ 317 (431)
...+.+++-++.+|..+.. .++..+.++++++|+.+.|.+ +|.|-.. -.++..+|+.-.+.+|..+.
T Consensus 560 ~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~-DGSW~G~------Wgv~y~YgT~~aL~aL~a~G 632 (763)
T PLN02993 560 REYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTP-DGSWYGN------WGICFIYATWFALGGLAAAG 632 (763)
T ss_pred CCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHhcCC-CCCcccc------cccccCcHHHHHHHHHHHcC
Confidence 3457788888877765431 133456799999999998876 8888532 23556678777777776555
Q ss_pred hhCCCCHHHHHHHHHHHHHHH
Q 014060 318 QVFPSDREFRDAAIEAGEVLW 338 (431)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~ 338 (431)
+... +. ..++++.+.+.
T Consensus 633 ~~~~-~~---~~IrrAv~fLl 649 (763)
T PLN02993 633 KTYN-DC---LAMRKGVHFLL 649 (763)
T ss_pred CCCC-Cc---HHHHHHHHHHH
Confidence 4333 32 34455555554
No 46
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=63.80 E-value=35 Score=35.09 Aligned_cols=74 Identities=16% Similarity=0.039 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCCCCCC--CCC-C----CCCC--ccccccHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 014060 43 PCETFLKAAVSLKDQVVEVTWRRGSGGGG--EPG-R----GMDP--TLYTGLLGTAFICLRSYELTGNQQELLLSAEIID 113 (431)
Q Consensus 43 ~~~~~l~~A~~i~~~l~~~~w~~~~~~~~--~~~-~----~~~~--~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l~ 113 (431)
.++.+|+.|+++||.|+... ..+.+.-. .+. . .... +.-...+...+-+.+|.++|+|++|.+.+.++.+
T Consensus 96 ~d~~lL~kA~~lad~Ll~aF-~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~ 174 (452)
T PF01532_consen 96 GDPILLSKAVELADRLLPAF-DTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYD 174 (452)
T ss_dssp HHHHHHHHHHHHHHHHGGGG-SSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhc-cCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHH
Confidence 46789999999999999753 33321000 000 0 0000 1112334455778999999999999999998888
Q ss_pred HHHH
Q 014060 114 TCAS 117 (431)
Q Consensus 114 ~~~~ 117 (431)
.+.+
T Consensus 175 ~l~~ 178 (452)
T PF01532_consen 175 ALWR 178 (452)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8776
No 47
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=61.19 E-value=52 Score=32.92 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=56.4
Q ss_pred cCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCCCCCCc----cccchhh--------------HHHHHHHHHHH
Q 014060 304 HGATGVAITLCKASQVFPSDREFRDAAIEAGEVLWKNGLVKKVG----LADGAAG--------------NAYAFLSLYRL 365 (431)
Q Consensus 304 hG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----LCHG~aG--------------~~~~Ll~l~~~ 365 (431)
=|+.=|+.+|+.+.+..+ ++.|.+++..+++.|+++.+....+ |-=|..| .-.+|-.+++.
T Consensus 116 DGDl~IA~ALl~A~~~W~-~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa~~ 194 (376)
T PRK11097 116 DADLWIAYSLLEAGRLWK-EPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFARF 194 (376)
T ss_pred hHHHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHHHh
Confidence 456668999999999999 9999999999998887765432221 3333333 12345556777
Q ss_pred hCCchHHHHHHHHHHHHHH
Q 014060 366 TGETIYVERANAFSSFLYH 384 (431)
Q Consensus 366 t~~~~~~~~a~~~~~~~~~ 384 (431)
+++..|.+.+....+.+.+
T Consensus 195 ~~~~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 195 LPGGPWAALAATNARLLLE 213 (376)
T ss_pred cCCchHHHHHHHHHHHHHH
Confidence 8898999888776665544
No 48
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=56.15 E-value=1.2e+02 Score=30.39 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC--CCcccccccCchHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHH-
Q 014060 263 SEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNP--RDKLVQWSHGATGVAITLCKASQVFPSDR--EFRDAAIEAGEVL- 337 (431)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~--~~~~~~WChG~~Gi~~~l~~~~~~~~~~~--~~~~~a~~~~~~~- 337 (431)
.+...+.+.-.++|+.+.....+|+|-....+. .-....=|++-+=.++++..+.+..+ .. ++.+.+....+..
T Consensus 73 ~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~-~~a~~~~~~a~~~l~~~~ 151 (388)
T COG2942 73 RGPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAATAGP-PRADELLDEALDVLERRF 151 (388)
T ss_pred CccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHH
Confidence 455788899999999876665578874433221 11123357777777777777666655 33 5666666666543
Q ss_pred HHcC--CC----CC---Ccccc-chhhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh
Q 014060 338 WKNG--LV----KK---VGLAD-GAAGNAYAFLSLYRLTGETIYVERANAFSSFLYHNA 386 (431)
Q Consensus 338 ~~~g--~~----~~---~~LCH-G~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~~~~ 386 (431)
|+.. +. .+ ..+|- =.+=..++||-.|..+++..|+++|.++++.+++++
T Consensus 152 ~~~~~pl~~~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf 210 (388)
T COG2942 152 WREEHPLGGFEEDNPGSAPLGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRF 210 (388)
T ss_pred hhhcCCcccccccCCCCCccCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Confidence 5443 21 11 22210 012256788889999999999999999999888764
No 49
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=52.61 E-value=69 Score=31.19 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=59.6
Q ss_pred cccCchHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHHHHcCC-----C-------------CCCccccchhhHHHHHHHH
Q 014060 302 WSHGATGVAIT-LCKASQVFPSDREFRDAAIEAGEVLWKNGL-----V-------------KKVGLADGAAGNAYAFLSL 362 (431)
Q Consensus 302 WChG~~Gi~~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~-----~-------------~~~~LCHG~aG~~~~Ll~l 362 (431)
-|.--.|.++. +..+.+.++ ++-+.+.|+++.+.+|++.- . +..|+--|+-.--..+|++
T Consensus 182 tctac~gtlilefaals~~tg-~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lka 260 (587)
T KOG2430|consen 182 TCTACAGTLILEFAALSRFTG-APIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKA 260 (587)
T ss_pred chhhccchhhhhHHHHhhccC-ChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHH
Confidence 35444555544 445566788 99999999999999997531 1 1245656666666788889
Q ss_pred HHHhCCchHHHHHHHHHHHHHHhh
Q 014060 363 YRLTGETIYVERANAFSSFLYHNA 386 (431)
Q Consensus 363 ~~~t~~~~~~~~a~~~~~~~~~~~ 386 (431)
|-..||..|++|-.+-.+.+.+++
T Consensus 261 yillgddsfldrfn~hydai~ryi 284 (587)
T KOG2430|consen 261 YILLGDDSFLDRFNKHYDAIKRYI 284 (587)
T ss_pred hheeccHHHHHHHHHHHHHHHHHh
Confidence 999999999999877666555543
No 50
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=50.28 E-value=1.8e+02 Score=28.33 Aligned_cols=102 Identities=24% Similarity=0.254 Sum_probs=53.1
Q ss_pred HHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchH-HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHcCC------
Q 014060 270 VKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATG-VAITLCKASQVFPSDREFRDAAIEAGEVLWKNGL------ 342 (431)
Q Consensus 270 i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~G-i~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~g~------ 342 (431)
|+++++|+.+.+.+ +|.|+... .... ..+++. +....+..+++.+.++++.+.+.+...
T Consensus 1 ~~~~~~~L~~~Q~~-dG~W~~~~------------~~~~~Ta~~~~-al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~ 66 (348)
T cd02889 1 IRRALDFLLSLQAP-DGHWPGEY------------SQVWDTALALQ-ALLEAGLAPEFDPALKKALEWLLKSQIRDNPDD 66 (348)
T ss_pred CchHHHHHHHhccC-CCCccccC------------CchHHHHHHHH-HHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCc
Confidence 45789999998876 89996421 1111 122222 222233124566777777777765542
Q ss_pred -------CCCC-----ccccc------hhhHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHh
Q 014060 343 -------VKKV-----GLADG------AAGNAYAFLSLYRLTG--ETIYVERANAFSSFLYHN 385 (431)
Q Consensus 343 -------~~~~-----~LCHG------~aG~~~~Ll~l~~~t~--~~~~~~~a~~~~~~~~~~ 385 (431)
..+- ..++| ++-++.+|..+....+ +..+.+.+.+..+++++.
T Consensus 67 ~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~ 129 (348)
T cd02889 67 WKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSM 129 (348)
T ss_pred hhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHh
Confidence 1111 12222 2234445554444432 345566667777777764
No 51
>PLN03012 Camelliol C synthase
Probab=48.36 E-value=57 Score=35.79 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhhhhCCCC--CchhhHHHHHHHHHHcchhccccCCCCCCcceeeccccCCCCcchHHHHHHHhcCCCCh
Q 014060 187 RAGFLWAALFVNKHLGAGT--LPNELLMPIVDAVLAGGRAGATANTACPLMYRWHGTRYWGAANGLAGILQVLLHFPLSE 264 (431)
Q Consensus 187 ~aG~i~~Ll~l~~~~~~~~--~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~w~~~~~~G~aHG~aGI~~~L~~~~~~~ 264 (431)
++-++-+|..+.+..++.. -.+..+++.++.|...-+. .-.|.+.--+-+..|++-.+.+|.......
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~----------DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~ 635 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQML----------DGSWYGNWGICFTYGTWFALAGLAAAGKTF 635 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCC----------CCCCcccccccCCcHHHHHHHHHHHhCccC
Confidence 5666777777666543311 0134566666666542211 123544322334457777777777654321
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCC
Q 014060 265 EDAEDVKGTLRYMMSNRFPQSGNYPVS 291 (431)
Q Consensus 265 ~~~~~i~~~l~~~~~~~~~~~gnw~~~ 291 (431)
.-.+.|+++++|+++.|.+ +|.|--+
T Consensus 636 ~~~~~Irrav~fLls~Q~~-DGGWGEs 661 (759)
T PLN03012 636 NDCEAIRKGVHFLLAAQKD-NGGWGES 661 (759)
T ss_pred CCcHHHHHHHHHHHHhcCC-CCCcCCC
Confidence 2236799999999998876 8999543
No 52
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=46.01 E-value=18 Score=23.70 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCccccccc
Q 014060 269 DVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSH 304 (431)
Q Consensus 269 ~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WCh 304 (431)
.++++++|+++.+.+ +|.|....+...+...+||.
T Consensus 2 d~~~~~~~l~~~Q~~-dGGf~~~~~~~~d~~~t~~~ 36 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNP-DGGFGGRPGGESDTCYTYCA 36 (44)
T ss_dssp HHHHHHHHHHHTBBT-TSSBBSSTTSSBBHHHHHHH
T ss_pred CHHHHHHHHHHHCCC-CCCCCCCCCCCCChHHHHHH
Confidence 367889999998875 88886544333333445553
No 53
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=39.70 E-value=39 Score=30.27 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=26.4
Q ss_pred ccccchhhHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 014060 347 GLADGAAGNAYAFLSLYRLTGETIYVERANAFSSFLY 383 (431)
Q Consensus 347 ~LCHG~aG~~~~Ll~l~~~t~~~~~~~~a~~~~~~~~ 383 (431)
++|-|.+ +-+|.++|+.|+|++|++.|++..+...
T Consensus 29 amaQG~a--~s~l~RAy~~t~d~~Yl~aA~~al~~f~ 63 (189)
T PF06662_consen 29 AMAQGQA--ISVLARAYQLTGDEKYLDAAKKALNSFK 63 (189)
T ss_pred HHHHHHH--HHHHHHHHHhHCCHHHHHHHHHHHHHhc
Confidence 4444443 4567899999999999999998776543
No 54
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=38.69 E-value=1.5e+02 Score=30.25 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHhccCCC--------CC-----CCCCCC-CCCCCcccccccCchH------HHHHHHHHHhhCCC
Q 014060 263 SEEDAEDVKGTLRYMMSNRFPQ--------SG-----NYPVSE-GNPRDKLVQWSHGATG------VAITLCKASQVFPS 322 (431)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~~--------~g-----nw~~~~-~~~~~~~~~WChG~~G------i~~~l~~~~~~~~~ 322 (431)
-|++++.++=.++|+++.+.+. ++ -|.... ....+....+.-+.|| ++-++..++++++.
T Consensus 93 ~~dllde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~ 172 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKD 172 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhccc
Confidence 3677888888999999877541 11 243321 0111111223333322 23345566777763
Q ss_pred -CHHHHHHHHHHHHHHHHcCC--C----CC------Cccccchhh--HHHHHHHHHHHhCCchHHHHHHHHH
Q 014060 323 -DREFRDAAIEAGEVLWKNGL--V----KK------VGLADGAAG--NAYAFLSLYRLTGETIYVERANAFS 379 (431)
Q Consensus 323 -~~~~~~~a~~~~~~~~~~g~--~----~~------~~LCHG~aG--~~~~Ll~l~~~t~~~~~~~~a~~~~ 379 (431)
|+++-+.+.+.++.+|.... . .+ .-.|-..-. ...+-..||+.|++.+|++.+++..
T Consensus 173 ~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~~ 244 (444)
T PF00759_consen 173 FDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEYY 244 (444)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHhH
Confidence 68888887777777765321 0 00 111110000 3556678999999999998777643
No 55
>PLN02266 endoglucanase
Probab=38.52 E-value=3.4e+02 Score=28.45 Aligned_cols=116 Identities=12% Similarity=0.138 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHhccCC--------CCCCCCCC---CCCC-CCcccccc--cCchH------HHHHHHHHHhhCCC
Q 014060 263 SEEDAEDVKGTLRYMMSNRFP--------QSGNYPVS---EGNP-RDKLVQWS--HGATG------VAITLCKASQVFPS 322 (431)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~--------~~gnw~~~---~~~~-~~~~~~WC--hG~~G------i~~~l~~~~~~~~~ 322 (431)
-|.+++.++=.++|+++.+.+ .+++|... +++. ...+..+- -..|| .+-++..++.++++
T Consensus 129 ~pd~Ldelkw~~D~llk~~~~~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk~ 208 (510)
T PLN02266 129 LQNAKDAIRWATDYLLKATAHPDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFRK 208 (510)
T ss_pred cHHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 467788888899999875532 12222221 1111 11122111 11122 34456667778864
Q ss_pred -CHHHHHHHHHHHHHHHHcCCC-C-CC---------ccccchhh----HHHHHHHHHHHhCCchHHHHHHHH
Q 014060 323 -DREFRDAAIEAGEVLWKNGLV-K-KV---------GLADGAAG----NAYAFLSLYRLTGETIYVERANAF 378 (431)
Q Consensus 323 -~~~~~~~a~~~~~~~~~~g~~-~-~~---------~LCHG~aG----~~~~Ll~l~~~t~~~~~~~~a~~~ 378 (431)
|++|-+.+.+.++.+|+...- + .. ..-...+| ...+-..||+.|+|++|++.+...
T Consensus 209 ~D~~yA~~~L~~Ak~ly~fa~~~~g~y~~~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 209 SDPTYSKLLVRRAIRVFQFADKYRGAYSNGLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 788888888888777654310 0 01 11111122 134556799999999999877653
No 56
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=36.68 E-value=45 Score=29.89 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=28.0
Q ss_pred CCccccccH-HHH-HHHHHHHhhhCCHHHHHHHHHHHHHHHH
Q 014060 78 DPTLYTGLL-GTA-FICLRSYELTGNQQELLLSAEIIDTCAS 117 (431)
Q Consensus 78 ~~~LY~G~~-Gia-l~l~~L~~~t~~~~~~~~a~~~l~~~~~ 117 (431)
+.+=|++++ |.+ -+|.++|++|+|++|++.|.+.++....
T Consensus 23 ~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~ 64 (189)
T PF06662_consen 23 SPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKV 64 (189)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcC
Confidence 344454432 222 3467999999999999999999886544
No 57
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=34.98 E-value=42 Score=34.52 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=49.9
Q ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHHH---H--cCCC------CC--------Cccc-cchhhHHHHHHHHHHHhC
Q 014060 310 AITLCKASQVF--PSDREFRDAAIEAGEVLW---K--NGLV------KK--------VGLA-DGAAGNAYAFLSLYRLTG 367 (431)
Q Consensus 310 ~~~l~~~~~~~--~~~~~~~~~a~~~~~~~~---~--~g~~------~~--------~~LC-HG~aG~~~~Ll~l~~~t~ 367 (431)
+=+|+.++... + ++.+++.|...++.+. . .|+. +. ..-| ...+....=|.++++.|+
T Consensus 83 lGgLLSay~ls~~~-d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 83 LGGLLSAYDLSGEG-DPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHhcc-chHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 33455677777 7 9999999999998762 2 1321 10 1124 333334555778999999
Q ss_pred CchHHHHHHHHHHHHHH
Q 014060 368 ETIYVERANAFSSFLYH 384 (431)
Q Consensus 368 ~~~~~~~a~~~~~~~~~ 384 (431)
|++|.+.|+++.+.+.+
T Consensus 162 d~kY~~~a~~~~~~l~~ 178 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWR 178 (452)
T ss_dssp -THHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999888766
No 58
>PLN03012 Camelliol C synthase
Probab=33.81 E-value=1.5e+02 Score=32.64 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=58.3
Q ss_pred ccccccchHHHHHHHHHhhhhCCCCCchhhHHHHHHHHHHcchhccccCCCCCCcce--ee---ccccCCCCcc---hHH
Q 014060 181 YDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAVLAGGRAGATANTACPLMYR--WH---GTRYWGAANG---LAG 252 (431)
Q Consensus 181 ~D~l~G~aG~i~~Ll~l~~~~~~~~~~~~~i~~~~~~il~~~~~~~~~~~~~~~~~~--w~---~~~~~G~aHG---~aG 252 (431)
..+++|++-.+.+|..+.+...+ ...+++.++.|+..-+. + -.|. |. .+.|++.--| +..
T Consensus 615 v~y~YgT~~aL~aL~a~g~~~~~----~~~Irrav~fLls~Q~~--D------GGWGEs~~Sc~~~~y~~~~~~~S~~~q 682 (759)
T PLN03012 615 ICFTYGTWFALAGLAAAGKTFND----CEAIRKGVHFLLAAQKD--N------GGWGESYLSCPKKIYIAQEGEISNLVQ 682 (759)
T ss_pred ccCCcHHHHHHHHHHHhCccCCC----cHHHHHHHHHHHHhcCC--C------CCcCCCCCCCCCccccCCCCCCCcHHH
Confidence 45677888888888776554443 36888899888764221 1 0121 11 2234443211 366
Q ss_pred HHHHHhcC---CCChHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 014060 253 ILQVLLHF---PLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSE 292 (431)
Q Consensus 253 I~~~L~~~---~~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~ 292 (431)
.++||+-+ ......-..++++++|+++.|.+ +|.||...
T Consensus 683 TaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~-dG~W~q~~ 724 (759)
T PLN03012 683 TAWALMGLIHAGQAERDPIPLHRAAKLIINSQLE-NGDFPQQE 724 (759)
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccC-CCCCCCce
Confidence 67776643 22111123689999999997765 89997644
No 59
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=33.55 E-value=1e+02 Score=31.14 Aligned_cols=76 Identities=14% Similarity=0.050 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhccCCC---CCCCCC-----CCC--CCCccccccHHHHHHHHHHHhhhCCHHHHHHHHHHH
Q 014060 43 PCETFLKAAVSLKDQVVEVTWRRGS---GGGGEP-----GRG--MDPTLYTGLLGTAFICLRSYELTGNQQELLLSAEII 112 (431)
Q Consensus 43 ~~~~~l~~A~~i~~~l~~~~w~~~~---~~~~~~-----~~~--~~~~LY~G~~Gial~l~~L~~~t~~~~~~~~a~~~l 112 (431)
..+-||+.|..++|+|+... -++. .+|-+. ..+ .+.+--.=.+-|=+-|-+|.++|||++|.+.+.+..
T Consensus 192 g~~~~L~kA~dlgdrLl~AF-~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltgd~kY~~~a~kv~ 270 (546)
T KOG2431|consen 192 GDEMFLNKAEDLGDRLLPAF-SSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTGDPKYEELAEKVT 270 (546)
T ss_pred cchhHHHHHHHHHHHHHHhh-cCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcCCchHHHHHHHHH
Confidence 45588999999999999765 3332 111110 111 111111122334455788999999999999999998
Q ss_pred HHHHHHh
Q 014060 113 DTCASVV 119 (431)
Q Consensus 113 ~~~~~~~ 119 (431)
+.+-..-
T Consensus 271 ehih~~~ 277 (546)
T KOG2431|consen 271 EHIHGLG 277 (546)
T ss_pred HHHhccC
Confidence 8876543
No 60
>PLN02613 endoglucanase
Probab=32.68 E-value=3.9e+02 Score=27.89 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHhccCC-------------CCCCCCCCCCCCCCcccccc----cCc---hHHHHHHHHHHhhCCC
Q 014060 263 SEEDAEDVKGTLRYMMSNRFP-------------QSGNYPVSEGNPRDKLVQWS----HGA---TGVAITLCKASQVFPS 322 (431)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~-------------~~gnw~~~~~~~~~~~~~WC----hG~---~Gi~~~l~~~~~~~~~ 322 (431)
.+.+++.++=.++|+++.+.. .+..|........+.....+ -|+ ...+-++..+++++++
T Consensus 111 ~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk~ 190 (498)
T PLN02613 111 LGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADHQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFKD 190 (498)
T ss_pred chHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCccccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhccc
Confidence 466788888889999876422 01235221111111111111 111 1234446667788874
Q ss_pred -CHHHHHHHHHHHHHHHHcCCC-C-----CCccccchhh----HHHHHHHHHHHhCCchHHHHHHH
Q 014060 323 -DREFRDAAIEAGEVLWKNGLV-K-----KVGLADGAAG----NAYAFLSLYRLTGETIYVERANA 377 (431)
Q Consensus 323 -~~~~~~~a~~~~~~~~~~g~~-~-----~~~LCHG~aG----~~~~Ll~l~~~t~~~~~~~~a~~ 377 (431)
|+.|-+.+.+.++.+|+...- + ....-.+.+| ...+-..||+.|++++|++.+..
T Consensus 191 ~D~~yA~~~L~~Ak~ly~~a~~~~g~y~~~~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~ 256 (498)
T PLN02613 191 VDSSYSSKLLNHARSLFEFADKYRGSYQASCPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVIS 256 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 788888888888777654311 0 1011111122 24455679999999999987654
No 61
>PLN02345 endoglucanase
Probab=30.14 E-value=4.5e+02 Score=27.27 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHcCCC------CC-Cccc--cchhh----HHHHHHHHHHHhCCchHHHH
Q 014060 309 VAITLCKASQVFPS-DREFRDAAIEAGEVLWKNGLV------KK-VGLA--DGAAG----NAYAFLSLYRLTGETIYVER 374 (431)
Q Consensus 309 i~~~l~~~~~~~~~-~~~~~~~a~~~~~~~~~~g~~------~~-~~LC--HG~aG----~~~~Ll~l~~~t~~~~~~~~ 374 (431)
++-++..++.++++ |+.|-+.+.+.++.+|+...- .. +.-| -...| ...+-..||+.|+|..|++.
T Consensus 147 ~AAAlA~as~vfk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DEl~WAAawLy~ATgd~~Yl~~ 226 (469)
T PLN02345 147 TAAAMAAASLVFKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDELLWAASWLYHATGDKTYLAY 226 (469)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccHHHHHHHHHHHHhCCHHHHHH
Confidence 45556677788874 777777777777766653210 00 1101 01122 34555679999999999987
Q ss_pred HH
Q 014060 375 AN 376 (431)
Q Consensus 375 a~ 376 (431)
+.
T Consensus 227 ~~ 228 (469)
T PLN02345 227 VT 228 (469)
T ss_pred HH
Confidence 74
No 62
>PLN02909 Endoglucanase
Probab=28.96 E-value=6e+02 Score=26.47 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHHHhccCC--------CCCCCCCC---CCCC-CCccccc-c----cCc---hHHHHHHHHHHhhCCC
Q 014060 263 SEEDAEDVKGTLRYMMSNRFP--------QSGNYPVS---EGNP-RDKLVQW-S----HGA---TGVAITLCKASQVFPS 322 (431)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~--------~~gnw~~~---~~~~-~~~~~~W-C----hG~---~Gi~~~l~~~~~~~~~ 322 (431)
-|.+++.++=.++|+++.+.+ .+++|.+. +++. ...+..+ + -|+ .-.+-++..++.++++
T Consensus 119 ~~d~ldeikw~~D~llk~~~~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vfk~ 198 (486)
T PLN02909 119 LENVRAAIRWGTDYFLKAASRKNRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVFRH 198 (486)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhhcc
Confidence 467788888899999875432 12223221 1111 0111111 1 122 1223345666777764
Q ss_pred -CHHHHHHHHHHHHHHHHcC-----CCCC-Cccccchhh----HHHHHHHHHHHhCCchHHHHHHH
Q 014060 323 -DREFRDAAIEAGEVLWKNG-----LVKK-VGLADGAAG----NAYAFLSLYRLTGETIYVERANA 377 (431)
Q Consensus 323 -~~~~~~~a~~~~~~~~~~g-----~~~~-~~LCHG~aG----~~~~Ll~l~~~t~~~~~~~~a~~ 377 (431)
|+.|-+.+.+.++.+|+.. .... ..+-...+| ...+-..||+.|++..|++.+..
T Consensus 199 ~D~~yA~~lL~~Ak~~y~fA~~~~g~y~~~~~~y~s~s~y~DEl~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 199 VDHKYSRRLLNKAKLLFKFAKAHKGTYDGECPFYCSYSGYNDELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCccccCCCcchHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 7888777777777665532 1111 111112233 33444578999999999986653
No 63
>PLN02420 endoglucanase
Probab=28.32 E-value=4.8e+02 Score=27.46 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCC-------------CCCCCCCCCCCcccc-cc----cCc---hHHHHHHHHHHhhCC
Q 014060 263 SEEDAEDVKGTLRYMMSNRFPQSG-------------NYPVSEGNPRDKLVQ-WS----HGA---TGVAITLCKASQVFP 321 (431)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~~~g-------------nw~~~~~~~~~~~~~-WC----hG~---~Gi~~~l~~~~~~~~ 321 (431)
.|.+++.++=.++|+++.+...+. .|...... ...+.. .+ -|+ ...+-++..++.+++
T Consensus 126 ~~d~Ldeikw~lD~llk~~~~~~~~~~qvGdg~~DH~~w~~Pe~~-~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~vfk 204 (525)
T PLN02420 126 LSHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDM-TTSRRAFKIDENNPGSDIAGETAAAMAAASIVFR 204 (525)
T ss_pred cHHHHHHHHHHHHHHHHhCcCCCceEEeeCCCCcccccccChhhc-cccCceEEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 467788888899999876532111 13111100 111111 11 222 223344666778887
Q ss_pred C-CHHHHHHHHHHHHHHHHcCCC-C-CCccc----cc----hhh----HHHHHHHHHHHhCCchHHHHHHHH
Q 014060 322 S-DREFRDAAIEAGEVLWKNGLV-K-KVGLA----DG----AAG----NAYAFLSLYRLTGETIYVERANAF 378 (431)
Q Consensus 322 ~-~~~~~~~a~~~~~~~~~~g~~-~-~~~LC----HG----~aG----~~~~Ll~l~~~t~~~~~~~~a~~~ 378 (431)
+ |+.|-+.+.+.++.+|+.... + .+.-+ +| .+| ...+-..||+.|+|..|++.+.+.
T Consensus 205 ~~D~~YA~~~L~~Ak~ly~fA~~~~g~y~~~~~~~~g~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 205 STNPHYSHLLLHHAQQLFEFGDKYRGKYDESLKVVKSYYASVSGYMDELLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCccCCCCcccCCCCCCcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 788888888888777654321 0 01111 11 122 334455789999999999877653
No 64
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=26.18 E-value=6e+02 Score=24.51 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=19.9
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHhccC
Q 014060 255 QVLLHFPLSEEDAEDVKGTLRYMMSNRF 282 (431)
Q Consensus 255 ~~L~~~~~~~~~~~~i~~~l~~~~~~~~ 282 (431)
.+|......+++.+.++++++|+.+.+.
T Consensus 33 ~al~~~g~~~~~~~~~~ka~~~l~~~q~ 60 (348)
T cd02889 33 QALLEAGLAPEFDPALKKALEWLLKSQI 60 (348)
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHhcCC
Confidence 3444444335677889999999999773
No 65
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=25.54 E-value=2.2e+02 Score=29.90 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCC-----CCCCCCCCCCCCccccccHHHH-------HHHHHHHhhhCCHHHHHHHHHH
Q 014060 44 CETFLKAAVSLKDQVVEVTWRRGS-----GGGGEPGRGMDPTLYTGLLGTA-------FICLRSYELTGNQQELLLSAEI 111 (431)
Q Consensus 44 ~~~~l~~A~~i~~~l~~~~w~~~~-----~~~~~~~~~~~~~LY~G~~Gia-------l~l~~L~~~t~~~~~~~~a~~~ 111 (431)
++-|++.|.+|+|.|+.. |..+. ..+.+.....+.+--+|-+.|. +-+.+|.+.|+++.|.+.+..+
T Consensus 280 e~~f~~kA~~igdkLLpA-fntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P~~~ekv~~I 358 (625)
T KOG2204|consen 280 EEMFLEKAPEIGDKLLPA-FNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNPTFAEKVVKI 358 (625)
T ss_pred cHHHHHhhHHHHHHhhhc-ccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCchHHHHHHHH
Q ss_pred HHHHHHHhhccCCcccccccchH
Q 014060 112 IDTCASVVRDSTRHVTFLCGRGG 134 (431)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~G~~G 134 (431)
-..+........-.+-+++=.+|
T Consensus 359 Rk~l~k~ekP~GLypnYinP~sg 381 (625)
T KOG2204|consen 359 RKVLNKSEKPHGLYPNYINPSSG 381 (625)
T ss_pred HHHHHhhcCCCCCCcccccCCCC
No 66
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=23.24 E-value=9.7e+02 Score=25.89 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=27.5
Q ss_pred CCcchHHHHHHHhcCCCChHHHHHHHHHHHHHHhccCCCCCCCCC
Q 014060 246 AANGLAGILQVLLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPV 290 (431)
Q Consensus 246 ~aHG~aGI~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~~gnw~~ 290 (431)
+..|++=.+.+|.....+. ..+.++++++|+++.|.+ +|.|..
T Consensus 504 ~~Y~T~~al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~-DGgWg~ 546 (634)
T TIGR03463 504 FTYGTFHGVMGLRAAGASP-DDMALQRAAAWLRSYQRA-DGGWGE 546 (634)
T ss_pred CcHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCC-CCCccC
Confidence 3445554555565543221 136789999999998766 899954
No 67
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=23.13 E-value=54 Score=16.40 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=10.0
Q ss_pred CCcccccccCCCcCCC
Q 014060 1 MSSVKFASQDSHAHED 16 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (431)
|.+|.|.....|.|.|
T Consensus 1 m~rvqfk~hhhhhhpd 16 (16)
T PF08047_consen 1 MNRVQFKHHHHHHHPD 16 (16)
T ss_pred CceeEecccccccCCC
Confidence 6778887655555543
No 68
>PLN02340 endoglucanase
Probab=23.06 E-value=8.8e+02 Score=26.14 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHHHHhccCCC-------------CCCCCCCCCCCCCccccc-----ccCc---hHHHHHHHHHHhhCC
Q 014060 263 SEEDAEDVKGTLRYMMSNRFPQ-------------SGNYPVSEGNPRDKLVQW-----SHGA---TGVAITLCKASQVFP 321 (431)
Q Consensus 263 ~~~~~~~i~~~l~~~~~~~~~~-------------~gnw~~~~~~~~~~~~~W-----ChG~---~Gi~~~l~~~~~~~~ 321 (431)
-+.+++.++=.++|+++.+.+. +..|..... ....+..+ +-|+ ..++-++..++.++.
T Consensus 115 ~~~~ldeirw~~Dyllk~~~~~~~~~~qVGdg~~DH~~W~~PE~-~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk 193 (614)
T PLN02340 115 MQRTLWAIRWGTDYFIKAHTQPNVLWGQVGDGDSDHYCWERAED-MTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFK 193 (614)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCcccccCCChhh-cCCcCceeecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 3667788888899988754321 113532110 00011111 1121 234455666777776
Q ss_pred C-CHHHHHHHHHHHHHHHHcCCCCCCccc----------cchhh----HHHHHHHHHHHhCCchHHHHHHHHH
Q 014060 322 S-DREFRDAAIEAGEVLWKNGLVKKVGLA----------DGAAG----NAYAFLSLYRLTGETIYVERANAFS 379 (431)
Q Consensus 322 ~-~~~~~~~a~~~~~~~~~~g~~~~~~LC----------HG~aG----~~~~Ll~l~~~t~~~~~~~~a~~~~ 379 (431)
. |+.|-+.+.+.++.+|+... +..+.+ -..+| ...+-..||+.|+|..|++.+....
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~-~~~g~y~~s~~~a~~~Y~ss~~~DEl~WAAawLy~ATgd~~Yl~~~~~~~ 265 (614)
T PLN02340 194 PYNSSYSDLLLVHAKQLFSFAD-KFRGLYDDSIQNAKKFYTSSGYSDELLWAAAWLYRATGDEYYLKYVVDNA 265 (614)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-hCCCCccCCCCccccCCCCCCcchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 78888888887777765421 001110 11233 2344457899999999998876543
No 69
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=22.84 E-value=6.7e+02 Score=27.10 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred HhcCCCChHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCcccccccCchHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 014060 257 LLHFPLSEEDAEDVKGTLRYMMSNRFPQSGNYPVSEGNPRDKLVQWSHGATGVAITLCKASQVFPSDREFRDAAIEAGEV 336 (431)
Q Consensus 257 L~~~~~~~~~~~~i~~~l~~~~~~~~~~~gnw~~~~~~~~~~~~~WChG~~Gi~~~l~~~~~~~~~~~~~~~~a~~~~~~ 336 (431)
++..+..+...+.++++.+++.+++.+ +|+| .+-.-|..=+.--...+..+++ .+. .+..+++.+.
T Consensus 5 ~~~~~~~~~~~~a~~~~~~~l~~~Q~~-dG~W-----------~~e~~~~~~~~a~~i~~~~~~g-~~~-~~~~~~~~~~ 70 (635)
T TIGR01507 5 LVEAPATARTVEAIDRAVDYLLSCQKD-EGYW-----------WGELESNVTIEAEYVLLCHILD-RVD-RDRMEKIRNY 70 (635)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHhccC-CCcc-----------ccccCCcchhcHHHHHHHHHHC-CCc-HHHHHHHHHH
Q ss_pred HHHcCCCCC-CccccchhhHHHHHHHHHHHh------CCchHHHHHHHHH
Q 014060 337 LWKNGLVKK-VGLADGAAGNAYAFLSLYRLT------GETIYVERANAFS 379 (431)
Q Consensus 337 ~~~~g~~~~-~~LCHG~aG~~~~Ll~l~~~t------~~~~~~~~a~~~~ 379 (431)
+.+.-.... -++.+|..|+...=...|-.. .+..-..+|+++.
T Consensus 71 l~~~Q~~DGgWg~~~~~~~~~~~Tv~~Y~aLrl~G~~~~~~~m~rAr~~I 120 (635)
T TIGR01507 71 LLHEQREDGTWALYPGGPGDLSTTVEAYVALKYIGMSRDEPPMQKALRFI 120 (635)
T ss_pred HHHhccCCCCccCccCCCcchhHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Done!