Query 014061
Match_columns 431
No_of_seqs 185 out of 1883
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 2E-87 4.2E-92 717.8 40.6 384 46-430 52-438 (600)
2 PRK12852 groEL chaperonin GroE 100.0 3.8E-85 8.2E-90 696.5 42.4 383 48-430 1-384 (545)
3 PRK12849 groEL chaperonin GroE 100.0 5.6E-85 1.2E-89 693.6 42.6 382 49-430 1-383 (542)
4 PRK00013 groEL chaperonin GroE 100.0 6.4E-85 1.4E-89 693.2 42.8 382 49-430 1-383 (542)
5 PTZ00114 Heat shock protein 60 100.0 7.6E-85 1.6E-89 695.2 43.4 384 47-430 11-396 (555)
6 TIGR02348 GroEL chaperonin Gro 100.0 9.7E-85 2.1E-89 690.5 42.4 380 51-430 2-382 (524)
7 PRK14104 chaperonin GroEL; Pro 100.0 1.2E-84 2.6E-89 691.6 41.7 381 50-430 3-384 (546)
8 PRK12850 groEL chaperonin GroE 100.0 1.9E-84 4.2E-89 690.2 42.2 382 49-430 2-384 (544)
9 PRK12851 groEL chaperonin GroE 100.0 7.4E-84 1.6E-88 685.4 41.7 382 49-430 2-384 (541)
10 CHL00093 groEL chaperonin GroE 100.0 1.4E-83 3E-88 682.3 40.9 381 49-430 1-383 (529)
11 cd03344 GroEL GroEL_like type 100.0 4.2E-83 9.1E-88 677.1 43.1 380 51-430 1-381 (520)
12 KOG0356 Mitochondrial chaperon 100.0 7.8E-84 1.7E-88 655.4 28.9 385 45-430 12-398 (550)
13 COG0459 GroL Chaperonin GroEL 100.0 4.7E-65 1E-69 536.3 15.2 353 49-430 2-368 (524)
14 TIGR02339 thermosome_arch ther 100.0 1.3E-60 2.8E-65 506.7 34.1 325 51-403 9-394 (519)
15 cd03343 cpn60 cpn60 chaperonin 100.0 2E-60 4.4E-65 505.1 33.8 324 52-403 9-391 (517)
16 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.2E-60 2.7E-65 502.5 27.9 317 52-402 6-356 (484)
17 cd03335 TCP1_alpha TCP-1 (CTT 100.0 5.6E-60 1.2E-64 502.5 32.8 326 54-402 4-391 (527)
18 TIGR02347 chap_CCT_zeta T-comp 100.0 2E-59 4.3E-64 497.9 34.9 324 52-403 10-400 (531)
19 TIGR02340 chap_CCT_alpha T-com 100.0 2.7E-59 5.8E-64 498.1 33.8 329 52-403 6-396 (536)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.9E-59 4.1E-64 497.4 31.7 329 53-403 3-390 (515)
21 TIGR02343 chap_CCT_epsi T-comp 100.0 4.5E-59 9.8E-64 495.6 34.4 324 52-403 21-405 (532)
22 cd03339 TCP1_epsilon TCP-1 (CT 100.0 4.6E-59 1E-63 495.4 33.9 324 52-403 17-401 (526)
23 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1E-58 2.3E-63 492.4 34.4 326 53-403 11-393 (522)
24 TIGR02342 chap_CCT_delta T-com 100.0 1.7E-58 3.7E-63 490.0 31.8 330 52-403 3-391 (517)
25 TIGR02344 chap_CCT_gamma T-com 100.0 3.2E-58 7E-63 488.9 32.8 323 52-402 10-394 (525)
26 TIGR02345 chap_CCT_eta T-compl 100.0 7.8E-58 1.7E-62 485.5 33.3 326 52-403 12-394 (522)
27 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.7E-56 3.6E-61 474.8 35.6 322 52-402 7-387 (517)
28 TIGR02346 chap_CCT_theta T-com 100.0 3.5E-57 7.7E-62 481.0 29.9 321 53-403 12-392 (531)
29 PTZ00212 T-complex protein 1 s 100.0 1.8E-56 3.9E-61 476.0 34.4 323 52-403 16-400 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 8.4E-57 1.8E-61 473.1 30.2 306 52-402 10-353 (480)
31 cd00309 chaperonin_type_I_II c 100.0 6.2E-56 1.3E-60 465.0 33.5 307 52-403 2-340 (464)
32 TIGR02341 chap_CCT_beta T-comp 100.0 9.6E-55 2.1E-59 461.3 35.7 323 52-403 8-389 (519)
33 cd03341 TCP1_theta TCP-1 (CTT 100.0 3.7E-55 8E-60 459.8 31.4 304 56-403 6-344 (472)
34 KOG0361 Chaperonin complex com 100.0 9.4E-54 2E-58 418.4 22.7 326 51-401 13-395 (543)
35 KOG0358 Chaperonin complex com 100.0 2.7E-53 5.9E-58 414.6 20.1 330 51-403 19-408 (534)
36 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 1.4E-50 3.1E-55 425.3 26.8 305 70-402 1-358 (485)
37 KOG0360 Chaperonin complex com 100.0 1.4E-48 2.9E-53 390.4 20.8 327 51-400 12-399 (545)
38 KOG0363 Chaperonin complex com 100.0 4.3E-48 9.4E-53 376.6 22.7 320 53-401 13-391 (527)
39 KOG0362 Chaperonin complex com 100.0 1.2E-44 2.6E-49 364.2 26.7 314 55-401 23-393 (537)
40 KOG0364 Chaperonin complex com 100.0 1.8E-43 4E-48 350.8 16.9 327 51-405 12-397 (527)
41 KOG0359 Chaperonin complex com 100.0 5.6E-40 1.2E-44 325.7 10.6 301 57-386 16-362 (520)
42 KOG0357 Chaperonin complex com 100.0 4.5E-33 9.8E-38 269.4 10.0 246 34-402 4-268 (400)
43 cd03333 chaperonin_like chaper 99.9 1.6E-22 3.5E-27 190.7 17.8 174 188-402 2-203 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.8 3.4E-20 7.5E-25 181.0 18.7 179 200-402 19-247 (261)
45 KOG0230 Phosphatidylinositol-4 98.9 3.8E-09 8.3E-14 119.5 9.6 148 200-371 333-509 (1598)
46 COG0459 GroL Chaperonin GroEL 98.3 5.8E-06 1.3E-10 88.4 12.1 108 279-402 259-387 (524)
47 TIGR02345 chap_CCT_eta T-compl 92.7 0.0037 8E-08 67.2 -7.3 117 288-430 245-374 (522)
48 PRK14736 atpC F0F1 ATP synthas 68.0 24 0.00053 31.0 7.3 55 367-421 67-127 (133)
49 TIGR01216 ATP_synt_epsi ATP sy 38.1 1.6E+02 0.0036 25.4 7.5 37 383-419 87-123 (130)
50 COG4148 ModC ABC-type molybdat 34.5 37 0.0008 34.1 3.1 44 261-304 144-193 (352)
51 TIGR01166 cbiO cobalt transpor 33.2 43 0.00093 30.5 3.2 41 261-301 143-188 (190)
52 PF10805 DUF2730: Protein of u 31.2 79 0.0017 26.6 4.2 36 388-423 47-82 (106)
53 PRK09922 UDP-D-galactose:(gluc 30.5 5.5E+02 0.012 25.5 12.1 35 274-309 195-229 (359)
54 COG1121 ZnuC ABC-type Mn/Zn tr 30.2 56 0.0012 32.1 3.5 42 261-302 155-201 (254)
55 cd03232 ABC_PDR_domain2 The pl 29.1 75 0.0016 29.1 4.1 44 261-304 124-172 (192)
56 PF13768 VWA_3: von Willebrand 28.3 1.8E+02 0.0039 25.1 6.3 64 278-346 79-153 (155)
57 PF14681 UPRTase: Uracil phosp 28.0 3.5E+02 0.0076 25.3 8.5 53 261-313 119-174 (207)
58 PRK00571 atpC F0F1 ATP synthas 27.2 3.2E+02 0.0068 23.8 7.5 51 367-417 67-123 (135)
59 PRK00539 atpC F0F1 ATP synthas 27.0 3.4E+02 0.0074 23.7 7.7 50 367-416 67-122 (133)
60 CHL00063 atpE ATP synthase CF1 26.9 3.5E+02 0.0076 23.6 7.8 50 368-417 66-121 (134)
61 cd03213 ABCG_EPDR ABCG transpo 26.7 86 0.0019 28.8 4.1 45 261-305 127-176 (194)
62 cd03216 ABC_Carb_Monos_I This 25.5 61 0.0013 28.9 2.7 43 260-302 97-144 (163)
63 cd01461 vWA_interalpha_trypsin 25.1 2.3E+02 0.0049 24.6 6.4 19 330-348 140-158 (171)
64 PRK13600 putative ribosomal pr 24.4 3E+02 0.0065 22.3 6.3 29 281-309 20-48 (84)
65 cd03234 ABCG_White The White s 24.2 1E+02 0.0023 28.8 4.2 46 261-306 159-209 (226)
66 PF01113 DapB_N: Dihydrodipico 24.2 1.9E+02 0.0042 24.5 5.6 42 267-310 70-111 (124)
67 PRK13125 trpA tryptophan synth 24.1 99 0.0021 29.8 4.1 111 244-358 81-200 (244)
68 PRK13538 cytochrome c biogenes 24.0 81 0.0018 29.1 3.4 42 261-302 145-191 (204)
69 PRK13539 cytochrome c biogenes 23.9 81 0.0018 29.2 3.4 42 261-302 143-189 (207)
70 TIGR02673 FtsE cell division A 23.9 72 0.0016 29.5 3.0 42 261-302 153-199 (214)
71 TIGR00960 3a0501s02 Type II (G 23.8 70 0.0015 29.7 2.9 42 261-302 154-200 (216)
72 COG1712 Predicted dinucleotide 23.5 3.6E+02 0.0078 26.3 7.5 81 275-382 69-165 (255)
73 cd03218 ABC_YhbG The ABC trans 23.0 76 0.0017 29.7 3.0 42 261-302 149-195 (232)
74 TIGR03771 anch_rpt_ABC anchore 23.0 76 0.0016 29.8 3.0 43 260-302 128-175 (223)
75 PRK13543 cytochrome c biogenes 23.0 81 0.0018 29.3 3.2 43 260-302 152-199 (214)
76 PF10410 DnaB_bind: DnaB-helic 22.8 2.6E+02 0.0056 20.0 5.3 38 383-420 16-53 (59)
77 cd03235 ABC_Metallic_Cations A 22.7 75 0.0016 29.4 2.9 42 261-302 148-194 (213)
78 cd03262 ABC_HisP_GlnQ_permease 22.3 75 0.0016 29.3 2.8 42 261-302 151-197 (213)
79 PRK13446 atpC F0F1 ATP synthas 22.3 4.4E+02 0.0095 23.0 7.5 50 368-417 68-123 (136)
80 cd03219 ABC_Mj1267_LivG_branch 22.2 76 0.0017 29.8 2.9 42 261-302 159-205 (236)
81 TIGR01978 sufC FeS assembly AT 22.1 79 0.0017 29.8 3.0 42 261-302 160-206 (243)
82 cd03225 ABC_cobalt_CbiO_domain 21.5 81 0.0018 29.0 2.8 41 261-301 150-195 (211)
83 cd03226 ABC_cobalt_CbiO_domain 21.4 75 0.0016 29.2 2.6 42 261-302 142-188 (205)
84 cd03246 ABCC_Protease_Secretio 21.3 88 0.0019 28.0 3.0 41 261-301 112-157 (173)
85 cd03268 ABC_BcrA_bacitracin_re 21.1 86 0.0019 28.9 2.9 42 261-302 142-188 (208)
86 PRK09580 sufC cysteine desulfu 21.0 85 0.0018 29.7 2.9 42 260-301 160-206 (248)
87 cd03215 ABC_Carb_Monos_II This 20.8 1E+02 0.0022 27.8 3.3 41 261-301 120-165 (182)
88 TIGR03740 galliderm_ABC gallid 20.7 86 0.0019 29.2 2.9 42 261-302 140-186 (223)
89 cd01463 vWA_VGCC_like VWA Volt 20.7 2.6E+02 0.0057 25.3 6.0 23 326-348 161-185 (190)
90 PRK11264 putative amino-acid A 20.3 87 0.0019 29.7 2.8 42 261-302 160-206 (250)
91 PRK10619 histidine/lysine/argi 20.3 84 0.0018 30.1 2.7 42 261-302 168-214 (257)
92 TIGR02324 CP_lyasePhnL phospho 20.1 1E+02 0.0023 28.6 3.3 39 261-299 165-208 (224)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=2e-87 Score=717.76 Aligned_cols=384 Identities=47% Similarity=0.744 Sum_probs=375.3
Q ss_pred HhhcchhhhccH--HHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHH
Q 014061 46 VRAGPKKILFGK--ESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQE 122 (431)
Q Consensus 46 ~~~~~k~~~~g~--~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e 122 (431)
.+.|+|++.||. +||+.+++||+.|+++|++||||+||||||++ +|+|+|||||+||+|+|+++||+||+||+|+++
T Consensus 52 ~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~ 131 (600)
T PLN03167 52 KVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQ 131 (600)
T ss_pred hhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHH
Confidence 446789999999 79999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHhhcccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChH
Q 014061 123 VASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDE 202 (431)
Q Consensus 123 ~a~~~~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~ 202 (431)
+|++||+++||||||++|||++||+++.+++++|+||..|++||++|.+.+++.|++++.|+++ ++|.++|++|+++++
T Consensus 132 ~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~ 210 (600)
T PLN03167 132 AAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNY 210 (600)
T ss_pred HHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999975 679999999999999
Q ss_pred HHHHHHHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHH
Q 014061 203 FIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPL 282 (431)
Q Consensus 203 ~l~~li~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~ 282 (431)
.|++|++||+.+++++|.|.+++|++++|++++++|++|++||.||||++++++|+++++||+||++|++|+++++++++
T Consensus 211 ~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~ 290 (600)
T PLN03167 211 EVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGI 290 (600)
T ss_pred HHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCC
Q 014061 283 LEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQ 362 (431)
Q Consensus 283 le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~ 362 (431)
++.+.+.|+|+||++++|++++|++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++
T Consensus 291 le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~ 370 (600)
T PLN03167 291 LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEV 370 (600)
T ss_pred HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred CCCceEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 363 LGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 363 LG~a~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
||+|++|++++++|+++++.++++.+++|+.+|+.+++.++++|++++|++||++|+|++++|+|||+
T Consensus 371 LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~ 438 (600)
T PLN03167 371 LGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQ 438 (600)
T ss_pred CceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 2
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.8e-85 Score=696.54 Aligned_cols=383 Identities=47% Similarity=0.751 Sum_probs=373.1
Q ss_pred hcchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhh
Q 014061 48 AGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASK 126 (431)
Q Consensus 48 ~~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~ 126 (431)
+|+|++.||.++|..|++|+.+|+++|+|||||+||||||++ .|+++|||||+||||+|+++||++|+||+|++++|++
T Consensus 1 ~~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~ 80 (545)
T PRK12852 1 MAAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASK 80 (545)
T ss_pred CCcchhhccHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhh
Confidence 367999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHH
Q 014061 127 MNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGN 206 (431)
Q Consensus 127 ~~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~ 206 (431)
||+++||||||++|||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.+++.++|++|+++++.+++
T Consensus 81 q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~ 160 (545)
T PRK12852 81 TNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGK 160 (545)
T ss_pred cCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999998999999
Q ss_pred HHHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHH
Q 014061 207 LIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKT 286 (431)
Q Consensus 207 li~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i 286 (431)
++++|+.+++++|.|.++.|++..+.+++++|+.|++||.+|||++++++|+.+++||+||++|++|+++++++++++.+
T Consensus 161 li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i 240 (545)
T PRK12852 161 MIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAV 240 (545)
T ss_pred HHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCCHHHHHHHHHHH
Confidence 99999999999999999999987555599999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCc
Q 014061 287 TQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIA 366 (431)
Q Consensus 287 ~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a 366 (431)
.+.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++|+++|+|||++|||++++++.|++++++++++||+|
T Consensus 241 ~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~ 320 (545)
T PRK12852 241 VQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRA 320 (545)
T ss_pred HHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred eEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 367 RKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 367 ~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
+.|++++++|++++++++++.+++|+++|+.++++++++|++++|+||||||+|++|+|.|||+
T Consensus 321 ~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~R~~~l~~~~~tI~irG~ 384 (545)
T PRK12852 321 KKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGA 384 (545)
T ss_pred cEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 3
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.6e-85 Score=693.65 Aligned_cols=382 Identities=51% Similarity=0.791 Sum_probs=373.9
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhc
Q 014061 49 GPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127 (431)
Q Consensus 49 ~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~ 127 (431)
|+|.+.||.+++..|++|+.+++++|+|||||+||+|||++ .|+++|||||+||+|+|+++||.||+||+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~q 80 (542)
T PRK12849 1 MAKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKT 80 (542)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHH
Q 014061 128 NDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNL 207 (431)
Q Consensus 128 ~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 207 (431)
|+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.++|.++|+||++++++++++
T Consensus 81 d~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l 160 (542)
T PRK12849 81 NDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGEL 160 (542)
T ss_pred CCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHH
Q 014061 208 IADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTT 287 (431)
Q Consensus 208 i~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~ 287 (431)
+++|+..++++|.|.++.|++++|++++++|++|+++|.+|||+++.++|+++++||+||++|++|++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~ 240 (542)
T PRK12849 161 IAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVA 240 (542)
T ss_pred HHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHH
Confidence 99999999988989999999999867999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCce
Q 014061 288 QLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIAR 367 (431)
Q Consensus 288 ~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~ 367 (431)
+.|+||||++++|+++|+++|..|+++|.++|+|||+|+|+++|+++|+|||.+|||++++++.+.+++++++++||+|+
T Consensus 241 ~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~ 320 (542)
T PRK12849 241 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAK 320 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceee
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 368 KVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 368 ~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
.|++++++|++++++++++.++.|+++|+.++++++++|++++|+|||+||+|++++|.+||+
T Consensus 321 ~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~ 383 (542)
T PRK12849 321 RVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAA 383 (542)
T ss_pred EEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 4
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=6.4e-85 Score=693.19 Aligned_cols=382 Identities=52% Similarity=0.793 Sum_probs=370.1
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhc
Q 014061 49 GPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127 (431)
Q Consensus 49 ~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~ 127 (431)
|+|++.||.+++..|++|+.+++++|+|||||+||+|||++ .|+++|||||+||||+|+++||+||+||+|++++|++|
T Consensus 1 ~~~~~~~~~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~q 80 (542)
T PRK00013 1 MAKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKT 80 (542)
T ss_pred CCchhhchHHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHH
Q 014061 128 NDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNL 207 (431)
Q Consensus 128 ~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 207 (431)
|+++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.++|+||+++++.++++
T Consensus 81 d~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~l 160 (542)
T PRK00013 81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKL 160 (542)
T ss_pred CcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHH
Q 014061 208 IADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTT 287 (431)
Q Consensus 208 i~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~ 287 (431)
+++|+..++++|.|.++.+.+..+.+++++|++|++||.+|||.+++++|+++++||+||++|++|++++++.++++++.
T Consensus 161 v~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~ 240 (542)
T PRK00013 161 IAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVA 240 (542)
T ss_pred HHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCCHHHHHHHHHHHH
Confidence 99999999988888887655444445999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCce
Q 014061 288 QLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIAR 367 (431)
Q Consensus 288 ~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~ 367 (431)
+.|+||||++++|+++|+++|+.|+++|+++|+|||+|+||+.|+++|+|||++|||++++++.|++++++++++||+|+
T Consensus 241 ~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 320 (542)
T PRK00013 241 QSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDATLEDLGQAK 320 (542)
T ss_pred HhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEecccccCCcccCCHHHCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999899899999999999999
Q ss_pred EEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 368 KVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 368 ~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
.|+++++++++++++++++.+..|+++|+.++++++++|+||+|+|||+||+|++++|.|||+
T Consensus 321 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~g~~~tI~irG~ 383 (542)
T PRK00013 321 KVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAA 383 (542)
T ss_pred EEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 5
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=7.6e-85 Score=695.20 Aligned_cols=384 Identities=50% Similarity=0.763 Sum_probs=375.5
Q ss_pred hhcchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHh
Q 014061 47 RAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVAS 125 (431)
Q Consensus 47 ~~~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~ 125 (431)
++|+++..+|.+++..|++||..|+++|+|||||+||||||++ +|+|+|||||+||+|+|+++||+||+||+|++++|+
T Consensus 11 ~~~~~~~~~~~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~ 90 (555)
T PTZ00114 11 RFKGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVAS 90 (555)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hcccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHH
Q 014061 126 KMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIG 205 (431)
Q Consensus 126 ~~~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~ 205 (431)
+||+++||||||+||||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.++|.++|+||++++++++
T Consensus 91 ~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~ 170 (555)
T PTZ00114 91 KTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIG 170 (555)
T ss_pred hhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHH
Q 014061 206 NLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEK 285 (431)
Q Consensus 206 ~li~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~ 285 (431)
+++++|+..++++|.|.++.|++++|++++++|++|+++|.+|||++++++|+.+++||+||++|++|++++++++++++
T Consensus 171 ~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~~~~i~~~le~ 250 (555)
T PTZ00114 171 SLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEH 250 (555)
T ss_pred HHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecC-CCccccCCCCCCCC
Q 014061 286 TTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGE-LGLTLAGATSDQLG 364 (431)
Q Consensus 286 i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~-~~~~l~~~~~~~LG 364 (431)
+.+.|+||||++++|+++|+++|..|+++|.++|+|||+|++|++++++|+|||++|||+++++. .+..++++++++||
T Consensus 251 i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG 330 (555)
T PTZ00114 251 AVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLG 330 (555)
T ss_pred HHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEEecccccccCcccCCHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999987 77788999999999
Q ss_pred CceEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 365 IARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 365 ~a~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
+|++|+++++++++++++++++.|+.|+++|+.+++.++++|+|++|+|||+||+|++++|.|||+
T Consensus 331 ~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~i~G~ 396 (555)
T PTZ00114 331 SAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERLAKLSGGVAVIKVGGA 396 (555)
T ss_pred CCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999996
No 6
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=9.7e-85 Score=690.49 Aligned_cols=380 Identities=55% Similarity=0.824 Sum_probs=371.4
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 51 k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
|++.||.+++..|++|+.+++++|+|||||+||||||++ .|+++|||||+||+|+|+++||+||+||+|++++|++||+
T Consensus 2 ~~~~~~~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~ 81 (524)
T TIGR02348 2 KQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTND 81 (524)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCc
Confidence 678899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHHHH
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIA 209 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~ 209 (431)
++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.+++.++|++|++++++++++++
T Consensus 82 e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~ 161 (524)
T TIGR02348 82 VAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIA 161 (524)
T ss_pred eeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHHhC
Q 014061 210 DAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289 (431)
Q Consensus 210 ~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~~~ 289 (431)
+|+..++++|.|.++.|++.+|.+++++|++|+++|.+|||.+++++|+++++||+||++|++|++++++.++++++.+.
T Consensus 162 ~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~ 241 (524)
T TIGR02348 162 EAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQS 241 (524)
T ss_pred HHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCCHHHHHHHHHHHHHh
Confidence 99999999898999889888776699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEE
Q 014061 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKV 369 (431)
Q Consensus 290 g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V 369 (431)
|+||||++++|+++|+++|..|+++|+++|+|||+|+||+.|+++|+|||++|||++++++.|++++++++++||+|+.|
T Consensus 242 g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v 321 (524)
T TIGR02348 242 GKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKV 321 (524)
T ss_pred CcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 370 TVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 370 ~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
++++++|++++++++++.+..|+++|+.++++++++|+||+|+|||+||+|++++|.+||+
T Consensus 322 ~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~ 382 (524)
T TIGR02348 322 TVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAA 382 (524)
T ss_pred EEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 7
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.2e-84 Score=691.60 Aligned_cols=381 Identities=48% Similarity=0.751 Sum_probs=371.6
Q ss_pred chhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcc
Q 014061 50 PKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128 (431)
Q Consensus 50 ~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~ 128 (431)
+|++.||.+++..|++|+.+++++|++||||+||||||++ .|+|+|||||+||+|+|++++|+||+||+|++++|++||
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd 82 (546)
T PRK14104 3 AKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSA 82 (546)
T ss_pred cceecchHHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHHH
Q 014061 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLI 208 (431)
Q Consensus 129 ~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li 208 (431)
+++||||||+||||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.+++.++|++|+++++.+++++
T Consensus 83 ~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv 162 (546)
T PRK14104 83 DAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFL 162 (546)
T ss_pred ccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877889999999999999999999
Q ss_pred HHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHHh
Q 014061 209 ADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQ 288 (431)
Q Consensus 209 ~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~~ 288 (431)
++|+.+++++|.|.++.+++.++++++++|++|++||.||||+++++.++.++++|+||++|.+++++++++|+++.+.+
T Consensus 163 ~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~ 242 (546)
T PRK14104 163 ADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQ 242 (546)
T ss_pred HHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHH
Confidence 99999999999999998888866669999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceE
Q 014061 289 LSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARK 368 (431)
Q Consensus 289 ~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~ 368 (431)
.|+||||++++|+++|+++|..|+++|.++|+|||+|+||+.|+++|+|||++|||++++++.|++++++++++||+|++
T Consensus 243 ~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~ 322 (546)
T PRK14104 243 TGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKK 322 (546)
T ss_pred hCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred EEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 369 VTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 369 V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
|++++++|++++|+++++.+..|+++|+.++++++++|++++|+||||||+|++|+|.|||+
T Consensus 323 v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~~l~~~~atI~irG~ 384 (546)
T PRK14104 323 VMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGA 384 (546)
T ss_pred EEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 8
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-84 Score=690.24 Aligned_cols=382 Identities=46% Similarity=0.733 Sum_probs=371.8
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhc
Q 014061 49 GPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127 (431)
Q Consensus 49 ~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~ 127 (431)
|+|++.||.+++..|++||.+|+++|+|||||+||+|||++ .|+++|||||+||+++|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~q 81 (544)
T PRK12850 2 AAKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKT 81 (544)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhh
Confidence 67999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHH
Q 014061 128 NDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNL 207 (431)
Q Consensus 128 ~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 207 (431)
|+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++++++.++|.++|++|+++++.++++
T Consensus 82 d~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~l 161 (544)
T PRK12850 82 NDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEM 161 (544)
T ss_pred cchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHH
Q 014061 208 IADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTT 287 (431)
Q Consensus 208 i~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~ 287 (431)
++||+..++++|.|.++.+....+++++++|++|+++|.+|||+++.++|+.+++||+||++|++|++.++++++++++.
T Consensus 162 v~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~ 241 (544)
T PRK12850 162 IAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAVV 241 (544)
T ss_pred HHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCCHHHHHHHHHHHH
Confidence 99999999988888887766666667999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCce
Q 014061 288 QLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIAR 367 (431)
Q Consensus 288 ~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~ 367 (431)
+.|+||||++++|+++|+++|+.|+++|.++++|||+|+||++++++|+|||++|||++++++.|++++++++++||+|+
T Consensus 242 ~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~ 321 (544)
T PRK12850 242 QSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAK 321 (544)
T ss_pred HhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred EEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 368 KVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 368 ~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
+|++++++|+++++++++..+..|+++|+.+++++.++|+|++|+|||+||+|++++|.|||+
T Consensus 322 ~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~tI~irG~ 384 (544)
T PRK12850 322 RVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGA 384 (544)
T ss_pred EEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 9
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.4e-84 Score=685.35 Aligned_cols=382 Identities=48% Similarity=0.759 Sum_probs=369.6
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhc
Q 014061 49 GPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127 (431)
Q Consensus 49 ~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~ 127 (431)
|++.+.||.+++..|++|+++++++|+|||||+||+|||++ .|+++|||||+||+|+|+++||++|+||+|++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~q 81 (541)
T PRK12851 2 AAKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKT 81 (541)
T ss_pred CcceecccHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhh
Confidence 67899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHH
Q 014061 128 NDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNL 207 (431)
Q Consensus 128 ~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 207 (431)
|+++||||||+++||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++.+++.++|++|+++++.++++
T Consensus 82 d~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~l 161 (541)
T PRK12851 82 NDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRL 161 (541)
T ss_pred hHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHH
Q 014061 208 IADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTT 287 (431)
Q Consensus 208 i~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~ 287 (431)
+++|+..++++|.|.++.+....+++++++|++|++||.+|||++++++|+++++||+||++|+++++.+++.++++++.
T Consensus 162 v~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~ 241 (541)
T PRK12851 162 VAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAVV 241 (541)
T ss_pred HHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCcHHHHHHHHHHHH
Confidence 99999999988888886654444455999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCce
Q 014061 288 QLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIAR 367 (431)
Q Consensus 288 ~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~ 367 (431)
+.|+||||++++|+++|+++|..|+++|.++|+|||+|+||++++++|+|||++|||++++++.+++++++++++||+|+
T Consensus 242 ~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~ 321 (541)
T PRK12851 242 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAK 321 (541)
T ss_pred HhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred EEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 368 KVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 368 ~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
.|++++++|+++++++++++++.|+++|++++++++++|+|++|+|||+||+|++++|.|||+
T Consensus 322 ~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~~l~g~~~tI~irG~ 384 (541)
T PRK12851 322 KVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGAS 384 (541)
T ss_pred EEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 10
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.4e-83 Score=682.34 Aligned_cols=381 Identities=49% Similarity=0.773 Sum_probs=369.1
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhc
Q 014061 49 GPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127 (431)
Q Consensus 49 ~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~ 127 (431)
|+|++.||.++|+.+++||..++++|+|||||+||||||++ .|+++|||||+||||+|+++||++++|++|++++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~ 80 (529)
T CHL00093 1 MSKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKT 80 (529)
T ss_pred CCceeecCHHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred ccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHH
Q 014061 128 NDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNL 207 (431)
Q Consensus 128 ~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l 207 (431)
++++||||||++|||++||+++.+++++|+||..|++||++|.+.+++.|+++++|+++.++|.+||++|+++++.++++
T Consensus 81 ~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~l 160 (529)
T CHL00093 81 NDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSM 160 (529)
T ss_pred CceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCH-HhHHHHHHHH
Q 014061 208 IADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTV-KEIVPLLEKT 286 (431)
Q Consensus 208 i~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~-~~l~~~le~i 286 (431)
+++|+.+++++|.|.++.|+..++.+++++|++|+++|.||||++++++|+.+++||+||++|++|+.. .+++++++.+
T Consensus 161 v~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i 240 (529)
T CHL00093 161 IADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQV 240 (529)
T ss_pred HHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchHHHHHHHHHHH
Confidence 999999999989999988876666679999999999999999999999999999999999999999987 7899999999
Q ss_pred HhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCc
Q 014061 287 TQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIA 366 (431)
Q Consensus 287 ~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a 366 (431)
.+.|+|+||++++|+++++++|+.|+++|+++|+|||+|++|++++++|+|||++|||++++++.|.+++++++++||+|
T Consensus 241 ~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~ 320 (529)
T CHL00093 241 TKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVITEDAGLSLETIQLDLLGQA 320 (529)
T ss_pred HhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEecccccCCcCCCCHHHCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred eEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 367 RKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 367 ~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
++|+++++++++++ .++++.+..|+.+++.+++.++++|+|++|+|||+||+|++++|.+||+
T Consensus 321 ~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~~~l~g~~~~I~irg~ 383 (529)
T CHL00093 321 RRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERLAKLSGGVAVIKVGAA 383 (529)
T ss_pred eEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 99999999999998 6789999999999999999999999999999999999999999999996
No 11
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.2e-83 Score=677.08 Aligned_cols=380 Identities=53% Similarity=0.811 Sum_probs=371.4
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 51 k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
|++.||.+++..|++||..++++|+|||||+||+|||++ +|+++|||||+||+|+|+++||++|+||+|++++|++||+
T Consensus 1 ~~~~~g~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~ 80 (520)
T cd03344 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTND 80 (520)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhcc
Confidence 467899999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHHHH
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIA 209 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~ 209 (431)
++||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++++|+++.++|.++|+||++++++++++++
T Consensus 81 e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~ 160 (520)
T cd03344 81 VAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIA 160 (520)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred HHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHHhC
Q 014061 210 DAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289 (431)
Q Consensus 210 ~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~~~ 289 (431)
+|+..++++|.|.++.|++++|++++++|++|++||.+|||.+++++|+.+++||+|+++|++|+++++++++++++.+.
T Consensus 161 ~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~ 240 (520)
T cd03344 161 EAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240 (520)
T ss_pred HHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 99999998898999999999996799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEE
Q 014061 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKV 369 (431)
Q Consensus 290 g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V 369 (431)
|+||||++++|+++|+++|..|+++|.++|+|||+|++|++++++|+|||.+|||++++++.|++++++++++||+|++|
T Consensus 241 ~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v 320 (520)
T cd03344 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKV 320 (520)
T ss_pred CCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred EEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 370 TVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 370 ~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
++++++++++.++++++.++.|+++|+.+++++.++|++++|+||++||+|++++|.|||+
T Consensus 321 ~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~ 381 (520)
T cd03344 321 VVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKVGGA 381 (520)
T ss_pred EEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-84 Score=655.36 Aligned_cols=385 Identities=50% Similarity=0.738 Sum_probs=379.5
Q ss_pred HHhhcchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHH
Q 014061 45 VVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEV 123 (431)
Q Consensus 45 ~~~~~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~ 123 (431)
.+| ++|++.||.++|..+++|++.||++|.+|+||+|||++|.+ +|.|.|||||+|+++++++.|+++|+||++++++
T Consensus 12 ~~r-~ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~v 90 (550)
T KOG0356|consen 12 CVR-YAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDV 90 (550)
T ss_pred ccc-cccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHH
Confidence 345 78999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HhhcccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHH
Q 014061 124 ASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEF 203 (431)
Q Consensus 124 a~~~~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~ 203 (431)
+.++++.+||||||+++|++++.+++.+-+.+|.+|.++++|+.+|.+.+++.|+++++|+++++++.+||++|+|+|.+
T Consensus 91 a~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ 170 (550)
T KOG0356|consen 91 ANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKE 170 (550)
T ss_pred HhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHH
Q 014061 204 IGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLL 283 (431)
Q Consensus 204 l~~li~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~l 283 (431)
+++++.+|++++|++|+|++++|.+++|++++++||.||+||+||||+++++.+.++|++|++|+++.+|+++++|.|.+
T Consensus 171 ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~L 250 (550)
T KOG0356|consen 171 IGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPAL 250 (550)
T ss_pred HHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCC-ccccCCCCCC
Q 014061 284 EKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELG-LTLAGATSDQ 362 (431)
Q Consensus 284 e~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~-~~l~~~~~~~ 362 (431)
|...+..+||||++++|+.+||++|+.|++++.++|+|||+|+||+.|+..|.|||.+|||+++.++.+ +++++.++++
T Consensus 251 E~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~d 330 (550)
T KOG0356|consen 251 ELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLED 330 (550)
T ss_pred HHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 8999999999
Q ss_pred CCCceEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 363 LGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 363 LG~a~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
||.|.+|.++++.++++.+.++++.++.||+|++.+++.++++|++++|+||+++|+||+|+|+|||.
T Consensus 331 LG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvavi~vGg~ 398 (550)
T KOG0356|consen 331 LGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAVIKVGGH 398 (550)
T ss_pred cCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999995
No 13
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-65 Score=536.35 Aligned_cols=353 Identities=43% Similarity=0.582 Sum_probs=324.8
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhc
Q 014061 49 GPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM 127 (431)
Q Consensus 49 ~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~ 127 (431)
|.+++.+|.++|..|+.|++.++++||+||||+||||||++ .|+|+|||||+||||+|+++||. |||++++|++|
T Consensus 2 ~~~~~~~~~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~----akll~eva~~q 77 (524)
T COG0459 2 MGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPG----AKLLVEVAKKQ 77 (524)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCch----hHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999 88999999999999999999996 99999999999
Q ss_pred ccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChH-----HHHHHHhhcCCChH
Q 014061 128 NDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRD-----DIKAVASISAGNDE 202 (431)
Q Consensus 128 ~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~-----~l~~va~ts~~~~~ 202 (431)
|+++||||||+||||++||+++.+++++|+||+.|++||++|.+.++++|+++++++++.+ ...++++.++++++
T Consensus 78 d~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~ 157 (524)
T COG0459 78 DDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDE 157 (524)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChH
Confidence 9999999999999999999999999999999999999999999999999999999998655 44555555666679
Q ss_pred HHHHHHHHHHHhhhc-----CCceEEe-cCCCceeeeEeeeceEEeccCCCCccccccccCe-eEeeCceeEeeccccCC
Q 014061 203 FIGNLIADAIIKIGA-----DGVILIE-SSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSL-VEFDNAKVLITDQKIST 275 (431)
Q Consensus 203 ~l~~li~~Av~~vg~-----~g~I~i~-~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~-~~l~npkIll~d~~I~~ 275 (431)
++++++++|+.+++. |+++.++ .|++..|+ ++++||+||+||.+||| || ++++||+||++|++|+.
T Consensus 158 ~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~-~vveG~~~dkg~~s~~~------~~~~~~e~~~Ili~d~~l~~ 230 (524)
T COG0459 158 EIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETEL-EVVEGMVFDKGYLSPYF------MPDKRLENPKILLLDKKLEI 230 (524)
T ss_pred HHHHHHHHHHHHhcccccccCCeEEEEecCCCccce-EEEeeEEecCCccCCCC------CCccccccceEEEEcccccc
Confidence 999999999999998 7777665 55555555 99999999999999998 55 78999999999999999
Q ss_pred HHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccc
Q 014061 276 VKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTL 355 (431)
Q Consensus 276 ~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l 355 (431)
.++.+| ++...+.+.|+++++++++++++..++.|.+++.+++++|+.|||++.++..|+|++++||+++.+++.+
T Consensus 231 ~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~--- 306 (524)
T COG0459 231 KKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLG--- 306 (524)
T ss_pred ccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhH---
Confidence 999999 8888888899999999999999999999999999999999999999999999999999999999998654
Q ss_pred cCCCCCCCCCceEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061 356 AGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAAT-DNAYLSRKLSERIAKLSGGVAVIKVCYM 430 (431)
Q Consensus 356 ~~~~~~~LG~a~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~-~~~~~~~~l~eRla~l~g~~a~i~vGg~ 430 (431)
+ ....+|.|..|.+.+|.++...|.+ . ..++++. .++|+++++++|.++ +||+++|.+||+
T Consensus 307 ~--~l~~~~ga~~v~~~~d~t~~~~G~~----------~-~~~ve~~~~~~~~~~~~~~~~~~-~~~~~tI~vrga 368 (524)
T COG0459 307 E--RLAKLGGAKIVSVLKDLTTIVLGEG----------A-AGLVEETKTGDYDMEKLQERKAK-AGGVATILVRGA 368 (524)
T ss_pred H--HHHHccCceEEeecccCceeecCcc----------c-cceEEEeeccchhhhhhhhhhhc-CCCeEEEEECCc
Confidence 2 5578999999999999999999876 1 6777776 889999999999999 999999999997
No 14
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.3e-60 Score=506.69 Aligned_cols=325 Identities=25% Similarity=0.389 Sum_probs=292.3
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 51 k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
.+..+|.+++..|++||.+++++++|||||+||||||++ .|+++|||||+||+|+|+++||. |+|++++|++||+
T Consensus 9 ~~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~qd~ 84 (519)
T TIGR02339 9 TQRTKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDA 84 (519)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHHHHH
Confidence 346678999999999999999999999999999999999 99999999999999999999997 9999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCCCh------
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAGND------ 201 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~~~------ 201 (431)
++||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.|.++|+||++++
T Consensus 85 ~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~ 164 (519)
T TIGR02339 85 EVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVT 164 (519)
T ss_pred HhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchh
Confidence 99999999999999999999999999999999999999999999999999999986 3678999999999764
Q ss_pred -HHHHHHHHHHHHhhhc---CCc-------eEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEe
Q 014061 202 -EFIGNLIADAIIKIGA---DGV-------ILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLI 268 (431)
Q Consensus 202 -~~l~~li~~Av~~vg~---~g~-------I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll 268 (431)
+.|++++++|+.++++ +|. |++ ..|++++|+ ++++|++|+++|.+|. |+.+++||+|++
T Consensus 165 ~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~vi~~~~~~~~-------m~~~i~n~kIll 236 (519)
T TIGR02339 165 KDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDT-ELVEGIVVDKEPVHPG-------MPKRVKNAKIAL 236 (519)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcc-eeEeeEEEecCCCCCC-------CccccCCCcEEE
Confidence 8899999999999985 564 334 689999998 9999999999999984 888999999999
Q ss_pred eccc-------------cCCHHhHHHHHH-----------HHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecC
Q 014061 269 TDQK-------------ISTVKEIVPLLE-----------KTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKC 324 (431)
Q Consensus 269 ~d~~-------------I~~~~~l~~~le-----------~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~ 324 (431)
++++ |++++++.++++ ++++.|+||||++++|++.|+++|..++ +++|+
T Consensus 237 l~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~g------I~~v~- 309 (519)
T TIGR02339 237 LDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAG------ILAVR- 309 (519)
T ss_pred EeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCC------CEEEe-
Confidence 9998 678888777665 8999999999999999999999998664 45555
Q ss_pred CCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEeC---CeEEEEeCCC------------CHHHHH
Q 014061 325 PGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKS---NSTTIVADPY------------TKAEIQ 389 (431)
Q Consensus 325 ~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~~---~~~~ii~g~~------------~~~~i~ 389 (431)
++++++|+|||++|||++++ +++++++++||+|++|++.+ ++++++++++ ++..++
T Consensus 310 ----~v~~~~L~rIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~ 380 (519)
T TIGR02339 310 ----RVKKSDIEKLARATGAKIVS-----SIKEITESDLGYAGLVEERKVGDDKMTFVEGCKNPKAVTILLRGGTEHVVD 380 (519)
T ss_pred ----cCCHHHHHHHHHHhCCEEeC-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHHHHH
Confidence 66799999999999999999 68889999999999998764 6667766654 567888
Q ss_pred HHHHHHHHHHhhcC
Q 014061 390 ARIMQIKKDLAATD 403 (431)
Q Consensus 390 ~ri~~l~~~i~~~~ 403 (431)
+..+.+++.+....
T Consensus 381 E~~r~i~DAl~~~~ 394 (519)
T TIGR02339 381 ELERSIQDALHVVA 394 (519)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 15
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2e-60 Score=505.07 Aligned_cols=324 Identities=23% Similarity=0.374 Sum_probs=292.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+..+|.+++..|++||.+++++|++||||+||+|||++ .|+++|||||+||+|+|+++||. |+|++++|++||++
T Consensus 9 ~~~~~~~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~ 84 (517)
T cd03343 9 QRTSGRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPA----AKMLVEVAKTQDEE 84 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHH----HHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999 99999999999999999999997 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCCCh------H
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAGND------E 202 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~~~------~ 202 (431)
+||||||+++|+++|++++.+++++|+||..|++||++|.+.++++|++++.+++ +.+.|.+||++|++++ +
T Consensus 85 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~ 164 (517)
T cd03343 85 VGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKD 164 (517)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHH
Confidence 9999999999999999999999999999999999999999999999999999986 7789999999999865 8
Q ss_pred HHHHHHHHHHHhhhcCCc---------eEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecc
Q 014061 203 FIGNLIADAIIKIGADGV---------ILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQ 271 (431)
Q Consensus 203 ~l~~li~~Av~~vg~~g~---------I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~ 271 (431)
.|++++++|+.++++++. |++ ..|++++|| ++++|++|+++|.||+ |+..++||+|+++++
T Consensus 165 ~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds-~lv~G~v~~~~~~~~~-------m~~~~~n~~Illl~~ 236 (517)
T cd03343 165 KLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDT-ELIRGIVIDKEVVHPG-------MPKRVENAKIALLDA 236 (517)
T ss_pred HHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHc-ceeeeEEEeccCCCCC-------CccccCCCcEEEEec
Confidence 999999999999987642 666 789999998 9999999999999997 577889999999999
Q ss_pred c-------------cCCHHhHHHH-----------HHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 272 K-------------ISTVKEIVPL-----------LEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 272 ~-------------I~~~~~l~~~-----------le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
+ +++++++.++ ++++++.|+||||++++|++.|+++|.+++ ++||+
T Consensus 237 ~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~g------I~~v~---- 306 (517)
T cd03343 237 PLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAG------ILAVR---- 306 (517)
T ss_pred cccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------cEEEE----
Confidence 8 4777777654 458999999999999999999999998654 45666
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEe---CCeEEEEeCCC------------CHHHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVK---SNSTTIVADPY------------TKAEIQARI 392 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~---~~~~~ii~g~~------------~~~~i~~ri 392 (431)
++++++|+|||++|||++++ +++++++++||+|++|++. +++++++++|+ ++..++++.
T Consensus 307 -~v~~~~l~~Ia~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~ 380 (517)
T cd03343 307 -RVKKSDMEKLARATGAKIVT-----NIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKNPKAVTILLRGGTEHVVDELE 380 (517)
T ss_pred -eCCHHHHHHHHHHhCCEEec-----chhhCChhhCCccceEEEEEECCeEEEEEEcCCCCceEEEEEECCcHHHHHHHH
Confidence 66799999999999999999 6889999999999999865 66666666554 566888999
Q ss_pred HHHHHHHhhcC
Q 014061 393 MQIKKDLAATD 403 (431)
Q Consensus 393 ~~l~~~i~~~~ 403 (431)
+.+++.+....
T Consensus 381 ~~l~Dal~~~~ 391 (517)
T cd03343 381 RALEDALRVVA 391 (517)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 16
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-60 Score=502.51 Aligned_cols=317 Identities=21% Similarity=0.320 Sum_probs=283.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+...|.+++..|+.+|..++++|+|||||+||+|||++ .|+++|||||+||+++|+++||+ ++|++++|++||++
T Consensus 6 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----a~l~~~~a~~qd~~ 81 (484)
T cd03342 6 EVLRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT----ASMIARAATAQDDI 81 (484)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHHHhhhH
Confidence 35568899999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC---ChHHHHHHHhhcCCCh------
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT---GRDDIKAVASISAGND------ 201 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~---~~~~l~~va~ts~~~~------ 201 (431)
+||||||++|||++||+++.+++++|+||..|++||++|.+.++++|++++.+++ +.+.+.+||++|++++
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~ 161 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLA 161 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHH
Confidence 9999999999999999999999999999999999999999999999999999987 7889999999999874
Q ss_pred HHHHHHHHHHHHhhhcCC-c-------eEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecccc
Q 014061 202 EFIGNLIADAIIKIGADG-V-------ILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKI 273 (431)
Q Consensus 202 ~~l~~li~~Av~~vg~~g-~-------I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I 273 (431)
+.|++++++|+..+++++ . |....|+++.|+ ++++|++|+++|.+|+ |+++++||+|+++|++|
T Consensus 162 ~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~~ds-~~i~G~~~~~~~~~~~-------m~~~~~n~~Ill~~~~l 233 (484)
T cd03342 162 DQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSDSDT-KLIRGLVLDHGARHPD-------MPKRVENAYILTCNVSL 233 (484)
T ss_pred HHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCChhhc-eEEeeEEEecCCCCCC-------CCccccCceEEEEeCCC
Confidence 899999999999998875 2 333578899998 9999999999999997 57889999999999999
Q ss_pred CCHHh-HHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCC
Q 014061 274 STVKE-IVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELG 352 (431)
Q Consensus 274 ~~~~~-l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~ 352 (431)
+..+. +...+ -.+|||++++|++.++++|.+|+ |+||| ++++++|+|||++|||++++
T Consensus 234 e~~~~~~~~~~------~~~lvi~~~~I~~~al~~l~~~~------I~av~-----~~~~~~l~~ia~~tGa~ii~---- 292 (484)
T cd03342 234 EYEKTEVNSGF------FYSVVINQKGIDPPSLDMLAKEG------ILALR-----RAKRRNMERLTLACGGVAMN---- 292 (484)
T ss_pred CCCccccCcEE------EEEEEEeCCCccHHHHHHHHHCC------CeEEE-----eCCHHHHHHHHHHhCCEEec----
Confidence 87654 22111 14699999999999999999984 68888 45689999999999999999
Q ss_pred ccccCCCCCCCCCceEE---EEeCCeEEEEeCCC------------CHHHHHHHHHHHHHHHhhc
Q 014061 353 LTLAGATSDQLGIARKV---TVKSNSTTIVADPY------------TKAEIQARIMQIKKDLAAT 402 (431)
Q Consensus 353 ~~l~~~~~~~LG~a~~V---~i~~~~~~ii~g~~------------~~~~i~~ri~~l~~~i~~~ 402 (431)
+++++++++||+|++| ++++++|+++++++ ++..+++..+.+.+.+...
T Consensus 293 -~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~v 356 (484)
T cd03342 293 -SVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAV 356 (484)
T ss_pred -ccccCChhhCcccceEEEEEECCeEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999 56667777766554 5678899999999988764
No 17
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.6e-60 Score=502.49 Aligned_cols=326 Identities=24% Similarity=0.326 Sum_probs=286.5
Q ss_pred hccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccccC
Q 014061 54 LFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAG 132 (431)
Q Consensus 54 ~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~vG 132 (431)
..|.+++..|++||.+++++|++||||+||+|||++ .|+++|||||+||+|+|+++||+ |+|++++|++||+++|
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~q~~~~G 79 (527)
T cd03335 4 TSGQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDKEVG 79 (527)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChH----HHHHHHHHHHHHHHhC
Confidence 457899999999999999999999999999999999 99999999999999999999999 9999999999999999
Q ss_pred CCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHc-cCcccC--ChHHHHHHHhhcCC------ChHH
Q 014061 133 DGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ-KSFPVT--GRDDIKAVASISAG------NDEF 203 (431)
Q Consensus 133 DGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~~~l~~va~ts~~------~~~~ 203 (431)
|||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++ +++|++ +.+.|.++|+||++ +.+.
T Consensus 80 DGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ 159 (527)
T cd03335 80 DGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDF 159 (527)
T ss_pred CCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHH
Confidence 99999999999999999999999999999999999999999999996 899987 78889999999987 2489
Q ss_pred HHHHHHHHHHhhhc---CCc-------e--EEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecc
Q 014061 204 IGNLIADAIIKIGA---DGV-------I--LIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQ 271 (431)
Q Consensus 204 l~~li~~Av~~vg~---~g~-------I--~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~ 271 (431)
|++++++|+..++. +|. | ....|++++|+ ++++|++|+++|.+| +|+.+++||+|+++++
T Consensus 160 ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s-~li~Givi~~~~~~~-------~m~~~i~n~kIlll~~ 231 (527)
T cd03335 160 FANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKES-YLVNGYALNCTRASQ-------GMPTRVKNAKIACLDF 231 (527)
T ss_pred HHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhc-ceeeeEEEecccCCC-------CCcccccCCcEEEEec
Confidence 99999999999952 242 2 24689999998 999999999999998 3888999999999999
Q ss_pred ccCC-------------HHh-----------HHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 272 KIST-------------VKE-----------IVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 272 ~I~~-------------~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
+|+. +++ +.++++++.+.|+||||++++|++.|+++|..++ |++++
T Consensus 232 ~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~------I~~v~---- 301 (527)
T cd03335 232 NLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAG------AMAVR---- 301 (527)
T ss_pred cCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE----
Confidence 8754 222 3367888999999999999999999999999874 56665
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCc-cccCCCCCCCCCceEEE---EeCCeEEEEeCC------------CCHHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGL-TLAGATSDQLGIARKVT---VKSNSTTIVADP------------YTKAEIQAR 391 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~-~l~~~~~~~LG~a~~V~---i~~~~~~ii~g~------------~~~~~i~~r 391 (431)
++++++|+|||++|||+++++..++ ..+++++++||+|+.|+ ++++++++++++ ++...++++
T Consensus 302 -~v~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~~~~~TIllrG~t~~~l~e~ 380 (527)
T cd03335 302 -RVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKKRSSASIILRGANDFMLDEM 380 (527)
T ss_pred -eCCHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHHHH
Confidence 6779999999999999999965444 22456677999999999 666666666654 456789999
Q ss_pred HHHHHHHHhhc
Q 014061 392 IMQIKKDLAAT 402 (431)
Q Consensus 392 i~~l~~~i~~~ 402 (431)
.+.+++.+...
T Consensus 381 er~i~Dal~~~ 391 (527)
T cd03335 381 ERSLHDALCVV 391 (527)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 18
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-59 Score=497.87 Aligned_cols=324 Identities=21% Similarity=0.331 Sum_probs=285.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+...|.+++..|+.+|.+++++|+|||||+||||||++ .|+++|||||+||+|+|+++||+ ++|++++|++||++
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~----a~ll~~~a~~qd~~ 85 (531)
T TIGR02347 10 ESLRRDAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPT----ASMIARAATAQDDI 85 (531)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHHhhhh
Confidence 45678999999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCccc---CChHHHHHHHhhcCCC------h
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPV---TGRDDIKAVASISAGN------D 201 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v---~~~~~l~~va~ts~~~------~ 201 (431)
+||||||++|||++||+++.+|+++|+||..|++||+.|.+.++++|+++++++ .+.+.|.++|+|++++ +
T Consensus 86 ~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~ 165 (531)
T TIGR02347 86 TGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLA 165 (531)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhH
Confidence 999999999999999999999999999999999999999999999999998664 5778899999999865 7
Q ss_pred HHHHHHHHHHHHhhhcCCc------eEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecccc
Q 014061 202 EFIGNLIADAIIKIGADGV------ILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKI 273 (431)
Q Consensus 202 ~~l~~li~~Av~~vg~~g~------I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I 273 (431)
++|++++++|+..++++|. |.+ ..|++..|+ ++++|++|+++|.+|+ |+.+++||+|+++|++|
T Consensus 166 ~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds-~~v~Giv~~~~~~~~~-------~~~~~~n~~Ill~~~~l 237 (531)
T TIGR02347 166 DQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDT-TLIRGLVLDHGARHPD-------MPRRVKNAYILTCNVSL 237 (531)
T ss_pred HHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCcccc-EEEeeEEEecCcCCCC-------CceeccCceEEEEeCCC
Confidence 8999999999999988753 333 578899998 9999999999999997 67889999999999987
Q ss_pred CCH-------------Hh-----------HHHHHHHHHhCCC-------C---EEEEecCCchHHHHHHHHcccccceee
Q 014061 274 STV-------------KE-----------IVPLLEKTTQLSV-------P---LLIIAEDISSQVLETLVMNKIRGLLNV 319 (431)
Q Consensus 274 ~~~-------------~~-----------l~~~le~i~~~g~-------~---lvIi~~~I~~~aL~~L~~n~l~G~~~v 319 (431)
+.. ++ +...++++.+.|. + ||+++++|++.++++|.+++ |
T Consensus 238 e~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~------I 311 (531)
T TIGR02347 238 EYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEG------I 311 (531)
T ss_pred CCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCC------c
Confidence 533 22 2345677777551 4 99999999999999999875 5
Q ss_pred eeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEE---EEeCCeEEEEeCCC------------C
Q 014061 320 AVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKV---TVKSNSTTIVADPY------------T 384 (431)
Q Consensus 320 ~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V---~i~~~~~~ii~g~~------------~ 384 (431)
+|++ ++++++|+|||++|||++++ +++++++++||+|++| .+++++|+++++++ +
T Consensus 312 ~~i~-----rv~~~~le~ia~~tGa~~i~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TI~lrG~t 381 (531)
T TIGR02347 312 MALR-----RAKRRNMERLTLACGGEALN-----SVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKNPKSCTILIKGPN 381 (531)
T ss_pred eEEc-----cCCHHHHHHHHHHhCCEEec-----ccccCCccccccceEEEEEEECCeEEEEEEcCCCCCeEEEEEeCCC
Confidence 7776 55689999999999999998 7899999999999999 56677777766654 5
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 014061 385 KAEIQARIMQIKKDLAATD 403 (431)
Q Consensus 385 ~~~i~~ri~~l~~~i~~~~ 403 (431)
...++++.+.+++.+....
T Consensus 382 ~~~l~E~er~l~DAl~v~~ 400 (531)
T TIGR02347 382 DHTIKQIKDAVRDGLRAVK 400 (531)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6788999999999887643
No 19
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-59 Score=498.09 Aligned_cols=329 Identities=22% Similarity=0.318 Sum_probs=290.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+...|.+++..|++||..|+++|+|||||+||||||++ +|+++|||||+||+|+|+++||+ |+|++++|++||++
T Consensus 6 ~~~~~~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~----akll~~~a~~qd~~ 81 (536)
T TIGR02340 6 ERTSGQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPA----AKILVELAQLQDRE 81 (536)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChH----HHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHcc-CcccC--ChHHHHHHHhhcCC------Ch
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQK-SFPVT--GRDDIKAVASISAG------ND 201 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~-s~~v~--~~~~l~~va~ts~~------~~ 201 (431)
+||||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|+++ ++|++ +.+++.++|+|+++ ++
T Consensus 82 ~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 82 VGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhH
Confidence 99999999999999999999999999999999999999999999999975 88887 78889999999987 57
Q ss_pred HHHHHHHHHHHHhhh---cCCc-------eE--EecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEee
Q 014061 202 EFIGNLIADAIIKIG---ADGV-------IL--IESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLIT 269 (431)
Q Consensus 202 ~~l~~li~~Av~~vg---~~g~-------I~--i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~ 269 (431)
+.|++++++|+..++ .+|. |. ...|++++|+ ++++|++|+++|.+| +|+.+++||+|+++
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s-~~i~Gi~i~~~~~~~-------~m~~~~~n~kIli~ 233 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARES-YLVKGYALNCTRASQ-------QMPKRIKKAKIACL 233 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCcccc-EEEEEEEEecccCCC-------CCcceecCCcEEEE
Confidence 899999999999996 3343 22 3689999887 999999999999987 48999999999999
Q ss_pred ccccCCHH------------------------hHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCC
Q 014061 270 DQKISTVK------------------------EIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCP 325 (431)
Q Consensus 270 d~~I~~~~------------------------~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~ 325 (431)
+++|+..+ .+.+.++.+++.|++||+++++|++.++++|.+++ +++++
T Consensus 234 ~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~------I~~i~-- 305 (536)
T TIGR02340 234 DFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAG------AMGVR-- 305 (536)
T ss_pred ecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCC------cEEEe--
Confidence 99974432 12366788889999999999999999999999885 46665
Q ss_pred CCCCCchhhHHHHHHHhCCeEeecCCCc-cccCCCCCCCCCceEEE---EeCCeEEEEeCCC------------CHHHHH
Q 014061 326 GFGDGKKALLQDIALMTGADFLSGELGL-TLAGATSDQLGIARKVT---VKSNSTTIVADPY------------TKAEIQ 389 (431)
Q Consensus 326 ~~g~~r~~~LedIa~~TGa~ii~~~~~~-~l~~~~~~~LG~a~~V~---i~~~~~~ii~g~~------------~~~~i~ 389 (431)
++++++|+|||++|||+++++..++ ..+++++++||+|+.|+ +++++|+++++++ +...++
T Consensus 306 ---rv~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~~~~TIlirG~t~~~l~ 382 (536)
T TIGR02340 306 ---RCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTKGRKSASIILRGANDFMLD 382 (536)
T ss_pred ---cCCHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCCCCCEEEEEEeCCcHHHHH
Confidence 6679999999999999999976555 33556778899999999 6777777776654 566899
Q ss_pred HHHHHHHHHHhhcC
Q 014061 390 ARIMQIKKDLAATD 403 (431)
Q Consensus 390 ~ri~~l~~~i~~~~ 403 (431)
++.+.+++.+....
T Consensus 383 E~~r~i~DAl~~~~ 396 (536)
T TIGR02340 383 EMERSLHDALCVVK 396 (536)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-59 Score=497.39 Aligned_cols=329 Identities=21% Similarity=0.308 Sum_probs=286.5
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccccc
Q 014061 53 ILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLA 131 (431)
Q Consensus 53 ~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~v 131 (431)
...+.+++..|+.+|..++++|+|||||+||||||++ +|+++|||||+||+|+|+++||+ |+|++++|++||+++
T Consensus 3 ~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~----a~ll~~~a~~q~~~~ 78 (515)
T cd03338 3 KEKPADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPA----AKMLVELSKAQDIEA 78 (515)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHH----HHHHHHHHHHHHhHh
Confidence 3456778999999999999999999999999999999 99999999999999999999999 999999999999999
Q ss_pred CCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCC------ChHH
Q 014061 132 GDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAG------NDEF 203 (431)
Q Consensus 132 GDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~------~~~~ 203 (431)
||||||+++||++|++++.+++++|+||..|++||++|.+.++++|++++.+++ +.+.|.++|+||++ +++.
T Consensus 79 GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ 158 (515)
T cd03338 79 GDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSL 158 (515)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHH
Confidence 999999999999999999999999999999999999999999999999999886 78899999999998 5689
Q ss_pred HHHHHHHHHHhhhcCCc----------eEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecccc
Q 014061 204 IGNLIADAIIKIGADGV----------ILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKI 273 (431)
Q Consensus 204 l~~li~~Av~~vg~~g~----------I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I 273 (431)
+++++++|+.++++++. |.++.|++++|+ ++++|++|+++|.+|++ ||..++||+|+++++++
T Consensus 159 ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds-~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~l 231 (515)
T cd03338 159 LAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDT-ELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCL 231 (515)
T ss_pred HHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChhhc-eeeeeEEEeccccCcCC------CCccccCCcEEEEeccc
Confidence 99999999999998763 566789999999 99999999999999862 36778899999988774
Q ss_pred C-------------CH-----------HhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCC
Q 014061 274 S-------------TV-----------KEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGD 329 (431)
Q Consensus 274 ~-------------~~-----------~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~ 329 (431)
+ ++ +++.++++++++.|+||||++++|++++++.++.|.+++ .+|+||+ +
T Consensus 232 e~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~-~~I~av~-----~ 305 (515)
T cd03338 232 SPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAK-LKIMVVK-----D 305 (515)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHH-CCceEEe-----c
Confidence 2 22 345678999999999999999998444444333333332 4678887 6
Q ss_pred CchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEeC----------------CeEEEEeCCCCHHHHHHHHH
Q 014061 330 GKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKS----------------NSTTIVADPYTKAEIQARIM 393 (431)
Q Consensus 330 ~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~~----------------~~~~ii~g~~~~~~i~~ri~ 393 (431)
+++++|+|||++|||++++ +++++++++||+|+.|++.+ ..+|++-++++...++++.+
T Consensus 306 ~~~~~LerIa~~tGa~ii~-----sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r 380 (515)
T cd03338 306 IEREEIEFICKTIGCKPVA-----SIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAER 380 (515)
T ss_pred CCHHHHHHHHHHHCCEEec-----ccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHH
Confidence 7799999999999999999 68899999999999998542 23455555567889999999
Q ss_pred HHHHHHhhcC
Q 014061 394 QIKKDLAATD 403 (431)
Q Consensus 394 ~l~~~i~~~~ 403 (431)
.+++.+....
T Consensus 381 ~i~Dal~~~~ 390 (515)
T cd03338 381 SLHDALCVIR 390 (515)
T ss_pred HHHHHHHHHH
Confidence 9999997653
No 21
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.5e-59 Score=495.64 Aligned_cols=324 Identities=24% Similarity=0.349 Sum_probs=285.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+...|.+++..|++||..++++++|||||+||||||++ .|+++|||||+||+|+|+++||+ |+|++++|++||++
T Consensus 21 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~----akll~~~a~~qd~~ 96 (532)
T TIGR02343 21 KRLKGLEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSKSQDDE 96 (532)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHH----HHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC----ChHHHHHHHhhcCCC------
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT----GRDDIKAVASISAGN------ 200 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~~~l~~va~ts~~~------ 200 (431)
+||||||+++||++||+++.+|+++|+||+.|++||+.|.+.++++|++++++++ +.+.|.++|+|++++
T Consensus 97 ~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~ 176 (532)
T TIGR02343 97 IGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKC 176 (532)
T ss_pred hcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHH
Confidence 9999999999999999999999999999999999999999999999999998874 367899999998864
Q ss_pred hHHHHHHHHHHHHhhhcC--C-----c--eEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecc
Q 014061 201 DEFIGNLIADAIIKIGAD--G-----V--ILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQ 271 (431)
Q Consensus 201 ~~~l~~li~~Av~~vg~~--g-----~--I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~ 271 (431)
.+.|++++++|+..+... + . |....|++++|+ ++++|++|+++|.+|+ |+..++||+|+++++
T Consensus 177 ~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds-~~v~Gi~i~~~~~~~~-------m~~~~~n~kI~l~~~ 248 (532)
T TIGR02343 177 HRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDT-KLIKGIIIDKDFSHPQ-------MPKEVKDAKIAILTC 248 (532)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccc-eeEeeEEEecCcCCCC-------CCeeecCCcEEEEEe
Confidence 468899999999988531 1 2 334689999999 9999999999999997 677788999999987
Q ss_pred c-------------cCCHHhH-----------HHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 272 K-------------ISTVKEI-----------VPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 272 ~-------------I~~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
+ +++++++ .++++++++.|+||||++++|++.++++|..|+ +++||.+
T Consensus 249 ~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~------i~~v~~~-- 320 (532)
T TIGR02343 249 PFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQND------LPAVRWV-- 320 (532)
T ss_pred eccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCC------cEEEEcC--
Confidence 5 4556655 678999999999999999999999999999986 4567744
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEe-----CCeEEEEeCC------------CCHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVK-----SNSTTIVADP------------YTKAEIQA 390 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~-----~~~~~ii~g~------------~~~~~i~~ 390 (431)
++++|+|||++|||++++ +++++++++||+|++|+.. .++++++++| +++..+++
T Consensus 321 ---~~~~l~~Ia~~tGa~~i~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~E 392 (532)
T TIGR02343 321 ---GGHELELIAIATGGRIVP-----RFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEE 392 (532)
T ss_pred ---CHHHHHHHHHHhCCEEec-----ccccCCHhHCcccceEEEEEecCCcceEEEEECCCCCCEEEEEEECCCHHHHHH
Confidence 488899999999999999 7899999999999998732 2355555554 45678999
Q ss_pred HHHHHHHHHhhcC
Q 014061 391 RIMQIKKDLAATD 403 (431)
Q Consensus 391 ri~~l~~~i~~~~ 403 (431)
..+.+++.+....
T Consensus 393 ~er~l~DAl~~v~ 405 (532)
T TIGR02343 393 AKRSIHDALCVVR 405 (532)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 22
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.6e-59 Score=495.39 Aligned_cols=324 Identities=22% Similarity=0.342 Sum_probs=287.1
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+..+|.+++..|++||.+++++++|||||+||||||++ .|+++|||||+||+|+|+++||+ |+|++++|++||++
T Consensus 17 ~~~~~~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~ 92 (526)
T cd03339 17 KRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQDDE 92 (526)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHH----HHHHHHHHHhhhhh
Confidence 57889999999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC----ChHHHHHHHhhcCCC------
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT----GRDDIKAVASISAGN------ 200 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~----~~~~l~~va~ts~~~------ 200 (431)
+||||||+++||++||+++.+++++|+||..|++||+.|.+.++++|+++++|++ +.+.|.++|+||+++
T Consensus 93 ~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~ 172 (526)
T cd03339 93 IGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRC 172 (526)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhH
Confidence 9999999999999999999999999999999999999999999999999999885 577899999999874
Q ss_pred hHHHHHHHHHHHHhhhcC-------Cce--EEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecc
Q 014061 201 DEFIGNLIADAIIKIGAD-------GVI--LIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQ 271 (431)
Q Consensus 201 ~~~l~~li~~Av~~vg~~-------g~I--~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~ 271 (431)
.+.|++++++|+..+... ..| ....|++++|| ++++|++|+++|.||+ |+..++||||+++++
T Consensus 173 ~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS-~~v~Givi~~~~~~~~-------m~~~~~n~kI~ll~~ 244 (526)
T cd03339 173 HRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDT-KLVKGIVIDKDFSHPQ-------MPKEVKDAKIAILTC 244 (526)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHc-ceeeeEEEecccCCCC-------CCceecCCCEEEEEe
Confidence 378999999999888531 123 34689999999 9999999999999997 566788999999987
Q ss_pred c-------------cCCHHh-----------HHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 272 K-------------ISTVKE-----------IVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 272 ~-------------I~~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
+ ++++++ +.++++++++.|+||||++++|++.|+++|.+|+ ++|||++
T Consensus 245 ~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~------I~av~~v-- 316 (526)
T cd03339 245 PFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNG------LPAVRWV-- 316 (526)
T ss_pred cccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCC------CEEEEeC--
Confidence 5 355555 6678999999999999999999999999999886 4678754
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEE-----eCCeEEEEeCCC------------CHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTV-----KSNSTTIVADPY------------TKAEIQA 390 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i-----~~~~~~ii~g~~------------~~~~i~~ 390 (431)
++++|+|||++|||++++ ++++++++.||+|+.|+. +++.++++++|+ +...+++
T Consensus 317 ---~~~~LerIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~~~~~~TIllrG~t~~~l~E 388 (526)
T cd03339 317 ---GGVEIELIAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCPNSKAVTIFIRGGNKMIIEE 388 (526)
T ss_pred ---CHHHHHHHHHHhCCEEec-----chhhCChhhcccCceEEEEEecCCCcEEEEEECCCCCCEEEEEEECCCHHHHHH
Confidence 478999999999999999 789999999999999973 235566665544 5678999
Q ss_pred HHHHHHHHHhhcC
Q 014061 391 RIMQIKKDLAATD 403 (431)
Q Consensus 391 ri~~l~~~i~~~~ 403 (431)
..+.+++.+....
T Consensus 389 ~er~l~DAl~~~~ 401 (526)
T cd03339 389 AKRSLHDALCVVR 401 (526)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 23
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-58 Score=492.39 Aligned_cols=326 Identities=22% Similarity=0.324 Sum_probs=287.7
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccccc
Q 014061 53 ILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLA 131 (431)
Q Consensus 53 ~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~v 131 (431)
...|.+++..|+.+|.+++++|+|||||+||+|||++ .|+++|||||+||+++|+++||+ |+|++++|++|++++
T Consensus 11 ~~~~~~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~q~~~~ 86 (522)
T cd03340 11 TSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPA----AKTLVDIAKSQDAEV 86 (522)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHH----HHHHHHHHHHhHhHh
Confidence 4567889999999999999999999999999999999 99999999999999999999999 999999999999999
Q ss_pred CCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCC------hHHHHHHHhhcCC------
Q 014061 132 GDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTG------RDDIKAVASISAG------ 199 (431)
Q Consensus 132 GDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~------~~~l~~va~ts~~------ 199 (431)
||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|+++++++++ .+.|.++|+++++
T Consensus 87 GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~ 166 (522)
T cd03340 87 GDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIAS 166 (522)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchh
Confidence 9999999999999999999999999999999999999999999999999998864 5679999999976
Q ss_pred ChHHHHHHHHHHHHhhhcCC---ceE--EecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecccc-
Q 014061 200 NDEFIGNLIADAIIKIGADG---VIL--IESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKI- 273 (431)
Q Consensus 200 ~~~~l~~li~~Av~~vg~~g---~I~--i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I- 273 (431)
++++|++++++|+..+++++ .|+ ...|++++|+ ++++|++|+++|.+|+|.+ |+..++||+|+++++++
T Consensus 167 ~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~ds-~lv~Giv~~k~~~~~~~~~----~~~~~~n~kIll~~~~Le 241 (522)
T cd03340 167 EKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLEDS-QLVNGVAFKKTFSYAGFEQ----QPKKFKNPKILLLNVELE 241 (522)
T ss_pred HHHHHHHHHHHHHHHhcccCChhHheEeeecCCChhhc-eeeeeEEEecccCcccccc----CCccccCCeEEEEeCCCC
Confidence 57999999999999998765 333 3589999998 9999999999999998744 56779999999999984
Q ss_pred ------------CCHHh-----------HHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCC
Q 014061 274 ------------STVKE-----------IVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDG 330 (431)
Q Consensus 274 ------------~~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~ 330 (431)
+++.+ +.+.++.+.+.|+++|+++++|++.++++|.+++ |++++ ++
T Consensus 242 ~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~------I~~~~-----~v 310 (522)
T cd03340 242 LKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRD------IFCAG-----RV 310 (522)
T ss_pred CCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCC------cEEEE-----eC
Confidence 44443 4567888999999999999999999999999885 35554 66
Q ss_pred chhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEE---EeCCeE------------EEEeCCCCHHHHHHHHHHH
Q 014061 331 KKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVT---VKSNST------------TIVADPYTKAEIQARIMQI 395 (431)
Q Consensus 331 r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~---i~~~~~------------~ii~g~~~~~~i~~ri~~l 395 (431)
++++|+|||++|||++++ +++++++++||+|+.|+ ++++++ |++-.+++...+++..+.+
T Consensus 311 ~~~~l~rIa~~tGa~ii~-----~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i 385 (522)
T cd03340 311 PEEDLKRVAQATGGSIQT-----TVSNITDDVLGTCGLFEERQVGGERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSL 385 (522)
T ss_pred CHHHHHHHHHHHCCEEee-----ccccCCccccccceEEEEEEECCEEEEEEECCCCCceEEEEEECCCHHHHHHHHHHH
Confidence 789999999999999999 68999999999999998 433333 3333345678899999999
Q ss_pred HHHHhhcC
Q 014061 396 KKDLAATD 403 (431)
Q Consensus 396 ~~~i~~~~ 403 (431)
++.+....
T Consensus 386 ~Dal~~~~ 393 (522)
T cd03340 386 HDAIMIVR 393 (522)
T ss_pred HHHHHHHH
Confidence 99987643
No 24
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-58 Score=489.99 Aligned_cols=330 Identities=22% Similarity=0.335 Sum_probs=284.3
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+...+.+++..|+.+|..++++|+|||||+||||||++ .|+++|||||+||||+|+++||+ |+|++++|++||++
T Consensus 3 ~~~~~~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~~~a~~qd~~ 78 (517)
T TIGR02342 3 DKDKPTDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPA----AKMLVELSKAQDIE 78 (517)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChH----HHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCCC------hH
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAGN------DE 202 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~~------~~ 202 (431)
+||||||+++|+++||+++.+|+++|+||+.|++||++|.+.++++|+++++|++ +.+.|.++|+||+++ .+
T Consensus 79 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~ 158 (517)
T TIGR02342 79 AGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSS 158 (517)
T ss_pred hCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999887 788899999999864 46
Q ss_pred HHHHHHHHHHHhhhc---CCc-----eEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccc
Q 014061 203 FIGNLIADAIIKIGA---DGV-----ILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQK 272 (431)
Q Consensus 203 ~l~~li~~Av~~vg~---~g~-----I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~ 272 (431)
.|++++++|+..+++ +|. |.+ ..|++++|+ ++++|++|+++|.++. +||..++||+|++++++
T Consensus 159 ~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds-~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~ 231 (517)
T TIGR02342 159 LLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDT-ELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQ 231 (517)
T ss_pred HHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhc-EEEeeEEEeccccccC------CCCccccCCcEEEEecC
Confidence 789999999999976 232 333 478899998 9999999999998842 47888999999999987
Q ss_pred cC-------------CH-----------HhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCC
Q 014061 273 IS-------------TV-----------KEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFG 328 (431)
Q Consensus 273 I~-------------~~-----------~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g 328 (431)
|+ ++ +++.++++++++.|+|||||+++|++++++.++.|.+.+ .+|+||+
T Consensus 232 Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~-~~I~av~----- 305 (517)
T TIGR02342 232 ISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAK-MKIMVVK----- 305 (517)
T ss_pred CCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhh-CCceEEe-----
Confidence 53 22 245678999999999999999999544444444444333 4688887
Q ss_pred CCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEE-Ee--C-------------CeEEEEeCCCCHHHHHHHH
Q 014061 329 DGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVT-VK--S-------------NSTTIVADPYTKAEIQARI 392 (431)
Q Consensus 329 ~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~-i~--~-------------~~~~ii~g~~~~~~i~~ri 392 (431)
++++++|+|||++|||++++ +++++++++||+|+.|+ ++ + ..+|++-+++++..++++.
T Consensus 306 ~v~~~~LerIa~~tGa~ii~-----~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~e 380 (517)
T TIGR02342 306 DIEREEVEFICKTIGCKPIA-----SIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAE 380 (517)
T ss_pred cCCHHHHHHHHHHHCCEEEc-----chhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHH
Confidence 67799999999999999999 68889999999999998 22 1 2345666667888999999
Q ss_pred HHHHHHHhhcC
Q 014061 393 MQIKKDLAATD 403 (431)
Q Consensus 393 ~~l~~~i~~~~ 403 (431)
+.+++.+....
T Consensus 381 r~i~DAl~~v~ 391 (517)
T TIGR02342 381 RSLHDALCVIR 391 (517)
T ss_pred HHHHHHHHHHH
Confidence 99999997653
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.2e-58 Score=488.92 Aligned_cols=323 Identities=20% Similarity=0.290 Sum_probs=286.7
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+...|.+++..|+.+|.+++++|+|||||+||||||++ .|+++|||||+|||++|+++||+ |+|++++|++||++
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~----akll~~~a~~q~~~ 85 (525)
T TIGR02344 10 KRESGRKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPA----AKSMIELSRTQDEE 85 (525)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHH----HHHHHHHHHhhhhh
Confidence 45678999999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCCC------hH
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAGN------DE 202 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~~------~~ 202 (431)
+||||||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++++++ +.+.|.++|+|++++ ++
T Consensus 86 ~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~ 165 (525)
T TIGR02344 86 VGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSD 165 (525)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999886 667899999887654 68
Q ss_pred HHHHHHHHHHHhhhcCC-----------ceEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEee
Q 014061 203 FIGNLIADAIIKIGADG-----------VILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLIT 269 (431)
Q Consensus 203 ~l~~li~~Av~~vg~~g-----------~I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~ 269 (431)
.|++++++|+..+++++ .|++ .+|++++|| ++++|++|++++.++ +|+.+++||+|+++
T Consensus 166 ~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS-~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll 237 (525)
T TIGR02344 166 LMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDS-CVLKGVMINKDVTHP-------KMRRYIENPRIVLL 237 (525)
T ss_pred HHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhc-CcccceEEecccCCC-------CCccccCCCCEEEE
Confidence 99999999999998653 1344 479999998 999999999997776 48889999999999
Q ss_pred ccccCC-------------HHhHHHH-----------HHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCC
Q 014061 270 DQKIST-------------VKEIVPL-----------LEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCP 325 (431)
Q Consensus 270 d~~I~~-------------~~~l~~~-----------le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~ 325 (431)
+++|+. ++++.++ ++++.+.|++|||++++|++.++++|..++ |+|++
T Consensus 238 ~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~------I~av~-- 309 (525)
T TIGR02344 238 DCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKAN------ISAIR-- 309 (525)
T ss_pred ecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCC------ceEEe--
Confidence 998754 4666555 448888999999999999999999998764 56654
Q ss_pred CCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCC-ceEEEE---eCCeEEEEeCCC------------CHHHHH
Q 014061 326 GFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGI-ARKVTV---KSNSTTIVADPY------------TKAEIQ 389 (431)
Q Consensus 326 ~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~-a~~V~i---~~~~~~ii~g~~------------~~~~i~ 389 (431)
++++++|+|||++|||++++ +++++++++||+ |+.|++ ++++++++++|+ +...++
T Consensus 310 ---~v~~~~LerIa~~tGa~ii~-----~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~~~~~TIlLrG~t~~~l~ 381 (525)
T TIGR02344 310 ---RVRKTDNNRIARACGATIVN-----RPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKDPKACTILLRGASKDVLN 381 (525)
T ss_pred ---cCCHHHHHHHHHHhCCeEec-----chhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCCCCEEEEEEEcCCHHHHH
Confidence 78899999999999999999 688999999999 998886 445666665554 577899
Q ss_pred HHHHHHHHHHhhc
Q 014061 390 ARIMQIKKDLAAT 402 (431)
Q Consensus 390 ~ri~~l~~~i~~~ 402 (431)
+..+.+++.+...
T Consensus 382 E~er~l~DAl~~v 394 (525)
T TIGR02344 382 EIERNLQDAMAVA 394 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.8e-58 Score=485.48 Aligned_cols=326 Identities=20% Similarity=0.303 Sum_probs=287.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+..+|.+++..|+.+|.+++++|++||||+||||||++ +| ++|||||+||+|+|+++||+ |+|++++|++||++
T Consensus 12 ~~~~~~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~----a~ll~~~a~~q~~~ 86 (522)
T TIGR02345 12 DTSQGKGQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPA----AKTLVDIAKSQDSE 86 (522)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChH----HHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999 88 99999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC-----ChHHHHHHHhhcCC------
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT-----GRDDIKAVASISAG------ 199 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~~~l~~va~ts~~------ 199 (431)
+||||||+||||++||+++.+++++|+||+.|++||+.|.+.++++|+++++|++ +.+.|.++|+||++
T Consensus 87 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~ 166 (522)
T TIGR02345 87 VGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAH 166 (522)
T ss_pred hCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999987 45789999999977
Q ss_pred ChHHHHHHHHHHHHhhhcCC------ceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecccc
Q 014061 200 NDEFIGNLIADAIIKIGADG------VILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKI 273 (431)
Q Consensus 200 ~~~~l~~li~~Av~~vg~~g------~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I 273 (431)
++++|++++++|+.++++++ .|....|++++|+ ++++|++|+++|.+|||.+ |+.+++||+|+++|++|
T Consensus 167 ~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~ds-~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~~L 241 (522)
T TIGR02345 167 EKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQDS-VLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNVEL 241 (522)
T ss_pred hHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHHhc-ceecceEEecccCcccccc----CCceeccceEEEEecCc
Confidence 57999999999999998652 2333489999999 8899999999999998754 67789999999999986
Q ss_pred C-------------CHHh-----------HHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCC
Q 014061 274 S-------------TVKE-----------IVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGD 329 (431)
Q Consensus 274 ~-------------~~~~-----------l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~ 329 (431)
+ ++++ +...++++.+.|+++|+++++|++.++++|..++ |++++ +
T Consensus 242 e~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~------I~~~~-----~ 310 (522)
T TIGR02345 242 ELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHN------IFCAG-----R 310 (522)
T ss_pred ccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCC------cEEEe-----c
Confidence 3 3333 2455777888999999999999999999999875 45554 6
Q ss_pred CchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEe---CC------------eEEEEeCCCCHHHHHHHHHH
Q 014061 330 GKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVK---SN------------STTIVADPYTKAEIQARIMQ 394 (431)
Q Consensus 330 ~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~---~~------------~~~ii~g~~~~~~i~~ri~~ 394 (431)
+.+++|++||++|||++++ +++++++++||+|+.|+.. ++ -+|++-++++...++++.+.
T Consensus 311 v~~~dl~ria~~tga~ii~-----~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~ 385 (522)
T TIGR02345 311 VSDEDLKRVVKACGGSIQS-----TTSDLEADVLGTCALFEERQIGSERYNYFTGCPHAKTCTIILRGGAEQFIEEAERS 385 (522)
T ss_pred CCHHHHHHHHHHhCCeEEc-----chhhCChhhccCCceEEEEEECCeEEEEEEcCCCCceEEEEEECCCHHHHHHHHHH
Confidence 6789999999999999999 6889999999999999852 22 34555555678899999999
Q ss_pred HHHHHhhcC
Q 014061 395 IKKDLAATD 403 (431)
Q Consensus 395 l~~~i~~~~ 403 (431)
+++.+....
T Consensus 386 i~DAl~~~~ 394 (522)
T TIGR02345 386 LHDAIMIVR 394 (522)
T ss_pred HHHHHHHHH
Confidence 999997653
No 27
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-56 Score=474.79 Aligned_cols=322 Identities=21% Similarity=0.315 Sum_probs=282.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-C--CceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-S--DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~--g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~ 128 (431)
+...|.+++..|+.||.+++++|+|||||+||+|||++ . |+++|||||+||+|+|+++||. |+|++++|++||
T Consensus 7 ~~~~~~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~----akll~~~a~~qd 82 (517)
T cd03336 7 QEEKGETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPA----AKVLVDISKVQD 82 (517)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999 5 9999999999999999999997 999999999999
Q ss_pred cccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC-----ChHHHHHHHhhcCC----
Q 014061 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT-----GRDDIKAVASISAG---- 199 (431)
Q Consensus 129 ~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~-----~~~~l~~va~ts~~---- 199 (431)
+++||||||+|+||++||+++.+++++|+||..|++||++|.+.++++|+++++|++ +.+.|.++|+|+++
T Consensus 83 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~ 162 (517)
T cd03336 83 DEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKIL 162 (517)
T ss_pred hHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999884 25689999997764
Q ss_pred --ChHHHHHHHHHHHHhhhcC---Cce--EEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccc
Q 014061 200 --NDEFIGNLIADAIIKIGAD---GVI--LIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQK 272 (431)
Q Consensus 200 --~~~~l~~li~~Av~~vg~~---g~I--~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~ 272 (431)
+++.|++++++|+..++.. ..| ....|++++|+ .+++|+++++++.++ |+++++||+|+++|++
T Consensus 163 ~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~ds-~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~ 233 (517)
T cd03336 163 TQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLKDS-YLDEGFLLDKKIGVN--------QPKRIENAKILIANTP 233 (517)
T ss_pred chhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCccce-EEEeeEEEecccCCC--------CCCeeccccEEEEecC
Confidence 3689999999999999632 233 44589999999 999999999986543 6888999999999997
Q ss_pred cC--------------CHHhH-----------HHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 273 IS--------------TVKEI-----------VPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 273 I~--------------~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
|+ +++++ ...++.|++.|++++++++.|++.++++|..++ |+|||+|+
T Consensus 234 le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~------I~av~~v~- 306 (517)
T cd03336 234 MDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAG------IMAIEHAD- 306 (517)
T ss_pred CCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------cEEEecCC-
Confidence 64 55554 235788999999999999999999999998875 68998776
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEE---eCCe------------EEEEeCCCCHHHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTV---KSNS------------TTIVADPYTKAEIQARI 392 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i---~~~~------------~~ii~g~~~~~~i~~ri 392 (431)
+++|+|||++|||++++ +++++++++||+|+.|+. ++++ +|++-+++++..+++..
T Consensus 307 ----~~~L~rIa~~tGa~ii~-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~e 377 (517)
T cd03336 307 ----FDGVERLALVTGGEIAS-----TFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAAGEACTIVLRGASQQILDEAE 377 (517)
T ss_pred ----HHHHHHHHHHhCCEEec-----ccCCCCcccccccceEEEEEECCeEEEEEEccCCCceEEEEEeCCCHHHHHHHH
Confidence 67899999999999999 789999999999999973 2333 44444556788999999
Q ss_pred HHHHHHHhhc
Q 014061 393 MQIKKDLAAT 402 (431)
Q Consensus 393 ~~l~~~i~~~ 402 (431)
+.+.+.+...
T Consensus 378 r~i~Dal~~~ 387 (517)
T cd03336 378 RSLHDALCVL 387 (517)
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-57 Score=481.02 Aligned_cols=321 Identities=22% Similarity=0.325 Sum_probs=280.1
Q ss_pred hhcc-HHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 53 ILFG-KESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 53 ~~~g-~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
..+| ++++..|+.+|..++++|++||||+||||||++ .|+++|||||+||+|+|+++||+ |+|++++|++||++
T Consensus 12 ~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~----akll~e~a~sqd~~ 87 (531)
T TIGR02346 12 HMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPA----AKLLVMASEMQENE 87 (531)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHH----HHHHHHHHHHHhhh
Confidence 3445 459999999999999999999999999999999 99999999999999999999999 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCc-ccC---ChHHHHHHHhhcCC-----Ch
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSF-PVT---GRDDIKAVASISAG-----ND 201 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~-~v~---~~~~l~~va~ts~~-----~~ 201 (431)
+||||||+|||+++||+++.+++++|+||..|++||+.|++.++++|+++++ +++ +.+.+.++|+++++ ++
T Consensus 88 ~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~ 167 (531)
T TIGR02346 88 IGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNE 167 (531)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchH
Confidence 9999999999999999999999999999999999999999999999999986 664 46789999988774 38
Q ss_pred HHHHHHHHHHHHhhhcCC--ceEE-------ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccc
Q 014061 202 EFIGNLIADAIIKIGADG--VILI-------ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQK 272 (431)
Q Consensus 202 ~~l~~li~~Av~~vg~~g--~I~i-------~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~ 272 (431)
+.|++++++|+.++++++ .+.+ ..|++++|+ ++++|++|++++. + |++.++||+|++++++
T Consensus 168 ~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds-~li~Gi~~~~~~~-~--------~~k~i~n~kI~l~~~~ 237 (531)
T TIGR02346 168 DFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNS-EVLKGMVFNREAE-G--------SVKRVKNAKVAVFSCP 237 (531)
T ss_pred HHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhc-eeEeeeEEeccCC-C--------CceeccCCCEEEEecC
Confidence 999999999999998764 3322 389999988 9999999999832 1 4667889999999887
Q ss_pred c-------------CCHH-----------hHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCC
Q 014061 273 I-------------STVK-----------EIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFG 328 (431)
Q Consensus 273 I-------------~~~~-----------~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g 328 (431)
+ ++++ ++.++++++++.|+||||++++|++.++++|..+ +|+|||+|+
T Consensus 238 l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~------~I~av~~~~-- 309 (531)
T TIGR02346 238 LDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKY------NIMVLKIPS-- 309 (531)
T ss_pred cCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHC------CcEEEecCC--
Confidence 3 3332 3567899999999999999999999999999865 479999887
Q ss_pred CCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEe---CC-------------eEEEEeCCCCHHHHHHHH
Q 014061 329 DGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVK---SN-------------STTIVADPYTKAEIQARI 392 (431)
Q Consensus 329 ~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~---~~-------------~~~ii~g~~~~~~i~~ri 392 (431)
..+|+|||.+|||++++ +++++++++||+|++|++. ++ ..||+-+++++..++++.
T Consensus 310 ---~~~l~~Ia~~tGa~ii~-----~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~e 381 (531)
T TIGR02346 310 ---KFELRRLCKTVGATPLA-----RLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIE 381 (531)
T ss_pred ---HHHHHHHHHHHCCEEec-----ccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHH
Confidence 56999999999999998 6888999999999999853 11 245555667888999999
Q ss_pred HHHHHHHhhcC
Q 014061 393 MQIKKDLAATD 403 (431)
Q Consensus 393 ~~l~~~i~~~~ 403 (431)
+.+++.+....
T Consensus 382 r~i~DAl~~~k 392 (531)
T TIGR02346 382 RAIDDGVNVIK 392 (531)
T ss_pred HHHHHHHHHHH
Confidence 99999997653
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.8e-56 Score=475.96 Aligned_cols=323 Identities=19% Similarity=0.312 Sum_probs=284.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-C-----CceEEecChHHHHhhhcccCchhhHHhHHHHHHHh
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-S-----DKLKVINDGVTIARAIELSDTIENAGAMLMQEVAS 125 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~-----g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~ 125 (431)
+...|.+++..|+.||..++++|+|||||+||||||++ . |+++|||||+||+|+|+++||. |+|++++|+
T Consensus 16 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~----akll~~~a~ 91 (533)
T PTZ00212 16 QEEKGETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPA----AKILVDISK 91 (533)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHH----HHHHHHHHH
Confidence 45668999999999999999999999999999999999 5 9999999999999999999996 999999999
Q ss_pred hcccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCC-----hHHHHHHHhhcCCC
Q 014061 126 KMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTG-----RDDIKAVASISAGN 200 (431)
Q Consensus 126 ~~~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~~~l~~va~ts~~~ 200 (431)
+||+++||||||+|+||++||+++.+++++|+||..|++||++|.+.++++|+++++|+++ .++|.++|+|++++
T Consensus 92 ~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~s 171 (533)
T PTZ00212 92 TQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSS 171 (533)
T ss_pred hhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999864 57899999987653
Q ss_pred ------hHHHHHHHHHHHHhhhcC---Cc--eEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEee
Q 014061 201 ------DEFIGNLIADAIIKIGAD---GV--ILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLIT 269 (431)
Q Consensus 201 ------~~~l~~li~~Av~~vg~~---g~--I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~ 269 (431)
.+.|++++++|+..+... .. |.+.+|++++|+ .+++|+++++++.++ |+.+++||+|+++
T Consensus 172 k~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds-~lv~G~v~~~~~~~~--------~~~~i~n~kIll~ 242 (533)
T PTZ00212 172 KLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDS-YLEDGFILEKKIGVG--------QPKRLENCKILVA 242 (533)
T ss_pred cccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcccc-EEEEeEEEecccCCC--------CCccccCCcEEEE
Confidence 488999999999988542 22 444689999999 999999999986543 6889999999999
Q ss_pred cccc--------------CCHHhHH-----------HHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecC
Q 014061 270 DQKI--------------STVKEIV-----------PLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKC 324 (431)
Q Consensus 270 d~~I--------------~~~~~l~-----------~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~ 324 (431)
|++| ++++++. ..++.|.+.|+++++++++|++.++++|.+++ |+|||
T Consensus 243 ~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~------I~avr- 315 (533)
T PTZ00212 243 NTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAG------IMAIE- 315 (533)
T ss_pred eCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCC------CEEEe-
Confidence 9986 5665542 35778899999999999999999999999875 68887
Q ss_pred CCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEE---EeCCeEEEEeC------------CCCHHHHH
Q 014061 325 PGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVT---VKSNSTTIVAD------------PYTKAEIQ 389 (431)
Q Consensus 325 ~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~---i~~~~~~ii~g------------~~~~~~i~ 389 (431)
++++++|+|||++|||++++ +++++++++||+|+.|+ +++++++++.+ +++...++
T Consensus 316 ----~v~~~~l~rIa~~tGa~iis-----~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~~~~~TI~lrG~t~~~l~ 386 (533)
T PTZ00212 316 ----HADFDGMERLAAALGAEIVS-----TFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAKGEACTIVLRGASTHILD 386 (533)
T ss_pred ----cCCHHHHHHHHHHhCCEEee-----cCCCCCHHHccCCceEEEEEECCeEEEEEEccCCCCEEEEEEECCChhHHH
Confidence 45578999999999999999 68999999999999998 55566666654 44677899
Q ss_pred HHHHHHHHHHhhcC
Q 014061 390 ARIMQIKKDLAATD 403 (431)
Q Consensus 390 ~ri~~l~~~i~~~~ 403 (431)
++.+.+++.+....
T Consensus 387 E~er~i~DAl~vv~ 400 (533)
T PTZ00212 387 EAERSLHDALCVLS 400 (533)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997653
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.4e-57 Score=473.14 Aligned_cols=306 Identities=22% Similarity=0.336 Sum_probs=273.5
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+...|.+++..|+.||.+++++++|||||+||+|||++ .|+++|||||+||+|+|+++||. |+|++++|++||++
T Consensus 10 ~~~~~~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~q~~~ 85 (480)
T cd03337 10 KRESGRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDEE 85 (480)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChH----HHHHHHHHHhHHHH
Confidence 35668899999999999999999999999999999999 99999999999999999999997 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCC------ChH
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAG------NDE 202 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~------~~~ 202 (431)
+||||||+++|+++||+++.+++++|+||..|++||++|.+.++++|++++++++ +.+.|.++|+|+++ +++
T Consensus 86 ~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~ 165 (480)
T cd03337 86 VGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSD 165 (480)
T ss_pred hCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHH
Confidence 9999999999999999999999999999999999999999999999999999987 78889999999987 568
Q ss_pred HHHHHHHHHHHhhhcC--Cc---------eEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEee
Q 014061 203 FIGNLIADAIIKIGAD--GV---------ILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLIT 269 (431)
Q Consensus 203 ~l~~li~~Av~~vg~~--g~---------I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~ 269 (431)
.|++++++|+..++++ +. |++ .+|+++.|+ ++++|++|++++.+| +|+.+++||+|+++
T Consensus 166 ~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds-~li~Gvvi~k~~~~~-------~m~~~~~n~kIlll 237 (480)
T cd03337 166 LMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDS-RVLDGVMLNKDVTHP-------KMRRRIENPRIVLL 237 (480)
T ss_pred HHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhc-ccccceEEeccCCCC-------CCCcEecCCCEEEE
Confidence 9999999999999764 31 334 469999998 999999999999887 48999999999999
Q ss_pred ccccCCHHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeec
Q 014061 270 DQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349 (431)
Q Consensus 270 d~~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~ 349 (431)
+++|+. |||++++|++.|+++|.+|+ |+||+ ++++++|+|||++|||++++
T Consensus 238 ~~~Le~-----------------lvi~~k~I~d~al~~L~~~~------I~~v~-----~v~~~~L~rIa~~tGa~ii~- 288 (480)
T cd03337 238 DCPLEY-----------------LVITEKGVSDLAQHYLVKAG------ITALR-----RVRKTDNNRIARACGATIVN- 288 (480)
T ss_pred ecCcce-----------------EEEeCCCccHHHHHHHHHCC------cEEEE-----eCCHHHHHHHHHHHCCEEec-
Confidence 999876 99999999999999999884 67887 56799999999999999999
Q ss_pred CCCccccCCCCCCCCCc-eEEEE---eCCeEEEEeC------------CCCHHHHHHHHHHHHHHHhhc
Q 014061 350 ELGLTLAGATSDQLGIA-RKVTV---KSNSTTIVAD------------PYTKAEIQARIMQIKKDLAAT 402 (431)
Q Consensus 350 ~~~~~l~~~~~~~LG~a-~~V~i---~~~~~~ii~g------------~~~~~~i~~ri~~l~~~i~~~ 402 (431)
+++++++++||+| +.+++ +++.++++++ +++...+++..+.+.+.+...
T Consensus 289 ----~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~ 353 (480)
T cd03337 289 ----RPEELTESDVGTGAGLFEVKKIGDEYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVA 353 (480)
T ss_pred ----chhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 6888999999994 44442 2344445444 446788999999999998764
No 31
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.2e-56 Score=465.02 Aligned_cols=307 Identities=35% Similarity=0.515 Sum_probs=278.6
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDL 130 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~ 130 (431)
+..++++++..|++||..+++++++||||+||+|||++ .|+++|||||+||+|+|+++||. |+|+++++++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~----a~ll~~~~~~~~~~ 77 (464)
T cd00309 2 EREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPA----AKLLVEVAKSQDDE 77 (464)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHH----HHHHHHHHHHHHhH
Confidence 35678999999999999999999999999999999999 99999999999999999999997 99999999999999
Q ss_pred cCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcc--cCChHHHHHHHhhcCC------ChH
Q 014061 131 AGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFP--VTGRDDIKAVASISAG------NDE 202 (431)
Q Consensus 131 vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~--v~~~~~l~~va~ts~~------~~~ 202 (431)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++ +.+.+.+.++|+|+++ +++
T Consensus 78 ~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~ 157 (464)
T cd00309 78 VGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDD 157 (464)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchH
Confidence 99999999999999999999999999999999999999999999999999998 6688899999999998 789
Q ss_pred HHHHHHHHHHHhhhc------CCceEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccC
Q 014061 203 FIGNLIADAIIKIGA------DGVILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKIS 274 (431)
Q Consensus 203 ~l~~li~~Av~~vg~------~g~I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~ 274 (431)
++++++++|+.++++ .+.|++ ..|++++|| ++++|++|+++|.+|+ |+.+++||+|++++++|+
T Consensus 158 ~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~ds-~li~Gi~~~~~~~~~~-------m~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 158 FLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDS-ELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLE 229 (464)
T ss_pred HHHHHHHHHHHHhccccCccccceEEEEecCCCCcccc-eeeeeEEEecCCCCCC-------CceeecCceEEEEecCcc
Confidence 999999999999988 466666 478999999 9999999999999997 588999999999999998
Q ss_pred CHHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCcc
Q 014061 275 TVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLT 354 (431)
Q Consensus 275 ~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~ 354 (431)
. |+|++++|++.|+++|..+ +|+||+. +++++|+|||++|||++++ +
T Consensus 230 ~-----------------lIi~~~~I~~~al~~L~~~------~I~~v~~-----~~~~~L~~Ia~~tGa~ii~-----~ 276 (464)
T cd00309 230 Y-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVS-----R 276 (464)
T ss_pred e-----------------EEecCCCcCHHHHHHHHHC------CeEEEEe-----CCHHHHHHHHHHhCCEEec-----c
Confidence 7 7788888999999999985 4688874 5699999999999999999 6
Q ss_pred ccCCCCCCCCCceEEEEeC---C------------eEEEEeCCCCHHHHHHHHHHHHHHHhhcC
Q 014061 355 LAGATSDQLGIARKVTVKS---N------------STTIVADPYTKAEIQARIMQIKKDLAATD 403 (431)
Q Consensus 355 l~~~~~~~LG~a~~V~i~~---~------------~~~ii~g~~~~~~i~~ri~~l~~~i~~~~ 403 (431)
++++++++||+|+.|++.+ + -+|++-++++...++++.+.+.+.+....
T Consensus 277 ~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~ 340 (464)
T cd00309 277 LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVR 340 (464)
T ss_pred cccCCcccCccccEEEEEEEcCeeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998642 2 23444445678899999999999887643
No 32
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=9.6e-55 Score=461.26 Aligned_cols=323 Identities=24% Similarity=0.337 Sum_probs=280.9
Q ss_pred hhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-C--CceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcc
Q 014061 52 KILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-S--DKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMN 128 (431)
Q Consensus 52 ~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~--g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~ 128 (431)
+...|.+++..|+.|+.+++++|+|||||+||+|||++ . |+++|||||+||||+|+++||. |+|++++|++||
T Consensus 8 ~~~~~~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~----akll~~~a~~qd 83 (519)
T TIGR02341 8 QEERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPA----AKVLVDMSKVQD 83 (519)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChH----HHHHHHHHHHhH
Confidence 34567889999999999999999999999999999999 5 9999999999999999999996 999999999999
Q ss_pred cccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCC-----hHHHHHHHhhcCCC---
Q 014061 129 DLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTG-----RDDIKAVASISAGN--- 200 (431)
Q Consensus 129 ~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~~~l~~va~ts~~~--- 200 (431)
+++||||||+|||+++||+++.+++++|+||+.|++||+.|.+.++++|+++++|+++ .++|.++|+|++++
T Consensus 84 ~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~ 163 (519)
T TIGR02341 84 DEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKIL 163 (519)
T ss_pred hhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999853 47899999998764
Q ss_pred ---hHHHHHHHHHHHHhhhcC---CceEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccc
Q 014061 201 ---DEFIGNLIADAIIKIGAD---GVILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQK 272 (431)
Q Consensus 201 ---~~~l~~li~~Av~~vg~~---g~I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~ 272 (431)
.+.|++++++|+..+... ..|.+ ..|++++|+ .+++|+++++++.++ |+.+++||+|+++|++
T Consensus 164 ~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~~s-~l~~G~v~~~~~~~~--------~~~~~~n~~Ili~~~~ 234 (519)
T TIGR02341 164 SQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLNDS-YLDEGFLLEKKIGVN--------QPKRIENAKILIANTP 234 (519)
T ss_pred hhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcccc-eEEeeEEEeccCCCC--------CceeeccccEEEEecC
Confidence 378899999999888432 23555 389999999 999999999986442 6788999999999998
Q ss_pred cCC--------------HHhH-----------HHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 273 IST--------------VKEI-----------VPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 273 I~~--------------~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
|+. ++++ ...++.|++.|++++++++.|++.++++|..++ |+||++|+
T Consensus 235 Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~------I~~v~~~~- 307 (519)
T TIGR02341 235 MDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAG------VMAIEHAD- 307 (519)
T ss_pred CCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCC------cEEEecCC-
Confidence 753 3233 234778899999999999999999999998774 68888776
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEE---eCC------------eEEEEeCCCCHHHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTV---KSN------------STTIVADPYTKAEIQARI 392 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i---~~~------------~~~ii~g~~~~~~i~~ri 392 (431)
+++|+|||++|||++++ +++++++++||+|+.|+. +++ .+||+-+++++..++++.
T Consensus 308 ----~~~l~~ia~~tGa~ii~-----~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~TIllrG~t~~~l~E~e 378 (519)
T TIGR02341 308 ----FEGIERLALVTGGEIVS-----TFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKLGEACTIVLRGATQQILDESE 378 (519)
T ss_pred ----HHHHHHHHHHhCCEEec-----ccccCCccccccCceEEEEEECCEEEEEEEcCCCCCEEEEEEeCCCHHHHHHHH
Confidence 67999999999999999 688899999999998874 223 344555566888999999
Q ss_pred HHHHHHHhhcC
Q 014061 393 MQIKKDLAATD 403 (431)
Q Consensus 393 ~~l~~~i~~~~ 403 (431)
+.+++.+....
T Consensus 379 r~i~Dal~~~~ 389 (519)
T TIGR02341 379 RSLHDALCVLS 389 (519)
T ss_pred HHHHHHHHHHH
Confidence 99999997653
No 33
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.7e-55 Score=459.80 Aligned_cols=304 Identities=21% Similarity=0.314 Sum_probs=269.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccccCCC
Q 014061 56 GKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDG 134 (431)
Q Consensus 56 g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~vGDG 134 (431)
+++++..|+.+|.+++++|++||||+||+|||++ +|+++|||||+||+|+|+++||+ |+|++++|++||+++|||
T Consensus 6 ~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~----a~ll~~~a~~~~~~~GDG 81 (472)
T cd03341 6 LEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPA----AKLLVMASQMQEEEIGDG 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHH----HHHHHHHHHHHhhhhCCC
Confidence 5789999999999999999999999999999999 99999999999999999999999 999999999999999999
Q ss_pred cchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcc-cC---ChHHHHHHHhhcC-----CChHHHH
Q 014061 135 TTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFP-VT---GRDDIKAVASISA-----GNDEFIG 205 (431)
Q Consensus 135 TTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~-v~---~~~~l~~va~ts~-----~~~~~l~ 205 (431)
|||+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ ++ +.+.+.+++++++ +++++|+
T Consensus 82 TTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 82 TNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999865 43 4567888888875 3578999
Q ss_pred HHHHHHHHhhhcC--Cce-------EEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCH
Q 014061 206 NLIADAIIKIGAD--GVI-------LIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTV 276 (431)
Q Consensus 206 ~li~~Av~~vg~~--g~I-------~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~ 276 (431)
+++++|+.+++++ |.+ ...+|++++|| ++++|++|++... .++++++||+|++++++|+.
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds-~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le~- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDS-KVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFDI- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccc-eEEeeEEEccccC---------CCceeccCCcEEEEeccccC-
Confidence 9999999999875 433 23489999999 9999999987532 24578999999999999987
Q ss_pred HhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCcccc
Q 014061 277 KEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLA 356 (431)
Q Consensus 277 ~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~ 356 (431)
|+||||++++|++.++++|..+ +|+|||+|+ +++|+|||++|||++++ +++
T Consensus 231 -------------g~~lvi~~~~I~d~al~~l~~~------~I~av~~~~-----~~~Le~Ia~~tGa~ii~-----~~~ 281 (472)
T cd03341 231 -------------GVNVIVAGGSVGDLALHYCNKY------GIMVIKINS-----KFELRRLCRTVGATPLP-----RLG 281 (472)
T ss_pred -------------CCeEEEECCCCCHHHHHHHHHC------CeEEEEeCC-----HHHHHHHHHHhCCEEec-----ccc
Confidence 8999999999999999998764 579999877 78999999999999999 688
Q ss_pred CCCCCCCCCceEEEEeC---CeEEEEeCC-------------CCHHHHHHHHHHHHHHHhhcC
Q 014061 357 GATSDQLGIARKVTVKS---NSTTIVADP-------------YTKAEIQARIMQIKKDLAATD 403 (431)
Q Consensus 357 ~~~~~~LG~a~~V~i~~---~~~~ii~g~-------------~~~~~i~~ri~~l~~~i~~~~ 403 (431)
++++++||+|++|++.+ ++++++.++ ++...++++.+.+++.+....
T Consensus 282 ~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~ 344 (472)
T cd03341 282 APTPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFK 344 (472)
T ss_pred cCCHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999998754 555555554 356789999999999987653
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-54 Score=418.42 Aligned_cols=326 Identities=20% Similarity=0.309 Sum_probs=288.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 51 k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
.+-..|.-..-+|+.+|..+++.++|||||+||||+|++ .|+.+|+|||+||+|.|++-||+ ||.|+++|++||.
T Consensus 13 td~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPa----aktlVdia~sQDa 88 (543)
T KOG0361|consen 13 TDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPA----AKTLVDIARSQDA 88 (543)
T ss_pred cCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChh----HHHHHHHHhhccc
Confidence 444567778889999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--C----hHHHHHHHhhcCCC---
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--G----RDDIKAVASISAGN--- 200 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~----~~~l~~va~ts~~~--- 200 (431)
|+||||||+|+||+++|+++..+++.|+||..|+++|++|...+++.|+++++.++ + ++.|.++|.|++++
T Consensus 89 EVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI 168 (543)
T KOG0361|consen 89 EVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLI 168 (543)
T ss_pred cccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999998876 2 45688999998754
Q ss_pred ---hHHHHHHHHHHHHhhhcC---Cc--eEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccc
Q 014061 201 ---DEFIGNLIADAIIKIGAD---GV--ILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQK 272 (431)
Q Consensus 201 ---~~~l~~li~~Av~~vg~~---g~--I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~ 272 (431)
.++|++|++||+..+..+ .. |++.+||+++|| .+++|+.|++.|.+..| +..|+.+.||||+++|..
T Consensus 169 ~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS-~lv~GVAFkKtFsYAGf----EqqPKk~~NpkIl~LnvE 243 (543)
T KOG0361|consen 169 RQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDS-LLVNGVAFKKTFSYAGF----EQQPKKFLNPKILLLNVE 243 (543)
T ss_pred hhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchh-hhccceeeeehccccch----hhCccccCCceEEEEeee
Confidence 689999999999998743 22 677899999999 89999999999999887 457888999999999975
Q ss_pred c-------------CCHHhH-----------HHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCC
Q 014061 273 I-------------STVKEI-----------VPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFG 328 (431)
Q Consensus 273 I-------------~~~~~l-----------~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g 328 (431)
+ .+++++ ...|++|..+|+++|+..-.|.|.|.+||+.+.+ .+-|
T Consensus 244 LElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdi-----------FCAG 312 (543)
T KOG0361|consen 244 LELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDI-----------FCAG 312 (543)
T ss_pred eeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCc-----------eecC
Confidence 3 455554 3568899999999999999999999999998764 2458
Q ss_pred CCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEE---e------------CCeEEEEeCCCCHHHHHHHHH
Q 014061 329 DGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTV---K------------SNSTTIVADPYTKAEIQARIM 393 (431)
Q Consensus 329 ~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i---~------------~~~~~ii~g~~~~~~i~~ri~ 393 (431)
|+..+||.|+..+|||++++ +..++.++.||.|..++. + ...+|++..+|-.+.+++-.+
T Consensus 313 RV~~eDl~Rv~~acGGsi~t-----t~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eR 387 (543)
T KOG0361|consen 313 RVPEEDLNRVMQACGGSIQT-----TVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETER 387 (543)
T ss_pred cCCHHHHHHHHHhcCcchhh-----hhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhh
Confidence 99999999999999999999 688999999999999973 3 236666666667788999999
Q ss_pred HHHHHHhh
Q 014061 394 QIKKDLAA 401 (431)
Q Consensus 394 ~l~~~i~~ 401 (431)
+|-++|-.
T Consensus 388 SlHDAImI 395 (543)
T KOG0361|consen 388 SLHDAIMI 395 (543)
T ss_pred hhhhHHHH
Confidence 99888854
No 35
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-53 Score=414.56 Aligned_cols=330 Identities=21% Similarity=0.330 Sum_probs=288.8
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 51 k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
++....++.|.+|+.+.+.++|+++|||||+||||||.. .|+++|||||+||||.|++-||+ |+||++++..||.
T Consensus 19 ~d~ekp~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~----akmLvelS~aQD~ 94 (534)
T KOG0358|consen 19 KDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPA----AKMLVELSAAQDS 94 (534)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChH----HHHHHHhhhhccc
Confidence 344456899999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCCC------h
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAGN------D 201 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~~------~ 201 (431)
++||||||+||||++||+.+.+|+.+|+||+.|...|+.|.+.++++|.+++.|++ +++.|.+-|+||+|+ .
T Consensus 95 eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s 174 (534)
T KOG0358|consen 95 EAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYS 174 (534)
T ss_pred cccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999998875 788899999999874 4
Q ss_pred HHHHHHHHHHHHhhhc-CC-------ceEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecc
Q 014061 202 EFIGNLIADAIIKIGA-DG-------VILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQ 271 (431)
Q Consensus 202 ~~l~~li~~Av~~vg~-~g-------~I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~ 271 (431)
..+++|.++|+.++-. +. .|++ +.||+++|+ ++++|++|++..... ..|...+++||.+..+
T Consensus 175 ~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDt-e~i~glvl~~~~~~~-------~gptriekAkIglIQF 246 (534)
T KOG0358|consen 175 SLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDT-ELIKGLVLTQKASKS-------AGPTRIEKAKIGLIQF 246 (534)
T ss_pred cccchHHHHHHHhccCcccccccchhhhhhHHhhCCccchh-hhhcceEEeeecccC-------CCcchhhhceeeEEEE
Confidence 6788999999998743 21 2333 689999999 999999999765432 1567788899998888
Q ss_pred ccCCH------------------------HhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 272 KISTV------------------------KEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 272 ~I~~~------------------------~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
.|+.+ +.+++++++|++.|++++++|++|-.+|++-|+.|.+. .++||+||
T Consensus 247 ~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~-klkimvik---- 321 (534)
T KOG0358|consen 247 QISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLA-KLKIMVIK---- 321 (534)
T ss_pred EecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHH-hCcEEEEc----
Confidence 75432 23678999999999999999999999988888887664 57899998
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEe-----------------CCeEEEEeCCCCHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVK-----------------SNSTTIVADPYTKAEIQA 390 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~-----------------~~~~~ii~g~~~~~~i~~ 390 (431)
++.++++|.+|+.+|+++++ ++|.++++.||+|+.++.. ...++++-.+.++-.+++
T Consensus 322 -dieRediefick~l~c~Pia-----~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleE 395 (534)
T KOG0358|consen 322 -DIEREDIEFICKTLGCKPIA-----DIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEE 395 (534)
T ss_pred -cccHhhHHHHHhhcCCeecc-----hhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHH
Confidence 66799999999999999999 7999999999999888643 235666666678899999
Q ss_pred HHHHHHHHHhhcC
Q 014061 391 RIMQIKKDLAATD 403 (431)
Q Consensus 391 ri~~l~~~i~~~~ 403 (431)
-.++|.++++-..
T Consensus 396 aeRSlhDALCVir 408 (534)
T KOG0358|consen 396 AERSLHDALCVIR 408 (534)
T ss_pred HhhhhhhhhHHHH
Confidence 9999999998754
No 36
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=1.4e-50 Score=425.26 Aligned_cols=305 Identities=29% Similarity=0.478 Sum_probs=271.4
Q ss_pred HHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccccCCCcchHHHhHHHHHHh
Q 014061 70 LADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKS 148 (431)
Q Consensus 70 la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~vGDGTTt~vvLa~~Ll~~ 148 (431)
|+++|++||||+||+|||++ .|+++|||||+||+++++++||+ |+|+++++++|++++||||||+++|+++||++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~----~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~ 76 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPI----AKLLVEASKSQDEEVGDGTTSVVLLACELLRN 76 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHH----HHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccch----hhhHHHhHHHHHhhhccccceeeecccchhhh
Confidence 68999999999999999999 99999999999999999999999 99999999999999999999999999999999
Q ss_pred hhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCCh-HHHHHHHhhcCCCh------HHHHHHHHHHHHhhhcC---
Q 014061 149 GMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGR-DDIKAVASISAGND------EFIGNLIADAIIKIGAD--- 218 (431)
Q Consensus 149 ~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~~l~~va~ts~~~~------~~l~~li~~Av~~vg~~--- 218 (431)
+.+++++|+||..|++||+.|.+.+++.|+++++++++. +.+.++|+|+++++ +.|++++++|+..+..+
T Consensus 77 ~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~ 156 (485)
T PF00118_consen 77 ALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDL 156 (485)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHG
T ss_pred hhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999876 89999999999876 89999999999444321
Q ss_pred Cce--EEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHh------------------
Q 014061 219 GVI--LIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKE------------------ 278 (431)
Q Consensus 219 g~I--~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~------------------ 278 (431)
+.+ ....|++.+|| ++++|++|+++|.++ +|+.+++||+|++++++|+..+.
T Consensus 157 ~~i~i~~i~g~~~~dS-~li~Giv~~~~~~~~-------~~~~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~ 228 (485)
T PF00118_consen 157 DNIKIIKIPGGSISDS-ELINGIVLDKGFSSP-------NMPKKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSK 228 (485)
T ss_dssp GGEEEEEEESSSSGGE-EEESEEEESSSBSST-------TSBSEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHH
T ss_pred cchhhhhhcccccccc-ccccceeeecccccc-------ccccccccceEEeeecccccccccccccchhhHHHHHHHHh
Confidence 223 33567788998 999999999999987 47888999999999999876665
Q ss_pred -----HHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCc
Q 014061 279 -----IVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGL 353 (431)
Q Consensus 279 -----l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~ 353 (431)
+.++++++.+.|+++||++++|++.++++|..|++ .++ .++++++|++||++|||++++
T Consensus 229 ~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I------~~i-----~~v~~~~l~~i~~~tg~~ii~----- 292 (485)
T PF00118_consen 229 QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGI------LVI-----RRVSKEDLERIARATGASIIS----- 292 (485)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTH------EEE-----SSEHHHHHHHHHHHHTSBEBS-----
T ss_pred hhhhhhccccceEeeeccceeeeecccccccchhhhhhhh------hcc-----ccchHHHHHhhhcccCCcEec-----
Confidence 88999999999999999999999999999998874 333 466799999999999999999
Q ss_pred cccCCCCCCCCCceEE---EEeCCeEEEEeC--------------CCCHHHHHHHHHHHHHHHhhc
Q 014061 354 TLAGATSDQLGIARKV---TVKSNSTTIVAD--------------PYTKAEIQARIMQIKKDLAAT 402 (431)
Q Consensus 354 ~l~~~~~~~LG~a~~V---~i~~~~~~ii~g--------------~~~~~~i~~ri~~l~~~i~~~ 402 (431)
++++++++++|+|+.| ++++++++++.+ +++...++++.+.+.+.+...
T Consensus 293 ~~~~l~~~~lG~~~~v~~~~i~~~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~ 358 (485)
T PF00118_consen 293 SLDDLSDEDLGFCKSVEEREIGNKKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVL 358 (485)
T ss_dssp SCGGSTGGGSEEEEEEEEEEETSSEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhcccccccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHH
Confidence 5788888889999999 566777777762 457889999999999999764
No 37
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-48 Score=390.43 Aligned_cols=327 Identities=23% Similarity=0.307 Sum_probs=279.6
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 51 k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
-+...|+..|..|..|+..++++|++||||-|+|||+++ +|++++||||+|||+.+.++||+ +|+|++.++.||+
T Consensus 12 ge~~sg~~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa----~KiLvelaq~qd~ 87 (545)
T KOG0360|consen 12 GERLSGERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPA----AKVLVELAQLQDE 87 (545)
T ss_pred CCcccchhhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchH----HHHHHHHHHhccc
Confidence 345679999999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHc-cCcccC--ChHHHHHHHhhcCCC------
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ-KSFPVT--GRDDIKAVASISAGN------ 200 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~-~s~~v~--~~~~l~~va~ts~~~------ 200 (431)
++|||||+++++|++||+++.+|+..++||+.+++||+.|+..+++++.+ .+.|++ .++.|.++|+|++++
T Consensus 88 evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~d 167 (545)
T KOG0360|consen 88 EVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMD 167 (545)
T ss_pred cccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccc
Confidence 99999999999999999999999999999999999999999999999976 477777 578999999998753
Q ss_pred hHHHHHHHHHHHHhhhc---CC---------ceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEe
Q 014061 201 DEFIGNLIADAIIKIGA---DG---------VILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLI 268 (431)
Q Consensus 201 ~~~l~~li~~Av~~vg~---~g---------~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll 268 (431)
.+++++++++|+..+.- +| .|.+-.|++..|| .++.|+.++....+.. |+..+.|+||++
T Consensus 168 s~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS-~l~~GyaLnc~~asq~-------m~~~i~~~Kiac 239 (545)
T KOG0360|consen 168 SDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIES-MLLPGYALNCSVASQM-------MPLRIKNAKIAC 239 (545)
T ss_pred hHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhh-eeecceeeeccHhhhc-------cccccccceeee
Confidence 58999999999987732 23 1344589999999 9999999999877754 888899999999
Q ss_pred ecccc-------------CCHHhHH-----------HHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecC
Q 014061 269 TDQKI-------------STVKEIV-----------PLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKC 324 (431)
Q Consensus 269 ~d~~I-------------~~~~~l~-----------~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~ 324 (431)
+|+.+ .+++++. ..+++|...|+|+|+++++|||.++++|++.+ ++|||
T Consensus 240 ld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veag------amAVr- 312 (545)
T KOG0360|consen 240 LDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAG------AMAVR- 312 (545)
T ss_pred EecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcc------hhhhH-
Confidence 99863 5555432 35678999999999999999999999999875 46654
Q ss_pred CCCCCCchhhHHHHHHHhCCeEeecCCCccc-cCCCCCCCCCceEEE---EeCCeEEEEeC-----------CCCHHHHH
Q 014061 325 PGFGDGKKALLQDIALMTGADFLSGELGLTL-AGATSDQLGIARKVT---VKSNSTTIVAD-----------PYTKAEIQ 389 (431)
Q Consensus 325 ~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l-~~~~~~~LG~a~~V~---i~~~~~~ii~g-----------~~~~~~i~ 389 (431)
|+++++|++||++||++++++..++.- |.+++..+|+|++|. +.+|++.++.| +.|...++
T Consensus 313 ----R~~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka~~aSiILrgaNd~~~D 388 (545)
T KOG0360|consen 313 ----RCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKATSASIILRGANDFMLD 388 (545)
T ss_pred ----HHHHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHHHHhcccceeEEeccCccceeeEEEecCCcccHh
Confidence 888999999999999999996655543 457888999999996 45555554443 45556677
Q ss_pred HHHHHHHHHHh
Q 014061 390 ARIMQIKKDLA 400 (431)
Q Consensus 390 ~ri~~l~~~i~ 400 (431)
+..+.+.+.++
T Consensus 389 Emers~hdaL~ 399 (545)
T KOG0360|consen 389 EMERSLHDALC 399 (545)
T ss_pred hhccchhhHHH
Confidence 77777766664
No 38
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-48 Score=376.57 Aligned_cols=320 Identities=22% Similarity=0.343 Sum_probs=277.4
Q ss_pred hhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec---CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 53 ILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE---SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 53 ~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~---~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
...|+.||.+.+-|...+.|+|||||||+||+||+.. .|.+.+||||+||||++.+.+|+ ||+|+++++-||+
T Consensus 13 eErge~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpa----AkvLv~~S~vQD~ 88 (527)
T KOG0363|consen 13 EERGENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPA----AKVLVDISKVQDD 88 (527)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCch----hhheecccccccc
Confidence 4458999999999999999999999999999999987 57899999999999999999998 9999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCC-----hHHHHHHHhhcCCC----
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTG-----RDDIKAVASISAGN---- 200 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~-----~~~l~~va~ts~~~---- 200 (431)
|+|||||+++|||++||+|+.+|+.+.+||+.|+.||+.|...+++.|.+.++.-.+ +++|+++|+|.+++
T Consensus 89 EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLs 168 (527)
T KOG0363|consen 89 EVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILS 168 (527)
T ss_pred ccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988875432 67999999998653
Q ss_pred --hHHHHHHHHHHHHhhhcCCc-----eEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecccc
Q 014061 201 --DEFIGNLIADAIIKIGADGV-----ILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKI 273 (431)
Q Consensus 201 --~~~l~~li~~Av~~vg~~g~-----I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I 273 (431)
.++|+++.++|+.++...+. |.+..||+++|| .+=+|+.+++.+-. ..|+.++||+||+.|.++
T Consensus 169 q~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~dS-fLDeGFlL~K~igv--------~qpkriena~iLIANT~m 239 (527)
T KOG0363|consen 169 QDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLEDS-FLDEGFLLDKKIGV--------NQPKRIENAKILIANTPM 239 (527)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccccc-cccccceeccccCC--------CCcccccccceEEecCCC
Confidence 68999999999999865432 445699999999 88999999886432 357789999999999763
Q ss_pred C--------------CH-----------HhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCC
Q 014061 274 S--------------TV-----------KEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFG 328 (431)
Q Consensus 274 ~--------------~~-----------~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g 328 (431)
. +. +.+...+++|.++|+|+.|-..-|-+...++|... +|+++....
T Consensus 240 DtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~da------gi~aIEHAD-- 311 (527)
T KOG0363|consen 240 DTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADA------GIMAIEHAD-- 311 (527)
T ss_pred cccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhc------Ccceeeccc--
Confidence 2 22 13567899999999999999888888888888764 367776444
Q ss_pred CCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEE---Ee------------CCeEEEEeCCCCHHHHHHHHH
Q 014061 329 DGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVT---VK------------SNSTTIVADPYTKAEIQARIM 393 (431)
Q Consensus 329 ~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~---i~------------~~~~~ii~g~~~~~~i~~ri~ 393 (431)
-+-.||++..|||.++| ++++++..+||+|+.++ ++ .+.|||+..+.+++.+++-.+
T Consensus 312 ---FdGiERLalvtGGeI~S-----TFd~p~~~klG~C~~IeeimiGed~li~FSGv~~GeActIVlrGat~q~LDEaeR 383 (527)
T KOG0363|consen 312 ---FDGIERLALVTGGEIVS-----TFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKLGEACTIVLRGATQQILDEAER 383 (527)
T ss_pred ---chhHHHHhhcccceeee-----ccCCcchhccccchhhHHHhcCccceeeecccccccceEEEEecccHHHHHHHHH
Confidence 57889999999999999 79999999999999986 33 456777777788999999999
Q ss_pred HHHHHHhh
Q 014061 394 QIKKDLAA 401 (431)
Q Consensus 394 ~l~~~i~~ 401 (431)
+|-++++-
T Consensus 384 slHDALcV 391 (527)
T KOG0363|consen 384 SLHDALCV 391 (527)
T ss_pred HHHHHHHH
Confidence 99999874
No 39
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=364.24 Aligned_cols=314 Identities=21% Similarity=0.293 Sum_probs=264.1
Q ss_pred ccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccccCC
Q 014061 55 FGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGD 133 (431)
Q Consensus 55 ~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~vGD 133 (431)
--+++...|+++|++++++++|+|||+||||||+| +|+.++|||.+||+++++++||+ ||||++++++|+++.||
T Consensus 23 ~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPa----akllv~a~~~q~~~iGD 98 (537)
T KOG0362|consen 23 GEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPA----AKLLVEATQMQEEEIGD 98 (537)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcH----HHHHHHHHHHHHHhhCC
Confidence 34788999999999999999999999999999999 99999999999999999999999 99999999999999999
Q ss_pred CcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCc----ccCChHHHHHHHhhc-----CCChHHH
Q 014061 134 GTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSF----PVTGRDDIKAVASIS-----AGNDEFI 204 (431)
Q Consensus 134 GTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~----~v~~~~~l~~va~ts-----~~~~~~l 204 (431)
||+++|+|+++||++|.++|..|++|.+|++||+.|.+.+++.|.++.. +++|.+ .+++++ ..+++++
T Consensus 99 gtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~---~~~rs~i~skq~~~ed~l 175 (537)
T KOG0362|consen 99 GTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKE---WALRSVIMSKQYGNEDFL 175 (537)
T ss_pred CceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChH---HHHHHHHHHhhcchHHHH
Confidence 9999999999999999999999999999999999999999999998753 334444 444443 3468999
Q ss_pred HHHHHHHHHhhhcCCc-----e--EEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccc-----
Q 014061 205 GNLIADAIIKIGADGV-----I--LIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQK----- 272 (431)
Q Consensus 205 ~~li~~Av~~vg~~g~-----I--~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~----- 272 (431)
.+++++|+..+.+.+. | -+..|+++++| .++.||+|++.-. +.+..-+.++|.++.|+
T Consensus 176 ~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~~S-~Vv~GmVfkr~~e---------G~v~~ak~arvAvf~cP~d~~~ 245 (537)
T KOG0362|consen 176 TKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDS-CVVCGMVFKRDPE---------GEVKSAKDARVAVFACPFDIAQ 245 (537)
T ss_pred HHHHHHHHHhhcccccccccceEEEEEecCCcccc-eeeEEEEeccccC---------CcccccccceeEEEecCCCccc
Confidence 9999999999988742 3 33689999999 9999999998633 23355677899999988
Q ss_pred --------cCCHHhHHH-----------HHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchh
Q 014061 273 --------ISTVKEIVP-----------LLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKA 333 (431)
Q Consensus 273 --------I~~~~~l~~-----------~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~ 333 (431)
|++++++++ .++.|...|++++++.+.+++.+|+++.. ++||++|+++ +.
T Consensus 246 TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnk------y~ImVlqi~S-----k~ 314 (537)
T KOG0362|consen 246 TETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNK------YKIMVLQINS-----KF 314 (537)
T ss_pred ccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhcc------ccEEEEEecc-----Hh
Confidence 677776543 56788889999999999999999987743 4689999988 89
Q ss_pred hHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEE---eCCe-------------EEEEeCCCCHHHHHHHHHHHHH
Q 014061 334 LLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTV---KSNS-------------TTIVADPYTKAEIQARIMQIKK 397 (431)
Q Consensus 334 ~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i---~~~~-------------~~ii~g~~~~~~i~~ri~~l~~ 397 (431)
||.|+|+..||++.+ ++..+.++.||+|++|.. +++. .|++-.+.....+++..+.+.+
T Consensus 315 eLrrlcrtvGA~~l~-----rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVdd 389 (537)
T KOG0362|consen 315 DLRRLCRTVGATALP-----RLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDD 389 (537)
T ss_pred hHHHHHHHcCCccch-----hccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHH
Confidence 999999999999999 688888899999999963 2222 2444444456666666666666
Q ss_pred HHhh
Q 014061 398 DLAA 401 (431)
Q Consensus 398 ~i~~ 401 (431)
.+..
T Consensus 390 gV~t 393 (537)
T KOG0362|consen 390 GVNT 393 (537)
T ss_pred hHHH
Confidence 6643
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-43 Score=350.83 Aligned_cols=327 Identities=23% Similarity=0.318 Sum_probs=289.6
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhccc
Q 014061 51 KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMND 129 (431)
Q Consensus 51 k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~ 129 (431)
.....|..++..|+.+.++++|.++++|||+.|.||+.+ .|.+..||||..|+++|++.||+ |+-+.+++..||+
T Consensus 12 ~~re~g~kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpa----aksmiel~rtqde 87 (527)
T KOG0364|consen 12 TKRESGRKVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPA----AKSMIELSRTQDE 87 (527)
T ss_pred cCcCccccccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcc----hhhHhhhhhcccc
Confidence 445668889999999999999999999999999999999 99999999999999999999999 9999999999999
Q ss_pred ccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccC--ChHHHHHHHhhcCC------Ch
Q 014061 130 LAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVT--GRDDIKAVASISAG------ND 201 (431)
Q Consensus 130 ~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~--~~~~l~~va~ts~~------~~ 201 (431)
++||||||+++||+++|.++..++++++||+.++++|.+|++.++..|+.+++|++ +...++.+..++.. |+
T Consensus 88 evgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~ 167 (527)
T KOG0364|consen 88 EVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWS 167 (527)
T ss_pred cccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999998887776 56678878776643 56
Q ss_pred HHHHHHHHHHHHhhhcC-Cc-e--------EEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecc
Q 014061 202 EFIGNLIADAIIKIGAD-GV-I--------LIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQ 271 (431)
Q Consensus 202 ~~l~~li~~Av~~vg~~-g~-I--------~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~ 271 (431)
+.++++..+|+++|+.+ |. | .+.+|+.+++| ++++|+.+.+...||. |...++||+|+++|+
T Consensus 168 ~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s-~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~ 239 (527)
T KOG0364|consen 168 DLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDS-CVLKGVMINKDVTHPK-------MRRAIENPRIVLLDC 239 (527)
T ss_pred chhhhHHHHHHHHhhhccCceechhhhccccccCccccccc-ceecceeeccccCcHH-------HHHHhhcCcEEEecC
Confidence 78899999999999875 43 2 33599999999 9999999999999984 778899999999999
Q ss_pred ccCC------------------------HHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCC
Q 014061 272 KIST------------------------VKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGF 327 (431)
Q Consensus 272 ~I~~------------------------~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~ 327 (431)
++.. .+++..+++.|....++||++.+++++.|++||.++++ .++
T Consensus 240 ~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~i-----------T~~ 308 (527)
T KOG0364|consen 240 PLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANI-----------TAI 308 (527)
T ss_pred CccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCc-----------hhh
Confidence 8631 13456778899999999999999999999999998875 356
Q ss_pred CCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCC-ceEEEEe---------------CCeEEEEeCCCCHHHHHHH
Q 014061 328 GDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGI-ARKVTVK---------------SNSTTIVADPYTKAEIQAR 391 (431)
Q Consensus 328 g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~-a~~V~i~---------------~~~~~ii~g~~~~~~i~~r 391 (431)
++.|+.|-.|||++|||++++ +.+|+.+.+.|+ |+.+++. ...|+++..+++++.+.+-
T Consensus 309 rr~rKtDn~ria~acga~iv~-----rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~pkaCtillrg~skdil~e~ 383 (527)
T KOG0364|consen 309 RRLRKTDNNRIARACGARIVN-----RPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKEPKACTILLRGPSKDILNEV 383 (527)
T ss_pred hhhhccccchhhhhcCceecc-----ChhhCchhccCcccceeeeeccCchhhhhhhhcCCCcceEEEeccCchhHHHHH
Confidence 799999999999999999999 799999999996 7788753 3468888888999999999
Q ss_pred HHHHHHHHhhcCCH
Q 014061 392 IMQIKKDLAATDNA 405 (431)
Q Consensus 392 i~~l~~~i~~~~~~ 405 (431)
.+.|++++.-+.+-
T Consensus 384 ernlqda~~varn~ 397 (527)
T KOG0364|consen 384 ERNLQDAMGVARNV 397 (527)
T ss_pred HHHhhhHHHHHHHh
Confidence 99999998765443
No 41
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-40 Score=325.65 Aligned_cols=301 Identities=22% Similarity=0.359 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhcccccCCCc
Q 014061 57 KESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGT 135 (431)
Q Consensus 57 ~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~~~~vGDGT 135 (431)
..+...|+++...+.+.+++.+||+|..||+++ .|++++|+||.+.+++|+++||- |-++..+|..||+..||||
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPT----a~lIakaatAqdd~tGDGt 91 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPT----ASLIAKVATAQDDITGDGT 91 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCch----HHHHHHHHHHhhcccCCCc
Confidence 446667888888999999999999999999999 99999999999999999999999 9999999999999999999
Q ss_pred chHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCC------hHHHHHHHH
Q 014061 136 TTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGN------DEFIGNLIA 209 (431)
Q Consensus 136 Tt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~------~~~l~~li~ 209 (431)
|++|+|.++|++++..+|..|+||..|.+||+.|.+.++++|+..+.+++ ++.|..+|++|++. -+.+.++++
T Consensus 92 tS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~-~~~L~~va~tsl~Tkv~~~la~~lt~~vv 170 (520)
T KOG0359|consen 92 TSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVD-RETLKDVARTSLRTKVHAELADVLTPIVV 170 (520)
T ss_pred ceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchh-HHHHHHHHHHhhcCcccHHHHhHhHHHHH
Confidence 99999999999999999999999999999999999999999997777764 78999999999875 367888999
Q ss_pred HHHHhhhc-CCceE-----E--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCH-----
Q 014061 210 DAIIKIGA-DGVIL-----I--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTV----- 276 (431)
Q Consensus 210 ~Av~~vg~-~g~I~-----i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~----- 276 (431)
+|+..+.+ ++.|. + -.-++..|+ .+++|+++|||-.||- ||..++|++||++|.+++..
T Consensus 171 ~aVl~i~~~~~~idl~mveim~mq~~s~~dT-~~v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYEK~Ein 242 (520)
T KOG0359|consen 171 DSVLCIRRQEEPIDLFMVEIMEMQHKSLHDT-SLVQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYEKPEIN 242 (520)
T ss_pred hhheeeccCCCCcchhHHHhhhhccCchhhh-HHhhhhhccCCCCCcc-------cccchhceEEEEeeccccccccccc
Confidence 99988863 33221 1 134566777 8999999999999995 89999999999999875322
Q ss_pred --------Hh-----------HHHHHHHHHhCCCC----EEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchh
Q 014061 277 --------KE-----------IVPLLEKTTQLSVP----LLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKA 333 (431)
Q Consensus 277 --------~~-----------l~~~le~i~~~g~~----lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~ 333 (431)
+| +.+.+.+|.+.++. +||.+++|||..|..|++++ |+| ++|.++.
T Consensus 243 sgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~g------Ila-----LRRAKRR 311 (520)
T KOG0359|consen 243 SGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSG------ILA-----LRRAKRR 311 (520)
T ss_pred cchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcc------hHH-----HHHHhhh
Confidence 11 22334555555432 55678999999999999875 344 4588899
Q ss_pred hHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEE---EeCCeEEEEeCCCCHH
Q 014061 334 LLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVT---VKSNSTTIVADPYTKA 386 (431)
Q Consensus 334 ~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~---i~~~~~~ii~g~~~~~ 386 (431)
.|||+..+|||..++ +++|++|+.||.|+.|+ ++++++||+++|.+|.
T Consensus 312 NmERL~lacGG~a~n-----svddLtp~~LG~aglVye~tlGEEkfTFIE~~~~p~ 362 (520)
T KOG0359|consen 312 NMERLVLACGGEAVN-----SVDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNNPS 362 (520)
T ss_pred hHHHHHHhhccceec-----ccccCChhhccccceeEEeeccceeeEeeecCCCCc
Confidence 999999999999999 79999999999999997 4688888888877665
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.5e-33 Score=269.44 Aligned_cols=246 Identities=22% Similarity=0.348 Sum_probs=216.1
Q ss_pred eccccchhhhHHHh-hcchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCc
Q 014061 34 LWRNQSRKMVAVVR-AGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDT 111 (431)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP 111 (431)
+.+.+.|||+. +| ...+...+|.++.++++-+.+++|.++++|+||+|++|+++. .|+..+|||| .|+
T Consensus 4 ~~~~~~~~~ii-LrDQd~~~Ri~G~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~ 73 (400)
T KOG0357|consen 4 AFDEFGRPFII-LRDQERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQ 73 (400)
T ss_pred HhHhhcCceEE-eeeccCCchhhHHHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chH
Confidence 45667777774 55 335788999999999999999999999999999999999999 9999999999 678
Q ss_pred hhhHHhHHHHHHHhhcccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHH
Q 014061 112 IENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIK 191 (431)
Q Consensus 112 ~en~gakll~e~a~~~~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~ 191 (431)
. ++++.+.+..|+.++|||||.+++|++++++++.+++..|+||..|.+||+.+...++++|.+.+.+++
T Consensus 74 I----akLmv~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e------ 143 (400)
T KOG0357|consen 74 I----AKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE------ 143 (400)
T ss_pred H----HHHHHHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc------
Confidence 7 999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeecc
Q 014061 192 AVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQ 271 (431)
Q Consensus 192 ~va~ts~~~~~~l~~li~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~ 271 (431)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCHHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCC
Q 014061 272 KISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGEL 351 (431)
Q Consensus 272 ~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~ 351 (431)
+..++++++++|++++||+|++||+|.++|..|++ -||||.| --++|-||++|||++++
T Consensus 144 -------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~l------pavrwVG-----GpEiEliAiaT~grIVp--- 202 (400)
T KOG0357|consen 144 -------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNL------PAVRWVG-----GPEIELIAIATGGRIVP--- 202 (400)
T ss_pred -------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCC------CceeecC-----CcceEEEEeecCCeeec---
Confidence 56678889999999999999999999999999975 4555544 77899999999999999
Q ss_pred CccccCCCCCCCCCceEEEE-----eCCeEEEEe------------CCCCHHHHHHHHHHHHHHHhhc
Q 014061 352 GLTLAGATSDQLGIARKVTV-----KSNSTTIVA------------DPYTKAEIQARIMQIKKDLAAT 402 (431)
Q Consensus 352 ~~~l~~~~~~~LG~a~~V~i-----~~~~~~ii~------------g~~~~~~i~~ri~~l~~~i~~~ 402 (431)
++++++++.||+|+.|+. ++|++.+++ .++|+-.|++-.+.|.++|+..
T Consensus 203 --rF~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvi 268 (400)
T KOG0357|consen 203 --RFSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVI 268 (400)
T ss_pred --cHhhhCHhhccccceEEEEecccccceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHH
Confidence 799999999999999974 244444433 3456668899999999999864
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.90 E-value=1.6e-22 Score=190.75 Aligned_cols=174 Identities=32% Similarity=0.433 Sum_probs=148.8
Q ss_pred HHHHHHHhhcCC-----ChHHHHHHHHHHHHhhhc------CCceEE--ecCCCceeeeEeeeceEEeccCCCCcccccc
Q 014061 188 DDIKAVASISAG-----NDEFIGNLIADAIIKIGA------DGVILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQ 254 (431)
Q Consensus 188 ~~l~~va~ts~~-----~~~~l~~li~~Av~~vg~------~g~I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~ 254 (431)
+.|.++|+||++ +++.+++++++|+..+++ .+.|.+ .+|+++.|| ++++|++|+++|.+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~ds-~li~Gv~~~~~~~~~~----- 75 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDS-ELVVGVVFDKGYASPY----- 75 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChhhc-eeEeeEEEeccccCCC-----
Confidence 468999999998 899999999999999987 345554 589999999 9999999999999997
Q ss_pred ccCeeEeeCceeEeeccccCCHHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhh
Q 014061 255 EKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKAL 334 (431)
Q Consensus 255 ~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~ 334 (431)
|+.+++||+|++++++|+. +|+++++|++.|+++|..++ |+||++ +++++
T Consensus 76 --m~~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~~------I~~v~~-----~~~~~ 125 (209)
T cd03333 76 --MPKRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKAG------IMAVRR-----VKKED 125 (209)
T ss_pred --CCeEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHCC------CEEEEe-----CCHHH
Confidence 6889999999999999987 88888999999999999864 678774 66999
Q ss_pred HHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEeC---C------------eEEEEeCCCCHHHHHHHHHHHHHHH
Q 014061 335 LQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKS---N------------STTIVADPYTKAEIQARIMQIKKDL 399 (431)
Q Consensus 335 LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~~---~------------~~~ii~g~~~~~~i~~ri~~l~~~i 399 (431)
|+|||++|||++++ ++++++++.||+|++|++.+ + .+|++-++++...+++..+.+++.+
T Consensus 126 l~~ia~~tga~ii~-----~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~~~~tIllrG~t~~~l~e~kr~l~dal 200 (209)
T cd03333 126 LERIARATGATIVS-----SLEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGGKAATILLRGATEVELDEVKRSLHDAL 200 (209)
T ss_pred HHHHHHHHCCEEec-----ccccCChhhceeeeEEEEEEECCeEEEEEEcCCCCCEEEEEEECCCHhHHHHHHHHHHHHH
Confidence 99999999999999 68888999999999998642 2 2344444557888999999999988
Q ss_pred hhc
Q 014061 400 AAT 402 (431)
Q Consensus 400 ~~~ 402 (431)
...
T Consensus 201 ~~~ 203 (209)
T cd03333 201 CAV 203 (209)
T ss_pred HHH
Confidence 754
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.85 E-value=3.4e-20 Score=180.96 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=145.6
Q ss_pred ChHHHHHHHHHHHHhhhcC---C-------ceEE--ecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeE
Q 014061 200 NDEFIGNLIADAIIKIGAD---G-------VILI--ESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVL 267 (431)
Q Consensus 200 ~~~~l~~li~~Av~~vg~~---g-------~I~i--~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIl 267 (431)
+.+.|++++++|+..+.++ + .|++ ..|++++|| ++++|++|+++..++ +||.+++||+|+
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS-~li~Gvvi~k~~~~~-------~m~~~i~n~kIl 90 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDS-EVVDGVVFTKNVAHK-------RMPSKIKNPRIL 90 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHc-EEEeeEEEeCCCCCc-------cCCcccCCCcEE
Confidence 5689999999999988532 1 2444 589999999 999999999998876 488999999999
Q ss_pred eeccccCCH------H-----------hHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCC
Q 014061 268 ITDQKISTV------K-----------EIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDG 330 (431)
Q Consensus 268 l~d~~I~~~------~-----------~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~ 330 (431)
+++++|+.. . .+...+++|++.|++||+++++|++.|+++|.+++ |++|+ ++
T Consensus 91 ll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~g------I~~v~-----~v 159 (261)
T cd03334 91 LLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAG------ITLVL-----NV 159 (261)
T ss_pred EEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCC------CEEEE-----ec
Confidence 999987432 1 24567899999999999999999999999999875 46666 56
Q ss_pred chhhHHHHHHHhCCeEeecCCCccc-cCCCCCCCCCceEEEEeC--------CeEEEEe------------CCCCHHHHH
Q 014061 331 KKALLQDIALMTGADFLSGELGLTL-AGATSDQLGIARKVTVKS--------NSTTIVA------------DPYTKAEIQ 389 (431)
Q Consensus 331 r~~~LedIa~~TGa~ii~~~~~~~l-~~~~~~~LG~a~~V~i~~--------~~~~ii~------------g~~~~~~i~ 389 (431)
++++|+|||++|||++++ ++ ++++++.||+|+.|++.+ ++++++. ++++...++
T Consensus 160 ~~~dl~rIa~~tGa~ii~-----~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~~~~TIlLRG~t~~~ld 234 (261)
T cd03334 160 KPSVLERISRCTGADIIS-----SMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKELGCTILLRGGDLEELK 234 (261)
T ss_pred CHHHHHHHHHHhCCEEec-----ChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCCceeEEEEECCCHHHHH
Confidence 699999999999999999 53 478889999999997532 2444444 445677899
Q ss_pred HHHHHHHHHHhhc
Q 014061 390 ARIMQIKKDLAAT 402 (431)
Q Consensus 390 ~ri~~l~~~i~~~ 402 (431)
+..+.+.+.+...
T Consensus 235 e~eR~i~Dal~v~ 247 (261)
T cd03334 235 KVKRVVEFMVFAA 247 (261)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.90 E-value=3.8e-09 Score=119.46 Aligned_cols=148 Identities=22% Similarity=0.304 Sum_probs=118.9
Q ss_pred ChHHHHHHHHHHHHhhhcC----------Cc--eEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeE
Q 014061 200 NDEFIGNLIADAIIKIGAD----------GV--ILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVL 267 (431)
Q Consensus 200 ~~~~l~~li~~Av~~vg~~----------g~--I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIl 267 (431)
|.+-+..++.+|...+.++ +. |+...||+..|| +++.|++|.+...+. .|..++++|+|+
T Consensus 333 W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS-~vi~Gvv~sKn~~~k-------~M~~~~e~pril 404 (1598)
T KOG0230|consen 333 WLDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDS-EVIKGVVCSKNVAHK-------RMATKYENPRIL 404 (1598)
T ss_pred HHHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccc-eeeeEEEeecchhhh-------hhhhhccCCceE
Confidence 4567778888888877664 12 444688899998 999999999977664 488899999999
Q ss_pred eecccc---------CCHH--------hHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCC
Q 014061 268 ITDQKI---------STVK--------EIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDG 330 (431)
Q Consensus 268 l~d~~I---------~~~~--------~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~ 330 (431)
++.++| .+.+ .+...+.+|....++++++.++|++.|+++|... |+.-++ ++
T Consensus 405 ll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k---~I~lvl--------nv 473 (1598)
T KOG0230|consen 405 LLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDK---GISLVL--------NV 473 (1598)
T ss_pred EEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhcc---CeEEEE--------ec
Confidence 998864 2332 2345677888889999999999999999998764 444444 45
Q ss_pred chhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEE
Q 014061 331 KKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTV 371 (431)
Q Consensus 331 r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i 371 (431)
++..|+||+++|||.|++ +++.++...||+|+.+++
T Consensus 474 K~s~leRIsR~tga~I~~-----siDslt~~klg~C~~F~v 509 (1598)
T KOG0230|consen 474 KRSLLERISRCTGADIVP-----SVDSLTSQKLGYCELFRV 509 (1598)
T ss_pred cHHHHHHHHHHhcCceec-----chhhhhccccCCCccHhh
Confidence 689999999999999998 688899999999999985
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.8e-06 Score=88.38 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCC-EEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhH-HHHHHHhCCeEeecCCCcccc
Q 014061 279 IVPLLEKTTQLSVP-LLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALL-QDIALMTGADFLSGELGLTLA 356 (431)
Q Consensus 279 l~~~le~i~~~g~~-lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~L-edIa~~TGa~ii~~~~~~~l~ 356 (431)
+..+++++.+.|.+ +++++++|+|.++++|..+. |+++ |++.++++ ++|+.+|||+.++ .++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~------Ilt~-----~~v~~~dl~~~l~~~~ga~~v~-----~~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIA------ILTG-----RRVKKEDLGERLAKLGGAKIVS-----VLK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhc------ceec-----ceecchhhHHHHHHccCceEEe-----ecc
Confidence 34567788899999 88999999999999999875 4544 56678999 7999999999999 689
Q ss_pred CCCCCCCCC--ceEEEEe-----------------CCeEEEEeCCCCHHHHHHHHHHHHHHHhhc
Q 014061 357 GATSDQLGI--ARKVTVK-----------------SNSTTIVADPYTKAEIQARIMQIKKDLAAT 402 (431)
Q Consensus 357 ~~~~~~LG~--a~~V~i~-----------------~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~ 402 (431)
+.++..+|. |+.|+.. ...++|+-++++...++++.+.+.++|...
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~ 387 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVV 387 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHH
Confidence 999999999 9999853 125777777888999999999999999875
No 47
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=92.69 E-value=0.0037 Score=67.24 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=78.5
Q ss_pred hCCCCEEEEecCCch-----HHHHHHHHcccccce----eeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCC
Q 014061 288 QLSVPLLIIAEDISS-----QVLETLVMNKIRGLL----NVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGA 358 (431)
Q Consensus 288 ~~g~~lvIi~~~I~~-----~aL~~L~~n~l~G~~----~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~ 358 (431)
+...++.|..+++++ +++..+..++++++. ++++++.| +++...+.|++..++|+.++...+++.-..-.
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~t 323 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDEDLKRVVKAC 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 334578888999988 888888888888755 89999988 99999999999999999887775322100000
Q ss_pred CCCCCCCceEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCC----eEEEEeCcc
Q 014061 359 TSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGG----VAVIKVCYM 430 (431)
Q Consensus 359 ~~~~LG~a~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~----~a~i~vGg~ 430 (431)
....+.+.+.+. .+ .++.|+ .-++++++++|+.+|+|+ +++|.++|+
T Consensus 324 ga~ii~~~~~l~--~~---~LG~~~--------------------~ie~~~~~~~r~~~~~g~~~~~~~TI~lrG~ 374 (522)
T TIGR02345 324 GGSIQSTTSDLE--AD---VLGTCA--------------------LFEERQIGSERYNYFTGCPHAKTCTIILRGG 374 (522)
T ss_pred CCeEEcchhhCC--hh---hccCCc--------------------eEEEEEECCeEEEEEEcCCCCceEEEEEECC
Confidence 111111111111 11 122221 113566778999999999 999999986
No 48
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=68.02 E-value=24 Score=31.01 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=43.4
Q ss_pred eEEEEeCCeEEEEeC------CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCC
Q 014061 367 RKVTVKSNSTTIVAD------PYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGG 421 (431)
Q Consensus 367 ~~V~i~~~~~~ii~g------~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~ 421 (431)
+.+++++++++++-. .=|.+..++..+..+.+++.+.++..|++++.|+++|+..
T Consensus 67 Gf~eV~~n~v~Ila~~ae~~eeID~~~a~~a~~~Ae~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (133)
T PRK14736 67 GFAEIGPTSVTVLAERAAPVEELTPEMIDREIEAVEMERDATQDLDKREALNAQIVQMQEA 127 (133)
T ss_pred eEEEEECCEEEEEeeeeEEhhhCCHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 445567777777644 2356788888888999999899999999999999998754
No 49
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=38.11 E-value=1.6e+02 Score=25.43 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhc
Q 014061 383 YTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLS 419 (431)
Q Consensus 383 ~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~ 419 (431)
-+.+..++..+..+.++.++.++.++.+.+.+|.|..
T Consensus 87 id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~ 123 (130)
T TIGR01216 87 IDEAEAEKALEAAEKLLESAEDDKDLAEALLKLKKAR 123 (130)
T ss_pred CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Confidence 3678899999999999998888899888887776643
No 50
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.52 E-value=37 Score=34.14 Aligned_cols=44 Identities=20% Similarity=0.629 Sum_probs=37.0
Q ss_pred eeCceeEeeccccCCH-----HhHHHHHHHHHh-CCCCEEEEecCCchHH
Q 014061 261 FDNAKVLITDQKISTV-----KEIVPLLEKTTQ-LSVPLLIIAEDISSQV 304 (431)
Q Consensus 261 l~npkIll~d~~I~~~-----~~l~~~le~i~~-~g~~lvIi~~~I~~~a 304 (431)
+..|.+|+.|.++.+. .+++|++|.+.+ .+.|+|-+..++++-+
T Consensus 144 Lt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~ 193 (352)
T COG4148 144 LTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193 (352)
T ss_pred hcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHH
Confidence 6789999999998765 479999999875 4789999999998744
No 51
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=33.22 E-value=43 Score=30.45 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=31.3
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCc
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDIS 301 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~ 301 (431)
+.+|+++++|.+.+. .+.+..+++.+.+.|..++++..+.+
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 143 AMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 468999999988543 35677788877777888888887754
No 52
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.18 E-value=79 Score=26.60 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeE
Q 014061 388 IQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVA 423 (431)
Q Consensus 388 i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a 423 (431)
.+.|+..++..++.-.+..|-.+|+-+++++.|.+.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 488999999999999999999999999999999764
No 53
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=30.51 E-value=5.5e+02 Score=25.49 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=18.7
Q ss_pred CCHHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHH
Q 014061 274 STVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLV 309 (431)
Q Consensus 274 ~~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~ 309 (431)
.....+++.+..+.. +..++|+..+-+.+-+..++
T Consensus 195 k~~~~l~~a~~~~~~-~~~l~ivG~g~~~~~l~~~~ 229 (359)
T PRK09922 195 KNVKELFDGLSQTTG-EWQLHIIGDGSDFEKCKAYS 229 (359)
T ss_pred cCHHHHHHHHHhhCC-CeEEEEEeCCccHHHHHHHH
Confidence 334445555544422 45677777666555555554
No 54
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=30.18 E-value=56 Score=32.08 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=35.7
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
..+|.++++|.|... ..++..+++.+.+.|+-++++..|++.
T Consensus 155 ~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~ 201 (254)
T COG1121 155 AQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL 201 (254)
T ss_pred ccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence 568999999998654 457889999999989999999999875
No 55
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.10 E-value=75 Score=29.07 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=32.7
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCchHH
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISSQV 304 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~~a 304 (431)
+.+|+++++|.+.+. .+.+...++.+.+.|..++++..+.+.++
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~ 172 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI 172 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHH
Confidence 468999999988543 34677778777766888899988876433
No 56
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=28.27 E-value=1.8e+02 Score=25.13 Aligned_cols=64 Identities=19% Similarity=0.470 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhC------CCCEEEEecCCc----hHHHHHHHHcccccceeeeeecCCCCCC-CchhhHHHHHHHhCCeE
Q 014061 278 EIVPLLEKTTQL------SVPLLIIAEDIS----SQVLETLVMNKIRGLLNVAVVKCPGFGD-GKKALLQDIALMTGADF 346 (431)
Q Consensus 278 ~l~~~le~i~~~------g~~lvIi~~~I~----~~aL~~L~~n~l~G~~~v~aVk~~~~g~-~r~~~LedIa~~TGa~i 346 (431)
++.+.|+.+.+. -..++++..+.. ++.++..... .+.+.|.++ ++|. .....|+.||..+||..
T Consensus 79 ~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~~~--~~~~~i~~~---~~g~~~~~~~L~~LA~~~~G~~ 153 (155)
T PF13768_consen 79 DLLAALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVRRA--RGHIRIFTF---GIGSDADADFLRELARATGGSF 153 (155)
T ss_pred cHHHHHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHHhc--CCCceEEEE---EECChhHHHHHHHHHHcCCCEE
Confidence 455555555443 224666665552 2344444332 245666665 5566 56789999999999975
No 57
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=28.00 E-value=3.5e+02 Score=25.34 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=41.6
Q ss_pred eeCceeEeeccccCCHHhHHHHHHHHHhCCC---CEEEEecCCchHHHHHHHHccc
Q 014061 261 FDNAKVLITDQKISTVKEIVPLLEKTTQLSV---PLLIIAEDISSQVLETLVMNKI 313 (431)
Q Consensus 261 l~npkIll~d~~I~~~~~l~~~le~i~~~g~---~lvIi~~~I~~~aL~~L~~n~l 313 (431)
+++..++++|--+.+-..+..+++.+.+.|+ ++++++==.+++.++.+..+.-
T Consensus 119 i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~~~~P 174 (207)
T PF14681_consen 119 IENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASPEGLERLLKAFP 174 (207)
T ss_dssp GTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHHHHST
T ss_pred ccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecHHHHHHHHHhCC
Confidence 4567899999989999999999999999886 4666666667778887776543
No 58
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=27.16 E-value=3.2e+02 Score=23.77 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=34.3
Q ss_pred eEEEEeCCeEEEEeC------CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 014061 367 RKVTVKSNSTTIVAD------PYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAK 417 (431)
Q Consensus 367 ~~V~i~~~~~~ii~g------~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~ 417 (431)
+-+++.++.++|+-. .-|.+..+++.+..++++....++.++.+.+.+|.|
T Consensus 67 G~~~v~~n~v~Ila~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~ 123 (135)
T PRK00571 67 GFLEVQPDKVTVLADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAALAR 123 (135)
T ss_pred EEEEEECCEEEEEEeeEEEhhhCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 334456666666533 236678888999999999887777777665554443
No 59
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=26.96 E-value=3.4e+02 Score=23.74 Aligned_cols=50 Identities=14% Similarity=0.292 Sum_probs=34.8
Q ss_pred eEEEEeCCeEEEEeCCC------CHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 014061 367 RKVTVKSNSTTIVADPY------TKAEIQARIMQIKKDLAATDNAYLSRKLSERIA 416 (431)
Q Consensus 367 ~~V~i~~~~~~ii~g~~------~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla 416 (431)
+.+++++++++|+-..- |.+..++..+..+++|+...++.++.+.+..|.
T Consensus 67 Gf~ev~~n~v~Ilad~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ 122 (133)
T PRK00539 67 GLLLIKKTEAKIFTENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLM 122 (133)
T ss_pred eEEEEECCEEEEEECeEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHH
Confidence 55667888888885532 456788888889999987766666665554443
No 60
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=26.88 E-value=3.5e+02 Score=23.58 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=34.0
Q ss_pred EEEEeCCeEEEEeC------CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 014061 368 KVTVKSNSTTIVAD------PYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAK 417 (431)
Q Consensus 368 ~V~i~~~~~~ii~g------~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~ 417 (431)
.+++++++++++-. .-|.+..++..+..++++....++.++.+.+.+|.|
T Consensus 66 ~~~v~~~~v~Il~~~a~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~r 121 (134)
T CHL00063 66 FARIGNNEITILVNDAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLALKR 121 (134)
T ss_pred EEEEECCEEEEEECeeEchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 34456777766643 225667888888889999887777777666655544
No 61
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=26.71 E-value=86 Score=28.76 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=32.8
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCchHHH
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISSQVL 305 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~~aL 305 (431)
+.+|.++++|.+.+. .+.+..+++.+.+.+..++++..+.+.++.
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHH
Confidence 468899999988543 346777787777668888888888764443
No 62
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=25.53 E-value=61 Score=28.90 Aligned_cols=43 Identities=19% Similarity=0.381 Sum_probs=31.1
Q ss_pred EeeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 260 EFDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 260 ~l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
-+.+|+++++|.+.+. .+.+...+..+.+.+..++++..+.+.
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3578999999988543 346777777776667778888877553
No 63
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=25.06 E-value=2.3e+02 Score=24.60 Aligned_cols=19 Identities=16% Similarity=-0.073 Sum_probs=15.8
Q ss_pred CchhhHHHHHHHhCCeEee
Q 014061 330 GKKALLQDIALMTGADFLS 348 (431)
Q Consensus 330 ~r~~~LedIa~~TGa~ii~ 348 (431)
.....|++||..|||..+.
T Consensus 140 ~~~~~l~~ia~~~gG~~~~ 158 (171)
T cd01461 140 VNTYLLERLAREGRGIARR 158 (171)
T ss_pred cCHHHHHHHHHcCCCeEEE
Confidence 3467899999999999876
No 64
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=24.37 E-value=3e+02 Score=22.27 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCCEEEEecCCchHHHHHHH
Q 014061 281 PLLEKTTQLSVPLLIIAEDISSQVLETLV 309 (431)
Q Consensus 281 ~~le~i~~~g~~lvIi~~~I~~~aL~~L~ 309 (431)
+.++.+.+..+.+|++++|+++...+-|.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~ 48 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVL 48 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHH
Confidence 45566666677899999999988766443
No 65
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=24.22 E-value=1e+02 Score=28.77 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=33.6
Q ss_pred eeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecCCchHHHH
Q 014061 261 FDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAEDISSQVLE 306 (431)
Q Consensus 261 l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~ 306 (431)
+.+|+++++|.+.+ +.+++..++..+.+.+..++++..+..+++..
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 46899999998843 34567777877766688888888887544443
No 66
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=24.19 E-value=1.9e+02 Score=24.55 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=31.5
Q ss_pred EeeccccCCHHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHH
Q 014061 267 LITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVM 310 (431)
Q Consensus 267 ll~d~~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~ 310 (431)
.+.|+. +++.....++.+.+.|+|+|+..-+.+++-++.|..
T Consensus 70 VvIDfT--~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFT--NPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp EEEEES---HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred EEEEcC--ChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 345664 788888899999999999999999999877776654
No 67
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.12 E-value=99 Score=29.77 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=59.5
Q ss_pred cCCCCccccccccCeeEeeC--c-eeEeeccccCCHHhHHHHHHHHHhCCCCEEE-EecCCchHHHHHHHHcccccceee
Q 014061 244 GYLSPQFITNQEKSLVEFDN--A-KVLITDQKISTVKEIVPLLEKTTQLSVPLLI-IAEDISSQVLETLVMNKIRGLLNV 319 (431)
Q Consensus 244 g~~sp~f~~~~~~~~~~l~n--p-kIll~d~~I~~~~~l~~~le~i~~~g~~lvI-i~~~I~~~aL~~L~~n~l~G~~~v 319 (431)
.|.+| |..+++..-..+.+ + .|++.|-+++..+++..+++.+.+.|...++ +...-+.+.+..+... ..|.+ +
T Consensus 81 ~y~n~-~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~-~~~~l-~ 157 (244)
T PRK13125 81 TYLED-YVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL-SPLFI-Y 157 (244)
T ss_pred Eecch-hhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh-CCCEE-E
Confidence 46666 44444432222222 2 3555565566667888889999999986554 4555556666655543 33433 3
Q ss_pred eeecCCCCCCC-c---hhhHHHHHHHhCCeEeecCCCc-cccCC
Q 014061 320 AVVKCPGFGDG-K---KALLQDIALMTGADFLSGELGL-TLAGA 358 (431)
Q Consensus 320 ~aVk~~~~g~~-r---~~~LedIa~~TGa~ii~~~~~~-~l~~~ 358 (431)
+.|. |++|.. . .+-++++...+....+.-+.|+ +.+++
T Consensus 158 msv~-~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i 200 (244)
T PRK13125 158 YGLR-PATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDA 200 (244)
T ss_pred EEeC-CCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHH
Confidence 4554 666642 1 1234455555543334445666 44444
No 68
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.97 E-value=81 Score=29.06 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=31.2
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|.++++|.+.+. .+.+..+++.+.+.+..++++..+.+.
T Consensus 145 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 191 (204)
T PRK13538 145 LTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP 191 (204)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh
Confidence 568999999988543 346777777776667788888877554
No 69
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=23.91 E-value=81 Score=29.17 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=32.2
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+.+. .+++..+++.+.+.|..++++..+.+.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 468999999988543 356778888777778889998888654
No 70
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.90 E-value=72 Score=29.48 Aligned_cols=42 Identities=17% Similarity=0.400 Sum_probs=31.6
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+.+. .+.+...++.+.+.|..++++..+.+.
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 199 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL 199 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 568999999988543 346777887777678888888887653
No 71
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=23.76 E-value=70 Score=29.67 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=31.6
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+.+. .+.+...+..+.+.|..++++..+.+.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 568999999998543 346777787776667788888887653
No 72
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=23.52 E-value=3.6e+02 Score=26.33 Aligned_cols=81 Identities=14% Similarity=0.290 Sum_probs=51.0
Q ss_pred CHHhHHHHHHHHHhCCCCEEEEecC-CchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecC--C
Q 014061 275 TVKEIVPLLEKTTQLSVPLLIIAED-ISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGE--L 351 (431)
Q Consensus 275 ~~~~l~~~le~i~~~g~~lvIi~~~-I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~--~ 351 (431)
+++-+...+.++.+.|++++++.-+ ..|+-| ++.++.+|+.+|+++.-.. .
T Consensus 69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l--------------------------~erl~~lak~~~~rv~~pSGAi 122 (255)
T COG1712 69 SPEAVREYVPKILKAGIDVIVMSVGALADEGL--------------------------RERLRELAKCGGARVYLPSGAI 122 (255)
T ss_pred CHHHHHHHhHHHHhcCCCEEEEechhccChHH--------------------------HHHHHHHHhcCCcEEEecCccc
Confidence 3444556667777888888876532 222111 3556778999999876521 1
Q ss_pred CccccCCCCCCCCCceEEEEe-------------CCeEEEEeCC
Q 014061 352 GLTLAGATSDQLGIARKVTVK-------------SNSTTIVADP 382 (431)
Q Consensus 352 ~~~l~~~~~~~LG~a~~V~i~-------------~~~~~ii~g~ 382 (431)
| -+|-+..-.+|..+.|..+ +++|++++|.
T Consensus 123 G-GlD~l~aar~g~i~~V~lttrKpp~~lg~dl~~~ktVlfeG~ 165 (255)
T COG1712 123 G-GLDALAAARVGGIEEVVLTTRKPPAELGIDLEDKKTVLFEGS 165 (255)
T ss_pred h-hHHHHHHhhcCCeeEEEEEeecChHHhCcCcccCceEEEecc
Confidence 1 1455666678888888753 3677788774
No 73
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=23.05 E-value=76 Score=29.71 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=31.8
Q ss_pred eeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+.+ +.+++..+++.+.+.+..++++..+.+.
T Consensus 149 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 195 (232)
T cd03218 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRE 195 (232)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46899999998854 3456778888777778888888887653
No 74
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=23.04 E-value=76 Score=29.78 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=32.4
Q ss_pred EeeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 260 EFDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 260 ~l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
-+.+|+++++|.+.+ +.+.+..+++.+.+.|..++++..+.+.
T Consensus 128 l~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175 (223)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 357999999999854 3456778888777678788888887653
No 75
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.95 E-value=81 Score=29.34 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=31.8
Q ss_pred EeeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 260 EFDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 260 ~l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
-+.+|.++++|.+.+. .+.+..+++.+.+.|..++++..+.+.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 3568999999988543 345677787777778888888877654
No 76
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=22.75 E-value=2.6e+02 Score=20.02 Aligned_cols=38 Identities=11% Similarity=0.013 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcC
Q 014061 383 YTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSG 420 (431)
Q Consensus 383 ~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g 420 (431)
.+++.-.+-++.+...|....++.+|+-+-+++|+..|
T Consensus 16 ~~~egk~~~~~~~~~~i~~i~~~i~r~~y~~~la~~~~ 53 (59)
T PF10410_consen 16 DTPEGKAEAVREAAPLIAQIPDPIERELYIRELAERLG 53 (59)
T ss_dssp TSHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 35556666677788888889999999999999999877
No 77
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=22.71 E-value=75 Score=29.36 Aligned_cols=42 Identities=17% Similarity=0.411 Sum_probs=31.3
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+-+. .+.+..++..+.+.|..++++..+.+.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 468999999988543 346777787777667788888887654
No 78
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=22.30 E-value=75 Score=29.26 Aligned_cols=42 Identities=17% Similarity=0.383 Sum_probs=30.9
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+... .+.+..++..+.+.|..++++..+.+.
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 468999999988543 345677888777777788888877543
No 79
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=22.29 E-value=4.4e+02 Score=23.02 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=33.3
Q ss_pred EEEEeCCeEEEEeC------CCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 014061 368 KVTVKSNSTTIVAD------PYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAK 417 (431)
Q Consensus 368 ~V~i~~~~~~ii~g------~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~ 417 (431)
-++++++..+++-. .-|.+..++.++..+++++...++.++.+.+.+|.|
T Consensus 68 ~~~v~~~~v~Il~~~a~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~ 123 (136)
T PRK13446 68 FAEVSNNKVTVLAETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALER 123 (136)
T ss_pred EEEEECCEEEEEeeeEEEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 34456666655532 236678888888899999887777776666555443
No 80
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=22.18 E-value=76 Score=29.79 Aligned_cols=42 Identities=17% Similarity=0.411 Sum_probs=32.1
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|.++++|.+.+. .+.+..++..+.+.|..+|++..+.+.
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 468999999988543 356778888877678888998888664
No 81
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=22.13 E-value=79 Score=29.79 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=31.9
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+.+. .+.+..++..+.+.|..++++..+.+.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~ 206 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence 468999999998543 356778888877777788888887653
No 82
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.53 E-value=81 Score=29.04 Aligned_cols=41 Identities=20% Similarity=0.396 Sum_probs=31.1
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCc
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDIS 301 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~ 301 (431)
+.+|+++++|.+.+. .+.+..++....+.|..++++..+.+
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 150 AMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 568999999988543 35677778777766888888888755
No 83
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.44 E-value=75 Score=29.22 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=31.7
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|.++++|.+.+. .+.+...+..+.+.|..++++..+.+.
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 468999999998543 356777887776678888888887654
No 84
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=21.35 E-value=88 Score=28.01 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=29.6
Q ss_pred eeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecCCc
Q 014061 261 FDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAEDIS 301 (431)
Q Consensus 261 l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~I~ 301 (431)
+.+|+++++|.+.. +.+++...+..+.+.|..++++..+.+
T Consensus 112 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 112 YGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred hcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56889999998743 334567777777666777888887764
No 85
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=21.14 E-value=86 Score=28.86 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=31.0
Q ss_pred eeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|.++++|.+-+ +.+.+...+..+.+.|..++++..+.+.
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 188 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSE 188 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 46899999998843 3456777888777777788888877553
No 86
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=20.98 E-value=85 Score=29.73 Aligned_cols=42 Identities=12% Similarity=0.082 Sum_probs=31.4
Q ss_pred EeeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCc
Q 014061 260 EFDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDIS 301 (431)
Q Consensus 260 ~l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~ 301 (431)
-+.+|.|+++|.+.+. .+.+..+++.+.+.+..++++..+.+
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3578999999998543 34567777777777778888888755
No 87
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.83 E-value=1e+02 Score=27.84 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=28.0
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCc
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDIS 301 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~ 301 (431)
+.+|.++++|.+... .+.+...+..+.+.+..++++..+.+
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468889999887432 34566777776666767777776653
No 88
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=20.73 E-value=86 Score=29.24 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=31.2
Q ss_pred eeCceeEeeccccCC-----HHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIST-----VKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~~-----~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+.+. .+.+...+..+.+.|..++++..+.+.
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE 186 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 568999999988543 356777787776667788888887553
No 89
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=20.70 E-value=2.6e+02 Score=25.27 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=18.3
Q ss_pred CCCCC--chhhHHHHHHHhCCeEee
Q 014061 326 GFGDG--KKALLQDIALMTGADFLS 348 (431)
Q Consensus 326 ~~g~~--r~~~LedIa~~TGa~ii~ 348 (431)
++|.- ....|+.||..+||+...
T Consensus 161 giG~~~~d~~~L~~lA~~~~G~~~~ 185 (190)
T cd01463 161 LIGREVTDRREIQWMACENKGYYSH 185 (190)
T ss_pred ecCCccccchHHHHHHhhcCCeEEE
Confidence 55653 478999999999998775
No 90
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=20.33 E-value=87 Score=29.75 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=31.5
Q ss_pred eeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|+++++|.+.+ +.+.+..+++.+.+.|..++++..+.+.
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 46899999998854 3356777888777778788888877653
No 91
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=20.26 E-value=84 Score=30.12 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=32.0
Q ss_pred eeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecCCch
Q 014061 261 FDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAEDISS 302 (431)
Q Consensus 261 l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~I~~ 302 (431)
+.+|.++++|.+.. +.+.+...+..+.+.|..++++..+.+.
T Consensus 168 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~ 214 (257)
T PRK10619 168 AMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 214 (257)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56899999999854 3356777788777778889998887553
No 92
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=20.11 E-value=1e+02 Score=28.64 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=30.1
Q ss_pred eeCceeEeeccccC-----CHHhHHHHHHHHHhCCCCEEEEecC
Q 014061 261 FDNAKVLITDQKIS-----TVKEIVPLLEKTTQLSVPLLIIAED 299 (431)
Q Consensus 261 l~npkIll~d~~I~-----~~~~l~~~le~i~~~g~~lvIi~~~ 299 (431)
+.+|+++++|.+.+ +.+.+..++..+.+.|..++++..+
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 165 IADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56899999998854 3456778888877778888888877
Done!