Query 014064
Match_columns 431
No_of_seqs 149 out of 1665
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 01:30:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.6 6.6E-17 1.4E-21 149.0 -1.0 341 26-408 74-445 (483)
2 KOG2120 SCF ubiquitin ligase, 99.5 3.1E-15 6.6E-20 132.4 3.1 274 24-339 98-394 (419)
3 smart00579 FBD domain in FBox 99.2 8.3E-11 1.8E-15 85.2 6.8 69 357-426 1-71 (72)
4 PF08387 FBD: FBD; InterPro: 98.8 2.9E-09 6.3E-14 70.9 3.6 43 356-398 9-51 (51)
5 PF12937 F-box-like: F-box-lik 98.7 8.8E-09 1.9E-13 67.6 2.8 35 24-58 1-35 (47)
6 KOG4341 F-box protein containi 98.3 1.1E-08 2.4E-13 95.3 -6.7 235 128-404 139-387 (483)
7 PF00646 F-box: F-box domain; 98.3 1.8E-07 3.9E-12 61.7 0.3 38 24-61 3-40 (48)
8 smart00256 FBOX A Receptor for 98.2 1.5E-06 3.2E-11 55.1 3.8 33 27-59 1-33 (41)
9 PLN03210 Resistant to P. syrin 98.2 4.7E-06 1E-10 92.4 8.9 84 160-244 652-735 (1153)
10 PLN00113 leucine-rich repeat r 98.0 7.9E-06 1.7E-10 89.7 6.1 216 163-400 116-343 (968)
11 cd00116 LRR_RI Leucine-rich re 97.9 1.8E-05 3.9E-10 75.1 6.0 219 162-400 48-289 (319)
12 PLN00113 leucine-rich repeat r 97.7 5.4E-05 1.2E-09 83.1 6.4 38 163-201 138-175 (968)
13 KOG2120 SCF ubiquitin ligase, 97.6 1.5E-06 3.1E-11 78.0 -5.6 201 165-392 185-390 (419)
14 cd00116 LRR_RI Leucine-rich re 97.6 0.00014 3E-09 69.0 6.7 219 163-400 21-261 (319)
15 PLN03210 Resistant to P. syrin 97.5 0.00019 4E-09 79.9 7.8 17 326-342 796-812 (1153)
16 KOG1909 Ran GTPase-activating 97.5 5.1E-05 1.1E-09 69.8 2.4 198 160-372 87-309 (382)
17 PF07723 LRR_2: Leucine Rich R 97.4 0.00028 6.1E-09 39.3 3.3 25 166-190 1-26 (26)
18 KOG4194 Membrane glycoprotein 97.1 0.00017 3.6E-09 70.9 1.5 213 160-389 216-469 (873)
19 KOG3665 ZYG-1-like serine/thre 97.0 0.00032 6.9E-09 72.9 2.0 212 165-397 60-283 (699)
20 KOG3207 Beta-tubulin folding c 96.8 0.00012 2.7E-09 69.2 -2.4 196 128-342 122-336 (505)
21 PF14580 LRR_9: Leucine-rich r 96.7 0.00054 1.2E-08 58.4 0.6 126 163-292 17-151 (175)
22 KOG1909 Ran GTPase-activating 96.6 0.0018 4E-08 59.8 3.3 223 163-400 28-281 (382)
23 KOG1947 Leucine rich repeat pr 96.5 0.00069 1.5E-08 68.1 0.2 40 21-60 42-81 (482)
24 KOG3665 ZYG-1-like serine/thre 96.5 0.0022 4.8E-08 66.7 3.8 60 162-222 145-204 (699)
25 KOG3207 Beta-tubulin folding c 96.2 0.00049 1.1E-08 65.3 -2.4 103 163-265 195-312 (505)
26 KOG1947 Leucine rich repeat pr 96.2 0.00045 9.8E-09 69.4 -3.2 80 162-241 240-328 (482)
27 KOG2982 Uncharacterized conser 95.8 0.012 2.6E-07 53.5 4.5 216 163-386 69-307 (418)
28 PRK15387 E3 ubiquitin-protein 95.7 0.021 4.6E-07 60.1 6.2 15 328-342 441-455 (788)
29 PLN03215 ascorbic acid mannose 94.7 0.026 5.6E-07 53.9 3.3 38 23-60 3-41 (373)
30 KOG4194 Membrane glycoprotein 94.3 0.021 4.5E-07 56.7 1.6 58 165-223 78-135 (873)
31 PRK15386 type III secretion pr 94.3 0.09 2E-06 50.9 5.8 14 190-203 94-107 (426)
32 KOG1259 Nischarin, modulator o 93.9 0.013 2.9E-07 53.2 -0.5 213 157-384 206-450 (490)
33 PRK15387 E3 ubiquitin-protein 93.6 0.17 3.6E-06 53.5 6.8 129 165-312 242-370 (788)
34 KOG0281 Beta-TrCP (transducin 93.3 0.055 1.2E-06 49.9 2.3 37 21-57 72-112 (499)
35 PF13855 LRR_8: Leucine rich r 92.5 0.045 9.8E-07 37.6 0.5 14 187-200 22-35 (61)
36 PF12799 LRR_4: Leucine Rich r 92.3 0.074 1.6E-06 33.9 1.3 35 165-201 1-35 (44)
37 KOG4658 Apoptotic ATPase [Sign 92.1 0.093 2E-06 56.4 2.5 18 275-292 636-653 (889)
38 KOG0444 Cytoskeletal regulator 91.9 0.0017 3.8E-08 64.5 -9.7 84 248-341 216-300 (1255)
39 PF13855 LRR_8: Leucine rich r 91.9 0.2 4.4E-06 34.3 3.3 34 190-224 1-36 (61)
40 KOG2997 F-box protein FBX9 [Ge 91.6 0.15 3.3E-06 46.7 2.9 38 20-57 103-145 (366)
41 PF14580 LRR_9: Leucine-rich r 91.3 0.14 3E-06 43.8 2.3 64 160-224 59-124 (175)
42 KOG0444 Cytoskeletal regulator 91.2 0.0083 1.8E-07 59.9 -5.9 22 157-178 165-186 (1255)
43 KOG1259 Nischarin, modulator o 90.9 0.13 2.8E-06 47.0 1.7 30 213-242 214-245 (490)
44 COG5238 RNA1 Ran GTPase-activa 90.4 0.22 4.8E-06 44.9 2.8 172 160-342 87-282 (388)
45 KOG3864 Uncharacterized conser 89.8 0.06 1.3E-06 46.3 -1.2 41 163-203 123-164 (221)
46 KOG0617 Ras suppressor protein 89.6 0.012 2.6E-07 49.2 -5.4 155 160-343 28-184 (264)
47 PRK15370 E3 ubiquitin-protein 89.5 0.17 3.7E-06 53.5 1.5 54 165-224 241-294 (754)
48 KOG1644 U2-associated snRNP A' 89.4 0.96 2.1E-05 39.2 5.6 80 161-243 60-149 (233)
49 PRK15370 E3 ubiquitin-protein 88.5 0.23 5.1E-06 52.5 1.7 30 281-313 325-355 (754)
50 COG5238 RNA1 Ran GTPase-activa 87.6 2.1 4.5E-05 38.9 6.8 125 273-401 84-226 (388)
51 smart00367 LRR_CC Leucine-rich 87.4 0.33 7.2E-06 26.8 1.1 17 189-205 1-17 (26)
52 KOG4658 Apoptotic ATPase [Sign 86.1 0.2 4.4E-06 53.9 -0.3 102 162-264 542-652 (889)
53 KOG0618 Serine/threonine phosp 85.9 0.26 5.6E-06 51.9 0.3 84 160-245 378-487 (1081)
54 PF13013 F-box-like_2: F-box-l 84.7 1.1 2.3E-05 34.9 3.1 30 23-52 21-50 (109)
55 KOG0618 Serine/threonine phosp 84.6 0.26 5.6E-06 51.8 -0.4 167 157-342 106-274 (1081)
56 PRK15386 type III secretion pr 84.6 1.3 2.8E-05 43.1 4.3 134 163-314 50-187 (426)
57 KOG2123 Uncharacterized conser 84.5 0.1 2.3E-06 47.2 -2.8 73 215-290 21-97 (388)
58 KOG3864 Uncharacterized conser 83.4 0.39 8.3E-06 41.5 0.2 61 167-228 98-166 (221)
59 KOG0472 Leucine-rich repeat pr 82.8 0.19 4.1E-06 47.9 -2.0 38 303-345 504-541 (565)
60 KOG0274 Cdc4 and related F-box 82.7 0.6 1.3E-05 47.4 1.3 39 19-57 103-141 (537)
61 KOG2123 Uncharacterized conser 82.1 0.031 6.8E-07 50.4 -7.0 39 252-290 86-126 (388)
62 KOG1644 U2-associated snRNP A' 81.4 1.6 3.4E-05 37.9 3.1 60 163-223 86-150 (233)
63 KOG2739 Leucine-rich acidic nu 81.3 0.3 6.5E-06 43.8 -1.2 57 190-247 43-104 (260)
64 KOG2982 Uncharacterized conser 81.1 0.49 1.1E-05 43.4 -0.0 99 164-262 44-154 (418)
65 KOG1859 Leucine-rich repeat pr 79.9 0.1 2.2E-06 53.4 -5.2 18 161-178 105-122 (1096)
66 KOG0617 Ras suppressor protein 77.7 0.26 5.6E-06 41.4 -2.6 45 156-200 93-137 (264)
67 PF13516 LRR_6: Leucine Rich r 77.7 0.93 2E-05 24.3 0.5 21 164-184 1-21 (24)
68 PLN03150 hypothetical protein; 77.5 1.6 3.5E-05 45.6 2.5 77 167-244 420-500 (623)
69 KOG2739 Leucine-rich acidic nu 75.5 1.1 2.4E-05 40.2 0.6 81 162-242 62-151 (260)
70 COG4886 Leucine-rich repeat (L 74.8 1.3 2.7E-05 43.4 0.8 140 166-313 141-286 (394)
71 PF12799 LRR_4: Leucine Rich r 74.4 3.3 7.1E-05 26.2 2.4 34 190-224 1-35 (44)
72 PF08387 FBD: FBD; InterPro: 70.1 6.6 0.00014 25.8 3.2 38 303-340 13-50 (51)
73 KOG4237 Extracellular matrix p 66.6 7.6 0.00017 37.3 3.9 92 234-330 274-373 (498)
74 PF13504 LRR_7: Leucine rich r 65.3 2.8 6.2E-05 20.5 0.5 12 190-201 1-12 (17)
75 smart00579 FBD domain in FBox 58.8 15 0.00033 25.8 3.6 40 304-343 5-44 (72)
76 PF09372 PRANC: PRANC domain; 57.3 9.4 0.0002 28.9 2.4 25 22-46 70-94 (97)
77 COG4886 Leucine-rich repeat (L 50.3 4.9 0.00011 39.2 -0.2 167 162-342 113-287 (394)
78 KOG3926 F-box proteins [Amino 43.6 9.8 0.00021 34.4 0.6 48 22-69 200-254 (332)
79 PF00560 LRR_1: Leucine Rich R 40.8 24 0.00053 18.3 1.7 21 282-305 1-21 (22)
80 PLN03150 hypothetical protein; 38.3 18 0.00039 37.8 1.7 68 156-224 433-501 (623)
81 smart00368 LRR_RI Leucine rich 31.0 25 0.00054 19.6 0.8 20 165-184 2-21 (28)
82 KOG4408 Putative Mg2+ and Co2+ 26.5 12 0.00026 34.9 -1.6 39 24-62 8-46 (386)
83 KOG0531 Protein phosphatase 1, 25.1 25 0.00054 34.7 0.1 15 163-177 116-130 (414)
84 KOG0472 Leucine-rich repeat pr 24.7 54 0.0012 32.0 2.2 14 233-246 527-540 (565)
85 COG4829 CatC1 Muconolactone de 21.3 33 0.00071 25.1 0.1 35 27-61 11-47 (98)
86 smart00370 LRR Leucine-rich re 20.6 48 0.001 17.8 0.6 13 165-177 2-14 (26)
87 smart00369 LRR_TYP Leucine-ric 20.6 48 0.001 17.8 0.6 13 165-177 2-14 (26)
88 KOG3007 Mu-crystallin [Amino a 20.5 3.4E+02 0.0074 25.0 6.2 49 378-430 151-199 (333)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.60 E-value=6.6e-17 Score=149.00 Aligned_cols=341 Identities=17% Similarity=0.223 Sum_probs=196.5
Q ss_pred CCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc------ccccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCCCC
Q 014064 26 RFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSR 99 (431)
Q Consensus 26 ~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 99 (431)
.||.|++..|||+|.++...|++++|+-|..+ |.+...++|..+++ ..|-..+.++.|.+
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------g~VV~~~~~Rcgg~ 139 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------GGVVENMISRCGGF 139 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------------CcceehHhhhhccc
Confidence 49999999999999999999999999999864 88887776654411 22333334444566
Q ss_pred eeEEEEEEecCCCCCccHhHHHHHHh-hcCceEEEEEcCCCCCCCc-cccccccccccCCCCCCCCCCCCCEEEEeeE-E
Q 014064 100 INQFRICFRLDAKHKCNITNWVNTAI-AKNVRNFELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAV-N 176 (431)
Q Consensus 100 l~~l~l~~~~~~~~~~~~~~wi~~~~-~~~v~eL~l~~~~~~~~~~-~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~-~ 176 (431)
++.++++...... ....-..+. -+++++|.+..+....+.. ..+. ..|+.|++|.|..| .
T Consensus 140 lk~LSlrG~r~v~----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla-------------~~C~~l~~l~L~~c~~ 202 (483)
T KOG4341|consen 140 LKELSLRGCRAVG----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA-------------RYCRKLRHLNLHSCSS 202 (483)
T ss_pred cccccccccccCC----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHH-------------Hhcchhhhhhhcccch
Confidence 8888886653221 111111222 2367777665553221111 1221 34566777776664 4
Q ss_pred EcchhHHHHHhcCCccceeeeccCCCCceeeee---cCCCCcceEEeeccCCcc-----eEEEeCCceeEEEEecee-ee
Q 014064 177 VTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV---GSSIPLKCLDIQFCYSIK-----EIEISAPNLLSFKYIGQD-IN 247 (431)
Q Consensus 177 ~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~-----~i~i~ap~L~~L~~~~~~-~~ 247 (431)
+++..++.+..+||+|+.|++..|..+..-.+. ..+..++.+...+|...+ .+.-..+.+..+++..+. ++
T Consensus 203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence 455556666666777777777766554331111 123445555555554211 122222333333321110 00
Q ss_pred -----eecCCCCCceeEEEEeecCcchhhHH-HhhhccCCCceEEEeeeceeeecccccc---cCCCccEEEEEEeecCc
Q 014064 248 -----LHVGSLPQLVDVVFHVTPMVQKMHCI-GSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLMNLNISFTAANQ 318 (431)
Q Consensus 248 -----~~~~~~~~L~~l~i~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~ 318 (431)
.+--.+..|+.+...-... ..+.. ..+...+++|+.|.+..+.++.+..+.. ..+.|..|.+.-++.
T Consensus 283 D~~~~~i~~~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~-- 358 (483)
T KOG4341|consen 283 DEDLWLIACGCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL-- 358 (483)
T ss_pred chHHHHHhhhhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce--
Confidence 0000122233222221111 11222 2788899999999998888544433322 256677776655433
Q ss_pred ccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc---ccCccCCccEEEEeeeecCch-hHHHHHHHHhcCcccccE
Q 014064 319 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI---SKHSHQHLKLVELQGFNGREI-DFELAFYVFENATMLEKM 394 (431)
Q Consensus 319 ~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~---~~~~~~~L~~v~i~~~~g~~~-e~~l~~~ll~~a~~Le~m 394 (431)
.....+..+-.+||.|++|.++- +....++|... ..|...+|+.+++.+..+... .++. +.+++.||++
T Consensus 359 ~~d~tL~sls~~C~~lr~lslsh---ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~----l~~c~~Leri 431 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSH---CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH----LSICRNLERI 431 (483)
T ss_pred ehhhhHhhhccCCchhccCChhh---hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH----HhhCccccee
Confidence 34446889999999999999962 33334444322 268889999999999877643 3333 5688999998
Q ss_pred EEEeCCCchhhHHH
Q 014064 395 IIKPSGSRKRTTLK 408 (431)
Q Consensus 395 ~i~~~~~~~~~~~~ 408 (431)
.++...+...+.+.
T Consensus 432 ~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 432 ELIDCQDVTKEAIS 445 (483)
T ss_pred eeechhhhhhhhhH
Confidence 88877765554433
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.1e-15 Score=132.40 Aligned_cols=274 Identities=19% Similarity=0.272 Sum_probs=168.7
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc------ccccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCC
Q 014064 24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRG 97 (431)
Q Consensus 24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 97 (431)
++.|||||+..|||.|+.+|.++++.|||||+++ |..+ ++..+ .+. . ....+.+ + +|
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r-~i~-------p----~~l~~l~-~-rg 160 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGR-NIH-------P----DVLGRLL-S-RG 160 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCC-ccC-------h----hHHHHHH-h-CC
Confidence 7889999999999999999999999999999875 6543 33333 222 1 1122222 2 23
Q ss_pred CCeeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEE
Q 014064 98 SRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNV 177 (431)
Q Consensus 98 ~~l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~ 177 (431)
|..|++.-.+.+ .+ .+... ...++.+++.++++......... -..+..|..|+.|.|.+.++
T Consensus 161 --V~v~Rlar~~~~-~p-rlae~-~~~frsRlq~lDLS~s~it~stl-------------~~iLs~C~kLk~lSlEg~~L 222 (419)
T KOG2120|consen 161 --VIVFRLARSFMD-QP-RLAEH-FSPFRSRLQHLDLSNSVITVSTL-------------HGILSQCSKLKNLSLEGLRL 222 (419)
T ss_pred --eEEEEcchhhhc-Cc-hhhhh-hhhhhhhhHHhhcchhheeHHHH-------------HHHHHHHHhhhhcccccccc
Confidence 666666321111 11 11111 11233357777776542211000 00124678899999999998
Q ss_pred cchhHHHHHhcCCccceeeeccCCCCceee---eecCCCCcceEEeeccCCcceE-----EEeCCceeEEEEeceeeee-
Q 014064 178 TGEVVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKEI-----EISAPNLLSFKYIGQDINL- 248 (431)
Q Consensus 178 ~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i-----~i~ap~L~~L~~~~~~~~~- 248 (431)
+|.-.. -++.-.+|++|+|..|.|++.-. +-.+|++|..|.+++|...... .-..|+|..|+++|+.-.+
T Consensus 223 dD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 223 DDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred CcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 776443 36667899999999999886532 2347889999999999743332 1235889999998874322
Q ss_pred ------ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc--cCCCccEEEEEEeecCccc
Q 014064 249 ------HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR--EFPKLMNLNISFTAANQET 320 (431)
Q Consensus 249 ------~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~ 320 (431)
....+|+|.++.++.+..... ..+..+..++-|++|.++.|-++....+.. ..|.|++|++..+..
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs---- 375 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS---- 375 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC----
Confidence 223578888888774433221 223555677888888888776332222111 167888888766421
Q ss_pred HHHHHHHHhhCCCcceEEE
Q 014064 321 LLGLSFIMKACPFLEKLVL 339 (431)
Q Consensus 321 ~~~l~~ll~~~p~L~~L~i 339 (431)
...+.-+.+.||+|+.-.-
T Consensus 376 dt~mel~~e~~~~lkin~q 394 (419)
T KOG2120|consen 376 DTTMELLKEMLSHLKINCQ 394 (419)
T ss_pred chHHHHHHHhCccccccce
Confidence 2235567778888765443
No 3
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=99.17 E-value=8.3e-11 Score=85.24 Aligned_cols=69 Identities=23% Similarity=0.354 Sum_probs=58.9
Q ss_pred cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEeCCCchh--hHHHHHHhhccccCCCccEEEE
Q 014064 357 KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKR--TTLKNSTNMLKAKLPRGVKLTV 426 (431)
Q Consensus 357 ~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~~~~~--~~~~~~~~~~~~~~s~~~~i~~ 426 (431)
.|..++|+.|+|.+|.|.++|+++++|+++||+.||+|+|..++...+ ..+.+.+..+ +++|+.|+|.|
T Consensus 1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~-~~aS~~c~i~~ 71 (72)
T smart00579 1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSL-PRASSSCQVQF 71 (72)
T ss_pred CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhC-cCCCCceEEEe
Confidence 377789999999999999999999999999999999999999875433 2344555667 99999999987
No 4
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=98.84 E-value=2.9e-09 Score=70.89 Aligned_cols=43 Identities=44% Similarity=0.705 Sum_probs=40.8
Q ss_pred ccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEe
Q 014064 356 SKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKP 398 (431)
Q Consensus 356 ~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~ 398 (431)
+.|..+||+.|++.||.|.++|+++++|+++||++||+|+|..
T Consensus 9 p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~ 51 (51)
T PF08387_consen 9 PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF 51 (51)
T ss_pred ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence 4899999999999999999999999999999999999999863
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.71 E-value=8.8e-09 Score=67.65 Aligned_cols=35 Identities=34% Similarity=0.640 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcc
Q 014064 24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW 58 (431)
Q Consensus 24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw 58 (431)
|+.||+||+.+||++|+.+|.++++.|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.31 E-value=1.1e-08 Score=95.33 Aligned_cols=235 Identities=15% Similarity=0.157 Sum_probs=121.2
Q ss_pred CceEEEEEcCCCCCCCc-cccccccccccCCCCCCCCCCCCCEEEEeeE-EEcchhHHHHHhcCCccceeeeccCCCCce
Q 014064 128 NVRNFELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDLLS 205 (431)
Q Consensus 128 ~v~eL~l~~~~~~~~~~-~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~ 205 (431)
.++++.+..+....... -. ...++||+++|.+.++ ++++..+..+-..|+.|+.|.+..|..++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt-------------~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRT-------------FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred ccccccccccccCCcchhhH-------------HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 57777776655443221 11 1246788888888877 456677777777888888888888887765
Q ss_pred ee---eecCCCCcceEEeeccCCcce--EE---EeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhh
Q 014064 206 LK---VVGSSIPLKCLDIQFCYSIKE--IE---ISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIV 277 (431)
Q Consensus 206 l~---i~~~~~~L~~L~l~~c~~l~~--i~---i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~ 277 (431)
.. +...|++|+.|.+++|+.+.. +. =.+.+++.+..+|+.. ....-+....
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---------------------~~le~l~~~~ 264 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---------------------LELEALLKAA 264 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---------------------ccHHHHHHHh
Confidence 43 334678888888888875433 11 1122233333333210 0011111222
Q ss_pred ccCCCceEEEeeeceeeeccc---ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcc
Q 014064 278 SYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQ 354 (431)
Q Consensus 278 ~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~ 354 (431)
..++-+..+++..+.++.+.. +......|+.|... .+...+...+..+-++|++|+.|.+..... ..+.+..
T Consensus 265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~---fsd~~ft 339 (483)
T KOG4341|consen 265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS--SCTDITDEVLWALGQHCHNLQVLELSGCQQ---FSDRGFT 339 (483)
T ss_pred ccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc--CCCCCchHHHHHHhcCCCceEEEeccccch---hhhhhhh
Confidence 233333333333333222111 11112233333332 233344445667777788888887766432 2333332
Q ss_pred cccCccCCccEEEEeee-ecCchhHHHHHHHHhcCcccccEEEEeCCCchh
Q 014064 355 ISKHSHQHLKLVELQGF-NGREIDFELAFYVFENATMLEKMIIKPSGSRKR 404 (431)
Q Consensus 355 ~~~~~~~~L~~v~i~~~-~g~~~e~~l~~~ll~~a~~Le~m~i~~~~~~~~ 404 (431)
+..-.+.+|+.+.+.+. .|.+.. +.-+-.||+.|+++.+.+.....+
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~t---L~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDGT---LASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred hhhcCChhhhhhcccccceehhhh---HhhhccCCchhccCChhhhhhhhh
Confidence 22333456666666653 344432 222456777787777775554433
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.28 E-value=1.8e-07 Score=61.74 Aligned_cols=38 Identities=39% Similarity=0.593 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhccccc
Q 014064 24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFT 61 (431)
Q Consensus 24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~~~ 61 (431)
|++||+|++.+||++|+..|.++.+.|||+|+++....
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 56799999999999999999999999999999986543
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.23 E-value=1.5e-06 Score=55.08 Aligned_cols=33 Identities=39% Similarity=0.638 Sum_probs=31.3
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHhhhhhhccc
Q 014064 27 FPDDILIHIISGLTLKEAARTSVLSSRWKYLWT 59 (431)
Q Consensus 27 LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~ 59 (431)
||+|++..||++|+.+|..+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999998754
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.18 E-value=4.7e-06 Score=92.40 Aligned_cols=84 Identities=19% Similarity=0.131 Sum_probs=56.8
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEE
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 239 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L 239 (431)
.+..+++|++|.|.+|..-. .+..-+..+++|+.|.+.+|..++.+.....+++|+.|.+.+|..+..+.-..++|+.|
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L 730 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWL 730 (1153)
T ss_pred ccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCee
Confidence 45678899999998874321 23334667889999999998877665443355788999998887655543334566666
Q ss_pred EEece
Q 014064 240 KYIGQ 244 (431)
Q Consensus 240 ~~~~~ 244 (431)
.+.+.
T Consensus 731 ~L~~n 735 (1153)
T PLN03210 731 DLDET 735 (1153)
T ss_pred ecCCC
Confidence 66554
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.99 E-value=7.9e-06 Score=89.68 Aligned_cols=216 Identities=18% Similarity=0.091 Sum_probs=113.4
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceE---EEeCCceeE
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEI---EISAPNLLS 238 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i---~i~ap~L~~ 238 (431)
++++|++|+|++..+.+..- ....++|+.|.|.++.....+ .....+++|+.|.+.++.....+ --..++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 66777777777766543210 134567777777766432111 11123467777777766521111 123467777
Q ss_pred EEEeceee----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccEEEE
Q 014064 239 FKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLNI 311 (431)
Q Consensus 239 L~~~~~~~----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~L~l 311 (431)
|++.++.. +-.++.+++|+.+.+..+..... +..-+..+++|+.|++..+. +. ..+|.. +++|++|.+
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE---IPYEIGGLTSLNHLDLVYNN-LT-GPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCc---CChhHhcCCCCCEEECcCce-ec-cccChhHhCCCCCCEEEC
Confidence 77766532 22345667777777664432211 11334667788888887665 22 122332 455666665
Q ss_pred EEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcc
Q 014064 312 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATM 390 (431)
Q Consensus 312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~ 390 (431)
..+.-. . .+..-+.++++|++|++....- .+..+. -....+|+.+.+.+-.-.. .....+.+.+.
T Consensus 268 ~~n~l~--~--~~p~~l~~l~~L~~L~Ls~n~l------~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~ 333 (968)
T PLN00113 268 YQNKLS--G--PIPPSIFSLQKLISLDLSDNSL------SGEIPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPR 333 (968)
T ss_pred cCCeee--c--cCchhHhhccCcCEEECcCCee------ccCCChhHcCCCCCcEEECCCCccCC----cCChhHhcCCC
Confidence 432111 1 1223455677888888754311 111222 2245678888776532211 11123567889
Q ss_pred cccEEEEeCC
Q 014064 391 LEKMIIKPSG 400 (431)
Q Consensus 391 Le~m~i~~~~ 400 (431)
|+.+.+....
T Consensus 334 L~~L~L~~n~ 343 (968)
T PLN00113 334 LQVLQLWSNK 343 (968)
T ss_pred CCEEECcCCC
Confidence 9999887554
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.90 E-value=1.8e-05 Score=75.06 Aligned_cols=219 Identities=14% Similarity=0.031 Sum_probs=99.2
Q ss_pred CCCCCCCEEEEeeEEEc--chh---HHHHHhcCCccceeeeccCCCCcee-----eeecCCCCcceEEeeccCCcceEEE
Q 014064 162 SGIKSLRSLTLCAVNVT--GEV---VEFFIHNCPLLENLRITQSPDLLSL-----KVVGSSIPLKCLDIQFCYSIKEIEI 231 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~L~~~~~~~~l-----~i~~~~~~L~~L~l~~c~~l~~i~i 231 (431)
..+++|++|.+.+..+. ... +...+..++.|+.|.|.+|...... .+... ++|++|.+.+|.. .....
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~-~~~~~ 125 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGL-GDRGL 125 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCcc-chHHH
Confidence 35577778877777655 222 3334555778888888776532110 11111 3466666666541 10000
Q ss_pred eCCceeEEEEeceeeeeecCCC-CCceeEEEEeecCcc-hhhHHHhhhccCCCceEEEeeeceeeeccc---cccc---C
Q 014064 232 SAPNLLSFKYIGQDINLHVGSL-PQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQRE---F 303 (431)
Q Consensus 232 ~ap~L~~L~~~~~~~~~~~~~~-~~L~~l~i~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~---~ 303 (431)
. ...-.+... ++|+++.+..+.... ....+...+..+++++.|++..+. +.... ++.. +
T Consensus 126 ~------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~ 192 (319)
T cd00116 126 R------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKAN 192 (319)
T ss_pred H------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhC
Confidence 0 000011222 445555555333221 111122344555667777766554 32111 1111 3
Q ss_pred CCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cC--ccCCccEEEEeeeecC-chhH
Q 014064 304 PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KH--SHQHLKLVELQGFNGR-EIDF 378 (431)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~--~~~~L~~v~i~~~~g~-~~e~ 378 (431)
++|++|.+..+.........+...+..+|+|+.|++.... ..+.+.... .+ ....|+.+.+.+..-+ ....
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~----l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN----LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc----CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 4666666654422222233345556667777777775431 111010000 11 1356777766664322 1223
Q ss_pred HHHHHHHhcCcccccEEEEeCC
Q 014064 379 ELAFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 379 ~l~~~ll~~a~~Le~m~i~~~~ 400 (431)
.+++. +.+.+.|+.+.+....
T Consensus 269 ~l~~~-~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 269 DLAEV-LAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHH-HhcCCCccEEECCCCC
Confidence 34443 3333666666665544
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.69 E-value=5.4e-05 Score=83.13 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=18.7
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
.+++|++|.|.++.+.+. +..-+..+++|+.|+|.+|.
T Consensus 138 ~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred ccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCc
Confidence 445566666555554322 12224455555555555543
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=1.5e-06 Score=78.05 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=115.5
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee-cCCCCcceEEeeccCCcceEEEeCCceeEEEEec
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG 243 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~-~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~ 243 (431)
..|++|.|+...++...+..+++.|..|+.|.|.+..--+.+... +...+|++|.++.|..+.+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~------------- 251 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA------------- 251 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-------------
Confidence 569999999999999999999999999999999988654443222 233788888888887433221
Q ss_pred eeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeecee-ee---cccccccCCCccEEEEEEeecCcc
Q 014064 244 QDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNE-VF---AQFSQREFPKLMNLNISFTAANQE 319 (431)
Q Consensus 244 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~-~~---~~~~~~~~~~L~~L~l~~~~~~~~ 319 (431)
....+.++.+|.++++..+...... -...+.+.-+++..|+++++.. +. ...+....++|.+|+|+.+..-..
T Consensus 252 --~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 252 --LQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred --HHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 1223455666666666644322111 1112223334666777766541 11 112222377888888766433222
Q ss_pred cHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccc
Q 014064 320 TLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLE 392 (431)
Q Consensus 320 ~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le 392 (431)
++...+..+|.|++|.+.-+..- .......--..++|.++.+.|.... .-+++ +.+.++.|+
T Consensus 329 ---~~~~~~~kf~~L~~lSlsRCY~i----~p~~~~~l~s~psl~yLdv~g~vsd-t~mel---~~e~~~~lk 390 (419)
T KOG2120|consen 329 ---DCFQEFFKFNYLQHLSLSRCYDI----IPETLLELNSKPSLVYLDVFGCVSD-TTMEL---LKEMLSHLK 390 (419)
T ss_pred ---hHHHHHHhcchheeeehhhhcCC----ChHHeeeeccCcceEEEEeccccCc-hHHHH---HHHhCcccc
Confidence 45667777888888888554211 0000000123456777777665332 23444 333445444
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.59 E-value=0.00014 Score=69.00 Aligned_cols=219 Identities=16% Similarity=0.075 Sum_probs=117.8
Q ss_pred CCCCCCEEEEeeEEEcchh---HHHHHhcCCccceeeeccCCCCc---ee----eeecCCCCcceEEeeccCCcceEEEe
Q 014064 163 GIKSLRSLTLCAVNVTGEV---VEFFIHNCPLLENLRITQSPDLL---SL----KVVGSSIPLKCLDIQFCYSIKEIEIS 232 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~~~~---~l----~i~~~~~~L~~L~l~~c~~l~~i~i~ 232 (431)
.+++|+.|.+.++.+++.. +...+...|.|+.|.+.++..-. .+ .....+++|+.|.+.+|.......
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-- 98 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC-- 98 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH--
Confidence 4567888888888876543 45556677888888887654221 00 000123566666666554210000
Q ss_pred CCceeEEEEeceeeeeecCCCCCceeEEEEeecCc-chhhHHHhhhccC-CCceEEEeeeceeeeccc---ccc---cCC
Q 014064 233 APNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMV-QKMHCIGSIVSYL-PQLKTLELDGCNEVFAQF---SQR---EFP 304 (431)
Q Consensus 233 ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~-~~~~~~~~~~~~~-~~l~~L~l~~~~~~~~~~---~~~---~~~ 304 (431)
+ ........ ++|+.+.+..+... .....+...+..+ ++|+.|.+.++. +.... +.. ...
T Consensus 99 -~----------~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 99 -G----------VLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANR 165 (319)
T ss_pred -H----------HHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCC
Confidence 0 00000011 34666666543322 1222333444566 899999998887 44211 111 145
Q ss_pred CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCC--cccc-cCccCCccEEEEeeeecCc-hhHHH
Q 014064 305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKR--HQIS-KHSHQHLKLVELQGFNGRE-IDFEL 380 (431)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~--~~~~-~~~~~~L~~v~i~~~~g~~-~e~~l 380 (431)
+|++|.+..+.-.......+...+..+++|+.|++....- .+.+ .+.. -..+++|+.+.+.+..-++ .-..+
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i----~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL----TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc----ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 7888888654222122223445566678999999976421 1111 1111 2235789999998754333 22334
Q ss_pred HHHHHhcCcccccEEEEeCC
Q 014064 381 AFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 381 ~~~ll~~a~~Le~m~i~~~~ 400 (431)
+..+....+.|+++.+....
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 242 ASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHhccCCCceEEEccCCC
Confidence 44444456899999988764
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.54 E-value=0.00019 Score=79.90 Aligned_cols=17 Identities=18% Similarity=0.084 Sum_probs=11.3
Q ss_pred HHHhhCCCcceEEEEee
Q 014064 326 FIMKACPFLEKLVLQIW 342 (431)
Q Consensus 326 ~ll~~~p~L~~L~i~~~ 342 (431)
.-+.++++|+.|.|..+
T Consensus 796 ~si~~L~~L~~L~Ls~C 812 (1153)
T PLN03210 796 SSIQNLHKLEHLEIENC 812 (1153)
T ss_pred hhhhCCCCCCEEECCCC
Confidence 34567777777777543
No 16
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.51 E-value=5.1e-05 Score=69.76 Aligned_cols=198 Identities=19% Similarity=0.203 Sum_probs=121.6
Q ss_pred CCCCCCCCCEEEEeeEEEcc---hhHHHHHhcCCccceeeeccCCCCce---eeeecCCCCcceEEeeccCCcceEEEeC
Q 014064 160 GLSGIKSLRSLTLCAVNVTG---EVVEFFIHNCPLLENLRITQSPDLLS---LKVVGSSIPLKCLDIQFCYSIKEIEISA 233 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~---l~i~~~~~~L~~L~l~~c~~l~~i~i~a 233 (431)
.+..+|.|++|+|+...+.. +.+..++++|-.|++|.|.+|- +.. -++. .-|.+|.. ..-.-+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~---~al~~l~~------~kk~~~~ 156 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG---RALFELAV------NKKAASK 156 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH---HHHHHHHH------HhccCCC
Confidence 34577999999999998875 4588999999999999999994 221 1111 12333331 1222356
Q ss_pred CceeEEEEeceee--------eeecCCCCCceeEEEEeecCcchhh-HHHhhhccCCCceEEEeeeceeeec------cc
Q 014064 234 PNLLSFKYIGQDI--------NLHVGSLPQLVDVVFHVTPMVQKMH-CIGSIVSYLPQLKTLELDGCNEVFA------QF 298 (431)
Q Consensus 234 p~L~~L~~~~~~~--------~~~~~~~~~L~~l~i~~~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~------~~ 298 (431)
|.|+.+.+..+.. .-.+...|.|.++++..+.....-. -+..-+..|++|+.|++++.. ... ..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence 7788887764422 1234466889999988765432211 122456789999999998776 221 11
Q ss_pred ccccCCCccEEEEEEeecCcccHHHH-HHHHhhCCCcceEEEEeeccccccCCCCcccc-cC--ccCCccEEEEeeee
Q 014064 299 SQREFPKLMNLNISFTAANQETLLGL-SFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KH--SHQHLKLVELQGFN 372 (431)
Q Consensus 299 ~~~~~~~L~~L~l~~~~~~~~~~~~l-~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~--~~~~L~~v~i~~~~ 372 (431)
..+.+++|+.|.++-+.-.......+ ..+-+..|+|+.|.+.++.- ..++.... .| ...+|+.+.+.+-.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI----t~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI----TRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh----HHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 22237788888887665444444443 44556789999999977521 11111110 11 24678888777744
No 17
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.36 E-value=0.00028 Score=39.34 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.7
Q ss_pred CCCEEEEeeEEEcch-hHHHHHhcCC
Q 014064 166 SLRSLTLCAVNVTGE-VVEFFIHNCP 190 (431)
Q Consensus 166 ~L~~L~L~~~~~~~~-~l~~ll~~cp 190 (431)
+||+|+|.+|.+.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999776 6999999998
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.15 E-value=0.00017 Score=70.85 Aligned_cols=213 Identities=18% Similarity=0.184 Sum_probs=109.3
Q ss_pred CCCCCCCCCEEEEeeEEEcch-hHHHHHhcCCccceeeeccCC-------------CCceeeeec------------CCC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGE-VVEFFIHNCPLLENLRITQSP-------------DLLSLKVVG------------SSI 213 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~-------------~~~~l~i~~------------~~~ 213 (431)
.|.++|.|+.|.|....+..- .+ -+.+.|.|+.|.|.... +++.+++.. .+.
T Consensus 216 ~Fk~L~~L~~LdLnrN~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 216 SFKRLPKLESLDLNRNRIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred Hhhhcchhhhhhccccceeeehhh--hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence 444577777777776655421 11 14456666666665432 111111110 113
Q ss_pred CcceEEeeccCCcceEEEe----CCceeEEEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCce
Q 014064 214 PLKCLDIQFCYSIKEIEIS----APNLLSFKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLK 284 (431)
Q Consensus 214 ~L~~L~l~~c~~l~~i~i~----ap~L~~L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~ 284 (431)
+|+.|.+++.. ++.|.++ +++|+.|+++...+. + .+..+..|+++.+..+. ++++. .-+.++.+|+
T Consensus 294 ~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns----i~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 294 SLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS----IDHLAEGAFVGLSSLH 368 (873)
T ss_pred hhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc----hHHHHhhHHHHhhhhh
Confidence 34444444333 4555554 467777777655432 1 23334556666655322 23332 4456778888
Q ss_pred EEEeeecee---eecccc-cccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCcc
Q 014064 285 TLELDGCNE---VFAQFS-QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSH 360 (431)
Q Consensus 285 ~L~l~~~~~---~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~ 360 (431)
.|+++...- +++... -.+++.|+.|.+..+-- ..+ -.+-+...++||+|++.... + ....+..+..
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql--k~I--~krAfsgl~~LE~LdL~~Na---i---aSIq~nAFe~ 438 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL--KSI--PKRAFSGLEALEHLDLGDNA---I---ASIQPNAFEP 438 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCcee--eec--chhhhccCcccceecCCCCc---c---eeeccccccc
Confidence 888866651 222211 12256677777644311 111 13566788999999885431 1 0111124444
Q ss_pred CCccEEEEee--eecCchhHHHHHHHHhcCc
Q 014064 361 QHLKLVELQG--FNGREIDFELAFYVFENAT 389 (431)
Q Consensus 361 ~~L~~v~i~~--~~g~~~e~~l~~~ll~~a~ 389 (431)
-+|+++.|.. |-..++-..++..+.++-.
T Consensus 439 m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l 469 (873)
T KOG4194|consen 439 MELKELVMNSSSFLCDCQLKWLAQWLYRRKL 469 (873)
T ss_pred chhhhhhhcccceEEeccHHHHHHHHHhccc
Confidence 4777777755 5556666667777765543
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.00 E-value=0.00032 Score=72.85 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=111.1
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE---eCCceeEEEE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI---SAPNLLSFKY 241 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~ap~L~~L~~ 241 (431)
=+|+..++.+.......++.+...+ |++|.|.++...+...... -.++-+.-+..+ + .--+|++|++
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~-------~~idi~~lL~~~-Ln~~sr~nL~~LdI 129 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDD-------ATIDIISLLKDL-LNEESRQNLQHLDI 129 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhh-------hhccHHHHHHHH-HhHHHHHhhhhcCc
Confidence 4677777777776666565443333 9999999876543211100 000000000000 0 0124444444
Q ss_pred eceee-----e-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEE-EEEe
Q 014064 242 IGQDI-----N-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN-ISFT 314 (431)
Q Consensus 242 ~~~~~-----~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~-l~~~ 314 (431)
.|... + -.-.-+|+|+.+.+....... +-+..+..++|+|..|+++++. +..- .+.++|++|+ |.+.
T Consensus 130 ~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 130 SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMR 203 (699)
T ss_pred cccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhcc
Confidence 44311 0 111235666666665322221 1133778899999999998888 4332 2234555554 3332
Q ss_pred ecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccc
Q 014064 315 AANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLE 392 (431)
Q Consensus 315 ~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le 392 (431)
.-.-.....+..++ +..+|+.|+|+........ ..... +|..- |.++++.++.|++-.-++++.++..=|.|+
T Consensus 204 nLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~---~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 204 NLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDT---KIIEQYLECGMV-LPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred CCCCCchhhHHHHh-cccCCCeeeccccccccch---HHHHHHHHhccc-CccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 11112222333333 4789999999876432111 01111 44432 555566666788877888898998778888
Q ss_pred cEEEE
Q 014064 393 KMIIK 397 (431)
Q Consensus 393 ~m~i~ 397 (431)
.+.+.
T Consensus 279 ~i~~~ 283 (699)
T KOG3665|consen 279 QIAAL 283 (699)
T ss_pred hhhhh
Confidence 88744
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00012 Score=69.21 Aligned_cols=196 Identities=20% Similarity=0.154 Sum_probs=120.7
Q ss_pred CceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCCC--c
Q 014064 128 NVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDL--L 204 (431)
Q Consensus 128 ~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~--~ 204 (431)
.++++.++.+.......- .....||+++.|+|+..-++. ..+.++....|+||.|+|...... .
T Consensus 122 kL~~IsLdn~~V~~~~~~-------------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIE-------------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhhheeecCccccccchh-------------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 577788877653321100 123578999999999987765 557888899999999999875421 1
Q ss_pred eeeeecCCCCcceEEeeccCC----cceEEEeCCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhh
Q 014064 205 SLKVVGSSIPLKCLDIQFCYS----IKEIEISAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSI 276 (431)
Q Consensus 205 ~l~i~~~~~~L~~L~l~~c~~----l~~i~i~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~ 276 (431)
.-.....++.||.|.+..|.- ...+....|+|+.|.+.+.... ....-+..|+++.++-+..... + ....
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~-~~~~ 266 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-D-QGYK 266 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-c-cccc
Confidence 111222448899999999972 3345567899999988776311 1222355677777774432211 0 0134
Q ss_pred hccCCCceEEEeeeceeeecccccc--------cCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 277 VSYLPQLKTLELDGCNEVFAQFSQR--------EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 277 ~~~~~~l~~L~l~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
...++.|+.|.+..+. +.....++ .|++|+.|.+..+.-..+.. ..=++..++|+.|.+...
T Consensus 267 ~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s---l~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS---LNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccc---cchhhccchhhhhhcccc
Confidence 5778888888887766 33222222 28899999886542222221 123445677777766543
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.67 E-value=0.00054 Score=58.43 Aligned_cols=126 Identities=24% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--E--eCCceeE
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--I--SAPNLLS 238 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i--~ap~L~~ 238 (431)
+.-.++.|.|.+..++. ++.+-..+..|+.|++.++.- +.+.-...+++|+.|.+++.. +..+. + ..|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--ccchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 44567888888887653 333223567788888877742 222222234677777776554 33332 2 2577888
Q ss_pred EEEeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 239 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 239 L~~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
|.+.+..+. ..+..+|+|+.+.+.-++......|-.-++..+|+|+.|+-....
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 877766442 123456777777776555554444444556667777776654433
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.58 E-value=0.0018 Score=59.80 Aligned_cols=223 Identities=16% Similarity=0.149 Sum_probs=126.0
Q ss_pred CCCCCCEEEEeeEEEcch---hHHHHHhcCCccceeeeccCC-CCceeeeecCCCCcceEEeeccCCcceEEEeCCceeE
Q 014064 163 GIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSP-DLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS 238 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~-~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~ 238 (431)
.+..++.|.|++..|..+ .+...+++-+.|++-.+..-. +.....+. ..|+.| ...-+.+|.|++
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~---e~L~~l--------~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP---EALKML--------SKALLGCPKLQK 96 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH---HHHHHH--------HHHHhcCCceeE
Confidence 446778888888877654 355666666666655554432 11111111 111111 112234566777
Q ss_pred EEEeceeee--------eecCCCCCceeEEEEeecCcchhhH----------HHhhhccCCCceEEEeeeceeeeccc--
Q 014064 239 FKYIGQDIN--------LHVGSLPQLVDVVFHVTPMVQKMHC----------IGSIVSYLPQLKTLELDGCNEVFAQF-- 298 (431)
Q Consensus 239 L~~~~~~~~--------~~~~~~~~L~~l~i~~~~~~~~~~~----------~~~~~~~~~~l~~L~l~~~~~~~~~~-- 298 (431)
++++++.+. -.+.++..|+++.++-+......+. ..+...+-+.|+.+..+... .+...
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~ 175 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGAT 175 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHH
Confidence 776654221 0233567777777774433211111 11445566677777765444 22111
Q ss_pred -c---cccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc--ccCccCCccEEEEeeee
Q 014064 299 -S---QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI--SKHSHQHLKLVELQGFN 372 (431)
Q Consensus 299 -~---~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~--~~~~~~~L~~v~i~~~~ 372 (431)
+ ....++|+.+++.-+.-...+...+..-+..||.|+.|+|+-..+. .+.+..- .-+..++|+.+.+.++.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft---~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT---LEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh---hHHHHHHHHHhcccchheeecccccc
Confidence 0 1114578888877665555566667888899999999999654321 1111111 13456688888887765
Q ss_pred -cCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064 373 -GREIDFELAFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 373 -g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 400 (431)
-+..-..+++.+-+.+|.|+.+.+..+.
T Consensus 253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 253 LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred cccccHHHHHHHHhccCCCCceeccCcch
Confidence 3456678888888889999998877765
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.51 E-value=0.00069 Score=68.07 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=31.6
Q ss_pred CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcccc
Q 014064 21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTF 60 (431)
Q Consensus 21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~~ 60 (431)
.+.....|++....+....+..+...+..++++|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (482)
T KOG1947|consen 42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS 81 (482)
T ss_pred eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence 3556678888888888888888888888888888876444
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.49 E-value=0.0022 Score=66.70 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=44.9
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeec
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQF 222 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~ 222 (431)
.-||+|++|.+.+..+..+++..+..+.|+|..|++.++. ++.+.-.+.+++|+.|.+.+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRN 204 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccC
Confidence 3579999999999999888899999999999999999874 33333333445555555443
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.00049 Score=65.28 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=69.4
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee-cCCCCcceEEeeccCCcc--e--EEEeCCcee
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCYSIK--E--IEISAPNLL 237 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~-~~~~~L~~L~l~~c~~l~--~--i~i~ap~L~ 237 (431)
.+++||+|.|.+|.++-.+++.++..||.|+.|.|....+....... .-+.+|+.|++++...+. . ..-..|+|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 67999999999999998889999999999999999988643221111 123689999998876322 1 222347777
Q ss_pred EEEEeceeee-e---------ecCCCCCceeEEEEeec
Q 014064 238 SFKYIGQDIN-L---------HVGSLPQLVDVVFHVTP 265 (431)
Q Consensus 238 ~L~~~~~~~~-~---------~~~~~~~L~~l~i~~~~ 265 (431)
.|.+....++ + ....+|+|+.+.+..++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 7776644321 1 12345666666666443
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.19 E-value=0.00045 Score=69.40 Aligned_cols=80 Identities=26% Similarity=0.417 Sum_probs=55.8
Q ss_pred CCCCCCCEEEEeeEE-EcchhHHHHHhcCCccceeeeccCCCCce---eeeecCCCCcceEEeeccCCcc-----eEEEe
Q 014064 162 SGIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLS---LKVVGSSIPLKCLDIQFCYSIK-----EIEIS 232 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~---l~i~~~~~~L~~L~l~~c~~l~-----~i~i~ 232 (431)
..+++|+.|.|.++. +++..+..+...||.|+.|.+.+|..++. ..+...++.|++|.+.+|..+. .+...
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 456888888888886 77888888888888999988888876433 2333466788888888887532 22233
Q ss_pred CCceeEEEE
Q 014064 233 APNLLSFKY 241 (431)
Q Consensus 233 ap~L~~L~~ 241 (431)
.|+|+.|.+
T Consensus 320 c~~l~~l~~ 328 (482)
T KOG1947|consen 320 CPNLRELKL 328 (482)
T ss_pred Ccchhhhhh
Confidence 566666554
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.012 Score=53.50 Aligned_cols=216 Identities=10% Similarity=0.063 Sum_probs=119.7
Q ss_pred CCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCCCceee-eecCCCCcceEEeeccC----CcceEEEeCCce
Q 014064 163 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCY----SIKEIEISAPNL 236 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~----~l~~i~i~ap~L 236 (431)
.+..++.|.|.+..+++ ..+..++.+.|.|+.|+|.+..--..+. .+.+..+|+.|.+.+.. ...+.--+-|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45788888888888877 5688899999999999998765332221 22355788888887754 112222345666
Q ss_pred eEEEEeceeeeeec-------CCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc---ccccCCCc
Q 014064 237 LSFKYIGQDINLHV-------GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKL 306 (431)
Q Consensus 237 ~~L~~~~~~~~~~~-------~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L 306 (431)
+.|+++........ .-.+.+..++..-+.. .......++...+|++..+-+..++ +.... -.+.|+.+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-QLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHH-HHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence 66666544221000 0112222222221100 0112223777888999988887776 32221 12226666
Q ss_pred cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCC-CCcccccCccCCccEEEEeeee------cCchhHH
Q 014064 307 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGK-KRHQISKHSHQHLKLVELQGFN------GREIDFE 379 (431)
Q Consensus 307 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~-~~~~~~~~~~~~L~~v~i~~~~------g~~~e~~ 379 (431)
.-|.|....- ..+. -..-|..+|.|..|.+.-+ |.++. .+..+--....+|..|++.+-. ..+.|..
T Consensus 227 ~~LnL~~~~i--dswa-svD~Ln~f~~l~dlRv~~~---Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~ 300 (418)
T KOG2982|consen 227 SCLNLGANNI--DSWA-SVDALNGFPQLVDLRVSEN---PLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERR 300 (418)
T ss_pred hhhhhccccc--ccHH-HHHHHcCCchhheeeccCC---cccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHH
Confidence 6666654322 2222 3456788999999988554 22221 1110111233567777776632 2247788
Q ss_pred HHHHHHh
Q 014064 380 LAFYVFE 386 (431)
Q Consensus 380 l~~~ll~ 386 (431)
|++|.+.
T Consensus 301 fVRyym~ 307 (418)
T KOG2982|consen 301 FVRYYMS 307 (418)
T ss_pred HHHHHhh
Confidence 8888764
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.65 E-value=0.021 Score=60.08 Aligned_cols=15 Identities=7% Similarity=-0.210 Sum_probs=8.0
Q ss_pred HhhCCCcceEEEEee
Q 014064 328 MKACPFLEKLVLQIW 342 (431)
Q Consensus 328 l~~~p~L~~L~i~~~ 342 (431)
+.++++|+.|++...
T Consensus 441 l~~L~~L~~LdLs~N 455 (788)
T PRK15387 441 LIHLSSETTVNLEGN 455 (788)
T ss_pred HhhccCCCeEECCCC
Confidence 344556666665543
No 29
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=94.75 E-value=0.026 Score=53.87 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=34.3
Q ss_pred cCCCCCHHHHHHHHhcCC-hHHHHHHHHHhhhhhhcccc
Q 014064 23 WFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWTF 60 (431)
Q Consensus 23 ~is~LPd~lL~~Ils~L~-~~~~~r~s~vSrrWr~lw~~ 60 (431)
.+++||+|+|..|..+|+ .-|.+|.+.||+.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 378899999999999997 78999999999999987554
No 30
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.29 E-value=0.021 Score=56.68 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=38.2
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeecc
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC 223 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c 223 (431)
+.-++|+|++.++.+-++.. +-..|+|++++|+...-....++...+..|++|.+.+.
T Consensus 78 ~~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N 135 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN 135 (873)
T ss_pred cceeeeeccccccccCcHHH-HhcCCcceeeeeccchhhhcccccccccceeEEeeecc
Confidence 34557888888877655543 56788888888887754333344444456777777654
No 31
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.25 E-value=0.09 Score=50.92 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=7.6
Q ss_pred CccceeeeccCCCC
Q 014064 190 PLLENLRITQSPDL 203 (431)
Q Consensus 190 p~Le~L~L~~~~~~ 203 (431)
+.|+.|.+.+|..+
T Consensus 94 ~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 94 EGLEKLTVCHCPEI 107 (426)
T ss_pred hhhhheEccCcccc
Confidence 45566666655433
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.95 E-value=0.013 Score=53.23 Aligned_cols=213 Identities=20% Similarity=0.165 Sum_probs=95.3
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc--ee----------------------eeecCC
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL--SL----------------------KVVGSS 212 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~l----------------------~i~~~~ 212 (431)
+|-.+..|.+|+++.++.|.. +.+..+...=|.|+.+.+.+...-. .+ ......
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchH
Confidence 343445678888888887742 3344455566888888777642100 00 000011
Q ss_pred CCcceEEeeccCCcceE---EEeCCceeEEEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEE
Q 014064 213 IPLKCLDIQFCYSIKEI---EISAPNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLE 287 (431)
Q Consensus 213 ~~L~~L~l~~c~~l~~i---~i~ap~L~~L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~ 287 (431)
+.|..|++++.. +..+ .--+|.++.|+++.+.+. -.+..+++|+.+.++.+... .+.+.-..+.|.++|.
T Consensus 284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls----~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA----ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH----hhhhhHhhhcCEeeee
Confidence 223333333221 1111 112466666665544332 12334555555555532211 1113334455556665
Q ss_pred eeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc---cCccCCcc
Q 014064 288 LDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS---KHSHQHLK 364 (431)
Q Consensus 288 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~---~~~~~~L~ 364 (431)
+.... ++.-.-...+.+|.+|++..+.- ..+ .-.+-+.+.|+||++.+...+ ...- .+.+. +....+--
T Consensus 359 La~N~-iE~LSGL~KLYSLvnLDl~~N~I--e~l-deV~~IG~LPCLE~l~L~~NP---l~~~-vdYRTKVLa~FGERaS 430 (490)
T KOG1259|consen 359 LAQNK-IETLSGLRKLYSLVNLDLSSNQI--EEL-DEVNHIGNLPCLETLRLTGNP---LAGS-VDYRTKVLARFGERAS 430 (490)
T ss_pred hhhhh-HhhhhhhHhhhhheeccccccch--hhH-HHhcccccccHHHHHhhcCCC---cccc-chHHHHHHHHHhhhhh
Confidence 54444 22211111134455555433211 111 123445667777777765432 1100 00111 22233445
Q ss_pred EEEEeeeecCchhHHHHHHH
Q 014064 365 LVELQGFNGREIDFELAFYV 384 (431)
Q Consensus 365 ~v~i~~~~g~~~e~~l~~~l 384 (431)
.|.+.|-.+.+.|++-++.+
T Consensus 431 E~~LD~~~~~~~ELDTV~Vl 450 (490)
T KOG1259|consen 431 EISLDNEPGNQQELDTVLVL 450 (490)
T ss_pred heecCCCCcchhhhhHHHHH
Confidence 56666666777676666544
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=93.62 E-value=0.17 Score=53.52 Aligned_cols=129 Identities=17% Similarity=0.104 Sum_probs=60.8
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEece
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 244 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~ 244 (431)
++|++|.|.+..++. +. ...+.|+.|.|.++. +..+ .....+|+.|.+.++. +..+....|+|+.|+++++
T Consensus 242 ~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~L--p~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N 312 (788)
T PRK15387 242 PELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHL--PALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN 312 (788)
T ss_pred CCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhhh--hhchhhcCEEECcCCc-cccccccccccceeECCCC
Confidence 566666666554432 11 113456666665553 2211 1111456666666554 4444334567777777765
Q ss_pred eeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEE
Q 014064 245 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNIS 312 (431)
Q Consensus 245 ~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 312 (431)
.+...-...++|..+.+..+... .+.....+|+.|+++... +. .+|....+|+.|.+.
T Consensus 313 ~L~~Lp~lp~~L~~L~Ls~N~L~-------~LP~lp~~Lq~LdLS~N~-Ls--~LP~lp~~L~~L~Ls 370 (788)
T PRK15387 313 QLASLPALPSELCKLWAYNNQLT-------SLPTLPSGLQELSVSDNQ-LA--SLPTLPSELYKLWAY 370 (788)
T ss_pred ccccCCCCcccccccccccCccc-------cccccccccceEecCCCc-cC--CCCCCCcccceehhh
Confidence 43211111223444444321111 222222378888887665 32 234344566666553
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.30 E-value=0.055 Score=49.88 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=34.5
Q ss_pred CCcCCCCC----HHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064 21 EDWFSRFP----DDILIHIISGLTLKEAARTSVLSSRWKYL 57 (431)
Q Consensus 21 ~D~is~LP----d~lL~~Ils~L~~~~~~r~s~vSrrWr~l 57 (431)
.|-++.|| |+|...|||+|...++..+-.+||+|+++
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 57889999 99999999999999999999999999863
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.49 E-value=0.045 Score=37.65 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=6.6
Q ss_pred hcCCccceeeeccC
Q 014064 187 HNCPLLENLRITQS 200 (431)
Q Consensus 187 ~~cp~Le~L~L~~~ 200 (431)
.++|.|+.|.+.++
T Consensus 22 ~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 22 SNLPNLETLDLSNN 35 (61)
T ss_dssp TTGTTESEEEETSS
T ss_pred cCCCCCCEeEccCC
Confidence 34455555555433
No 36
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.28 E-value=0.074 Score=33.90 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=26.2
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
++|++|.|.+..+++ +...++.||+|+.|.+.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 578899998888764 44447889999999998884
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.07 E-value=0.093 Score=56.43 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=10.7
Q ss_pred hhhccCCCceEEEeeece
Q 014064 275 SIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 275 ~~~~~~~~l~~L~l~~~~ 292 (431)
++...+++|+.|.+....
T Consensus 636 ~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSA 653 (889)
T ss_pred chhhhcccccEEEeeccc
Confidence 444556777777765443
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=91.94 E-value=0.0017 Score=64.47 Aligned_cols=84 Identities=23% Similarity=0.196 Sum_probs=42.4
Q ss_pred eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc-cCCCccEEEEEEeecCcccHHHHHH
Q 014064 248 LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR-EFPKLMNLNISFTAANQETLLGLSF 326 (431)
Q Consensus 248 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~ 326 (431)
.++.++.+|.++.++.+... -+...+..+++|+.|++++.. ++.-.... ...+|.+|+++-+ ....+..
T Consensus 216 tsld~l~NL~dvDlS~N~Lp----~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-----QLt~LP~ 285 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLP----IVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-----QLTVLPD 285 (1255)
T ss_pred CchhhhhhhhhccccccCCC----cchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-----hhccchH
Confidence 34455566666655533211 122445566777777777665 32211111 1456666666432 2223444
Q ss_pred HHhhCCCcceEEEEe
Q 014064 327 IMKACPFLEKLVLQI 341 (431)
Q Consensus 327 ll~~~p~L~~L~i~~ 341 (431)
-+-..|.|++|.+..
T Consensus 286 avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANN 300 (1255)
T ss_pred HHhhhHHHHHHHhcc
Confidence 555566677666643
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=91.90 E-value=0.2 Score=34.31 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=19.1
Q ss_pred CccceeeeccCCCCceeeee--cCCCCcceEEeeccC
Q 014064 190 PLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY 224 (431)
Q Consensus 190 p~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~ 224 (431)
|+|+.|.+.+| .++.+.-. ..+++|+.|.+.++.
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~ 36 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN 36 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc
Confidence 57777888777 33333211 234666666666544
No 40
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.61 E-value=0.15 Score=46.74 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=31.8
Q ss_pred cCCcCCCCCHHHHHHHHhc-----CChHHHHHHHHHhhhhhhc
Q 014064 20 LEDWFSRFPDDILIHIISG-----LTLKEAARTSVLSSRWKYL 57 (431)
Q Consensus 20 ~~D~is~LPd~lL~~Ils~-----L~~~~~~r~s~vSrrWr~l 57 (431)
.-+.|+.||||||..||.. ++.++..++|+|||.|+..
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 3456789999999999864 5679999999999999854
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=91.35 E-value=0.14 Score=43.75 Aligned_cols=64 Identities=27% Similarity=0.351 Sum_probs=26.7
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC--CCceeeeecCCCCcceEEeeccC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP--DLLSLKVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~--~~~~l~i~~~~~~L~~L~l~~c~ 224 (431)
++..+++|++|.+.+..++.-. +.+...||+|++|.|.+.. .+..+.--..+++|+.|++.+.+
T Consensus 59 ~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 59 GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp T----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 4567899999999988876521 2233578999999998764 23333333456788888887665
No 42
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=91.17 E-value=0.0083 Score=59.86 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCEEEEeeEEEc
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVT 178 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~ 178 (431)
+|+....+.+|++|.|++..+.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhh
Confidence 4555566677777777766543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=90.88 E-value=0.13 Score=47.04 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=15.0
Q ss_pred CCcceEEeeccC--CcceEEEeCCceeEEEEe
Q 014064 213 IPLKCLDIQFCY--SIKEIEISAPNLLSFKYI 242 (431)
Q Consensus 213 ~~L~~L~l~~c~--~l~~i~i~ap~L~~L~~~ 242 (431)
.+|+.+.++.|. ++..+....|.|..+...
T Consensus 214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~ 245 (490)
T KOG1259|consen 214 RNLKTLKFSALSTENIVDIELLKPTLQTICVH 245 (490)
T ss_pred hhhheeeeeccchhheeceeecCchhheeeee
Confidence 455555555554 233444445555555544
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.43 E-value=0.22 Score=44.94 Aligned_cols=172 Identities=16% Similarity=0.073 Sum_probs=101.3
Q ss_pred CCCCCCCCCEEEEeeEEEcc---hhHHHHHhcCCccceeeeccCCCCce---eeeecCCCCcceEEeeccCCcceEEEeC
Q 014064 160 GLSGIKSLRSLTLCAVNVTG---EVVEFFIHNCPLLENLRITQSPDLLS---LKVVGSSIPLKCLDIQFCYSIKEIEISA 233 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~---l~i~~~~~~L~~L~l~~c~~l~~i~i~a 233 (431)
.+.+||+|++..|+...|.. +.+..++++...|+.|.|.+|- ++. -+|. +.|.+|... .=.-++
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig---kal~~la~n------KKaa~k 156 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG---KALFHLAYN------KKAADK 156 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH---HHHHHHHHH------hhhccC
Confidence 34578888888888887764 3477888888888888888883 221 1222 234444321 112357
Q ss_pred CceeEEEEeceee-e-------eecCCCCCceeEEEEeecCcch-hhH-HHhhhccCCCceEEEeeeceeeec------c
Q 014064 234 PNLLSFKYIGQDI-N-------LHVGSLPQLVDVVFHVTPMVQK-MHC-IGSIVSYLPQLKTLELDGCNEVFA------Q 297 (431)
Q Consensus 234 p~L~~L~~~~~~~-~-------~~~~~~~~L~~l~i~~~~~~~~-~~~-~~~~~~~~~~l~~L~l~~~~~~~~------~ 297 (431)
|.|+.+....+.. . ..+.+-..|..+++..+..... ... +.--+..+.+|+.|++.... ... .
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La 235 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA 235 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH
Confidence 8888887654322 1 1122335788888886654321 122 12334567899999998766 221 1
Q ss_pred cccccCCCccEEEEEEeecCcccHHHHHHHHh--hCCCcceEEEEee
Q 014064 298 FSQREFPKLMNLNISFTAANQETLLGLSFIMK--ACPFLEKLVLQIW 342 (431)
Q Consensus 298 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~--~~p~L~~L~i~~~ 342 (431)
...+..++|++|.+.-|.-+......+..-+. ..|+|..|..++.
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 12223678999998776554444433333222 2588888877664
No 45
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.84 E-value=0.06 Score=46.33 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=19.4
Q ss_pred CCCCCCEEEEeeE-EEcchhHHHHHhcCCccceeeeccCCCC
Q 014064 163 GIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDL 203 (431)
Q Consensus 163 ~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~ 203 (431)
+++.++.|.+..| .++|..++.+-...|+|++|.|.+|..+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI 164 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI 164 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence 3444445555555 3333334444444555555555555443
No 46
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=89.61 E-value=0.012 Score=49.18 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=75.2
Q ss_pred CCCCCCCCCEEEEeeEEEcc--hhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCcee
Q 014064 160 GLSGIKSLRSLTLCAVNVTG--EVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLL 237 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~ 237 (431)
++..+.+.+.|+|++..++. .. ++...+||.|.+.+...-+...-.+++++|++|.+.-.. +.+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppn----ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr----l~~------ 93 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPN----IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR----LNI------ 93 (264)
T ss_pred cccchhhhhhhhcccCceeecCCc----HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh----hhc------
Confidence 34556677777777765542 12 233346667766655321111112234556655543111 100
Q ss_pred EEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064 238 SFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 317 (431)
Q Consensus 238 ~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (431)
.+--+|++|.|+-+.+.++...+. ++.+-+..+..|+.|-+++.. . ..+|....+|+.|++-...
T Consensus 94 --------lprgfgs~p~levldltynnl~e~--~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lr-- 158 (264)
T KOG0617|consen 94 --------LPRGFGSFPALEVLDLTYNNLNEN--SLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLR-- 158 (264)
T ss_pred --------CccccCCCchhhhhhccccccccc--cCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeec--
Confidence 011245566666655555433221 000000112223333343333 1 2456667788888853321
Q ss_pred cccHHHHHHHHhhCCCcceEEEEeec
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQIWN 343 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~~~ 343 (431)
+.+...+..=++....|++|+|++..
T Consensus 159 dndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 159 DNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cCchhhCcHHHHHHHHHHHHhcccce
Confidence 24555666677777888999888754
No 47
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.47 E-value=0.17 Score=53.49 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=26.2
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 224 (431)
++|+.|.|.++.+.. +..-+ ...|+.|.+.++. ++.+.-. -.++|+.|.+++|.
T Consensus 241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N~-L~~LP~~-l~~sL~~L~Ls~N~ 294 (754)
T PRK15370 241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHNK-ISCLPEN-LPEELRYLSVYDNS 294 (754)
T ss_pred ccccEEECcCCccCc--CChhH--hCCCCEEECcCCc-cCccccc-cCCCCcEEECCCCc
Confidence 467777777765542 11111 1356777766442 2222110 11356666666553
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.37 E-value=0.96 Score=39.18 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCCCCCCCEEEEeeEEEcc--hhHHHHHhcCCccceeeeccCCC--CceeeeecCCCCcceEEeeccC-----CcceEEE
Q 014064 161 LSGIKSLRSLTLCAVNVTG--EVVEFFIHNCPLLENLRITQSPD--LLSLKVVGSSIPLKCLDIQFCY-----SIKEIEI 231 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~--~~~l~i~~~~~~L~~L~l~~c~-----~l~~i~i 231 (431)
+.++++|.+|.|....++. ..+.. -.|+|..|.|.+..- +..+.-..+||+|+.|++-+.+ ++....+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 4477889999998887763 33433 357888888877542 3344434466777777776543 2333444
Q ss_pred e-CCceeEEEEec
Q 014064 232 S-APNLLSFKYIG 243 (431)
Q Consensus 232 ~-ap~L~~L~~~~ 243 (431)
. -|+|+.|++.+
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 3 36666666654
No 49
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=88.51 E-value=0.23 Score=52.50 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCceEEEeeeceeeeccccccc-CCCccEEEEEE
Q 014064 281 PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF 313 (431)
Q Consensus 281 ~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~ 313 (431)
++|+.|.++.+. +. .+|.. .++|+.|.++.
T Consensus 325 ~sL~~L~Ls~N~-Lt--~LP~~l~~sL~~L~Ls~ 355 (754)
T PRK15370 325 PGLKTLEAGENA-LT--SLPASLPPELQVLDVSK 355 (754)
T ss_pred ccceeccccCCc-cc--cCChhhcCcccEEECCC
Confidence 466666665554 22 12222 34667766654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.59 E-value=2.1 Score=38.94 Aligned_cols=125 Identities=19% Similarity=0.172 Sum_probs=72.8
Q ss_pred HHhhhccCCCceEEEeeeceeeeccc------ccccCCCccEEEEEEeecCcccHHHHHHHH---------hhCCCcceE
Q 014064 273 IGSIVSYLPQLKTLELDGCNEVFAQF------SQREFPKLMNLNISFTAANQETLLGLSFIM---------KACPFLEKL 337 (431)
Q Consensus 273 ~~~~~~~~~~l~~L~l~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll---------~~~p~L~~L 337 (431)
+...+..||++++..++... +.... +.+.-.+|++|.++.++-+......+..-| .+-|.|+++
T Consensus 84 Ll~aLlkcp~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHHHHhcCCcceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 33666788999998887765 22111 122256888888887755543333333222 346888887
Q ss_pred EEEeeccccccCCCCccccc-CccCCccEEEEeeeecCchh--HHHHHHHHhcCcccccEEEEeCCC
Q 014064 338 VLQIWNNGRRIGKKRHQISK-HSHQHLKLVELQGFNGREID--FELAFYVFENATMLEKMIIKPSGS 401 (431)
Q Consensus 338 ~i~~~~~~~~~~~~~~~~~~-~~~~~L~~v~i~~~~g~~~e--~~l~~~ll~~a~~Le~m~i~~~~~ 401 (431)
......... +....|-.. -++..|++|+|+. .|-..+ ..++-+=+.++..||.+.++-..-
T Consensus 163 icgrNRlen--gs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 163 ICGRNRLEN--GSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred Eeccchhcc--CcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 765432111 000011111 1336899999984 344333 456666678999999998886653
No 51
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.38 E-value=0.33 Score=26.82 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=13.5
Q ss_pred CCccceeeeccCCCCce
Q 014064 189 CPLLENLRITQSPDLLS 205 (431)
Q Consensus 189 cp~Le~L~L~~~~~~~~ 205 (431)
||+|++|.|.+|..+++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 78888888888887654
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=86.12 E-value=0.2 Score=53.89 Aligned_cols=102 Identities=23% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCCCCCEEEEeeEEE-cchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCc---e
Q 014064 162 SGIKSLRSLTLCAVNV-TGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPN---L 236 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~---L 236 (431)
..+|.|++|-+.+... -...-..++...|.|..|+|.+|..+..+ +..+.+-+||.|.++++. +..+...-.+ |
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence 4567888888887742 11112334667888889998887654432 112233566766766654 3333333333 3
Q ss_pred eEEEEecee----eeeecCCCCCceeEEEEee
Q 014064 237 LSFKYIGQD----INLHVGSLPQLVDVVFHVT 264 (431)
Q Consensus 237 ~~L~~~~~~----~~~~~~~~~~L~~l~i~~~ 264 (431)
.+|++.... .+.....+++|+.+.+...
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeecc
Confidence 333333221 1112223566666665543
No 53
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=85.87 E-value=0.26 Score=51.88 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=46.3
Q ss_pred CCCCCCCCCEEEEeeEEEcc---hhHHH------H-------------HhcCCccceeeeccCCCCceeeeecCCCCcce
Q 014064 160 GLSGIKSLRSLTLCAVNVTG---EVVEF------F-------------IHNCPLLENLRITQSPDLLSLKVVGSSIPLKC 217 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~---~~l~~------l-------------l~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~ 217 (431)
.+.+|++||.|+|.+.++.. ..+.+ + +..|+.|+.|...+.......++. .+++|+.
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~-~l~qL~~ 456 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA-QLPQLKV 456 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhh-hcCcceE
Confidence 45688999999999986542 11111 1 233444444444333211111111 2367777
Q ss_pred EEeeccCCcceEEEe----CCceeEEEEecee
Q 014064 218 LDIQFCYSIKEIEIS----APNLLSFKYIGQD 245 (431)
Q Consensus 218 L~l~~c~~l~~i~i~----ap~L~~L~~~~~~ 245 (431)
++++. .++..+.+. .|+|++|+++|..
T Consensus 457 lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDLSC-NNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Eeccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence 77763 335554432 3799999999874
No 54
>PF13013 F-box-like_2: F-box-like domain
Probab=84.74 E-value=1.1 Score=34.86 Aligned_cols=30 Identities=13% Similarity=-0.065 Sum_probs=26.1
Q ss_pred cCCCCCHHHHHHHHhcCChHHHHHHHHHhh
Q 014064 23 WFSRFPDDILIHIISGLTLKEAARTSVLSS 52 (431)
Q Consensus 23 ~is~LPd~lL~~Ils~L~~~~~~r~s~vSr 52 (431)
.+.+||+||+..|+.+-...+...+...++
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999999988877777766
No 55
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=84.61 E-value=0.26 Score=51.84 Aligned_cols=167 Identities=19% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCce
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL 236 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L 236 (431)
+|.++..+.+|+.|.+++..+..- ...+..|..++.+...+...... +.. .+.|++.+....-...+.++--++
T Consensus 106 lP~~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~~~~~~~s~N~~~~~--lg~--~~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNHFGPI--PLVIEVLTAEEELAASNNEKIQR--LGQ--TSIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred CchhHHhhhcccccccchhccCCC--chhHHhhhHHHHHhhhcchhhhh--hcc--ccchhhhhhhhhcccchhcchhhh
Confidence 456666777888888887766542 22244444555555444411111 111 123444433322222333333344
Q ss_pred eE-EEEeceeee-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEe
Q 014064 237 LS-FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFT 314 (431)
Q Consensus 237 ~~-L~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 314 (431)
+. ++++...+. ..+..+++|+.+...-.... .+-...++++.|....+. +........-.||+++.++..
T Consensus 180 ~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls-------~l~~~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~n 251 (1081)
T KOG0618|consen 180 THQLDLRYNEMEVLDLSNLANLEVLHCERNQLS-------ELEISGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISHN 251 (1081)
T ss_pred heeeecccchhhhhhhhhccchhhhhhhhcccc-------eEEecCcchheeeeccCc-ceeeccccccccceeeecchh
Confidence 43 444444332 23334444444443311111 222344555555554444 221111111346667666543
Q ss_pred ecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 315 AANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 315 ~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
....+...+..|++|+.|.+...
T Consensus 252 -----~l~~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 252 -----NLSNLPEWIGACANLEALNANHN 274 (1081)
T ss_pred -----hhhcchHHHHhcccceEecccch
Confidence 22334567777778877776543
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=84.56 E-value=1.3 Score=43.12 Aligned_cols=134 Identities=17% Similarity=0.278 Sum_probs=74.4
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCC-ccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCP-LLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY 241 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 241 (431)
.++++++|.++++.+.. +. ..| .|++|.+.+|..++.+.-.. .++|+.|.+.+|..+..+ .++|+.|.+
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL---P~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL---PESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc---ccccceEEe
Confidence 35788888888774332 11 223 58888888887765432111 157888888888655432 356777777
Q ss_pred eceeeeeecCCC-CCceeEEEEeecCcchhhHHHhhhccC-CCceEEEeeeceeeeccccccc-CCCccEEEEEEe
Q 014064 242 IGQDINLHVGSL-PQLVDVVFHVTPMVQKMHCIGSIVSYL-PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFT 314 (431)
Q Consensus 242 ~~~~~~~~~~~~-~~L~~l~i~~~~~~~~~~~~~~~~~~~-~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~ 314 (431)
.+.... .+..+ ++|+++.+....... ...+...+ ++|+.|.+.++... .+|.. ..+|++|.++..
T Consensus 120 ~~n~~~-~L~~LPssLk~L~I~~~n~~~----~~~lp~~LPsSLk~L~Is~c~~i---~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATD-SIKNVPNGLTSLSINSYNPEN----QARIDNLISPSLKTLSLTGCSNI---ILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCCc-ccccCcchHhheecccccccc----ccccccccCCcccEEEecCCCcc---cCcccccccCcEEEeccc
Confidence 654322 12333 356766653211000 00111223 48999999876621 22322 357888887543
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.54 E-value=0.1 Score=47.16 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred cceEEeeccCCcceEEE--eCCceeEEEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeee
Q 014064 215 LKCLDIQFCYSIKEIEI--SAPNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDG 290 (431)
Q Consensus 215 L~~L~l~~c~~l~~i~i--~ap~L~~L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~ 290 (431)
.+.|...+|. +..|.| .+|.|+.|.++-+.+. -.+..|.+|+++.+.-+...+ ++-+ ..+.++|+|+.|-|..
T Consensus 21 vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s-ldEL-~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 21 VKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES-LDEL-EYLKNLPSLRTLWLDE 97 (388)
T ss_pred hhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc-HHHH-HHHhcCchhhhHhhcc
Confidence 4444444444 343333 3567777776654432 134567788887776433221 1111 3446667777776643
No 58
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.39 E-value=0.39 Score=41.51 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=39.4
Q ss_pred CCEEEEeeEEEcch-----hHHHHHhcCCccceeeeccCCCCceee---eecCCCCcceEEeeccCCcce
Q 014064 167 LRSLTLCAVNVTGE-----VVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKE 228 (431)
Q Consensus 167 L~~L~L~~~~~~~~-----~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~ 228 (431)
.....+.-+..++. .++. +.+++.++.|.+.+|..++... +....++|+.|.|++|+.+.+
T Consensus 98 ~~~~~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 98 ADNVKIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred CCcceEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 33444444444443 3433 6789999999999998776432 223447888888888885443
No 59
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.80 E-value=0.19 Score=47.89 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=28.1
Q ss_pred CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccc
Q 014064 303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG 345 (431)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~ 345 (431)
+.||+.|++.. .+...+..++.+|.+|++|++.+.++.
T Consensus 504 m~nL~tLDL~n-----Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQN-----NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCC-----CchhhCChhhccccceeEEEecCCccC
Confidence 55666666633 456678889999999999999886543
No 60
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.69 E-value=0.6 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=36.2
Q ss_pred CcCCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064 19 NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 57 (431)
Q Consensus 19 ~~~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l 57 (431)
...|.++.||-|+..+||++|+.++.+..+++|+.|+.+
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 457999999999999999999999999999999999864
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.14 E-value=0.031 Score=50.40 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCCceeEEEEeecCcchhh--HHHhhhccCCCceEEEeee
Q 014064 252 SLPQLVDVVFHVTPMVQKMH--CIGSIVSYLPQLKTLELDG 290 (431)
Q Consensus 252 ~~~~L~~l~i~~~~~~~~~~--~~~~~~~~~~~l~~L~l~~ 290 (431)
++|+|+.+++.-++.++..+ |-...+..+|+|++|+-..
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 67777777777665544322 2226677788888876433
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=81.38 E-value=1.6 Score=37.92 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=42.3
Q ss_pred CCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCCCc----eeeeecCCCCcceEEeecc
Q 014064 163 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLL----SLKVVGSSIPLKCLDIQFC 223 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~----~l~i~~~~~~L~~L~l~~c 223 (431)
-+|+|++|.|.+..+.. .+++. +.+||.|+.|.+.+...-. ..-+....|+|+.|+..+-
T Consensus 86 ~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 86 FLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 56899999999987654 33444 7899999999998865321 2333444588888887653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.27 E-value=0.3 Score=43.77 Aligned_cols=57 Identities=23% Similarity=0.206 Sum_probs=30.9
Q ss_pred CccceeeeccCCCCceeeeecCCCCcceEEeeccC-----CcceEEEeCCceeEEEEeceeee
Q 014064 190 PLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY-----SIKEIEISAPNLLSFKYIGQDIN 247 (431)
Q Consensus 190 p~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~-----~l~~i~i~ap~L~~L~~~~~~~~ 247 (431)
-.|+.|.+.++...+...+. .+++||.|.++... .+.-+...+|+|++++++|..+.
T Consensus 43 ~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444445554322222222 23677777776542 12233445689999998888664
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.09 E-value=0.49 Score=43.43 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCC--Cc-eeeeecCCCCcceEEeeccC---CcceEEEeCCce
Q 014064 164 IKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPD--LL-SLKVVGSSIPLKCLDIQFCY---SIKEIEISAPNL 236 (431)
Q Consensus 164 ~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~--~~-~l~i~~~~~~L~~L~l~~c~---~l~~i~i~ap~L 236 (431)
...|+.|.+-++.++. .++..+-+.|..+++|+|.+... +. ...|...+|.|+.|.++..+ .+.....-..+|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 3467788899998875 46777778899999999987632 22 22334455778888877544 122222233467
Q ss_pred eEEEEeceeeee-----ecCCCCCceeEEEE
Q 014064 237 LSFKYIGQDINL-----HVGSLPQLVDVVFH 262 (431)
Q Consensus 237 ~~L~~~~~~~~~-----~~~~~~~L~~l~i~ 262 (431)
+.+.+.|...++ .+...|.+++++++
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 777777765432 23345555555544
No 65
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=79.86 E-value=0.1 Score=53.40 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=14.0
Q ss_pred CCCCCCCCEEEEeeEEEc
Q 014064 161 LSGIKSLRSLTLCAVNVT 178 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~ 178 (431)
+.-|.+|++|.|.+|.+.
T Consensus 105 ifpF~sLr~LElrg~~L~ 122 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLS 122 (1096)
T ss_pred eccccceeeEEecCcchh
Confidence 356789999999998754
No 66
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=77.74 E-value=0.26 Score=41.42 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccC
Q 014064 156 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 200 (431)
Q Consensus 156 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 200 (431)
.+|.++++||.|+.|.|.+..+.+..+..-+-....|+-|.|...
T Consensus 93 ~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence 468899999999999999987765433211112233444555443
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.74 E-value=0.93 Score=24.34 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=12.9
Q ss_pred CCCCCEEEEeeEEEcchhHHH
Q 014064 164 IKSLRSLTLCAVNVTGEVVEF 184 (431)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ 184 (431)
+++|++|.|.++.++++.+..
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 367888888888777765554
No 68
>PLN03150 hypothetical protein; Provisional
Probab=77.53 E-value=1.6 Score=45.55 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=34.0
Q ss_pred CCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee-eecCCCCcceEEeeccCCcceEE---EeCCceeEEEEe
Q 014064 167 LRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIE---ISAPNLLSFKYI 242 (431)
Q Consensus 167 L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~ 242 (431)
++.|.|.+..+.+. +..-+..+++|+.|.|.++.....+. ....+++|+.|.+.++.....+. -..++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 44455554443321 22224555666666666553221111 11233556666665554111111 124566666665
Q ss_pred ce
Q 014064 243 GQ 244 (431)
Q Consensus 243 ~~ 244 (431)
++
T Consensus 499 ~N 500 (623)
T PLN03150 499 GN 500 (623)
T ss_pred CC
Confidence 54
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.48 E-value=1.1 Score=40.21 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCC--CceeeeecCCCCcceEEeeccCCcc------eEEEe
Q 014064 162 SGIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPD--LLSLKVVGSSIPLKCLDIQFCYSIK------EIEIS 232 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~--~~~l~i~~~~~~L~~L~l~~c~~l~------~i~i~ 232 (431)
..+|+|+.|.++..++.. ..+.-++..||+|..|.+.+... +..++-.....+|+.|.+.+|.... .+-.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 367899999999885543 23666677889999999988753 2222222244667777888776322 11223
Q ss_pred CCceeEEEEe
Q 014064 233 APNLLSFKYI 242 (431)
Q Consensus 233 ap~L~~L~~~ 242 (431)
.|+|++|+..
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5666666544
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=74.84 E-value=1.3 Score=43.39 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=68.3
Q ss_pred CCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEe--CCc-eeEEEEe
Q 014064 166 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEIS--APN-LLSFKYI 242 (431)
Q Consensus 166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~--ap~-L~~L~~~ 242 (431)
+|+.|.+.+..+.. +..-+..+|.|+.|.+.++............+.|+.|.+++.. +..+.-. .++ |++|.+.
T Consensus 141 nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence 77777777776543 2123567888888888877543222221123667777777655 3343322 333 6666665
Q ss_pred ce-eee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEE
Q 014064 243 GQ-DIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISF 313 (431)
Q Consensus 243 ~~-~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 313 (431)
+. ... ..+....++..+.+..... .........+++++.|.+.... +..........+++.|.++.
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKL----EDLPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred CCcceecchhhhhcccccccccCCcee----eeccchhccccccceecccccc-ccccccccccCccCEEeccC
Confidence 54 121 1222333333333221110 0001344566667777766655 32222122245555655543
No 71
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=74.39 E-value=3.3 Score=26.24 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=21.7
Q ss_pred CccceeeeccCCCCceeee-ecCCCCcceEEeeccC
Q 014064 190 PLLENLRITQSPDLLSLKV-VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 190 p~Le~L~L~~~~~~~~l~i-~~~~~~L~~L~l~~c~ 224 (431)
|+|+.|.+.++. ++.+.- -..+++|+.|.++++.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 578899998874 333322 3456788888887775
No 72
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=70.09 E-value=6.6 Score=25.75 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEE
Q 014064 303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ 340 (431)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~ 340 (431)
..+|+.+++..-.....+..-+..++++++.|+++.|.
T Consensus 13 ~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 13 LSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred hheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 56888888864434445565677899999999999985
No 73
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=66.58 E-value=7.6 Score=37.34 Aligned_cols=92 Identities=20% Similarity=0.180 Sum_probs=57.3
Q ss_pred CceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEeeeceeeecc--cccccCCCc
Q 014064 234 PNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKL 306 (431)
Q Consensus 234 p~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~~L 306 (431)
|+|+.+++++..+. -.+.++..++++.+.-+ .+.++. ..+.++++|++|++.+.. +... ..-.....|
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N----~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN----KLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSL 348 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcc----hHHHHHHHhhhccccceeeeecCCe-eEEEeccccccccee
Confidence 67888888877543 24566777777777632 233443 777899999999997776 3321 111113455
Q ss_pred cEEE-EEEeecCcccHHHHHHHHhh
Q 014064 307 MNLN-ISFTAANQETLLGLSFIMKA 330 (431)
Q Consensus 307 ~~L~-l~~~~~~~~~~~~l~~ll~~ 330 (431)
.+|. +...++-+....++...++.
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhh
Confidence 6666 34444545667777777764
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=65.28 E-value=2.8 Score=20.47 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=5.3
Q ss_pred CccceeeeccCC
Q 014064 190 PLLENLRITQSP 201 (431)
Q Consensus 190 p~Le~L~L~~~~ 201 (431)
|+|+.|.|.+|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 345555555554
No 75
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=58.75 E-value=15 Score=25.83 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064 304 PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN 343 (431)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 343 (431)
.+|+.+++..-.+...+..-+..+++++|.|+++.|....
T Consensus 5 ~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 5 SSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred heEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 4577777654333445566678899999999999997753
No 76
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=57.35 E-value=9.4 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.5
Q ss_pred CcCCCCCHHHHHHHHhcCChHHHHH
Q 014064 22 DWFSRFPDDILIHIISGLTLKEAAR 46 (431)
Q Consensus 22 D~is~LPd~lL~~Ils~L~~~~~~r 46 (431)
..+..||.|+-..|+++|+..|.-.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999988753
No 77
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=50.32 E-value=4.9 Score=39.19 Aligned_cols=167 Identities=21% Similarity=0.187 Sum_probs=90.9
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcC-CccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE---eCCcee
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNC-PLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI---SAPNLL 237 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~c-p~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~ap~L~ 237 (431)
..++.++.|.+.+..+++ +.....-. ++|+.|.+.+...-....-...+++|+.|.+.++. +..+.- ..++|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCccccc--CccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 345788999998887754 22222233 48888988877532211112345889999999887 444432 778999
Q ss_pred EEEEeceeeee-ec--CCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeec-ccccccCCCccEEEEEE
Q 014064 238 SFKYIGQDINL-HV--GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFA-QFSQREFPKLMNLNISF 313 (431)
Q Consensus 238 ~L~~~~~~~~~-~~--~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 313 (431)
.|.+.+..+.. .- +....|.++.+......... ..+..+.++..+.+.... ... .......++++.|.+.-
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~----~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL----SSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSN 264 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecc----hhhhhcccccccccCCce-eeeccchhccccccceecccc
Confidence 99998876532 11 12333776666643211110 223444455555533332 111 11122244566666543
Q ss_pred eecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 314 TAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 314 ~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
..- ..+.. +....+++.|++...
T Consensus 265 n~i-----~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 265 NQI-----SSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred ccc-----ccccc-ccccCccCEEeccCc
Confidence 211 11222 667778888888663
No 78
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.63 E-value=9.8 Score=34.40 Aligned_cols=48 Identities=10% Similarity=0.279 Sum_probs=37.8
Q ss_pred CcCCCCCHHHHHHHHhcCC-hHHHHHHHHHhhhh------hhcccccceeeeccC
Q 014064 22 DWFSRFPDDILIHIISGLT-LKEAARTSVLSSRW------KYLWTFTTSLDFDKK 69 (431)
Q Consensus 22 D~is~LPd~lL~~Ils~L~-~~~~~r~s~vSrrW------r~lw~~~~~l~~~~~ 69 (431)
=-+.+||.+++..|+-+|+ -+|++.++.+-..- +.+|+.+-.++|...
T Consensus 200 ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~er 254 (332)
T KOG3926|consen 200 LTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNER 254 (332)
T ss_pred CCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3588999999999999998 78888888765444 456887777777666
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=40.79 E-value=24 Score=18.28 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=11.6
Q ss_pred CceEEEeeeceeeecccccccCCC
Q 014064 282 QLKTLELDGCNEVFAQFSQREFPK 305 (431)
Q Consensus 282 ~l~~L~l~~~~~~~~~~~~~~~~~ 305 (431)
+|+.|+++++. +. .+|+.|.+
T Consensus 1 ~L~~Ldls~n~-l~--~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LT--SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ES--EEGTTTTT
T ss_pred CccEEECCCCc-CE--eCChhhcC
Confidence 46777777765 43 34443443
No 80
>PLN03150 hypothetical protein; Provisional
Probab=38.28 E-value=18 Score=37.85 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064 156 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 156 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~ 224 (431)
.+|..+..+++|+.|.|.+..+.+. +...+..++.|+.|+|.++.....+ .....+++|+.|.+.++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 3566677899999999999887653 4444788999999999998643322 112355889999998875
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=31.00 E-value=25 Score=19.62 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=15.2
Q ss_pred CCCCEEEEeeEEEcchhHHH
Q 014064 165 KSLRSLTLCAVNVTGEVVEF 184 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ 184 (431)
++|++|.|++..+.++....
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 57899999988887765443
No 82
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=26.47 E-value=12 Score=34.92 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcccccc
Q 014064 24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTT 62 (431)
Q Consensus 24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~~~~ 62 (431)
+..+|++++++|++++.-+++.++|.+|+|-..+=...|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 446899999999999999999999999999987644333
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=25.08 E-value=25 Score=34.66 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=7.3
Q ss_pred CCCCCCEEEEeeEEE
Q 014064 163 GIKSLRSLTLCAVNV 177 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~ 177 (431)
++++|++|.|++..+
T Consensus 116 ~~~~L~~L~ls~N~I 130 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKI 130 (414)
T ss_pred hhhcchheecccccc
Confidence 445555555554444
No 84
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=24.65 E-value=54 Score=31.95 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=9.4
Q ss_pred CCceeEEEEeceee
Q 014064 233 APNLLSFKYIGQDI 246 (431)
Q Consensus 233 ap~L~~L~~~~~~~ 246 (431)
+.+|+.|.+.|..+
T Consensus 527 mtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 527 MTNLRHLELDGNPF 540 (565)
T ss_pred ccceeEEEecCCcc
Confidence 45777777777643
No 85
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.29 E-value=33 Score=25.10 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhcCChHHHHHHHHHhh--hhhhccccc
Q 014064 27 FPDDILIHIISGLTLKEAARTSVLSS--RWKYLWTFT 61 (431)
Q Consensus 27 LPd~lL~~Ils~L~~~~~~r~s~vSr--rWr~lw~~~ 61 (431)
+||+.=.....++.++|.++..-+-+ .|+++|+..
T Consensus 11 ~PdsMdad~~er~~A~Eka~s~~Lq~~G~~~~lWR~~ 47 (98)
T COG4829 11 VPDSMDADAVERVRAREKARSRELQAQGKLLRLWRRP 47 (98)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhcc
Confidence 45555455566677888888776644 589999844
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=20.62 E-value=48 Score=17.77 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=7.4
Q ss_pred CCCCEEEEeeEEE
Q 014064 165 KSLRSLTLCAVNV 177 (431)
Q Consensus 165 ~~L~~L~L~~~~~ 177 (431)
++|++|.|.+..+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00370 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666665544
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=20.62 E-value=48 Score=17.77 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=7.4
Q ss_pred CCCCEEEEeeEEE
Q 014064 165 KSLRSLTLCAVNV 177 (431)
Q Consensus 165 ~~L~~L~L~~~~~ 177 (431)
++|++|.|.+..+
T Consensus 2 ~~L~~L~L~~N~l 14 (26)
T smart00369 2 PNLRELDLSNNQL 14 (26)
T ss_pred CCCCEEECCCCcC
Confidence 4566666665544
No 88
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=20.46 E-value=3.4e+02 Score=25.03 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCcccccEEEEeCCCchhhHHHHHHhhccccCCCccEEEEeccC
Q 014064 378 FELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCD 430 (431)
Q Consensus 378 ~~l~~~ll~~a~~Le~m~i~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~ 430 (431)
..+++--++--|+|++++|.......-.+.++.+ .+..++.||.+.+|+
T Consensus 151 ~~hi~ih~~~~pslreVrIwnht~e~A~~la~~l----sk~~~~iqie~~~~q 199 (333)
T KOG3007|consen 151 FWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSL----SKLFSNIQIELNQYQ 199 (333)
T ss_pred HHHHHHHHHhcccceEEEeecCChHHHHHHHHHh----hhcccceEEEEEehh
Confidence 3555555566677888888877644444444433 333678888887775
Done!