Query 014064
Match_columns 431
No_of_seqs 149 out of 1665
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 04:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 6.5E-20 2.2E-24 187.8 18.2 152 21-201 3-167 (594)
2 3ogk_B Coronatine-insensitive 99.8 1E-18 3.5E-23 178.9 21.5 298 21-341 6-412 (592)
3 2ast_B S-phase kinase-associat 99.7 2.3E-17 7.7E-22 156.7 5.7 267 21-371 6-282 (336)
4 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 2E-09 6.7E-14 71.9 3.3 38 21-58 6-43 (53)
5 2p1m_B Transport inhibitor res 98.8 1.2E-09 4.2E-14 111.3 2.7 83 162-244 102-194 (594)
6 4fcg_A Uncharacterized protein 98.8 1.2E-08 4E-13 96.1 8.3 170 161-342 100-287 (328)
7 3ogk_B Coronatine-insensitive 98.8 4.9E-08 1.7E-12 99.4 13.3 176 163-341 190-445 (592)
8 2z80_A TOLL-like receptor 2, v 98.6 7.4E-07 2.5E-11 84.6 15.8 216 159-387 94-329 (353)
9 4fmz_A Internalin; leucine ric 98.5 1.5E-07 5.3E-12 89.0 7.5 213 161-400 106-322 (347)
10 2ca6_A RAN GTPase-activating p 98.4 4.5E-08 1.5E-12 94.3 1.4 206 161-372 56-314 (386)
11 4fmz_A Internalin; leucine ric 98.4 4.2E-07 1.4E-11 85.9 7.6 211 161-400 84-298 (347)
12 1z7x_W Ribonuclease inhibitor; 98.4 7.7E-08 2.6E-12 94.8 2.3 258 127-400 28-324 (461)
13 2z80_A TOLL-like receptor 2, v 98.4 4.1E-06 1.4E-10 79.4 13.7 168 165-343 52-233 (353)
14 1o6v_A Internalin A; bacterial 98.4 1.5E-06 5.1E-11 85.8 10.6 210 161-400 86-298 (466)
15 4fcg_A Uncharacterized protein 98.3 1.3E-07 4.3E-12 89.0 1.8 220 88-340 71-309 (328)
16 1h6u_A Internalin H; cell adhe 98.3 6.4E-07 2.2E-11 83.4 6.4 166 161-343 59-228 (308)
17 1z7x_W Ribonuclease inhibitor; 98.3 5.1E-07 1.7E-11 88.9 5.7 174 166-342 86-294 (461)
18 2ast_B S-phase kinase-associat 98.3 6.6E-08 2.3E-12 91.1 -1.0 167 162-335 115-299 (336)
19 2z81_A CD282 antigen, TOLL-lik 98.3 6.7E-06 2.3E-10 82.7 13.3 221 165-398 26-260 (549)
20 2z81_A CD282 antigen, TOLL-lik 98.3 1E-05 3.4E-10 81.5 14.4 179 159-343 68-262 (549)
21 1o6v_A Internalin A; bacterial 98.3 1.3E-06 4.5E-11 86.2 7.6 210 161-400 108-320 (466)
22 3o53_A Protein LRIM1, AGAP0063 98.2 3.1E-06 1.1E-10 79.0 9.5 243 115-397 20-270 (317)
23 2z66_A Variable lymphocyte rec 98.2 1.1E-06 3.8E-11 81.5 5.5 210 161-385 48-274 (306)
24 3rgz_A Protein brassinosteroid 98.1 6.6E-07 2.3E-11 94.1 2.7 227 157-400 92-354 (768)
25 1ozn_A Reticulon 4 receptor; N 98.1 1.7E-06 5.7E-11 79.4 4.9 63 161-224 52-116 (285)
26 2id5_A Lingo-1, leucine rich r 98.1 7E-06 2.4E-10 81.1 9.5 171 160-341 75-257 (477)
27 1h6u_A Internalin H; cell adhe 98.1 2.6E-06 8.8E-11 79.3 5.8 187 162-372 38-228 (308)
28 3oja_A Leucine-rich immune mol 98.1 2.3E-06 7.9E-11 84.9 5.4 210 128-374 35-250 (487)
29 3zyj_A Leucine-rich repeat-con 98.1 2.6E-06 9E-11 83.4 5.5 208 159-386 82-306 (440)
30 3zyi_A Leucine-rich repeat-con 98.1 3.6E-06 1.2E-10 82.7 6.2 206 159-385 93-316 (452)
31 4ezg_A Putative uncharacterize 98.1 2.6E-06 8.9E-11 73.6 4.5 15 327-341 176-190 (197)
32 3o53_A Protein LRIM1, AGAP0063 98.0 5.5E-06 1.9E-10 77.3 6.4 212 163-400 32-248 (317)
33 3rgz_A Protein brassinosteroid 98.0 9.4E-07 3.2E-11 92.9 1.2 213 162-399 148-378 (768)
34 3oja_A Leucine-rich immune mol 98.0 3.6E-06 1.2E-10 83.5 5.0 211 162-399 31-247 (487)
35 2z63_A TOLL-like receptor 4, v 98.0 1E-05 3.5E-10 81.7 8.4 99 157-262 297-404 (570)
36 2ca6_A RAN GTPase-activating p 98.0 1E-06 3.5E-11 84.7 0.9 180 162-342 91-313 (386)
37 2ra8_A Uncharacterized protein 98.0 2.9E-06 9.8E-11 80.6 3.8 79 162-242 136-227 (362)
38 3zyi_A Leucine-rich repeat-con 98.0 2E-06 6.8E-11 84.5 2.4 15 278-292 263-277 (452)
39 3vq2_A TLR4, TOLL-like recepto 98.0 1.8E-06 6.2E-11 88.1 2.0 97 160-262 302-407 (606)
40 1ozn_A Reticulon 4 receptor; N 98.0 5.9E-06 2E-10 75.7 5.0 205 164-384 31-250 (285)
41 3o6n_A APL1; leucine-rich repe 97.9 3.4E-06 1.2E-10 81.1 3.2 97 234-341 205-304 (390)
42 3oja_B Anopheles plasmodium-re 97.9 1.7E-06 5.8E-11 88.2 1.0 81 277-371 274-355 (597)
43 3vq2_A TLR4, TOLL-like recepto 97.9 3.6E-06 1.2E-10 85.8 3.4 123 161-292 281-410 (606)
44 3o6n_A APL1; leucine-rich repe 97.9 5.8E-06 2E-10 79.5 4.6 58 280-342 225-282 (390)
45 2id5_A Lingo-1, leucine rich r 97.9 1.4E-05 4.9E-10 78.9 7.4 175 160-343 147-331 (477)
46 4ecn_A Leucine-rich repeat pro 97.9 1E-06 3.5E-11 93.1 -0.9 173 157-342 440-654 (876)
47 3v47_A TOLL-like receptor 5B a 97.9 1.1E-05 3.8E-10 79.1 6.5 60 276-341 294-356 (455)
48 3v47_A TOLL-like receptor 5B a 97.9 2.3E-06 7.8E-11 84.0 1.4 85 159-245 73-165 (455)
49 3l2o_B F-box only protein 4; s 97.9 1.9E-06 6.5E-11 77.4 0.8 34 24-57 5-38 (312)
50 3e4g_A ATP synthase subunit S, 97.9 6.5E-06 2.2E-10 69.1 3.9 63 163-225 83-151 (176)
51 1h6t_A Internalin B; cell adhe 97.9 8.4E-06 2.9E-10 75.1 4.7 146 160-342 63-210 (291)
52 2e31_A FBS1, F-box only protei 97.9 4.9E-06 1.7E-10 75.6 2.9 37 21-57 48-85 (297)
53 2ell_A Acidic leucine-rich nuc 97.8 3.9E-06 1.3E-10 70.4 1.5 126 165-292 24-158 (168)
54 1h6t_A Internalin B; cell adhe 97.8 2.1E-05 7E-10 72.4 6.2 97 161-262 86-186 (291)
55 3zyj_A Leucine-rich repeat-con 97.8 3.9E-06 1.3E-10 82.1 1.4 127 161-292 132-266 (440)
56 3t6q_A CD180 antigen; protein- 97.8 3.8E-06 1.3E-10 85.6 1.3 105 156-262 292-408 (606)
57 4glp_A Monocyte differentiatio 97.8 1.1E-05 3.7E-10 75.0 4.2 109 100-224 66-180 (310)
58 3e4g_A ATP synthase subunit S, 97.8 4.1E-06 1.4E-10 70.3 1.1 60 165-225 61-126 (176)
59 3goz_A Leucine-rich repeat-con 97.8 7E-06 2.4E-10 78.1 2.8 38 305-342 226-263 (362)
60 2z66_A Variable lymphocyte rec 97.8 8.8E-06 3E-10 75.4 3.4 217 164-400 27-259 (306)
61 1m9s_A Internalin B; cell inva 97.8 6.5E-06 2.2E-10 83.8 2.6 143 160-313 60-206 (605)
62 2z63_A TOLL-like receptor 4, v 97.8 5.9E-06 2E-10 83.5 2.2 226 157-400 274-529 (570)
63 3bz5_A Internalin-J, INLJ; leu 97.8 1.4E-05 4.7E-10 78.6 4.8 160 161-342 81-243 (457)
64 1ogq_A PGIP-2, polygalacturona 97.8 9.5E-06 3.2E-10 75.6 3.4 40 160-200 96-135 (313)
65 1m9s_A Internalin B; cell inva 97.8 1.5E-05 5E-10 81.1 5.0 122 161-292 83-208 (605)
66 3rfs_A Internalin B, repeat mo 97.7 1.2E-05 4.2E-10 73.1 3.4 125 160-292 58-192 (272)
67 3goz_A Leucine-rich repeat-con 97.7 1.2E-05 4E-10 76.5 3.3 137 254-395 138-287 (362)
68 1ogq_A PGIP-2, polygalacturona 97.7 7.3E-06 2.5E-10 76.3 1.8 170 159-341 70-253 (313)
69 3t6q_A CD180 antigen; protein- 97.7 8.9E-06 3E-10 82.9 2.5 128 160-292 273-411 (606)
70 1xku_A Decorin; proteoglycan, 97.7 1.9E-05 6.6E-10 73.9 4.2 40 161-201 72-111 (330)
71 2o6q_A Variable lymphocyte rec 97.7 2E-05 6.8E-10 71.6 4.0 58 165-224 37-96 (270)
72 2z7x_B TOLL-like receptor 1, v 97.7 0.00037 1.2E-08 69.5 13.6 80 160-244 64-148 (520)
73 1wwl_A Monocyte differentiatio 97.7 2.6E-05 8.8E-10 72.5 4.5 85 126-224 94-184 (312)
74 4eco_A Uncharacterized protein 97.7 2.1E-06 7.3E-11 88.2 -3.4 174 157-342 198-412 (636)
75 3g06_A SSPH2 (leucine-rich rep 97.6 2.8E-05 9.4E-10 79.3 4.5 114 213-342 181-294 (622)
76 2z62_A TOLL-like receptor 4, v 97.6 2.1E-05 7.3E-10 71.6 3.3 123 165-292 28-160 (276)
77 1xku_A Decorin; proteoglycan, 97.6 4E-05 1.4E-09 71.7 5.1 167 165-341 52-225 (330)
78 2z62_A TOLL-like receptor 4, v 97.6 1.9E-05 6.7E-10 71.8 2.4 174 160-342 47-234 (276)
79 3rfs_A Internalin B, repeat mo 97.6 5.8E-05 2E-09 68.6 5.2 167 163-342 39-215 (272)
80 1xeu_A Internalin C; cellular 97.6 7.8E-05 2.7E-09 67.4 5.9 38 161-201 59-96 (263)
81 3g06_A SSPH2 (leucine-rich rep 97.6 0.00012 4.1E-09 74.6 7.8 11 360-370 283-293 (622)
82 3bz5_A Internalin-J, INLJ; leu 97.6 7.4E-05 2.5E-09 73.4 5.9 135 162-310 124-260 (457)
83 1p9a_G Platelet glycoprotein I 97.5 2.5E-05 8.4E-10 71.9 2.3 58 165-224 31-88 (290)
84 2z7x_B TOLL-like receptor 1, v 97.5 0.00062 2.1E-08 67.8 12.7 13 331-343 246-258 (520)
85 2je0_A Acidic leucine-rich nuc 97.5 5.9E-06 2E-10 67.7 -2.0 59 165-224 17-75 (149)
86 3j0a_A TOLL-like receptor 5; m 97.5 5.9E-05 2E-09 80.1 5.1 101 159-262 284-389 (844)
87 4ecn_A Leucine-rich repeat pro 97.5 4.3E-06 1.5E-10 88.4 -3.7 12 389-400 827-838 (876)
88 3oja_B Anopheles plasmodium-re 97.5 3.2E-05 1.1E-09 78.8 2.7 96 234-343 254-356 (597)
89 2xwt_C Thyrotropin receptor; s 97.5 0.00029 9.9E-09 62.5 8.5 167 165-341 31-214 (239)
90 4ezg_A Putative uncharacterize 97.5 6E-05 2.1E-09 64.9 3.8 129 160-313 61-190 (197)
91 4eco_A Uncharacterized protein 97.5 0.00018 6E-09 73.9 7.6 191 127-341 249-466 (636)
92 3v7d_B Cell division control p 97.5 2.7E-05 9.1E-10 76.2 1.4 38 20-57 11-48 (464)
93 4glp_A Monocyte differentiatio 97.4 2.8E-05 9.5E-10 72.2 1.0 215 165-398 64-303 (310)
94 1ziw_A TOLL-like receptor 3; i 97.4 4.1E-05 1.4E-09 79.1 2.0 36 165-201 381-416 (680)
95 3j0a_A TOLL-like receptor 5; m 97.4 0.00045 1.5E-08 73.3 9.9 40 161-200 119-158 (844)
96 1ziw_A TOLL-like receptor 3; i 97.4 3.7E-05 1.3E-09 79.5 1.5 16 385-400 580-595 (680)
97 2ft3_A Biglycan; proteoglycan, 97.3 4E-05 1.4E-09 71.8 0.9 14 328-341 237-250 (332)
98 2ft3_A Biglycan; proteoglycan, 97.3 5.5E-05 1.9E-09 70.9 1.7 223 160-398 73-329 (332)
99 2o6q_A Variable lymphocyte rec 97.3 0.00014 4.9E-09 65.9 4.4 82 160-244 56-143 (270)
100 1wwl_A Monocyte differentiatio 97.3 7.1E-05 2.4E-09 69.5 2.4 39 163-201 93-132 (312)
101 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00012 4.3E-09 71.1 3.3 38 20-57 15-52 (445)
102 1p22_A F-BOX/WD-repeat protein 97.2 8.1E-05 2.8E-09 72.3 1.3 36 21-56 8-47 (435)
103 3a79_B TLR6, VLRB.59, TOLL-lik 97.2 0.0008 2.7E-08 67.8 8.6 100 160-263 71-178 (562)
104 1a9n_A U2A', U2A'; complex (nu 97.2 8.9E-05 3E-09 62.5 1.2 79 162-244 16-98 (176)
105 2xwt_C Thyrotropin receptor; s 97.2 0.0003 1E-08 62.3 4.7 166 160-340 50-234 (239)
106 1jl5_A Outer protein YOPM; leu 97.1 0.00024 8.2E-09 69.7 3.3 153 165-342 215-367 (454)
107 3a79_B TLR6, VLRB.59, TOLL-lik 97.0 0.0015 5.2E-08 65.7 8.9 119 165-292 52-180 (562)
108 1xeu_A Internalin C; cellular 97.0 0.00034 1.1E-08 63.2 3.6 143 162-315 38-183 (263)
109 1p9a_G Platelet glycoprotein I 97.0 0.00026 9E-09 64.9 2.5 163 160-332 50-224 (290)
110 3m19_A Variable lymphocyte rec 97.0 0.00056 1.9E-08 61.2 4.3 123 165-292 35-166 (251)
111 3un9_A NLR family member X1; l 96.9 7E-05 2.4E-09 71.4 -1.9 165 165-342 72-249 (372)
112 1jl5_A Outer protein YOPM; leu 96.9 0.00052 1.8E-08 67.3 3.9 158 160-342 190-347 (454)
113 3m19_A Variable lymphocyte rec 96.8 0.00052 1.8E-08 61.4 2.7 128 160-292 54-190 (251)
114 2ell_A Acidic leucine-rich nuc 96.8 0.00016 5.6E-09 60.3 -0.7 100 161-264 45-157 (168)
115 1ds9_A Outer arm dynein; leuci 96.8 2.3E-05 7.7E-10 67.7 -6.2 60 161-224 44-104 (198)
116 3cvr_A Invasion plasmid antige 96.7 0.00049 1.7E-08 69.2 2.3 73 163-244 98-170 (571)
117 2o6s_A Variable lymphocyte rec 96.6 0.00071 2.4E-08 58.5 1.9 145 164-342 27-175 (208)
118 4ay9_X Follicle-stimulating ho 96.5 0.0043 1.5E-07 58.3 7.4 60 275-342 196-256 (350)
119 2o6s_A Variable lymphocyte rec 96.4 0.00048 1.7E-08 59.6 -0.3 81 161-244 48-134 (208)
120 4g8a_A TOLL-like receptor 4; l 96.3 0.017 5.9E-07 58.5 11.0 77 165-244 52-134 (635)
121 2je0_A Acidic leucine-rich nuc 96.3 0.00021 7E-09 58.3 -3.0 114 157-289 34-148 (149)
122 3e6j_A Variable lymphocyte rec 96.2 0.0016 5.4E-08 57.3 2.2 125 165-313 40-168 (229)
123 2v9t_B SLIT homolog 2 protein 96.2 0.0021 7.1E-08 56.2 2.8 145 165-332 32-181 (220)
124 1a9n_A U2A', U2A'; complex (nu 96.1 0.009 3.1E-07 49.9 6.3 131 187-342 16-150 (176)
125 3sb4_A Hypothetical leucine ri 96.1 0.0066 2.3E-07 56.4 6.0 94 100-201 27-135 (329)
126 2v70_A SLIT-2, SLIT homolog 2 96.1 0.0015 5.1E-08 57.1 1.4 59 165-224 32-92 (220)
127 3cvr_A Invasion plasmid antige 96.1 0.0027 9.3E-08 63.8 3.2 178 124-342 56-240 (571)
128 1ds9_A Outer arm dynein; leuci 96.0 0.00044 1.5E-08 59.4 -2.5 149 165-338 18-180 (198)
129 4g8a_A TOLL-like receptor 4; l 95.9 0.016 5.6E-07 58.7 8.4 102 160-264 71-183 (635)
130 2xot_A Amphoterin-induced prot 95.7 0.0042 1.4E-07 58.7 2.6 122 165-292 39-174 (361)
131 4ay9_X Follicle-stimulating ho 95.5 0.015 5.3E-07 54.5 5.7 80 165-246 30-116 (350)
132 1dce_A Protein (RAB geranylger 95.2 0.0041 1.4E-07 62.6 0.6 102 166-292 442-544 (567)
133 1w8a_A SLIT protein; signaling 95.1 0.012 4E-07 50.0 3.2 79 165-244 29-112 (192)
134 1io0_A Tropomodulin; LRR prote 95.0 0.0045 1.5E-07 52.4 0.3 20 181-200 27-46 (185)
135 2v9t_B SLIT homolog 2 protein 95.0 0.0078 2.7E-07 52.4 1.8 100 160-262 51-160 (220)
136 3e6j_A Variable lymphocyte rec 94.9 0.0077 2.6E-07 52.8 1.4 64 159-224 58-123 (229)
137 3un9_A NLR family member X1; l 94.7 0.0024 8.2E-08 60.7 -2.5 37 165-201 101-137 (372)
138 2v70_A SLIT-2, SLIT homolog 2 94.5 0.011 3.7E-07 51.6 1.5 64 160-224 52-116 (220)
139 1dce_A Protein (RAB geranylger 93.8 0.039 1.3E-06 55.4 4.1 151 160-338 404-566 (567)
140 2wfh_A SLIT homolog 2 protein 93.8 0.025 8.4E-07 48.1 2.2 106 164-292 30-137 (193)
141 1io0_A Tropomodulin; LRR prote 93.7 0.042 1.4E-06 46.3 3.5 122 273-400 28-162 (185)
142 2ra8_A Uncharacterized protein 93.3 0.55 1.9E-05 44.0 10.8 139 250-399 168-317 (362)
143 2o6r_A Variable lymphocyte rec 92.9 0.031 1.1E-06 46.5 1.4 59 164-224 27-87 (177)
144 2wfh_A SLIT homolog 2 protein 92.1 0.039 1.3E-06 46.8 1.0 65 158-224 47-113 (193)
145 2o6r_A Variable lymphocyte rec 92.1 0.045 1.5E-06 45.5 1.3 64 160-224 47-111 (177)
146 4b8c_D Glucose-repressible alc 92.0 0.025 8.5E-07 58.7 -0.5 105 159-267 218-329 (727)
147 2xot_A Amphoterin-induced prot 92.0 0.072 2.5E-06 50.1 2.8 124 163-292 62-200 (361)
148 4fdw_A Leucine rich hypothetic 91.9 0.27 9.3E-06 46.9 6.8 14 186-199 176-189 (401)
149 1w8a_A SLIT protein; signaling 91.7 0.071 2.4E-06 45.1 2.2 62 161-224 50-113 (192)
150 4b8c_D Glucose-repressible alc 90.4 0.066 2.3E-06 55.5 0.9 105 183-292 217-327 (727)
151 2r9u_A Variable lymphocyte rec 89.7 0.11 3.7E-06 43.2 1.5 58 165-224 33-92 (174)
152 3g39_A Variable lymphocyte rec 87.1 0.24 8.3E-06 40.8 2.0 78 165-245 30-113 (170)
153 3g39_A Variable lymphocyte rec 86.6 0.24 8.3E-06 40.8 1.7 62 160-223 49-112 (170)
154 2r9u_A Variable lymphocyte rec 86.1 0.31 1.1E-05 40.3 2.1 64 159-224 51-116 (174)
155 2ifg_A High affinity nerve gro 83.2 0.39 1.3E-05 44.5 1.6 65 157-224 24-91 (347)
156 3rw6_A Nuclear RNA export fact 82.7 0.36 1.2E-05 43.1 1.1 39 163-201 168-207 (267)
157 3sb4_A Hypothetical leucine ri 82.1 1.6 5.3E-05 40.1 5.2 36 165-201 202-237 (329)
158 4fs7_A Uncharacterized protein 80.3 0.61 2.1E-05 44.1 1.8 36 159-198 156-193 (394)
159 1pgv_A TMD-1, tropomodulin TMD 75.4 1.5 5.2E-05 37.0 2.6 123 273-400 33-168 (197)
160 2ifg_A High affinity nerve gro 69.2 1.7 5.8E-05 40.1 1.6 63 160-224 51-114 (347)
161 3rw6_A Nuclear RNA export fact 68.5 1.9 6.6E-05 38.4 1.8 62 276-338 191-257 (267)
162 4gt6_A Cell surface protein; l 55.2 9.1 0.00031 35.9 3.9 71 234-311 311-385 (394)
163 4fdw_A Leucine rich hypothetic 54.3 4.3 0.00015 38.4 1.5 92 165-263 248-354 (401)
164 4fs7_A Uncharacterized protein 52.5 12 0.00042 34.9 4.4 48 234-286 343-393 (394)
165 4gt6_A Cell surface protein; l 34.8 26 0.0009 32.6 3.6 118 160-291 260-388 (394)
166 4h09_A Hypothetical leucine ri 28.4 15 0.00053 33.9 0.7 37 249-289 281-318 (379)
167 4a5z_A MITD1, MIT domain-conta 26.2 2.4E+02 0.0083 22.5 7.2 46 357-402 29-79 (163)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=6.5e-20 Score=187.85 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=89.8
Q ss_pred CCcCCCCCHHHHHHHHhcCC-hHHHHHHHHHhhhhhhccc-ccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCCC
Q 014064 21 EDWFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWT-FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGS 98 (431)
Q Consensus 21 ~D~is~LPd~lL~~Ils~L~-~~~~~r~s~vSrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 98 (431)
.|+|+.||||||.+||+||| .+|+++++.|||||+++.. ....+++... ... . . ...+... +
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~~-----~-~-------~~~~~~~--~ 66 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNC-YAV-----S-P-------ATVIRRF--P 66 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESST-TSS-----C-H-------HHHHHHC--T
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccc-ccc-----C-H-------HHHHhhC--C
Confidence 48999999999999999999 9999999999999998721 1223344322 110 0 0 1222222 3
Q ss_pred CeeEEEEEEecCC--------CCCccHhHHHHHHhh--cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014064 99 RINQFRICFRLDA--------KHKCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLR 168 (431)
Q Consensus 99 ~l~~l~l~~~~~~--------~~~~~~~~wi~~~~~--~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~ 168 (431)
.++++.+...... .....+..|+..... .++++|++..+.........+. .++++|+
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-------------~~~~~L~ 133 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA-------------KSFKNFK 133 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-------------HHCTTCC
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH-------------HhCCCCc
Confidence 4888888653110 112456788887764 3899999976532211001111 1457777
Q ss_pred EEEEeeE-EEcchhHHHHHhcCCccceeeeccCC
Q 014064 169 SLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 169 ~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
+|.|.++ .+++..+..++.+||+|++|.|.+|.
T Consensus 134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 7777777 55555566767777777777777664
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1e-18 Score=178.92 Aligned_cols=298 Identities=11% Similarity=0.086 Sum_probs=147.8
Q ss_pred CCcCC----CCCHHHHHHHHhcC-ChHHHHHHHHHhhhhhhcccccc-eeeeccCcccCCCCCchhHhHHHHHHHHHHHh
Q 014064 21 EDWFS----RFPDDILIHIISGL-TLKEAARTSVLSSRWKYLWTFTT-SLDFDKKVKYMSFPPDYQQSKYISWVNKVLEL 94 (431)
Q Consensus 21 ~D~is----~LPd~lL~~Ils~L-~~~~~~r~s~vSrrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~ 94 (431)
.|+++ .||||+|.+||+|| +.+|+++++.|||||++++.... .+.+... +. ..+..++..
T Consensus 6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~--~~------------~~~~~~~~~ 71 (592)
T 3ogk_B 6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC--YT------------ATPDRLSRR 71 (592)
T ss_dssp ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG--GG------------SCHHHHHHH
T ss_pred hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec--cc------------cChHHHHHh
Confidence 45555 89999999999999 79999999999999999854332 1222111 11 112233333
Q ss_pred cCCCCeeEEEEEEecC--------CCCCccHhHHHHHHhh--cCceEEEEEcCCCCCCCccc----cccccccccCC---
Q 014064 95 HRGSRINQFRICFRLD--------AKHKCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYE----IPQECYKNLQS--- 157 (431)
Q Consensus 95 ~~~~~l~~l~l~~~~~--------~~~~~~~~~wi~~~~~--~~v~eL~l~~~~~~~~~~~~----lp~~~~~~l~l--- 157 (431)
.+. ++++.+..... ....+....|+...+. +++++|++............ +|. .+..+.+
T Consensus 72 ~~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~-~L~~L~L~~~ 148 (592)
T 3ogk_B 72 FPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD-DLETLKLDKC 148 (592)
T ss_dssp CTT--CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGG-GCCEEEEESC
T ss_pred CCC--CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccc-cCcEEECcCC
Confidence 332 88888855211 1123455667776653 37888888755322110000 111 0111110
Q ss_pred --------CCCCCCCCCCCEEEEeeEEEcchh---HHHHHhcCCccceeeeccCCCC--c--ee-eeecCCCCcceEEee
Q 014064 158 --------GCGLSGIKSLRSLTLCAVNVTGEV---VEFFIHNCPLLENLRITQSPDL--L--SL-KVVGSSIPLKCLDIQ 221 (431)
Q Consensus 158 --------p~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~~~--~--~l-~i~~~~~~L~~L~l~ 221 (431)
+....++|+|++|.|.++.+++.. +..+..+||.|+.|.+.++..- . .+ .+...+++|+.|.+.
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 111124567777777766654332 4445555555555555443221 0 00 111234566666665
Q ss_pred ccC------------CcceEEE----------------------------------------eCCceeEEEEeceeee--
Q 014064 222 FCY------------SIKEIEI----------------------------------------SAPNLLSFKYIGQDIN-- 247 (431)
Q Consensus 222 ~c~------------~l~~i~i----------------------------------------~ap~L~~L~~~~~~~~-- 247 (431)
+|. .++.+.+ ..++|++|++.++...
T Consensus 229 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp SCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred CccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 543 1111211 1345666666554321
Q ss_pred ---eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeee----------ceeeeccccc---ccCCCccEEEE
Q 014064 248 ---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDG----------CNEVFAQFSQ---REFPKLMNLNI 311 (431)
Q Consensus 248 ---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~----------~~~~~~~~~~---~~~~~L~~L~l 311 (431)
..+..+++|+.+.+. .... ...+..+...+++|+.|.+.. +..+....+. ..+++|++|.+
T Consensus 309 ~~~~~~~~~~~L~~L~L~-~~~~--~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR-NVIG--DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE-GGGH--HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred HHHHHHHhCcCCCEEecc-CccC--HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 113456666666665 1111 111224455667777777763 3222221111 12567777766
Q ss_pred EEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064 312 SFTAANQETLLGLSFIMKACPFLEKLVLQI 341 (431)
Q Consensus 312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 341 (431)
. +...+...+..+..+||+|++|.+..
T Consensus 386 ~---~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 386 Y---VSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp E---ESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred e---cCCccHHHHHHHHhhCCCCcEEEEee
Confidence 2 22233344555556677777777754
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=2.3e-17 Score=156.68 Aligned_cols=267 Identities=17% Similarity=0.191 Sum_probs=139.2
Q ss_pred CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhccc---ccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCC
Q 014064 21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT---FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRG 97 (431)
Q Consensus 21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 97 (431)
...|+.||||++.+||++|+.+|+++++.|||+|+++.. ....+++... .+. . ..
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~-------~----~~---------- 63 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLH-------P----DV---------- 63 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCC-------H----HH----------
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCC-------H----HH----------
Confidence 346899999999999999999999999999999999842 1223444333 111 0 11
Q ss_pred CCeeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEE
Q 014064 98 SRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNV 177 (431)
Q Consensus 98 ~~l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~ 177 (431)
+......+++.+++...... ..++...++++|++|+|.++.+
T Consensus 64 -----------------------~~~~~~~~l~~L~l~~n~l~---------------~~~~~~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 64 -----------------------TGRLLSQGVIAFRCPRSFMD---------------QPLAEHFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp -----------------------HHHHHHTTCSEEECTTCEEC---------------SCCCSCCCCBCCCEEECTTCEE
T ss_pred -----------------------HHhhhhccceEEEcCCcccc---------------ccchhhccCCCCCEEEccCCCc
Confidence 11122223333333211100 0011234678889999988888
Q ss_pred cchhHHHHHhcCCccceeeeccCCCCce-eeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCc
Q 014064 178 TGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQL 256 (431)
Q Consensus 178 ~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L 256 (431)
++..+..++..||+|+.|.|.+|...+. ...-..+++|++|.+.+|..+.... .+..+..+++|
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~---------------l~~~~~~~~~L 170 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA---------------LQTLLSSCSRL 170 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH---------------HHHHHHHCTTC
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH---------------HHHHHhcCCCC
Confidence 7777888888889999999888853211 1112345788888888774222100 00112233444
Q ss_pred eeEEEEee-cCcchhhHHHhhhccCC-CceEEEeeece-eeecccccc---cCCCccEEEEEEeecCcccHHHHHHHHhh
Q 014064 257 VDVVFHVT-PMVQKMHCIGSIVSYLP-QLKTLELDGCN-EVFAQFSQR---EFPKLMNLNISFTAANQETLLGLSFIMKA 330 (431)
Q Consensus 257 ~~l~i~~~-~~~~~~~~~~~~~~~~~-~l~~L~l~~~~-~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~ll~~ 330 (431)
+.+.+..+ ...+ ..+...+..++ +|+.|.++++. .+....++. .+++|++|.++.+... +.. ....+..
T Consensus 171 ~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l--~~~-~~~~l~~ 245 (336)
T 2ast_B 171 DELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML--KND-CFQEFFQ 245 (336)
T ss_dssp CEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC--CGG-GGGGGGG
T ss_pred CEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC--CHH-HHHHHhC
Confidence 44444322 1110 01224445566 66666666553 122222221 2566666666433110 111 1123456
Q ss_pred CCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeee
Q 014064 331 CPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGF 371 (431)
Q Consensus 331 ~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~ 371 (431)
+|+|++|++..... ..+.+. ..-..+++|+.+.+.|.
T Consensus 246 l~~L~~L~l~~~~~---~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 246 LNYLQHLSLSRCYD---IIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCEEECTTCTT---CCGGGG-GGGGGCTTCCEEECTTS
T ss_pred CCCCCEeeCCCCCC---CCHHHH-HHHhcCCCCCEEeccCc
Confidence 67777777744320 011110 01122566777777665
No 4
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.82 E-value=2e-09 Score=71.88 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=33.3
Q ss_pred CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcc
Q 014064 21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW 58 (431)
Q Consensus 21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw 58 (431)
.+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999763
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.80 E-value=1.2e-09 Score=111.31 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee---eeecCCCCcceEEeeccCC-------cceEEE
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYS-------IKEIEI 231 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~-------l~~i~i 231 (431)
..+++|++|+|.++.+++..+..+...||+|+.|.|.+|..++.. .+...+++|++|.+.+|.- +..+.-
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 367999999999999888888887778999999999999654431 2222568899999887750 111222
Q ss_pred eCCceeEEEEece
Q 014064 232 SAPNLLSFKYIGQ 244 (431)
Q Consensus 232 ~ap~L~~L~~~~~ 244 (431)
..|+|++|++.+.
T Consensus 182 ~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 182 TYTSLVSLNISCL 194 (594)
T ss_dssp TCCCCCEEECTTC
T ss_pred cCCcCcEEEeccc
Confidence 3457777776654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.77 E-value=1.2e-08 Score=96.14 Aligned_cols=170 Identities=21% Similarity=0.248 Sum_probs=86.2
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE----------
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE---------- 230 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---------- 230 (431)
+.++++|++|.|.+..+. .+..-+..+++|+.|.|.++...........+++|+.|.+.+|.....+.
T Consensus 100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 344566666666655544 12222455566666666655322111111234556666666554322211
Q ss_pred --EeCCceeEEEEeceeee---eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---
Q 014064 231 --ISAPNLLSFKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE--- 302 (431)
Q Consensus 231 --i~ap~L~~L~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~--- 302 (431)
-..++|+.|++.+..+. -.++.+++|+.+.+..+..... ..-+..+++|+.|.++.+. +. ..++..
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l----~~~l~~l~~L~~L~Ls~n~-~~-~~~p~~~~~ 251 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL----GPAIHHLPKLEELDLRGCT-AL-RNYPPIFGG 251 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC----CGGGGGCTTCCEEECTTCT-TC-CBCCCCTTC
T ss_pred hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC----chhhccCCCCCEEECcCCc-ch-hhhHHHhcC
Confidence 12566777776665332 2345677777777775433311 1234667788888887655 11 122332
Q ss_pred CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
+++|++|.|..+... . .+..-+..+++|++|+|...
T Consensus 252 l~~L~~L~L~~n~~~--~--~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 252 RAPLKRLILKDCSNL--L--TLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCCCCEEECTTCTTC--C--BCCTTGGGCTTCCEEECTTC
T ss_pred CCCCCEEECCCCCch--h--hcchhhhcCCCCCEEeCCCC
Confidence 556666666432111 1 12223567788888888553
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.77 E-value=4.9e-08 Score=99.45 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=101.5
Q ss_pred CCCCCCEEEEeeEEEc---chhHHHHHhcCCccceeeeccCCC------------Cceeeee------------------
Q 014064 163 GIKSLRSLTLCAVNVT---GEVVEFFIHNCPLLENLRITQSPD------------LLSLKVV------------------ 209 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~~~~------------~~~l~i~------------------ 209 (431)
++++|++|+|.+..++ ...+..++.+||+|+.|.|.+|.. ++.+.+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 5688888888877665 355777778888888888877631 1111111
Q ss_pred --------------------cCCCCcceEEeeccCCcce-----EEEeCCceeEEEEecee----eeeecCCCCCceeEE
Q 014064 210 --------------------GSSIPLKCLDIQFCYSIKE-----IEISAPNLLSFKYIGQD----INLHVGSLPQLVDVV 260 (431)
Q Consensus 210 --------------------~~~~~L~~L~l~~c~~l~~-----i~i~ap~L~~L~~~~~~----~~~~~~~~~~L~~l~ 260 (431)
..+++|++|.+.+|. +.. +.-..|+|+.|.+.+.. .......+++|+.+.
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 123567777777765 211 11235888888887431 112234578888888
Q ss_pred EEe----------ecCcchhhHHHhhhccCCCceEEEeeeceeeecccc---cccCCCccEEEEEEee-cCccc----HH
Q 014064 261 FHV----------TPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---QREFPKLMNLNISFTA-ANQET----LL 322 (431)
Q Consensus 261 i~~----------~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~-~~~~~----~~ 322 (431)
+.- ...... ..+..+...+++|+.|.+.+.. +....+ ...+++|++|++.... +...+ ..
T Consensus 349 L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred eecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 872 111111 1122555678888888885444 332221 1226778888875421 11111 12
Q ss_pred HHHHHHhhCCCcceEEEEe
Q 014064 323 GLSFIMKACPFLEKLVLQI 341 (431)
Q Consensus 323 ~l~~ll~~~p~L~~L~i~~ 341 (431)
++..++.+|++|++|.+..
T Consensus 427 ~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHhCCCCCEEEEec
Confidence 4666777788888888854
No 8
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.62 E-value=7.4e-07 Score=84.58 Aligned_cols=216 Identities=12% Similarity=0.106 Sum_probs=139.4
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee---eecCCCCcceEEeeccCCcceEEE----
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKEIEI---- 231 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~i---- 231 (431)
..+.++++|++|.|.+..+++- ....+..+++|+.|.+.++... .+. ....+++|+.|.+.++..+..+.-
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred hhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 3567889999999999887642 2344788999999999988532 221 233568999999999854555432
Q ss_pred eCCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc---c--cc
Q 014064 232 SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---Q--RE 302 (431)
Q Consensus 232 ~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---~--~~ 302 (431)
..++|+.|++.+.... ..+..+++|+.+.+..+.... .-..+...+++|+.|+++... +..... . ..
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL---LLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGET 247 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT---HHHHHHHHTTTEEEEEEESCB-CTTCCCC------C
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc---chhhhhhhcccccEEECCCCc-cccccccccccccc
Confidence 2478999999876442 245678889998888554321 111445668999999998876 332111 1 11
Q ss_pred CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccccc--CccCCccEEEEee--eecCchhH
Q 014064 303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK--HSHQHLKLVELQG--FNGREIDF 378 (431)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~--~~g~~~e~ 378 (431)
...++.+.+....-.......+...+..+++|++|++....-. ..+.. ..+++|+.+.+.+ +.+....+
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-------~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-------ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 4567777775543332334456677899999999999654211 11221 2457899999988 44544445
Q ss_pred HHHHHHHhc
Q 014064 379 ELAFYVFEN 387 (431)
Q Consensus 379 ~l~~~ll~~ 387 (431)
..+...+++
T Consensus 321 ~~l~~~~~~ 329 (353)
T 2z80_A 321 DYLSRWLNK 329 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.50 E-value=1.5e-07 Score=88.99 Aligned_cols=213 Identities=17% Similarity=0.178 Sum_probs=114.8
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 238 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 238 (431)
+.++++|++|.|.++.+.+-.- +..++.|+.|.+.+|.....+.....+++|+.|.+.+|. +..+. -..++|+.
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS 181 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence 4566777777777666544211 566777777777776544443333445667777776664 11111 12466777
Q ss_pred EEEeceeee-e-ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064 239 FKYIGQDIN-L-HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA 316 (431)
Q Consensus 239 L~~~~~~~~-~-~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 316 (431)
|++.+.... + .+..+++|+.+.+..+..... ..+..+++|+.|.++++. +........+++|++|.++.+.-
T Consensus 182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC
T ss_pred EEccCCcccccccccCCCccceeecccCCCCCC-----chhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCcc
Confidence 777665332 1 144566666666654332211 114667777777776665 32221122366777777654321
Q ss_pred CcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEE
Q 014064 317 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII 396 (431)
Q Consensus 317 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i 396 (431)
... ..+..+|+|++|.+....- .. ++.-....+|+.+.+.+..-...... .+.+.+.|+++.+
T Consensus 256 --~~~----~~~~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L 318 (347)
T 4fmz_A 256 --SDI----NAVKDLTKLKMLNVGSNQI----SD---ISVLNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFL 318 (347)
T ss_dssp --CCC----GGGTTCTTCCEEECCSSCC----CC---CGGGGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEEC
T ss_pred --CCC----hhHhcCCCcCEEEccCCcc----CC---ChhhcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEc
Confidence 111 2356777787777754311 10 11123456788887777543332222 2456788888877
Q ss_pred EeCC
Q 014064 397 KPSG 400 (431)
Q Consensus 397 ~~~~ 400 (431)
....
T Consensus 319 ~~n~ 322 (347)
T 4fmz_A 319 SQNH 322 (347)
T ss_dssp CSSS
T ss_pred cCCc
Confidence 7654
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.42 E-value=4.5e-08 Score=94.25 Aligned_cols=206 Identities=17% Similarity=0.149 Sum_probs=115.6
Q ss_pred CCCCCCCCEEEEeeEEEc---c---hh---HHHHHhcCCccceeeeccCCCCc----ee-eeecCCCCcceEEeeccCCc
Q 014064 161 LSGIKSLRSLTLCAVNVT---G---EV---VEFFIHNCPLLENLRITQSPDLL----SL-KVVGSSIPLKCLDIQFCYSI 226 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~---~---~~---l~~ll~~cp~Le~L~L~~~~~~~----~l-~i~~~~~~L~~L~l~~c~~l 226 (431)
+..+++|++|.|.++.+. + .. +...+..+++|+.|.|.++..-. .+ .....+++|++|.+.+|. +
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l 134 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L 134 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence 456788888888887433 1 12 33345778888888888875322 11 111345788888888876 2
Q ss_pred ceE---EEe-C-------------CceeEEEEeceeee--------eecCCCCCceeEEEEeecCcc-hhhHHHh-hhcc
Q 014064 227 KEI---EIS-A-------------PNLLSFKYIGQDIN--------LHVGSLPQLVDVVFHVTPMVQ-KMHCIGS-IVSY 279 (431)
Q Consensus 227 ~~i---~i~-a-------------p~L~~L~~~~~~~~--------~~~~~~~~L~~l~i~~~~~~~-~~~~~~~-~~~~ 279 (431)
... .+. + |+|++|.+.++.+. -.+..+++|+.+.+..+.... ....+.. .+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 110 011 1 78888888766432 123356788888777543321 1111223 5677
Q ss_pred CCCceEEEeeeceeeec---cccc---ccCCCccEEEEEEeecCcccHHHHHHHHhh--CCCcceEEEEeeccccccCCC
Q 014064 280 LPQLKTLELDGCNEVFA---QFSQ---REFPKLMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQIWNNGRRIGKK 351 (431)
Q Consensus 280 ~~~l~~L~l~~~~~~~~---~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~--~p~L~~L~i~~~~~~~~~~~~ 351 (431)
+++|+.|.++.+. +.. ..++ ..+++|++|.|+.+.-.......+...+.. +|+|++|.+....- ...
T Consensus 215 ~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i----~~~ 289 (386)
T 2ca6_A 215 CQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----ELD 289 (386)
T ss_dssp CTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC----BHH
T ss_pred CCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC----CHH
Confidence 8888888887766 321 1122 226677777775432221222334555544 78888888865321 111
Q ss_pred Cc--cccc--CccCCccEEEEeeee
Q 014064 352 RH--QISK--HSHQHLKLVELQGFN 372 (431)
Q Consensus 352 ~~--~~~~--~~~~~L~~v~i~~~~ 372 (431)
+. .+.. ..+++|+.+.+.+-.
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc
Confidence 11 1111 224788888887744
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.40 E-value=4.2e-07 Score=85.93 Aligned_cols=211 Identities=13% Similarity=0.140 Sum_probs=127.5
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 238 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 238 (431)
+.++++|++|.|.++.+++- . -+..+++|+.|.+.++... .+.....+++|+.|.+.+|.....+. -..++|++
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred hhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence 46778888888887766542 1 2667788888888777532 22113345778888887775333221 13467888
Q ss_pred EEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064 239 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA 316 (431)
Q Consensus 239 L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 316 (431)
|.+.+.... ..+..+++|+.+.+..+..... ..+..+++|+.|.+..+. +........+++|++|.++.+.-
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-----SPLASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCccccc-----ccccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCcc
Confidence 887766432 1255677788877764433221 225677888888887765 33222223367888888755322
Q ss_pred CcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEE
Q 014064 317 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII 396 (431)
Q Consensus 317 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i 396 (431)
.... . +..+|+|++|++....-. . .+.-....+|+.+.+.+-.-..- . .+.+.+.|+.+.+
T Consensus 234 --~~~~---~-~~~l~~L~~L~l~~n~l~----~---~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~L 294 (347)
T 4fmz_A 234 --TDLS---P-LANLSQLTWLEIGTNQIS----D---INAVKDLTKLKMLNVGSNQISDI--S----VLNNLSQLNSLFL 294 (347)
T ss_dssp --CCCG---G-GTTCTTCCEEECCSSCCC----C---CGGGTTCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEEC
T ss_pred --CCCc---c-hhcCCCCCEEECCCCccC----C---ChhHhcCCCcCEEEccCCccCCC--h----hhcCCCCCCEEEC
Confidence 2221 1 778899999988653211 1 11223457888888877532221 1 2567899999988
Q ss_pred EeCC
Q 014064 397 KPSG 400 (431)
Q Consensus 397 ~~~~ 400 (431)
....
T Consensus 295 ~~n~ 298 (347)
T 4fmz_A 295 NNNQ 298 (347)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 8765
No 12
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.39 E-value=7.7e-08 Score=94.79 Aligned_cols=258 Identities=14% Similarity=0.105 Sum_probs=121.5
Q ss_pred cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCC----ccceeeeccCCC
Q 014064 127 KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCP----LLENLRITQSPD 202 (431)
Q Consensus 127 ~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~L~L~~~~~ 202 (431)
++++.+++..+.........+| ..+..+++|++|.|++..+.+..+..+...++ .|+.|.|.+|..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~----------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDIS----------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHH----------HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred CCccEEEccCCCCCHHHHHHHH----------HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence 4788888776542211001111 12345678888888887777666666666655 688888887753
Q ss_pred Cc----e-eeeecCCCCcceEEeeccCCcceEEE---------eCCceeEEEEeceeeee--------ecCCCCCceeEE
Q 014064 203 LL----S-LKVVGSSIPLKCLDIQFCYSIKEIEI---------SAPNLLSFKYIGQDINL--------HVGSLPQLVDVV 260 (431)
Q Consensus 203 ~~----~-l~i~~~~~~L~~L~l~~c~~l~~i~i---------~ap~L~~L~~~~~~~~~--------~~~~~~~L~~l~ 260 (431)
.. . ...-..+++|++|.++++. +....+ ..++|++|.+.+..+.. .+..+++|+.+.
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 21 1 1112345778888877765 221100 12357777776553321 122356666666
Q ss_pred EEeecCcch-hhHHH-hhhccCCCceEEEeeeceeeeccc---ccc---cCCCccEEEEEEeecCcccHHHHH-HHHhhC
Q 014064 261 FHVTPMVQK-MHCIG-SIVSYLPQLKTLELDGCNEVFAQF---SQR---EFPKLMNLNISFTAANQETLLGLS-FIMKAC 331 (431)
Q Consensus 261 i~~~~~~~~-~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~---~~~---~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~~ 331 (431)
+..+..... ...+. .+....++|+.|.++.+. +.... ++. ..++|++|.++.+.-.......+. .+...+
T Consensus 177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~ 255 (461)
T 1z7x_W 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC
Confidence 664332211 11111 222345566777766554 32211 111 145666666643311111111111 122246
Q ss_pred CCcceEEEEeeccccccCCCCc--cccc-CccCCccEEEEeeeecCc-hhHHHHHHHHhcCcccccEEEEeCC
Q 014064 332 PFLEKLVLQIWNNGRRIGKKRH--QISK-HSHQHLKLVELQGFNGRE-IDFELAFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 332 p~L~~L~i~~~~~~~~~~~~~~--~~~~-~~~~~L~~v~i~~~~g~~-~e~~l~~~ll~~a~~Le~m~i~~~~ 400 (431)
++|++|++.... ....+. ++.. ..+++|+.+.+.+-.-+. ....+.+.+..+.+.|+++.+....
T Consensus 256 ~~L~~L~L~~n~----l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 256 SRLRTLWIWECG----ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp CCCCEEECTTSC----CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCceEEECcCCC----CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 667766664321 010000 0111 124567777666532211 1123333333444677777666554
No 13
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.37 E-value=4.1e-06 Score=79.37 Aligned_cols=168 Identities=17% Similarity=0.242 Sum_probs=99.9
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 238 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 238 (431)
++|++|.|.+..+++-. ...+..+++|+.|.+.++. ++.+. .-..+++|+.|.+.++. +..+.- ..++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence 67888888877655321 1135678888888888774 33221 12245778888887765 333321 2478888
Q ss_pred EEEeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccC---CCccEEE
Q 014064 239 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREF---PKLMNLN 310 (431)
Q Consensus 239 L~~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~---~~L~~L~ 310 (431)
|++.+..+. ..+..+++|+.+.+..+...... ....+..+++|+.|.++... +.. ..+..+ ++|++|.
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRKDFAGLTFLEELEIDASD-LQS-YEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEETT-CCE-ECTTTTTTCSEEEEEE
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--CHHHccCCCCCCEEECCCCC-cCc-cCHHHHhccccCCeec
Confidence 888776432 13567888998888865321110 01345678899999998776 321 123334 4555555
Q ss_pred EEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064 311 ISFTAANQETLLGLSFIMKACPFLEKLVLQIWN 343 (431)
Q Consensus 311 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 343 (431)
+..+ ..... ...++..+++|++|++....
T Consensus 205 l~~n--~l~~~--~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 205 LHMK--QHILL--LEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EECS--CSTTH--HHHHHHHTTTEEEEEEESCB
T ss_pred CCCC--ccccc--hhhhhhhcccccEEECCCCc
Confidence 5432 22222 23466779999999997653
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.36 E-value=1.5e-06 Score=85.79 Aligned_cols=210 Identities=13% Similarity=0.109 Sum_probs=104.0
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 238 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 238 (431)
+.++++|++|.|.++.+.+-.- +..+++|+.|.+.+|.. +.+.....+++|++|.+.+|. +..+. -..++|+.
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~ 160 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ 160 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCC-CCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence 3455666666666655543211 55666666666666532 211112334566666666553 11111 11355666
Q ss_pred EEEeceeee-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064 239 FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 317 (431)
Q Consensus 239 L~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (431)
|.+.+.... ..+..+++|+.+.+..+..... ..+..+++|+.|.++.+. +........+++|++|.+..+.-
T Consensus 161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l- 233 (466)
T 1o6v_A 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL- 233 (466)
T ss_dssp EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC-
T ss_pred eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc-
Confidence 665432111 1244566666666654332211 224566677777776555 22211122256677766644311
Q ss_pred cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK 397 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~ 397 (431)
... ..+..+|+|++|++....-. + . ..-..+.+|+.+.+.+-.-.... . +...+.|+++.+.
T Consensus 234 -~~~----~~l~~l~~L~~L~l~~n~l~---~---~-~~~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 -KDI----GTLASLTNLTDLDLANNQIS---N---L-APLSGLTKLTELKLGANQISNIS-P-----LAGLTALTNLELN 295 (466)
T ss_dssp -CCC----GGGGGCTTCSEEECCSSCCC---C---C-GGGTTCTTCSEEECCSSCCCCCG-G-----GTTCTTCSEEECC
T ss_pred -ccc----hhhhcCCCCCEEECCCCccc---c---c-hhhhcCCCCCEEECCCCccCccc-c-----ccCCCccCeEEcC
Confidence 111 13456777777777543211 0 0 11223567888888764322111 0 5678888888887
Q ss_pred eCC
Q 014064 398 PSG 400 (431)
Q Consensus 398 ~~~ 400 (431)
...
T Consensus 296 ~n~ 298 (466)
T 1o6v_A 296 ENQ 298 (466)
T ss_dssp SSC
T ss_pred CCc
Confidence 654
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.32 E-value=1.3e-07 Score=89.03 Aligned_cols=220 Identities=16% Similarity=0.167 Sum_probs=138.6
Q ss_pred HHHHHHhcCCCCeeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014064 88 VNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSL 167 (431)
Q Consensus 88 v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L 167 (431)
+...+.......+..+.+....-..-...+. .-.+++.|++...... .+|..+.++++|
T Consensus 71 ~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~------~l~~L~~L~L~~n~l~---------------~lp~~~~~l~~L 129 (328)
T 4fcg_A 71 TADLLEDATQPGRVALELRSVPLPQFPDQAF------RLSHLQHMTIDAAGLM---------------ELPDTMQQFAGL 129 (328)
T ss_dssp HHHHHHHHTSTTCCEEEEESSCCSSCCSCGG------GGTTCSEEEEESSCCC---------------CCCSCGGGGTTC
T ss_pred hHHHHhcccccceeEEEccCCCchhcChhhh------hCCCCCEEECCCCCcc---------------chhHHHhccCCC
Confidence 3334433334458888875432111111111 1237888888765321 244456788999
Q ss_pred CEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee----------cCCCCcceEEeeccCCcceEE---EeCC
Q 014064 168 RSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV----------GSSIPLKCLDIQFCYSIKEIE---ISAP 234 (431)
Q Consensus 168 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~----------~~~~~L~~L~l~~c~~l~~i~---i~ap 234 (431)
++|.|.+..+. .+..-+..+++|+.|.|.+|...+.+... ..+++|+.|.+.++. +..+. -..+
T Consensus 130 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~ 206 (328)
T 4fcg_A 130 ETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQ 206 (328)
T ss_dssp SEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCT
T ss_pred CEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCC
Confidence 99999999876 34445788999999999998655433111 125899999999886 33331 1357
Q ss_pred ceeEEEEeceeee---eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccE
Q 014064 235 NLLSFKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN 308 (431)
Q Consensus 235 ~L~~L~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~ 308 (431)
+|++|++.+.... -.++.+++|+.+.+..+...+. +...+..+++|+.|.++.+. .. ..+|.. +++|++
T Consensus 207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~---~p~~~~~l~~L~~L~L~~n~-~~-~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCS-NL-LTLPLDIHRLTQLEK 281 (328)
T ss_dssp TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB---CCCCTTCCCCCCEEECTTCT-TC-CBCCTTGGGCTTCCE
T ss_pred CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh---hHHHhcCCCCCCEEECCCCC-ch-hhcchhhhcCCCCCE
Confidence 8999999887542 2466788999998885443321 11345788999999998865 11 223333 677888
Q ss_pred EEEEEeecCcccHHHHHHHHhhCCCcceEEEE
Q 014064 309 LNISFTAANQETLLGLSFIMKACPFLEKLVLQ 340 (431)
Q Consensus 309 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~ 340 (431)
|.|+.+.. ...+...+.++|+|+.+.+.
T Consensus 282 L~L~~n~~----~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 282 LDLRGCVN----LSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EECTTCTT----CCCCCGGGGGSCTTCEEECC
T ss_pred EeCCCCCc----hhhccHHHhhccCceEEeCC
Confidence 87754311 11234567889999998874
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.31 E-value=6.4e-07 Score=83.37 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=105.1
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 238 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 238 (431)
+..+++|++|.|.++.+.+-.- +..+++|+.|.|.++. ++.+.....+++|+.|.+.+|. +..+. -..++|+.
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence 4577888888888887765322 7788888888888875 3333223355788888888775 33221 12477888
Q ss_pred EEEeceeeee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064 239 FKYIGQDINL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA 316 (431)
Q Consensus 239 L~~~~~~~~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 316 (431)
|.+.+..... .+..+++|+.+.+..+..... ..+..+++|+.|.++... +........+++|++|.++.+.-
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQI 207 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCC-----hhhcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCcc
Confidence 8887764421 255677888888775433221 125778888888887776 33222123377888888754322
Q ss_pred CcccHHHHHHHHhhCCCcceEEEEeec
Q 014064 317 NQETLLGLSFIMKACPFLEKLVLQIWN 343 (431)
Q Consensus 317 ~~~~~~~l~~ll~~~p~L~~L~i~~~~ 343 (431)
.... . +..+|+|+.|++....
T Consensus 208 --~~~~---~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 --SDVS---P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp --CBCG---G-GTTCTTCCEEEEEEEE
T ss_pred --Cccc---c-ccCCCCCCEEEccCCe
Confidence 1221 1 6788999999887754
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.30 E-value=5.1e-07 Score=88.85 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=112.2
Q ss_pred CCCEEEEeeEEEcch---hHHHHHhcCCccceeeeccCCCCcee---e----eecCCCCcceEEeeccCCcceEE-----
Q 014064 166 SLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLSL---K----VVGSSIPLKCLDIQFCYSIKEIE----- 230 (431)
Q Consensus 166 ~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~l---~----i~~~~~~L~~L~l~~c~~l~~i~----- 230 (431)
+|++|.|.++.+++. .+...+..|++|++|.|.++.. +.. . +....++|++|.+.+|. +....
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence 799999999998864 4666788999999999999863 211 0 11123579999999885 22110
Q ss_pred ---EeCCceeEEEEeceeeee----ec-----CCCCCceeEEEEeecCcch-hhHHHhhhccCCCceEEEeeeceeeecc
Q 014064 231 ---ISAPNLLSFKYIGQDINL----HV-----GSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLELDGCNEVFAQ 297 (431)
Q Consensus 231 ---i~ap~L~~L~~~~~~~~~----~~-----~~~~~L~~l~i~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 297 (431)
-..|+|++|++.+..+.. .+ ...++|+.+.+..+..... ...+...+..+++|+.|.++.+. +...
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~ 242 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDV 242 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence 124899999998764321 11 1355888888875543321 12233566788999999998776 3322
Q ss_pred c-------ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 298 F-------SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 298 ~-------~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
. +....++|++|.+..+.-.......+...+..+|+|++|++...
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1 11125788888885542222223336677888999999988653
No 18
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.28 E-value=6.6e-08 Score=91.06 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=87.7
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce--e-eeecCCCCcceEEeeccCCcceE-----EEeC
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS--L-KVVGSSIPLKCLDIQFCYSIKEI-----EISA 233 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~--l-~i~~~~~~L~~L~l~~c~~l~~i-----~i~a 233 (431)
.++++|++|.|.++.+++.... .++.||+|+.|.|.+|..++. + .+...+++|+.|.+.+|..+... .-..
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 3556666666666655444333 345566666666666643332 1 11223466666666666323221 1124
Q ss_pred C-ceeEEEEecee--e-----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc--cccC
Q 014064 234 P-NLLSFKYIGQD--I-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREF 303 (431)
Q Consensus 234 p-~L~~L~~~~~~--~-----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~ 303 (431)
| +|++|++.++. . +..+..+++|+.+.+..+.... +.....+..+++|+.|.++.+..+....+ ...+
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 5 66666666542 1 1123456777777766443211 11113346678888888877742322221 1227
Q ss_pred CCccEEEEEEeecCcccHHHHHHHHhhCCCcc
Q 014064 304 PKLMNLNISFTAANQETLLGLSFIMKACPFLE 335 (431)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~ 335 (431)
++|++|.+..+ .+...+..+.+.+|.|+
T Consensus 272 ~~L~~L~l~~~----i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 272 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred CCCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence 78888887543 22223445556677765
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.27 E-value=6.7e-06 Score=82.74 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=122.1
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEE---E-eCCceeE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS 238 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~---i-~ap~L~~ 238 (431)
++|++|.|.+..+++-. ...+.++++|+.|.+.++.. +.+. .-..+++|+.|.++++. +..+. + ..++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence 67788887777654321 11256777888888877742 2221 11244677777777765 22221 1 2467888
Q ss_pred EEEeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccC---CCccEEE
Q 014064 239 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREF---PKLMNLN 310 (431)
Q Consensus 239 L~~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~---~~L~~L~ 310 (431)
|++++.... ..++.+++|+.+.+..+....... ...+..+++|+.|.+.... +.. ..+..+ ++|++|.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALS-LRN-YQSQSLKSIRDIHHLT 178 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCE-ECTTTTTTCSEEEEEE
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCc-ccc-cChhhhhccccCceEe
Confidence 887766432 246678889988888654221110 0235678899999998776 322 233334 4455555
Q ss_pred EEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcc
Q 014064 311 ISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATM 390 (431)
Q Consensus 311 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~ 390 (431)
+... ..... ...++..+++|+.|++....-.... ....+..-...+|+.+.+.+-.-......-+...+.+.+.
T Consensus 179 l~~n--~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 179 LHLS--ESAFL--LEIFADILSSVRYLELRDTNLARFQ--FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EECS--BSTTH--HHHHHHSTTTBSEEEEESCBCTTCC--CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred cccC--ccccc--chhhHhhcccccEEEccCCcccccc--ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 5433 22222 2345677999999999775321100 0001112235678888877654333333333334456667
Q ss_pred cccEEEEe
Q 014064 391 LEKMIIKP 398 (431)
Q Consensus 391 Le~m~i~~ 398 (431)
|+.+.+..
T Consensus 253 L~~l~l~~ 260 (549)
T 2z81_A 253 LSEVEFDD 260 (549)
T ss_dssp CCEEEEES
T ss_pred cccccccc
Confidence 77666653
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.26 E-value=1e-05 Score=81.46 Aligned_cols=179 Identities=13% Similarity=0.125 Sum_probs=121.3
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc--eeeeecCCCCcceEEeeccCCcceEEE----e
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL--SLKVVGSSIPLKCLDIQFCYSIKEIEI----S 232 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ 232 (431)
..+.++++|++|.|++..+++. ....+.++++|+.|.+.++.... .......+++|+.|.+.++..+..+.. .
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 4567899999999999987653 23347889999999999885321 112234568999999999875555431 2
Q ss_pred CCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEeeeceeeecc-----ccccc
Q 014064 233 APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQ-----FSQRE 302 (431)
Q Consensus 233 ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~-----~~~~~ 302 (431)
.++|++|++.+.... ..+..+++|+.+.+...... .+. .+...+++|+.|.++... +... .+...
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA----FLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEV 221 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST----THHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCccc----ccchhhHhhcccccEEEccCCc-cccccccccchhhh
Confidence 478999999876442 24566788888888754432 111 345678999999998876 3321 11223
Q ss_pred CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064 303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN 343 (431)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 343 (431)
.++|++|.+....-.......+...+..+++|+.|.+....
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 67899998865432223334456667889999999987643
No 21
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.26 E-value=1.3e-06 Score=86.19 Aligned_cols=210 Identities=15% Similarity=0.154 Sum_probs=137.5
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCC-cceEEEeCCceeEE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS-IKEIEISAPNLLSF 239 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~-l~~i~i~ap~L~~L 239 (431)
+.++++|++|.|.++.+.+-.- +..+++|+.|.+.+|.. ..+.....+++|+.|.+.+... ... --..++|+.|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L 182 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERL 182 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCcccCchh-hccCCCCCEE
Confidence 6789999999999987765322 78899999999998852 2222234568899999865321 111 1134789999
Q ss_pred EEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064 240 KYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 317 (431)
Q Consensus 240 ~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (431)
++.+.... -.+..+++|+.+.+..+..... ..+..+++|+.|.++.+. +........+++|++|.+..+.-
T Consensus 183 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l- 255 (466)
T 1o6v_A 183 DISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQI- 255 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCC-
T ss_pred ECcCCcCCCChhhccCCCCCEEEecCCccccc-----ccccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCcc-
Confidence 99877542 1356788999998885543322 124678999999998876 43322222378899998865422
Q ss_pred cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK 397 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~ 397 (431)
..... +..+++|++|.+....-. . .+.-..+.+|+.+.+.+-.-..-. . +.+.+.|+.+.+.
T Consensus 256 -~~~~~----~~~l~~L~~L~l~~n~l~---~----~~~~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 256 -SNLAP----LSGLTKLTELKLGANQIS---N----ISPLAGLTALTNLELNENQLEDIS-P-----ISNLKNLTYLTLY 317 (466)
T ss_dssp -CCCGG----GTTCTTCSEEECCSSCCC---C----CGGGTTCTTCSEEECCSSCCSCCG-G-----GGGCTTCSEEECC
T ss_pred -ccchh----hhcCCCCCEEECCCCccC---c----cccccCCCccCeEEcCCCcccCch-h-----hcCCCCCCEEECc
Confidence 22221 778999999999654211 1 111234578999988774322211 1 5788999999988
Q ss_pred eCC
Q 014064 398 PSG 400 (431)
Q Consensus 398 ~~~ 400 (431)
...
T Consensus 318 ~n~ 320 (466)
T 1o6v_A 318 FNN 320 (466)
T ss_dssp SSC
T ss_pred CCc
Confidence 765
No 22
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.24 E-value=3.1e-06 Score=79.00 Aligned_cols=243 Identities=13% Similarity=0.110 Sum_probs=145.6
Q ss_pred ccHhHHHHHHhh--cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCcc
Q 014064 115 CNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLL 192 (431)
Q Consensus 115 ~~~~~wi~~~~~--~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L 192 (431)
..+...+..... .++++|++....... ++ |..+.++++|++|.|.+..+++.. . +..+++|
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~---------~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L 82 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQ-----IS---------AADLAPFTKLELLNLSSNVLYETL-D--LESLSTL 82 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCCC-----CC---------HHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTC
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccCc-----CC---------HHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCC
Confidence 345555554433 368888876543221 11 113457899999999988665321 1 6788999
Q ss_pred ceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-eCCceeEEEEeceeee----eecCCCCCceeEEEEeecCc
Q 014064 193 ENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMV 267 (431)
Q Consensus 193 e~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~ 267 (431)
+.|.+.++. ++.+. ..++|+.|.+.++. +..+.. ..++|+.|.+.+..+. ..+..+++|+.+.+..+...
T Consensus 83 ~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 83 RTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 999998884 33222 23789999998876 444433 3588999998877542 24556788888887754333
Q ss_pred chhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccc
Q 014064 268 QKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRR 347 (431)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~ 347 (431)
... ...+...+++|+.|.++... +........+++|++|.++.+.-. . +..-+..+++|+.|++....-.
T Consensus 158 ~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~--~---l~~~~~~l~~L~~L~L~~N~l~-- 227 (317)
T 3o53_A 158 TVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA--F---MGPEFQSAAGVTWISLRNNKLV-- 227 (317)
T ss_dssp EEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC--E---ECGGGGGGTTCSEEECTTSCCC--
T ss_pred ccc--HHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCC--c---chhhhcccCcccEEECcCCccc--
Confidence 210 11444678999999998776 332211112788999888654221 1 1122668899999999654211
Q ss_pred cCCCCcccc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064 348 IGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK 397 (431)
Q Consensus 348 ~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~ 397 (431)
..+. -....+|+.+.+.+-..... .....+...+.|+.+.+.
T Consensus 228 -----~l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 228 -----LIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -----EECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred -----chhhHhhcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence 1111 12346888888876433322 222344556666665543
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.20 E-value=1.1e-06 Score=81.50 Aligned_cols=210 Identities=16% Similarity=0.131 Sum_probs=120.0
Q ss_pred CCCCCCCCEEEEeeEEEcchh-HHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-----EeCC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEV-VEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-----ISAP 234 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-----i~ap 234 (431)
+.++++|++|.|.+..++... ....+.+++.|+.|.|.++...........+++|+.|.+.++. +..+. -..+
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 126 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence 467889999999887665321 1122446889999999887532221212346888888887764 22111 1247
Q ss_pred ceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc---cCCCcc
Q 014064 235 NLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLM 307 (431)
Q Consensus 235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~~L~ 307 (431)
+|++|.+.+.... ..+..+++|+.+.+..+...+. .....+..+++|+.|+++.+. +... .+. .+++|+
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~ 202 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQ-LEQL-SPTAFNSLSSLQ 202 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCC-cCCc-CHHHhcCCCCCC
Confidence 8888888776443 2345678888887764332210 011445677888888887765 3221 122 256777
Q ss_pred EEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEee--eecCchhHHHHHH
Q 014064 308 NLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQG--FNGREIDFELAFY 383 (431)
Q Consensus 308 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~--~~g~~~e~~l~~~ 383 (431)
+|.++.+.-..... ..+..+++|+.|++....-. +..+. ....++|+.+.+.+ +.+......+.+.
T Consensus 203 ~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 203 VLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM------TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp EEECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCC------BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred EEECCCCccCccCh----hhccCcccCCEeECCCCCCc------ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 77764432111111 12567888998888553211 11111 11225888998877 5566555566665
Q ss_pred HH
Q 014064 384 VF 385 (431)
Q Consensus 384 ll 385 (431)
+-
T Consensus 273 l~ 274 (306)
T 2z66_A 273 IK 274 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.14 E-value=6.6e-07 Score=94.08 Aligned_cols=227 Identities=18% Similarity=0.127 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcchhHH-HHHhcCCccceeeeccCCCCcee--eeecCCCCcceEEeeccCCcceEE---
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYSIKEIE--- 230 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~l~~i~--- 230 (431)
+|..+.++++|++|.|+++.+.+.... .-+..|++|+.|+|.+|...... .+...+++|+.|+++++. +....
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChh
Confidence 344567778888888887777643211 13677788888888776421111 111234667777766654 22111
Q ss_pred ----EeCCceeEEEEeceeee--ee-----------------------cCCCCCceeEEEEeecCcchhhHHHhhhccCC
Q 014064 231 ----ISAPNLLSFKYIGQDIN--LH-----------------------VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLP 281 (431)
Q Consensus 231 ----i~ap~L~~L~~~~~~~~--~~-----------------------~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~ 281 (431)
-..++|++|++.+.... .. ++.+++|+.+.+..+...+ .....+..++
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~ 247 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG---DFSRAISTCT 247 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS---CHHHHTTTCS
T ss_pred hhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC---cccHHHhcCC
Confidence 11244555554443221 11 3344444444444322211 1112334555
Q ss_pred CceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCcc
Q 014064 282 QLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSH 360 (431)
Q Consensus 282 ~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~ 360 (431)
+|+.|.++.+. +........+++|++|.+..+.-.. ... ..+...|++|++|++....-. +..+. -..+
T Consensus 248 ~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~L~~n~l~~-~ip--~~~~~~~~~L~~L~Ls~n~l~------~~~p~~~~~l 317 (768)
T 3rgz_A 248 ELKLLNISSNQ-FVGPIPPLPLKSLQYLSLAENKFTG-EIP--DFLSGACDTLTGLDLSGNHFY------GAVPPFFGSC 317 (768)
T ss_dssp SCCEEECCSSC-CEESCCCCCCTTCCEEECCSSEEEE-SCC--CCSCTTCTTCSEEECCSSEEE------ECCCGGGGGC
T ss_pred CCCEEECCCCc-ccCccCccccCCCCEEECcCCccCC-ccC--HHHHhhcCcCCEEECcCCcCC------CccchHHhcC
Confidence 55555555444 2211111124555555553321100 000 012233566666666432110 01111 1235
Q ss_pred CCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064 361 QHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 361 ~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 400 (431)
++|+.+.+.+-.-.. .+....+.+.+.|+++.+....
T Consensus 318 ~~L~~L~L~~n~l~~---~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 318 SLLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp TTCCEEECCSSEEEE---ECCHHHHTTCTTCCEEECCSSE
T ss_pred CCccEEECCCCcccC---cCCHHHHhcCCCCCEEeCcCCc
Confidence 678888877632110 0111235678889998887553
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.13 E-value=1.7e-06 Score=79.44 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=33.2
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~ 224 (431)
+..+++|++|.|.+..+++-. ...+.+++.|+.|.+.++..++.+. ....+++|+.|.+.++.
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence 456667777777666543211 1224556677777776664333221 11234566666666554
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.12 E-value=7e-06 Score=81.12 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=79.9
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAP 234 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap 234 (431)
.+.++++|++|.|.+..++.-. ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++. +..+.. ..+
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 152 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN 152 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCT
T ss_pred hhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCC
Confidence 3455666666666665443211 112455666666666665422110 011234566666665543 222211 135
Q ss_pred ceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCcc
Q 014064 235 NLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM 307 (431)
Q Consensus 235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~ 307 (431)
+|+.|.+.+..+. ..+..+++|+.+.+..+...... ...+..+++|+.|.++.+.. . ..++.. ..+|+
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~~~~-~-~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR---DYSFKRLYRLKVLEISHWPY-L-DTMTPNCLYGLNLT 227 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC---TTCSCSCTTCCEEEEECCTT-C-CEECTTTTTTCCCS
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC---hhhcccCcccceeeCCCCcc-c-cccCcccccCcccc
Confidence 6666666655331 12445666666666543222100 02335566666666655431 1 111111 23666
Q ss_pred EEEEEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064 308 NLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 341 (431)
Q Consensus 308 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 341 (431)
+|.+..+.-. .. -...+..+++|+.|++..
T Consensus 228 ~L~l~~n~l~--~~--~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 228 SLSITHCNLT--AV--PYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EEEEESSCCC--SC--CHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccc--cc--CHHHhcCccccCeeECCC
Confidence 6666543111 11 113456677777777654
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.11 E-value=2.6e-06 Score=79.25 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=122.0
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-E-eCCceeEE
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSF 239 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i-~ap~L~~L 239 (431)
..+++|++|.+.++.+.+ +. -+..+++|+.|.|.+|... .+.....+++|+.|.+.++. +..+. + ..++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCC-CChhHccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence 357899999999887764 22 2678999999999998532 22223456899999999886 33332 1 24789999
Q ss_pred EEeceeeee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064 240 KYIGQDINL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 317 (431)
Q Consensus 240 ~~~~~~~~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (431)
.+.+..+.. .+..+++|+.+.+..+..... ..+..+++|+.|.++.+. +........+++|+.|.++.+.-
T Consensus 113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l- 185 (308)
T 1h6u_A 113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKI- 185 (308)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCcC-----ccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCcc-
Confidence 988775421 366788999988885543321 225788899999998776 43322223367888888755322
Q ss_pred cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeee
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN 372 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~ 372 (431)
..... +..+|+|++|++....-. . .+.-..+.+|+.+.+.+-.
T Consensus 186 -~~~~~----l~~l~~L~~L~L~~N~l~---~----~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 186 -SDISP----LASLPNLIEVHLKNNQIS---D----VSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -CCCGG----GGGCTTCCEEECTTSCCC---B----CGGGTTCTTCCEEEEEEEE
T ss_pred -CcChh----hcCCCCCCEEEccCCccC---c----cccccCCCCCCEEEccCCe
Confidence 22221 678999999998553211 1 1112345778888887743
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.09 E-value=2.3e-06 Score=84.93 Aligned_cols=210 Identities=15% Similarity=0.146 Sum_probs=131.9
Q ss_pred CceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee
Q 014064 128 NVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK 207 (431)
Q Consensus 128 ~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~ 207 (431)
++++|++....... + .|..+.++++|++|.|+++.+++.. . +..+++|+.|.|.+|. ++.+.
T Consensus 35 ~L~~L~Ls~n~l~~-----~---------~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~ 96 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-----I---------SAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL 96 (487)
T ss_dssp GCCEEECCSSCCCC-----C---------CGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE
T ss_pred CccEEEeeCCcCCC-----C---------CHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC
Confidence 67777776543221 1 1224568899999999988765421 1 7789999999999884 33322
Q ss_pred eecCCCCcceEEeeccCCcceEE-EeCCceeEEEEeceee----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCC
Q 014064 208 VVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQ 282 (431)
Q Consensus 208 i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L~~~~~~~----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~ 282 (431)
..++|+.|.+.+|. +..+. -..|+|+.|.+.+..+ +..++.+++|+.+.+..+...+.. ...+...+++
T Consensus 97 ---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~ 170 (487)
T 3oja_A 97 ---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDT 170 (487)
T ss_dssp ---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGGGGGTTT
T ss_pred ---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHHHhhhCCc
Confidence 22789999999887 44333 2358899999987754 234567888998888755433210 1144457899
Q ss_pred ceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccC
Q 014064 283 LKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQ 361 (431)
Q Consensus 283 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~ 361 (431)
|+.|.++.+. +........+++|+.|.|+.+.-. . +..-+..+|+|+.|++....-.. .+. -...+
T Consensus 171 L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~--~---~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~l~~l~ 237 (487)
T 3oja_A 171 LEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA--F---MGPEFQSAAGVTWISLRNNKLVL-------IEKALRFSQ 237 (487)
T ss_dssp CCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC--E---ECGGGGGGTTCSEEECTTSCCCE-------ECTTCCCCT
T ss_pred ccEEecCCCc-cccccccccCCCCCEEECCCCCCC--C---CCHhHcCCCCccEEEecCCcCcc-------cchhhccCC
Confidence 9999998877 432211112778899888654222 1 11226688999999996542111 111 12346
Q ss_pred CccEEEEeeeecC
Q 014064 362 HLKLVELQGFNGR 374 (431)
Q Consensus 362 ~L~~v~i~~~~g~ 374 (431)
+|+.+.+.+-...
T Consensus 238 ~L~~L~l~~N~l~ 250 (487)
T 3oja_A 238 NLEHFDLRGNGFH 250 (487)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEcCCCCCc
Confidence 7888887764444
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.08 E-value=2.6e-06 Score=83.37 Aligned_cols=208 Identities=14% Similarity=0.084 Sum_probs=114.4
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----e
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----S 232 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ 232 (431)
..+.++++|++|.|.+..+.+-.. ..+.++++|+.|.|.++.- +.+. .-..+++|+.|.+.++. +..+.- .
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 158 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR 158 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT
T ss_pred HHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcC-CeeCHhHhhccccCceeeCCCCc-ccccCHHHhhh
Confidence 356678888888888776543211 2356788888888887742 2221 11244778888887765 443322 2
Q ss_pred CCceeEEEEece-eee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CC
Q 014064 233 APNLLSFKYIGQ-DIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FP 304 (431)
Q Consensus 233 ap~L~~L~~~~~-~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~ 304 (431)
.++|+.|++.+. ... ..+.++++|+.+.+..+..... .-+..+++|+.|+++... +... .+.. ++
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~ 231 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNH-LSAI-RPGSFQGLM 231 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----CCCTTCSSCCEEECTTSC-CCEE-CTTTTTTCT
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----cccCCCcccCEEECCCCc-cCcc-ChhhhccCc
Confidence 477888887763 111 2355677777777764432211 124567788888887665 3211 1222 45
Q ss_pred CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEee--eecCchhHHHH
Q 014064 305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELA 381 (431)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~ 381 (431)
+|++|.+..+.-. .. ....+..+++|+.|++....-. . .... -....+|+.+.+.+ +........+.
T Consensus 232 ~L~~L~L~~n~l~--~~--~~~~~~~l~~L~~L~L~~N~l~---~---~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~ 301 (440)
T 3zyj_A 232 HLQKLWMIQSQIQ--VI--ERNAFDNLQSLVEINLAHNNLT---L---LPHDLFTPLHHLERIHLHHNPWNCNCDILWLS 301 (440)
T ss_dssp TCCEEECTTCCCC--EE--CTTSSTTCTTCCEEECTTSCCC---C---CCTTTTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred cCCEEECCCCcee--EE--ChhhhcCCCCCCEEECCCCCCC---c---cChhHhccccCCCEEEcCCCCccCCCCchHHH
Confidence 6666665332111 11 1134567788888888543211 0 0001 12347888888877 44555444454
Q ss_pred HHHHh
Q 014064 382 FYVFE 386 (431)
Q Consensus 382 ~~ll~ 386 (431)
..+-.
T Consensus 302 ~~~~~ 306 (440)
T 3zyj_A 302 WWIKD 306 (440)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44433
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.07 E-value=3.6e-06 Score=82.72 Aligned_cols=206 Identities=14% Similarity=0.042 Sum_probs=112.0
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----e
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----S 232 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ 232 (431)
..+.++++|++|.|.+..+++-. ...+.++++|+.|.|.++.. +.+. .-..+++|+.|.++++. +..+.- .
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 169 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR 169 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTT
T ss_pred HHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCCC-cceeCHhHHhc
Confidence 35567788888888877654321 12356778888888877642 2211 11234678888877765 443322 2
Q ss_pred CCceeEEEEece-eee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc---cCC
Q 014064 233 APNLLSFKYIGQ-DIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFP 304 (431)
Q Consensus 233 ap~L~~L~~~~~-~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~ 304 (431)
.|+|+.|++.+. ... ..+.++++|+.+.+..+..... .-+..+++|+.|+++... +... .+. .++
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~ 242 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNH-FPEI-RPGSFHGLS 242 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSC-CSEE-CGGGGTTCT
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCc-Cccc-CcccccCcc
Confidence 467777777652 111 1345677777777664432211 224566788888887665 2211 111 255
Q ss_pred CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEee--eecCchhHHH
Q 014064 305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQG--FNGREIDFEL 380 (431)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~--~~g~~~e~~l 380 (431)
+|+.|.+..+.-. .. ....+..+++|+.|++....-. ..+. -....+|+.+.+.+ +........+
T Consensus 243 ~L~~L~L~~n~l~--~~--~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 243 SLKKLWVMNSQVS--LI--ERNAFDGLASLVELNLAHNNLS-------SLPHDLFTPLRYLVELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp TCCEEECTTSCCC--EE--CTTTTTTCTTCCEEECCSSCCS-------CCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred CCCEEEeCCCcCc--eE--CHHHhcCCCCCCEEECCCCcCC-------ccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence 6666666432111 11 1134567788888888653211 0111 12346788888877 4455544445
Q ss_pred HHHHH
Q 014064 381 AFYVF 385 (431)
Q Consensus 381 ~~~ll 385 (431)
...+-
T Consensus 312 ~~~l~ 316 (452)
T 3zyi_A 312 AWWLR 316 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 31
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.06 E-value=2.6e-06 Score=73.60 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=9.7
Q ss_pred HHhhCCCcceEEEEe
Q 014064 327 IMKACPFLEKLVLQI 341 (431)
Q Consensus 327 ll~~~p~L~~L~i~~ 341 (431)
.+..+|+|++|++..
T Consensus 176 ~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TGGGCSSCCEEEECB
T ss_pred HhccCCCCCEEEeeC
Confidence 355667777777754
No 32
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.03 E-value=5.5e-06 Score=77.30 Aligned_cols=212 Identities=13% Similarity=0.092 Sum_probs=137.1
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 242 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 242 (431)
.+++|++|.|.+..+++- ....+..+++|+.|.|.++....... ...+++|+.|.++++. +..+. ..|+|+.|.+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence 568999999999987653 23447899999999999986433333 3456899999999886 55554 34899999998
Q ss_pred ceee-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecc---cccccCCCccEEEEEEeecCc
Q 014064 243 GQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAANQ 318 (431)
Q Consensus 243 ~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~ 318 (431)
+..+ ......+++|+.+.+..+..... ....+..+++|+.|+++... +... .+...+++|++|.++.+.-.
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~- 182 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITML---RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY- 182 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSG---GGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCc---cchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCc-
Confidence 8755 34455688899998875543321 01234678899999998776 3322 22223678888888543211
Q ss_pred ccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064 319 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK 397 (431)
Q Consensus 319 ~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~ 397 (431)
.... ...+++|++|++....-.. .+. -....+|+.+.+.+-.-.. +. .-+.+.+.|+.+.+.
T Consensus 183 -~~~~----~~~l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~L~~N~l~~----l~-~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 183 -DVKG----QVVFAKLKTLDLSSNKLAF-------MGPEFQSAAGVTWISLRNNKLVL----IE-KALRFSQNLEHFDLR 245 (317)
T ss_dssp -EEEC----CCCCTTCCEEECCSSCCCE-------ECGGGGGGTTCSEEECTTSCCCE----EC-TTCCCCTTCCEEECT
T ss_pred -cccc----ccccccCCEEECCCCcCCc-------chhhhcccCcccEEECcCCcccc----hh-hHhhcCCCCCEEEcc
Confidence 1111 1147999999996642111 111 1234678888776632221 10 113567889998887
Q ss_pred eCC
Q 014064 398 PSG 400 (431)
Q Consensus 398 ~~~ 400 (431)
...
T Consensus 246 ~N~ 248 (317)
T 3o53_A 246 GNG 248 (317)
T ss_dssp TCC
T ss_pred CCC
Confidence 654
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.03 E-value=9.4e-07 Score=92.93 Aligned_cols=213 Identities=18% Similarity=0.184 Sum_probs=137.7
Q ss_pred CCCCCCCEEEEeeEEEcchhHH--HHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-E-eCCcee
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVE--FFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLL 237 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i-~ap~L~ 237 (431)
.++++|++|.|.++.+++.... ..+.+|+.|+.|.+.+|...+...+ ..+++|+.|.+.+|.....+. + ..++|+
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 226 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence 6889999999998887654333 2378899999999998853332222 466899999999886322121 2 358999
Q ss_pred EEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc----CCCccEE
Q 014064 238 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE----FPKLMNL 309 (431)
Q Consensus 238 ~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~----~~~L~~L 309 (431)
+|++.+.... ..+..+++|+.+.+..+...+.. .. ..+++|+.|.+..+. +.. .+|.. +++|++|
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~-~~l~~L~~L~L~~n~-l~~-~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PP-LPLKSLQYLSLAENK-FTG-EIPDFLSGACDTLTGL 299 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESC----CC-CCCTTCCEEECCSSE-EEE-SCCCCSCTTCTTCSEE
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCcc----Cc-cccCCCCEEECcCCc-cCC-ccCHHHHhhcCcCCEE
Confidence 9999887542 35678999999998865433211 11 278899999998877 331 22332 4789999
Q ss_pred EEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEeeee--cC-chhHHHHHHH
Q 014064 310 NISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFN--GR-EIDFELAFYV 384 (431)
Q Consensus 310 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~--g~-~~e~~l~~~l 384 (431)
.+..+.-.. .+...+..+++|++|++....-. +..+. -....+|+.+.+.+-. |. ...
T Consensus 300 ~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~------- 362 (768)
T 3rgz_A 300 DLSGNHFYG----AVPPFFGSCSLLESLALSSNNFS------GELPMDTLLKMRGLKVLDLSFNEFSGELPES------- 362 (768)
T ss_dssp ECCSSEEEE----CCCGGGGGCTTCCEEECCSSEEE------EECCHHHHTTCTTCCEEECCSSEEEECCCTT-------
T ss_pred ECcCCcCCC----ccchHHhcCCCccEEECCCCccc------CcCCHHHHhcCCCCCEEeCcCCccCccccHH-------
Confidence 885532211 12345678999999999654211 11121 1345789999887743 22 111
Q ss_pred HhcCc-ccccEEEEeC
Q 014064 385 FENAT-MLEKMIIKPS 399 (431)
Q Consensus 385 l~~a~-~Le~m~i~~~ 399 (431)
+.+.+ .|+++.+...
T Consensus 363 l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSN 378 (768)
T ss_dssp HHHHTTTCSEEECCSS
T ss_pred HHhhhcCCcEEEccCC
Confidence 22334 8998888654
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.01 E-value=3.6e-06 Score=83.53 Aligned_cols=211 Identities=13% Similarity=0.095 Sum_probs=133.7
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY 241 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 241 (431)
..+++|++|.|.+..+++-. ...+..+++|+.|.|.+|....... ...+++|+.|.++++. +..+.. .|+|+.|.+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L 106 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA 106 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence 35679999999999876531 2346889999999999986433333 3456899999999886 555543 389999999
Q ss_pred eceee-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecc---cccccCCCccEEEEEEeecC
Q 014064 242 IGQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAAN 317 (431)
Q Consensus 242 ~~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 317 (431)
.+..+ ......+++|+.+.+..+...+. ....+..+++|+.|+++... +... .+...+++|+.|.|+.+.-.
T Consensus 107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCSRGQGKKNIYLANNKITML---RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEECCCSSCEEEECCSSCCCSG---GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCccccCCCCEEECCCCCCCCC---CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccc
Confidence 98755 34445678999998885543321 11334678999999998776 3322 22223678888888554221
Q ss_pred cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeee--cCchhHHHHHHHHhcCcccccEE
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN--GREIDFELAFYVFENATMLEKMI 395 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~--g~~~e~~l~~~ll~~a~~Le~m~ 395 (431)
.... ...+|+|+.|++....-.. ..+.-..+.+|+.+.+.+-. +... .+...+.|+.+.
T Consensus 183 --~~~~----~~~l~~L~~L~Ls~N~l~~------~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~l~~l~~L~~L~ 243 (487)
T 3oja_A 183 --DVKG----QVVFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNKLVLIEK-------ALRFSQNLEHFD 243 (487)
T ss_dssp --EEEC----CCCCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSCCCEECT-------TCCCCTTCCEEE
T ss_pred --cccc----cccCCCCCEEECCCCCCCC------CCHhHcCCCCccEEEecCCcCcccch-------hhccCCCCCEEE
Confidence 1111 1258999999996642111 10111234677777776522 1111 134566777776
Q ss_pred EEeC
Q 014064 396 IKPS 399 (431)
Q Consensus 396 i~~~ 399 (431)
+...
T Consensus 244 l~~N 247 (487)
T 3oja_A 244 LRGN 247 (487)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 6544
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.01 E-value=1e-05 Score=81.75 Aligned_cols=99 Identities=13% Similarity=0.009 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-----
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----- 231 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----- 231 (431)
+|..+..+ +|++|.+.++.+.. +.. ..++.|+.|.+.++........ ..+++|+.|.+.++. +..+..
T Consensus 297 l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~ 369 (570)
T 2z63_A 297 VKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSD 369 (570)
T ss_dssp CCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHH
T ss_pred hhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccc
Confidence 45445555 77777777666542 111 3566666666666543322211 234566666665554 222210
Q ss_pred -eCCceeEEEEeceee---eeecCCCCCceeEEEE
Q 014064 232 -SAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFH 262 (431)
Q Consensus 232 -~ap~L~~L~~~~~~~---~~~~~~~~~L~~l~i~ 262 (431)
..++|++|++.+... +..+..+++|+.+.+.
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 404 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred cccCccCEEECCCCccccccccccccCCCCEEEcc
Confidence 135556665554422 1124455555555544
No 36
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.01 E-value=1e-06 Score=84.70 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=113.4
Q ss_pred CCCCCCCEEEEeeEEEcch---hHHHHHhcCCccceeeeccCCCCce--eeeec---CC---------CCcceEEeeccC
Q 014064 162 SGIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLS--LKVVG---SS---------IPLKCLDIQFCY 224 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~--l~i~~---~~---------~~L~~L~l~~c~ 224 (431)
..+++|++|.|+++.+++. .+...+..|++|+.|.|.+|..-.. ..+.. .+ ++|++|.+.+|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4678899999988888764 3555678889999999988853110 01111 11 678888888776
Q ss_pred Cc-ceEE------EeCCceeEEEEeceeee------e---ecCCCCCceeEEEEeecCcch-hhHHHhhhccCCCceEEE
Q 014064 225 SI-KEIE------ISAPNLLSFKYIGQDIN------L---HVGSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLE 287 (431)
Q Consensus 225 ~l-~~i~------i~ap~L~~L~~~~~~~~------~---~~~~~~~L~~l~i~~~~~~~~-~~~~~~~~~~~~~l~~L~ 287 (431)
-. ..+. -..++|++|.+.++.+. + .+..+++|+.+.+..+..... ...+...+..+++|+.|.
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 21 1111 13578888888876443 1 345788899888875543211 122335668889999999
Q ss_pred eeeceeeecc---cccc-----cCCCccEEEEEEeecCcccHHHHHHHH-hhCCCcceEEEEee
Q 014064 288 LDGCNEVFAQ---FSQR-----EFPKLMNLNISFTAANQETLLGLSFIM-KACPFLEKLVLQIW 342 (431)
Q Consensus 288 l~~~~~~~~~---~~~~-----~~~~L~~L~l~~~~~~~~~~~~l~~ll-~~~p~L~~L~i~~~ 342 (431)
++.+. +... .++. .+++|++|.|..+.-.......+...+ .++|+|++|++...
T Consensus 251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 98877 4322 1222 167889988865432212222355555 67899999999654
No 37
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=2.9e-06 Score=80.62 Aligned_cols=79 Identities=22% Similarity=0.217 Sum_probs=52.9
Q ss_pred CCCCCCCEEEEeeEEEc--------chhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCC----cceE
Q 014064 162 SGIKSLRSLTLCAVNVT--------GEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS----IKEI 229 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~----l~~i 229 (431)
..||+|+.|.+..+... ..++..++..+|+|++|.|.++.++....+ .+++|++|.+..|.- +..+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCCCChHHHHHH
Confidence 46789999998765322 224778899999999999998854432222 248899999887651 1111
Q ss_pred E-EeCCceeEEEEe
Q 014064 230 E-ISAPNLLSFKYI 242 (431)
Q Consensus 230 ~-i~ap~L~~L~~~ 242 (431)
. ...|+|++|++.
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 1 145778877764
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.98 E-value=2e-06 Score=84.54 Aligned_cols=15 Identities=33% Similarity=0.277 Sum_probs=7.7
Q ss_pred ccCCCceEEEeeece
Q 014064 278 SYLPQLKTLELDGCN 292 (431)
Q Consensus 278 ~~~~~l~~L~l~~~~ 292 (431)
..+++|+.|+++...
T Consensus 263 ~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 263 DGLASLVELNLAHNN 277 (452)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc
Confidence 445555555554443
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.97 E-value=1.8e-06 Score=88.10 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE------EeC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE------ISA 233 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~------i~a 233 (431)
.+..+++|++|.+.++.+.. +..+ .+|.|+.|.+.++.......+ ..+++|+.|.+.++. +..+. ...
T Consensus 302 ~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNA-LSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSC-EEEEEECCHHHHCC
T ss_pred hccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCc-cCCCcchhhhhccC
Confidence 44556667777776665522 2222 666777777766644433322 234666666666554 22221 123
Q ss_pred CceeEEEEeceeee---eecCCCCCceeEEEE
Q 014064 234 PNLLSFKYIGQDIN---LHVGSLPQLVDVVFH 262 (431)
Q Consensus 234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~i~ 262 (431)
++|++|++.+.... ..+..+++|+.+.+.
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~ 407 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECC
Confidence 56666666554321 234455556655554
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.95 E-value=5.9e-06 Score=75.72 Aligned_cols=205 Identities=13% Similarity=0.053 Sum_probs=118.9
Q ss_pred CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064 164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL 237 (431)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~ 237 (431)
.++|++|.|.+..+++-. ...+..+++|+.|.|.++. ++.+. .-..+++|+.|.+.++..+..+.. ..++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 479999999988765421 1236789999999999884 33321 123458899999998864444321 247899
Q ss_pred EEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEE
Q 014064 238 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNI 311 (431)
Q Consensus 238 ~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l 311 (431)
+|++.+..+. ..+..+++|+.+.+..+..... ....+..+++|+.|.++... +.... ....+++|++|.+
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc---CHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEEC
Confidence 9988876442 2255677888887774432211 00335677888888887765 32111 0112566777766
Q ss_pred EEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEee--eecCchhHHHHHHH
Q 014064 312 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELAFYV 384 (431)
Q Consensus 312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~~~l 384 (431)
..+.-... ....+..+++|+.|++....-. +..+. -....+|+.+.+.+ +.+......+.+.+
T Consensus 185 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 185 HQNRVAHV----HPHAFRDLGRLMTLYLFANNLS------ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp CSSCCCEE----CTTTTTTCTTCCEEECCSSCCS------CCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CCCccccc----CHhHccCcccccEeeCCCCcCC------cCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 44321111 1234566788888887553211 01001 12346777777766 34444444454443
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.93 E-value=3.4e-06 Score=81.06 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=43.2
Q ss_pred CceeEEEEeceeee-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEE
Q 014064 234 PNLLSFKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLN 310 (431)
Q Consensus 234 p~L~~L~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~ 310 (431)
++|+.|++.+.... +.....++|+.+.+..+...+. ..+..+++|+.|+++... +.... ....+++|++|.
T Consensus 205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEE
T ss_pred CcceEEECCCCeeeeccccccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEE
Confidence 35555555554331 2222345566665554332221 334566667777766554 22110 111145555555
Q ss_pred EEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064 311 ISFTAANQETLLGLSFIMKACPFLEKLVLQI 341 (431)
Q Consensus 311 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 341 (431)
+..+.-. . +......+|+|++|++..
T Consensus 279 L~~n~l~--~---~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 279 ISNNRLV--A---LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCSSCCC--E---EECSSSCCTTCCEEECCS
T ss_pred CCCCcCc--c---cCcccCCCCCCCEEECCC
Confidence 5332111 1 111224456666666644
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.93 E-value=1.7e-06 Score=88.24 Aligned_cols=81 Identities=19% Similarity=0.130 Sum_probs=39.6
Q ss_pred hccCCCceEEEeeeceeeecc-cccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc
Q 014064 277 VSYLPQLKTLELDGCNEVFAQ-FSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI 355 (431)
Q Consensus 277 ~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~ 355 (431)
+..+++|+.|.++++. +... .....+++|+.|.|+.+.-. . +..-+..+|+|+.|++....-. ..
T Consensus 274 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~--~---i~~~~~~l~~L~~L~L~~N~l~---~~----- 339 (597)
T 3oja_B 274 FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL--H---VERNQPQFDRLENLYLDHNSIV---TL----- 339 (597)
T ss_dssp GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC--C---CGGGHHHHTTCSEEECCSSCCC---CC-----
T ss_pred hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC--c---cCcccccCCCCCEEECCCCCCC---Cc-----
Confidence 3456666666665554 2211 11112566666666443211 1 1222355677777777543211 00
Q ss_pred ccCccCCccEEEEeee
Q 014064 356 SKHSHQHLKLVELQGF 371 (431)
Q Consensus 356 ~~~~~~~L~~v~i~~~ 371 (431)
....+.+|+.+.+.+-
T Consensus 340 ~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 340 KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp CCCTTCCCSEEECCSS
T ss_pred ChhhcCCCCEEEeeCC
Confidence 1223467888887763
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.93 E-value=3.6e-06 Score=85.84 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=84.4
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-eCCceeEE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF 239 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L 239 (431)
+..+++|+.|.+.++.+..-. -+..++.|+.|.+.+|.. +.+.-. .+++|+.|.+.++.....+.+ ..|+|++|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 667899999999988775422 467889999999999875 333211 568999999998864444433 35899999
Q ss_pred EEeceeee------eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 240 KYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 240 ~~~~~~~~------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
++.+.... ..+..+++|+.+.+..+..... ...+..+++|+.|.++.+.
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHST 410 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE----CCCCTTCTTCCEEECTTSE
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccc----hhhccCCCCCCeeECCCCc
Confidence 98876442 2356788999988875432210 0234566777777776655
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.93 E-value=5.8e-06 Score=79.48 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=30.9
Q ss_pred CCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 280 LPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 280 ~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
.++|+.|.++... +........+++|++|.++.+.-... ....+..+++|++|.+...
T Consensus 225 ~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 225 NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp CSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECCSS
T ss_pred cccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCc----ChhHccccccCCEEECCCC
Confidence 3567777776655 33222222366777777754321111 1234556778888877553
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.92 E-value=1.4e-05 Score=78.86 Aligned_cols=175 Identities=23% Similarity=0.183 Sum_probs=89.7
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee-eecCCCCcceEEeeccCCcceEEE---eCCc
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIEI---SAPN 235 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i---~ap~ 235 (431)
.+.++++|++|.|.++.+++- ....+..++.|+.|.|.++....... .-..+++|+.|.+.+|..+..+.. ..++
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 455666677777666655432 12335667777777776654221110 112346677777777654443321 1246
Q ss_pred eeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEE
Q 014064 236 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNL 309 (431)
Q Consensus 236 L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L 309 (431)
|++|++.+..+. ..+..+++|+.+.+..+...... ...+..+++|+.|.+.... +.... ....+++|+.|
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE---GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC---TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEE
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC---hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEE
Confidence 777777665332 13456677777776644322100 0334566777777776654 22110 01114566666
Q ss_pred EEEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064 310 NISFTAANQETLLGLSFIMKACPFLEKLVLQIWN 343 (431)
Q Consensus 310 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 343 (431)
.|..+.-. ... ...+..+++|++|++...+
T Consensus 302 ~L~~N~l~--~~~--~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 302 NVSGNQLT--TLE--ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECCSSCCS--CCC--GGGBSCGGGCCEEECCSSC
T ss_pred ECCCCcCc--eeC--HhHcCCCcccCEEEccCCC
Confidence 66433111 111 1344566777777776543
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=1e-06 Score=93.10 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=104.0
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcch----------------hHHHHHh--cCCccceeeeccCCCCceee-eecCCCCcce
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLK-VVGSSIPLKC 217 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~ 217 (431)
+|..+.++++|++|.|.+..++++ .+..-+. .+++|+.|.|.+|...+.+. .-..+++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 677788899999999999888763 1333344 88999999998886443321 1234578889
Q ss_pred EEeeccCCcce--EE----------EeCCceeEEEEeceee---ee--ecCCCCCceeEEEEeecCcchhhHHHhhhccC
Q 014064 218 LDIQFCYSIKE--IE----------ISAPNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYL 280 (431)
Q Consensus 218 L~l~~c~~l~~--i~----------i~ap~L~~L~~~~~~~---~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~ 280 (431)
|.+.++..+.. +. ...|+|+.|.+.+..+ +- .++.+++|+.+.+..+... .+ ..+..+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l----p~~~~L 594 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL----EAFGTN 594 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BC----CCCCTT
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cc----hhhcCC
Confidence 98887752221 10 1235888888877643 22 4567788888877644332 11 134667
Q ss_pred CCceEEEeeeceeeeccccccc---CCC-ccEEEEEEeecCcccHHHHHHHHhhC--CCcceEEEEee
Q 014064 281 PQLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISFTAANQETLLGLSFIMKAC--PFLEKLVLQIW 342 (431)
Q Consensus 281 ~~l~~L~l~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~~~~~~l~~ll~~~--p~L~~L~i~~~ 342 (431)
++|+.|.++... +. .+|.. +++ |+.|.|..+.-. .+...+... ++|+.|++...
T Consensus 595 ~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L~-----~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 595 VKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKLK-----YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp SEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCCC-----SCCSCCCTTCSSCEEEEECCSS
T ss_pred CcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCCC-----cCchhhhccccCCCCEEECcCC
Confidence 788888887766 33 33433 345 666666443211 122233333 34777777553
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.92 E-value=1.1e-05 Score=79.06 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=28.8
Q ss_pred hhccCCCceEEEeeeceeeecccccc---cCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064 276 IVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 341 (431)
Q Consensus 276 ~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 341 (431)
.+..+++|+.|+++.+. +... .+. .+++|++|.++.+.-. .. ....+..+++|++|++..
T Consensus 294 ~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~--~~--~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNE-INKI-DDNAFWGLTHLLKLNLSQNFLG--SI--DSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp TTTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCC--EE--CGGGGTTCTTCCEEECCS
T ss_pred hcccCCCCCEEECCCCc-cccc-ChhHhcCcccCCEEECCCCccC--Cc--ChhHhcCcccCCEEECCC
Confidence 34566677777776554 2211 111 1455566555432111 11 123445666777776654
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.91 E-value=2.3e-06 Score=84.04 Aligned_cols=85 Identities=19% Similarity=0.070 Sum_probs=49.4
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce-ee--eecCCCCcceEEeeccCCcceEE-----
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LK--VVGSSIPLKCLDIQFCYSIKEIE----- 230 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~--i~~~~~~L~~L~l~~c~~l~~i~----- 230 (431)
..+.++++|++|.|.+..+.+. ....+.++++|+.|.|.+|...+. +. .-..+++|+.|.+.++. +..+.
T Consensus 73 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 150 (455)
T 3v47_A 73 NTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFF 150 (455)
T ss_dssp TTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGG
T ss_pred ccccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCccccc
Confidence 3456777788887777654332 122256677888888877753221 11 12245778888887765 22221
Q ss_pred EeCCceeEEEEecee
Q 014064 231 ISAPNLLSFKYIGQD 245 (431)
Q Consensus 231 i~ap~L~~L~~~~~~ 245 (431)
-..++|++|++.+..
T Consensus 151 ~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 151 LNMRRFHVLDLTFNK 165 (455)
T ss_dssp GGCTTCCEEECTTCC
T ss_pred CCCCcccEEeCCCCc
Confidence 134778888777653
No 49
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.91 E-value=1.9e-06 Score=77.45 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064 24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 57 (431)
Q Consensus 24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l 57 (431)
|+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999964
No 50
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=6.5e-06 Score=69.13 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=31.3
Q ss_pred CCCCCCEEEEeeE-EEcchhHHHHHh---cCCccceeeeccCCCCcee--eeecCCCCcceEEeeccCC
Q 014064 163 GIKSLRSLTLCAV-NVTGEVVEFFIH---NCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYS 225 (431)
Q Consensus 163 ~~~~L~~L~L~~~-~~~~~~l~~ll~---~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~ 225 (431)
++++|++|.|.+| .++|..+..+-. .|+.|+.|+|.+|..++.- .....+++|++|.+.+|+.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 4555555555555 355555555443 1455555555555544321 1112345555555555553
No 51
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.89 E-value=8.4e-06 Score=75.09 Aligned_cols=146 Identities=22% Similarity=0.214 Sum_probs=81.9
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCcee
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL 237 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~ 237 (431)
++..+++|++|.|.+..+++-.- +..+++|+.|.+.++.. +.+.-...+++|+.|.+.++. +..+. -..++|+
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~ 137 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE 137 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCC
T ss_pred hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCCc-CCCChhhcCCCCCC
Confidence 35678999999999887765322 78899999999988753 322223355788888887775 22221 0124455
Q ss_pred EEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064 238 SFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 317 (431)
Q Consensus 238 ~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (431)
.|.+.+..+ ... ..+..+++|+.|.++.+. +........+++|++|.++.+.-
T Consensus 138 ~L~l~~n~l--------------------~~~-----~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i- 190 (291)
T 1h6t_A 138 SLYLGNNKI--------------------TDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHI- 190 (291)
T ss_dssp EEECCSSCC--------------------CCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-
T ss_pred EEEccCCcC--------------------Ccc-----hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcC-
Confidence 554444322 110 233556666666666554 32221122255666666543311
Q ss_pred cccHHHHHHHHhhCCCcceEEEEee
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
.+. . -+..+++|+.|++...
T Consensus 191 -~~l---~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 191 -SDL---R-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp -CBC---G-GGTTCTTCSEEEEEEE
T ss_pred -CCC---h-hhccCCCCCEEECcCC
Confidence 111 1 1566777777777654
No 52
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.88 E-value=4.9e-06 Score=75.64 Aligned_cols=37 Identities=22% Similarity=0.591 Sum_probs=34.6
Q ss_pred CCcCCCCCHHHHHHHHhcCChHHHH-HHHHHhhhhhhc
Q 014064 21 EDWFSRFPDDILIHIISGLTLKEAA-RTSVLSSRWKYL 57 (431)
Q Consensus 21 ~D~is~LPd~lL~~Ils~L~~~~~~-r~s~vSrrWr~l 57 (431)
...+..||+|||..||++||.++++ ++++|||+|+.+
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l 85 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL 85 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence 3578899999999999999999999 999999999987
No 53
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.84 E-value=3.9e-06 Score=70.37 Aligned_cols=126 Identities=20% Similarity=0.185 Sum_probs=63.2
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcce-EE--E-eCCceeEEE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE-IE--I-SAPNLLSFK 240 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~-i~--i-~ap~L~~L~ 240 (431)
++|++|.|.++.+++..+...+..+++|+.|.+.+|. ++.+.....+++|+.|.+.++. +.. +. + ..|+|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEe
Confidence 6667777766666543444445666677777776664 2222222344566666666654 211 11 1 145566666
Q ss_pred Eeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 241 YIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 241 ~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
+.+..+. -.+..+++|+.+.+..+.......+....+..+++|+.|++..+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 5554321 123445556666555433322111111344556666666665554
No 54
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.82 E-value=2.1e-05 Score=72.45 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=62.5
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 238 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 238 (431)
+.++++|+.|.|.+..+++- .. +..+++|+.|.+.+|.. +.+.....+++|+.|.++++. +..+. -..++|+.
T Consensus 86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 160 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT 160 (291)
T ss_dssp GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCE
Confidence 57899999999999987662 22 78899999999999853 333223356899999999886 33321 12356666
Q ss_pred EEEeceeeee--ecCCCCCceeEEEE
Q 014064 239 FKYIGQDINL--HVGSLPQLVDVVFH 262 (431)
Q Consensus 239 L~~~~~~~~~--~~~~~~~L~~l~i~ 262 (431)
|++.+..+.. .+..+++|+.+.+.
T Consensus 161 L~L~~N~l~~~~~l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 161 LSLEDNQISDIVPLAGLTKLQNLYLS 186 (291)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred EEccCCccccchhhcCCCccCEEECC
Confidence 6665543210 13344444444444
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.82 E-value=3.9e-06 Score=82.10 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=54.3
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEE--EeCCce
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE--ISAPNL 236 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~--i~ap~L 236 (431)
+.++++|++|.|.+..+..- -...+..+++|+.|.|.+|..+..+.. -..+++|+.|.+.++. +..+. ...++|
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L 209 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKL 209 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSC
T ss_pred hhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCccc
Confidence 44555555555555543321 011234555555555555544433221 1123555555555543 22211 112455
Q ss_pred eEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 237 LSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 237 ~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
+.|++++..+. ..+.++++|+.+.+..+..... ....+..+++|+.|+++...
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI---ERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTSSTTCTTCCEEECTTSC
T ss_pred CEEECCCCccCccChhhhccCccCCEEECCCCceeEE---ChhhhcCCCCCCEEECCCCC
Confidence 55555554321 1234455555555442221110 00223455556666555544
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.82 E-value=3.8e-06 Score=85.64 Aligned_cols=105 Identities=22% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE--
Q 014064 156 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI-- 231 (431)
Q Consensus 156 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i-- 231 (431)
.+|..+.++++|++|.|.++.+.+.. ...+..+|.|+.|.+.++.....+.. ...+++|+.|.+.++. +..+..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 369 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN 369 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence 46777788899999999988776431 23356788888888887753322111 1234677777777665 333321
Q ss_pred ----eCCceeEEEEeceeee----eecCCCCCceeEEEE
Q 014064 232 ----SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFH 262 (431)
Q Consensus 232 ----~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~ 262 (431)
..++|++|.+.+.... ..+..+++|+.+.+.
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 2356666666654321 123445566665554
No 57
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.81 E-value=1.1e-05 Score=74.99 Aligned_cols=109 Identities=15% Similarity=-0.017 Sum_probs=65.7
Q ss_pred eeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCC--CCCCCCCEEEEeeEEE
Q 014064 100 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGL--SGIKSLRSLTLCAVNV 177 (431)
Q Consensus 100 l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~ 177 (431)
++.+.+.- .......+..........++++|++....... ..|..+ ..+++|++|.|.++.+
T Consensus 66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------~~~~~~~~~~~~~L~~L~Ls~n~i 129 (310)
T 4glp_A 66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG--------------TMPPLPLEATGLALSSLRLRNVSW 129 (310)
T ss_dssp CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS--------------CCCCCSSSCCCBCCSSCEEESCCC
T ss_pred eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc--------------chhhhhhhccCCCCCEEEeecccc
Confidence 55655522 12222344555555555679999997654221 122233 5789999999999988
Q ss_pred cchh--HH-HHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064 178 TGEV--VE-FFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 178 ~~~~--l~-~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~ 224 (431)
++.. +. .-+..+++|+.|.|.++...... ..-..+++|+.|.++++.
T Consensus 130 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 130 ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 7531 22 22458999999999988642211 111244778888887775
No 58
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=4.1e-06 Score=70.32 Aligned_cols=60 Identities=7% Similarity=0.106 Sum_probs=46.7
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee--cC----CCCcceEEeeccCC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GS----SIPLKCLDIQFCYS 225 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~----~~~L~~L~l~~c~~ 225 (431)
.+|+.|.|+++.+++..+..+ ++|++|+.|.|.+|..+++-.+. +. +++|++|++++|..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence 579999999999999888775 89999999999999877653222 11 23677777777764
No 59
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.81 E-value=7e-06 Score=78.10 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=19.3
Q ss_pred CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
+|++|.|+.+.-.......+..++..+++|++|.+...
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 56666654433222333344455555666666666543
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.80 E-value=8.8e-06 Score=75.37 Aligned_cols=217 Identities=14% Similarity=0.081 Sum_probs=132.4
Q ss_pred CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee----eecCCCCcceEEeeccCCcceEE---EeCCce
Q 014064 164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK----VVGSSIPLKCLDIQFCYSIKEIE---ISAPNL 236 (431)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~----i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L 236 (431)
.++|++|.|.+..+++- -...+..+++|+.|.|.++.. +.+. ....+++|+.|.+.++. +..+. ...++|
T Consensus 27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence 37999999999877631 123467899999999998853 2221 11245899999999886 44332 236899
Q ss_pred eEEEEeceeeee-----ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccE
Q 014064 237 LSFKYIGQDINL-----HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN 308 (431)
Q Consensus 237 ~~L~~~~~~~~~-----~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~ 308 (431)
++|++.+..... .+..+++|+.+.+..+..... ....+..+++|+.|.+++.. +.....+.. +++|++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTF 179 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC---STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc---chhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCE
Confidence 999998875531 356788899888874432211 11445778999999998876 443233443 567777
Q ss_pred EEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcC
Q 014064 309 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENA 388 (431)
Q Consensus 309 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a 388 (431)
|.++.+.- ... ....+..+|+|++|++....-. ..... .-....+|+.+.+.+-.-..... ..+.+.
T Consensus 180 L~Ls~n~l--~~~--~~~~~~~l~~L~~L~L~~N~l~---~~~~~--~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~ 246 (306)
T 2z66_A 180 LDLSQCQL--EQL--SPTAFNSLSSLQVLNMSHNNFF---SLDTF--PYKCLNSLQVLDYSLNHIMTSKK----QELQHF 246 (306)
T ss_dssp EECTTSCC--CEE--CTTTTTTCTTCCEEECTTSCCS---BCCSG--GGTTCTTCCEEECTTSCCCBCSS----SSCCCC
T ss_pred EECCCCCc--CCc--CHHHhcCCCCCCEEECCCCccC---ccChh--hccCcccCCEeECCCCCCcccCH----HHHHhh
Confidence 77744311 111 1245678899999999553211 10000 01235788888887632111100 012334
Q ss_pred -cccccEEEEeCC
Q 014064 389 -TMLEKMIIKPSG 400 (431)
Q Consensus 389 -~~Le~m~i~~~~ 400 (431)
+.|+++.+....
T Consensus 247 ~~~L~~L~L~~N~ 259 (306)
T 2z66_A 247 PSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTCC
T ss_pred hccCCEEEccCCC
Confidence 478888876544
No 61
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.80 E-value=6.5e-06 Score=83.76 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=82.0
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCcee
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL 237 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~ 237 (431)
.+..+++|+.|.|.++.+.+-.- +..+++|+.|.|.+|.. ..+.....+++|+.|.+.+|. +..+. ...|+|+
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~ 134 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE 134 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCS
T ss_pred HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecCCC-CCCCccccCCCccC
Confidence 46788999999999887765322 78899999999998853 333323456888999888876 33221 1236677
Q ss_pred EEEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEE
Q 014064 238 SFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISF 313 (431)
Q Consensus 238 ~L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 313 (431)
.|.+++..+. -.+..+++|+.+.+..+...+.. . +..+++|+.|.++.+. +....-...+++|+.|.|..
T Consensus 135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCS
T ss_pred EEECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccC
Confidence 7776665332 12344555666555533222110 1 4455566666665554 22211111245555555543
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.80 E-value=5.9e-06 Score=83.51 Aligned_cols=226 Identities=15% Similarity=0.092 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-EeCCc
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPN 235 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i~ap~ 235 (431)
.|..+..+++|++|.+.++.+.+ +...+..+ .|+.|.+.+|... .+.. ..+++|+.|.+.++.....+. ...|+
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred chhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccccccccCCC
Confidence 34566778999999999888763 33345667 8999999988643 2222 245889999998876322221 35689
Q ss_pred eeEEEEeceeee------eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc---cccCCCc
Q 014064 236 LLSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---QREFPKL 306 (431)
Q Consensus 236 L~~L~~~~~~~~------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---~~~~~~L 306 (431)
|+.|++.+.... ..+.++++|+.+.+..+...... .-+..+++|+.|.+..+. +..... ...+++|
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS----SNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE----EEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCcccccc----ccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence 999998876432 23557888998887744322100 114566777777776554 221111 1114455
Q ss_pred cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccc----cc-c--------------CCCCcccc-cCccCCccEE
Q 014064 307 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG----RR-I--------------GKKRHQIS-KHSHQHLKLV 366 (431)
Q Consensus 307 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~----~~-~--------------~~~~~~~~-~~~~~~L~~v 366 (431)
++|.+..+.- ... ....+..+|+|++|++....-. +. . .-.+..+. -..+++|+.+
T Consensus 424 ~~L~l~~n~l--~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 424 IYLDISHTHT--RVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CEEECTTSCC--EEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CEEeCcCCcc--ccc--chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 5555432210 000 1123445556665555432110 00 0 00000011 1235678888
Q ss_pred EEeeeecCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064 367 ELQGFNGREIDFELAFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 367 ~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 400 (431)
.+.+-.-+. +....+.+.+.|+++.+....
T Consensus 500 ~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASNQLKS----VPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCcCCC----CCHHHhhcccCCcEEEecCCc
Confidence 887632111 111134678889988887654
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.79 E-value=1.4e-05 Score=78.62 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=96.1
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-eCCceeEE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF 239 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L 239 (431)
+..+++|++|.|.+..+++-. +..+++|+.|.+.++. ++.+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~-l~~l~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L 153 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK-LTKLDV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTEL 153 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC-CSCCCC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEE
T ss_pred cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc-CCeecC-CCCCcCCEEECCCCc-cceeccccCCcCCEE
Confidence 456677777777777665532 5667777777777764 222332 344677777777665 333333 24677777
Q ss_pred EEecee-e-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064 240 KYIGQD-I-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN 317 (431)
Q Consensus 240 ~~~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (431)
.+.+.. . .+.+..+++|+.+.+..+.... . . +..+++|+.|.+.... +.... ...+++|+.|.++.+.-
T Consensus 154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l----~-l~~l~~L~~L~l~~N~-l~~~~-l~~l~~L~~L~Ls~N~l- 224 (457)
T 3bz5_A 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L----D-VSQNKLLNRLNCDTNN-ITKLD-LNQNIQLTFLDCSSNKL- 224 (457)
T ss_dssp ECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C----C-CTTCTTCCEEECCSSC-CSCCC-CTTCTTCSEEECCSSCC-
T ss_pred ECCCCCcccccccccCCcCCEEECCCCccce-e----c-cccCCCCCEEECcCCc-CCeec-cccCCCCCEEECcCCcc-
Confidence 776552 2 2345667777777776443322 1 2 4667788888887666 33221 12267788877754322
Q ss_pred cccHHHHHHHHhhCCCcceEEEEee
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
.. +. +..+|+|+.|++...
T Consensus 225 -~~---ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 225 -TE---ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp -SC---CC--CTTCTTCSEEECCSS
T ss_pred -cc---cC--ccccCCCCEEEeeCC
Confidence 12 22 678899999988754
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.79 E-value=9.5e-06 Score=75.56 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=19.4
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 200 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 200 (431)
.+.++++|++|.|.+..+++. +...+..+++|+.|.|.++
T Consensus 96 ~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N 135 (313)
T 1ogq_A 96 AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYN 135 (313)
T ss_dssp GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCC
Confidence 344555555555555544321 1112445555555555554
No 65
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.78 E-value=1.5e-05 Score=81.13 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS 238 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~ 238 (431)
+..+++|+.|.|.++.+.+-. -+..+++|+.|.|.+|.. ..+.-...+++|+.|.+++|. +..+. -..++|+.
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~ 157 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT 157 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSE
T ss_pred hccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCC-CCCccccCCCccCEEECCCCc-cCCchhhcccCCCCE
Confidence 456777777777777665421 256677777777777642 222222345677777777665 33321 12367777
Q ss_pred EEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 239 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 239 L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
|+++++.+. ..+..+++|+.+.+..+...+. .-+..+++|+.|.+..+.
T Consensus 158 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 158 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-----GGGTTCTTCSEEECCSEE
T ss_pred EECcCCcCCCchhhccCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEccCCc
Confidence 777665432 1255677777777764433321 234566777777776665
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.75 E-value=1.2e-05 Score=73.11 Aligned_cols=125 Identities=18% Similarity=0.162 Sum_probs=68.8
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA 233 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~a 233 (431)
.+..+++|++|.|.+..+.+- . -+..+++|+.|.+.+|.. +.+.- -..+++|+.|.+.++. +..+.- ..
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 132 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKL 132 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCc-CCccCHHHhccC
Confidence 456788888888888877652 1 367788888888888743 22211 1245778888887765 332221 13
Q ss_pred CceeEEEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 234 PNLLSFKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 234 p~L~~L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
++|++|.+.+..+. + .+..+++|+.+.+..+..... ....+..+++|+.|.+..+.
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL---PEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc---CHHHhcCCccCCEEECCCCc
Confidence 56666666655332 1 133455555555553322110 00223445555555555444
No 67
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.74 E-value=1.2e-05 Score=76.54 Aligned_cols=137 Identities=15% Similarity=0.150 Sum_probs=73.0
Q ss_pred CCceeEEEEeecCcc-hhhHHHhhhccCC-CceEEEeeeceeeecccc------cccC-CCccEEEEEEeecCcccHHHH
Q 014064 254 PQLVDVVFHVTPMVQ-KMHCIGSIVSYLP-QLKTLELDGCNEVFAQFS------QREF-PKLMNLNISFTAANQETLLGL 324 (431)
Q Consensus 254 ~~L~~l~i~~~~~~~-~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~------~~~~-~~L~~L~l~~~~~~~~~~~~l 324 (431)
.+|+.+.+..+.... ....+...+..++ +|+.|.++.+. +..... ...+ .+|++|.|+.+.-.......+
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 466666666433221 1122334445555 89999998776 332211 1113 489999886654333444456
Q ss_pred HHHHhh-CCCcceEEEEeeccccccCCCCcc--cc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEE
Q 014064 325 SFIMKA-CPFLEKLVLQIWNNGRRIGKKRHQ--IS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMI 395 (431)
Q Consensus 325 ~~ll~~-~p~L~~L~i~~~~~~~~~~~~~~~--~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~ 395 (431)
...+.. +++|++|++.... ..+.+.. .. -....+|+.+.+.+-.-..-.-+.+..+....+.+++++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNC----LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSC----CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred HHHHhcCCCCceEEECcCCC----CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 677766 5699999997642 1221110 11 234578999998875411111233344444445555554
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.74 E-value=7.3e-06 Score=76.31 Aligned_cols=170 Identities=17% Similarity=0.178 Sum_probs=85.1
Q ss_pred CCCCCCCCCCEEEEee-EEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcc-eEE---Ee
Q 014064 159 CGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIK-EIE---IS 232 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~-~i~---i~ 232 (431)
..+.++++|++|.|.+ ..+.+. +..-+..+++|+.|.|.++.....+ ..-..+++|+.|.+.++. +. .+. -.
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~ 147 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISS 147 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGG
T ss_pred hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhc
Confidence 3456777888888874 333322 2222567778888888776532111 111234677777777664 11 111 12
Q ss_pred CCceeEEEEeceeee----eecCCCC-CceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc---cCC
Q 014064 233 APNLLSFKYIGQDIN----LHVGSLP-QLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFP 304 (431)
Q Consensus 233 ap~L~~L~~~~~~~~----~~~~~~~-~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~ 304 (431)
.++|++|++.+..+. ..+..++ +|+.+.+..+...+.. ...+..+. |+.|.++... +... .+. .++
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~---~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~ 221 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI---PPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSDK 221 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC---CGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTTS
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC---ChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcCC
Confidence 467777777765432 2344555 6777766543222110 02223333 7777776655 3211 121 245
Q ss_pred CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064 305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 341 (431)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~ 341 (431)
+|+.|.+..+.-. .... .+..+++|++|++..
T Consensus 222 ~L~~L~L~~N~l~-~~~~----~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 222 NTQKIHLAKNSLA-FDLG----KVGLSKNLNGLDLRN 253 (313)
T ss_dssp CCSEEECCSSEEC-CBGG----GCCCCTTCCEEECCS
T ss_pred CCCEEECCCCcee-eecC----cccccCCCCEEECcC
Confidence 5666665433211 0111 144567777777754
No 69
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.74 E-value=8.9e-06 Score=82.93 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=84.7
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAP 234 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap 234 (431)
.+.++++|++|.|.+..++. +..-+..++.|+.|.+.++...... .....+++|+.|.+.++.....+.. ..+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 47788999999999887653 3333678999999999988643221 1223458999999998863222221 358
Q ss_pred ceeEEEEeceeee------eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 235 NLLSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 235 ~L~~L~~~~~~~~------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
+|++|++.+.... ..+..+++|+.+.+..+..... ....+..+++|+.|.++.+.
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL---KTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE---CTTTTTTCTTCSEEECTTCC
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC---CHHHhcCCccCCeEECCCCc
Confidence 8999999876442 2367889999998875432211 01334566677777776554
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.71 E-value=1.9e-05 Score=73.93 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=20.7
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
+.++++|++|.|.+..+++-. ...+..+++|+.|.|.++.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC
T ss_pred hccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCc
Confidence 445566666666655443211 1124456666666665553
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.70 E-value=2e-05 Score=71.60 Aligned_cols=58 Identities=14% Similarity=0.027 Sum_probs=31.1
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
++|++|.|.+..+++-. ...+..+++|+.|.|.++.. +.+.. -..+++|+.|.+.++.
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCc
Confidence 56777777776654321 11245677777777776642 21111 1223566666666554
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.70 E-value=0.00037 Score=69.47 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=38.9
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc-ee-eeecCCCCcceEEeeccCCcceEEE-eCCce
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SL-KVVGSSIPLKCLDIQFCYSIKEIEI-SAPNL 236 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~l-~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L 236 (431)
.+.++++|++|.|++..+++ +... .+++|+.|.|.++...+ .+ ..-..+++|+.|.+.++. +....+ ..++|
T Consensus 64 ~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L 138 (520)
T 2z7x_B 64 VFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHL 138 (520)
T ss_dssp GGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTS
T ss_pred HhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccc
Confidence 34566666666666665442 1111 56666666666664221 01 111234666666666654 211111 12344
Q ss_pred --eEEEEece
Q 014064 237 --LSFKYIGQ 244 (431)
Q Consensus 237 --~~L~~~~~ 244 (431)
+.|.+.+.
T Consensus 139 ~L~~L~l~~n 148 (520)
T 2z7x_B 139 NISKVLLVLG 148 (520)
T ss_dssp CEEEEEEEEC
T ss_pred eeeEEEeecc
Confidence 66666553
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.68 E-value=2.6e-05 Score=72.51 Aligned_cols=85 Identities=20% Similarity=0.053 Sum_probs=50.7
Q ss_pred hcCceEEEEEcCCCCCCCccccccccccccCCCCCC--CCCCCCCEEEEeeEEEcch--hHHHHHh-cCCccceeeeccC
Q 014064 126 AKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGL--SGIKSLRSLTLCAVNVTGE--VVEFFIH-NCPLLENLRITQS 200 (431)
Q Consensus 126 ~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~~ 200 (431)
-.++++|++....... ..|..+ ..+++|++|.|.+..+++. .+..+-. ..++|+.|.|.++
T Consensus 94 l~~L~~L~L~~n~l~~--------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG--------------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TSCCCEEEEEEEBCBS--------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred cCCccEEEccCCcccc--------------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence 3578888887653221 122222 5788999999998877653 2333221 2488999999887
Q ss_pred CCCcee-eeecCCCCcceEEeeccC
Q 014064 201 PDLLSL-KVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 201 ~~~~~l-~i~~~~~~L~~L~l~~c~ 224 (431)
...... ..-..+++|+.|.++++.
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred CCccchHHHhccCCCCCEEECCCCC
Confidence 532211 111234677777777665
No 74
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.67 E-value=2.1e-06 Score=88.17 Aligned_cols=174 Identities=11% Similarity=0.117 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcch----------------hHHHHHh--cCCccceeeeccCCCCceee-eecCCCCcce
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLK-VVGSSIPLKC 217 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~ 217 (431)
+|..+.++++|++|.|.+..+++. .+..-+. .+++|+.|.|.+|...+.+. .-..+++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 566778899999999999887762 1333355 88999999999886443321 1134578999
Q ss_pred EEeeccCCcce--EE--Ee-------CCceeEEEEeceee---ee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCC
Q 014064 218 LDIQFCYSIKE--IE--IS-------APNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLP 281 (431)
Q Consensus 218 L~l~~c~~l~~--i~--i~-------ap~L~~L~~~~~~~---~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~ 281 (431)
|.+.++..+.. +. +. .++|+.|.+.+... +- .++.+++|+.+.+..+...+.+. -+..++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~ 353 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEI 353 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCC
Confidence 99888752221 11 11 27888888887643 22 46678888888877544332211 235566
Q ss_pred CceEEEeeeceeeeccccccc---CCC-ccEEEEEEeecCcccHHHHHHHHhh--CCCcceEEEEee
Q 014064 282 QLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQIW 342 (431)
Q Consensus 282 ~l~~L~l~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~~~~~~l~~ll~~--~p~L~~L~i~~~ 342 (431)
+|+.|.++... +. .+|.. +++ |++|.++.+.-. . +...+.. +++|+.|++...
T Consensus 354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~---lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLK--Y---IPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCS--S---CCSCCCTTCSSCEEEEECCSS
T ss_pred CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCc--c---cchhhhhcccCccCEEECcCC
Confidence 77777777665 33 33333 445 666666443211 1 1122222 336777777543
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.65 E-value=2.8e-05 Score=79.31 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=56.4
Q ss_pred CCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 213 IPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 213 ~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
++|+.|.++++. +..+.-..++|+.|.+.++.+...-...++|+.+.+..+... .+...+++|+.|.++.+.
T Consensus 181 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-------~lp~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 181 SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-------SLPVLPSELKELMVSGNR 252 (622)
T ss_dssp TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-------CCCCCCTTCCEEECCSSC
T ss_pred CCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC-------cCCCCCCcCcEEECCCCC
Confidence 455555555544 333322335556665555433222223455666655533222 223455667777766654
Q ss_pred eeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 293 EVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
+. .+|..+++|+.|.|+.+.- . .+..-+.++|+|+.|++...
T Consensus 253 -L~--~lp~~~~~L~~L~Ls~N~L--~---~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 253 -LT--SLPMLPSGLLSLSVYRNQL--T---RLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp -CS--CCCCCCTTCCEEECCSSCC--C---SCCGGGGGSCTTCEEECCSC
T ss_pred -CC--cCCcccccCcEEeCCCCCC--C---cCCHHHhhccccCEEEecCC
Confidence 32 2333456677766644311 1 12233566777777777554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.64 E-value=2.1e-05 Score=71.57 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=65.5
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 238 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 238 (431)
++|++|.|.+..+++-.- ..+.++++|+.|.+.++. ++.+.. -..+++|+.|.+.++. +..+.. ..++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence 568888887776543211 135667888888887774 222211 1234677777777665 333321 1356666
Q ss_pred EEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 239 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 239 L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
|.+.+.... ..+..+++|+.+.+..+..... .+...+..+++|+.|.++...
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCC
Confidence 666554321 1344566666666653322210 001334556667777666554
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.63 E-value=4e-05 Score=71.69 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=104.0
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce-eeeecCCCCcceEEeeccCCcceEEEe-CCceeEEEEe
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEIS-APNLLSFKYI 242 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~~ 242 (431)
++|++|.|.+..+++-. ...+..+++|+.|.|.++..... ...-..+++|+.|.+.++. +..+... .++|++|.+.
T Consensus 52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECC
T ss_pred CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECC
Confidence 79999999998776521 12367899999999998853221 1112356899999999876 3333211 2789999998
Q ss_pred ceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc-CCCccEEEEEEeecC
Q 014064 243 GQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAAN 317 (431)
Q Consensus 243 ~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~ 317 (431)
+..+. ..+..+++|+.+.+..+.... .+.....+..+++|+.|.+.... +. .++.. +++|++|.+..+.-.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTN-IT--TIPQGLPPSLTELHLDGNKIT 205 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSC-CC--SCCSSCCTTCSEEECTTSCCC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCc-cc--cCCccccccCCEEECCCCcCC
Confidence 77542 236778999998887544321 01111445778888998887765 32 12222 467777776432111
Q ss_pred cccHHHHHHHHhhCCCcceEEEEe
Q 014064 318 QETLLGLSFIMKACPFLEKLVLQI 341 (431)
Q Consensus 318 ~~~~~~l~~ll~~~p~L~~L~i~~ 341 (431)
.. ....+..+++|++|++..
T Consensus 206 ~~----~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 206 KV----DAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp EE----CTGGGTTCTTCCEEECCS
T ss_pred cc----CHHHhcCCCCCCEEECCC
Confidence 11 113455677777777754
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.60 E-value=1.9e-05 Score=71.85 Aligned_cols=174 Identities=15% Similarity=0.089 Sum_probs=95.9
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceE---EE-eCC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEI---EI-SAP 234 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i---~i-~ap 234 (431)
.+.++++|++|.|.+..+++-. ...+..+++|+.|.|.++...... ..-..+++|+.|.+.++. +..+ .+ ..+
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence 4567888888888887654321 123567888888888887532211 111345788888887765 2221 12 347
Q ss_pred ceeEEEEeceee-----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCce-EEEeeeceeeeccccccc---CCC
Q 014064 235 NLLSFKYIGQDI-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE---FPK 305 (431)
Q Consensus 235 ~L~~L~~~~~~~-----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~~~~~~~~---~~~ 305 (431)
+|++|.+.+... +..+..+++|+.+.+..+...........-+..++.+. .|.++... +. .++.. ..+
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~--~~~~~~~~~~~ 201 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MN--FIQPGAFKEIR 201 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CC--EECTTSSCSCC
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-cc--ccCccccCCCc
Confidence 888888876643 22456778888888875543321111112223334333 66666555 22 11111 235
Q ss_pred ccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 306 LMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 306 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
|++|.+..+.- ... ...++..+++|++|++...
T Consensus 202 L~~L~L~~n~l--~~~--~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 202 LKELALDTNQL--KSV--PDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp EEEEECCSSCC--SCC--CTTTTTTCCSCCEEECCSS
T ss_pred ccEEECCCCce--eec--CHhHhcccccccEEEccCC
Confidence 66666643321 111 1234567788888777554
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.58 E-value=5.8e-05 Score=68.60 Aligned_cols=167 Identities=11% Similarity=0.102 Sum_probs=101.4
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 238 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 238 (431)
.+++|+.|.+.+..+.+- .. +..+|.|+.|.+.++.. +.+.....+++|+.|.+.+|. +..+.- ..++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence 567888888887766532 11 56788888888888753 223323355788888888775 333321 2478888
Q ss_pred EEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc--cccCCCccEEEEE
Q 014064 239 FKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREFPKLMNLNIS 312 (431)
Q Consensus 239 L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~ 312 (431)
|.+.+..+. . .+..+++|+.+.+..+..... ....+..+++|+.|.++.+. +..... ...+++|++|.+.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL---PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCcc---CHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECC
Confidence 888876542 1 245678888888775432211 01345677888888887776 331110 1125677777765
Q ss_pred EeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 313 FTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 313 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
.+.-. .. ....+..+++|+.|++...
T Consensus 190 ~N~l~--~~--~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 190 QNQLK--SV--PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp SSCCS--CC--CTTTTTTCTTCCEEECCSS
T ss_pred CCcCC--cc--CHHHHhCCcCCCEEEccCC
Confidence 43211 11 1245677888888888654
No 80
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.57 E-value=7.8e-05 Score=67.43 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
+..+++|++|.|.+..+++-.- +..++.|+.|.|.++.
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR 96 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC
T ss_pred HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc
Confidence 4456666666666665544211 5566666666666653
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.56 E-value=0.00012 Score=74.55 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=6.8
Q ss_pred cCCccEEEEee
Q 014064 360 HQHLKLVELQG 370 (431)
Q Consensus 360 ~~~L~~v~i~~ 370 (431)
+++|+.+.+.+
T Consensus 283 l~~L~~L~L~~ 293 (622)
T 3g06_A 283 LSSETTVNLEG 293 (622)
T ss_dssp SCTTCEEECCS
T ss_pred ccccCEEEecC
Confidence 45666666655
No 82
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.55 E-value=7.4e-05 Score=73.38 Aligned_cols=135 Identities=20% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEe-CCceeEEE
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEIS-APNLLSFK 240 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~ 240 (431)
..+++|++|.+.+..+++-. ++.++.|+.|.+.+|...+.+.+ ..+++|+.|.+.++. +..+.+. .++|+.|.
T Consensus 124 ~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~ 197 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLN 197 (457)
T ss_dssp TTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEEE
Confidence 34444444444444433311 33444455555544433333211 123455555555443 2222221 24555555
Q ss_pred Eeceee-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEE
Q 014064 241 YIGQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN 310 (431)
Q Consensus 241 ~~~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~ 310 (431)
+.+..+ .+.++.+++|+.+.+..+...+ . . +..+++|+.|.++... +.... +..+++|+.|.
T Consensus 198 l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-i----p-~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~ 260 (457)
T 3bz5_A 198 CDTNNITKLDLNQNIQLTFLDCSSNKLTE-I----D-VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLH 260 (457)
T ss_dssp CCSSCCSCCCCTTCTTCSEEECCSSCCSC-C----C-CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEE
T ss_pred CcCCcCCeeccccCCCCCEEECcCCcccc-c----C-ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEe
Confidence 554433 2234455666665555433221 1 1 3456666666666554 22211 22255555543
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.55 E-value=2.5e-05 Score=71.90 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 224 (431)
++|+.|.|.+..++.-. ...+..++.|+.|.|.++. ++.+.....+++|+.|.++++.
T Consensus 31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ 88 (290)
T ss_dssp TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc
Confidence 67888888877664321 1235677888888888775 3333333455677777777654
No 84
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.54 E-value=0.00062 Score=67.81 Aligned_cols=13 Identities=0% Similarity=-0.217 Sum_probs=8.8
Q ss_pred CCCcceEEEEeec
Q 014064 331 CPFLEKLVLQIWN 343 (431)
Q Consensus 331 ~p~L~~L~i~~~~ 343 (431)
+++|++|++....
T Consensus 246 ~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 246 HTTVWYFSISNVK 258 (520)
T ss_dssp TSSCSEEEEEEEE
T ss_pred hCcccEEEeeccc
Confidence 4677777776653
No 85
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.53 E-value=5.9e-06 Score=67.74 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=30.1
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~ 224 (431)
++|++|.+.++.+++..+...+..+++|+.|.+.+|. ++.+.....+++|+.|.++++.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc
Confidence 5666666666655533333344556666666666653 2222222233555555555544
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.52 E-value=5.9e-05 Score=80.10 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=50.2
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce-eeeecCCCCcceEEeeccCCcceEEE----eC
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEI----SA 233 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~i~i----~a 233 (431)
..+..+++|++|.|.+..+.+.. ...+.++++|+.|.|.++..... ...-..+++|+.|.+.++. +..+.- ..
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence 34556677777777766554321 12245667777777766642111 0111234566666666553 222211 13
Q ss_pred CceeEEEEeceeeeeecCCCCCceeEEEE
Q 014064 234 PNLLSFKYIGQDINLHVGSLPQLVDVVFH 262 (431)
Q Consensus 234 p~L~~L~~~~~~~~~~~~~~~~L~~l~i~ 262 (431)
++|+.|++.+..+.. +..+++|+.+.+.
T Consensus 362 ~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~ 389 (844)
T 3j0a_A 362 EKLQTLDLRDNALTT-IHFIPSIPDIFLS 389 (844)
T ss_dssp CCCCEEEEETCCSCC-CSSCCSCSEEEEE
T ss_pred CCCCEEECCCCCCCc-ccCCCCcchhccC
Confidence 566666666554321 2234555555554
No 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=4.3e-06 Score=88.39 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=6.6
Q ss_pred cccccEEEEeCC
Q 014064 389 TMLEKMIIKPSG 400 (431)
Q Consensus 389 ~~Le~m~i~~~~ 400 (431)
+.|+.+.+....
T Consensus 827 ~~L~~LdLs~N~ 838 (876)
T 4ecn_A 827 PQLYILDIADNP 838 (876)
T ss_dssp SSSCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 456666655443
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.51 E-value=3.2e-05 Score=78.78 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=53.4
Q ss_pred CceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCc
Q 014064 234 PNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKL 306 (431)
Q Consensus 234 p~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L 306 (431)
|+|+.|++++..+. ..++.+++|+.+.+..+.... +......+++|+.|.++.+. +. .+|.. +++|
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~Ls~N~-l~--~i~~~~~~l~~L 326 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNH-LL--HVERNQPQFDRL 326 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE----EECSSSCCTTCCEEECCSSC-CC--CCGGGHHHHTTC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC----CCcccccCCCCcEEECCCCC-CC--ccCcccccCCCC
Confidence 55666666554321 234556666666655332221 11223557888888887776 33 22322 6788
Q ss_pred cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064 307 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN 343 (431)
Q Consensus 307 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~ 343 (431)
+.|.|..+.-. .. -+..+|+|+.|++...+
T Consensus 327 ~~L~L~~N~l~--~~-----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 327 ENLYLDHNSIV--TL-----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp SEEECCSSCCC--CC-----CCCTTCCCSEEECCSSC
T ss_pred CEEECCCCCCC--Cc-----ChhhcCCCCEEEeeCCC
Confidence 88877554221 11 15567888888887654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.49 E-value=0.00029 Score=62.48 Aligned_cols=167 Identities=13% Similarity=0.034 Sum_probs=95.2
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 238 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 238 (431)
++|++|.|.+..++.-. ...+.++++|+.|.+.++..++.+. .-..+++|+.|.+.+|..+..+.- ..++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 47888888887665311 1135678888888888886444332 123457888888887555655542 3578888
Q ss_pred EEEeceeeee--ecCCCCCce---eEEEEee-cCcchhhHHHhhhccCCCce-EEEeeeceeeeccccccc-C--CCccE
Q 014064 239 FKYIGQDINL--HVGSLPQLV---DVVFHVT-PMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE-F--PKLMN 308 (431)
Q Consensus 239 L~~~~~~~~~--~~~~~~~L~---~l~i~~~-~~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~~~~~~~~-~--~~L~~ 308 (431)
|.+.+..... .+..+++|+ .+.+..+ ..... -...+..+++|+ .|.++... +. .++.. | .+|++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i---~~~~~~~l~~L~~~L~l~~n~-l~--~i~~~~~~~~~L~~ 183 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI---PVNAFQGLCNETLTLKLYNNG-FT--SVQGYAFNGTKLDA 183 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE---CTTTTTTTBSSEEEEECCSCC-CC--EECTTTTTTCEEEE
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhc---CcccccchhcceeEEEcCCCC-Cc--ccCHhhcCCCCCCE
Confidence 8888764321 145566666 6666644 21110 003356778888 88887665 32 22222 2 34555
Q ss_pred EEEEEeecCcccHHHHHHHHhhC-CCcceEEEEe
Q 014064 309 LNISFTAANQETLLGLSFIMKAC-PFLEKLVLQI 341 (431)
Q Consensus 309 L~l~~~~~~~~~~~~l~~ll~~~-p~L~~L~i~~ 341 (431)
|.+..+. .-.... ...+..+ ++|+.|++..
T Consensus 184 L~L~~n~-~l~~i~--~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 184 VYLNKNK-YLTVID--KDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp EECTTCT-TCCEEC--TTTTTTCSBCCSEEECTT
T ss_pred EEcCCCC-CcccCC--HHHhhccccCCcEEECCC
Confidence 5543220 011110 1345667 8888888854
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.49 E-value=6e-05 Score=64.88 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=71.6
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc-eeeeecCCCCcceEEeeccCCcceEEEeCCceeE
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS 238 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~ 238 (431)
++..+++|++|.+.++.+.+- . -++.+++|+.|.+.++.... ....-..+++|+.|.+.+|.- ..
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i-~~---------- 126 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH-DD---------- 126 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC-BG----------
T ss_pred HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc-Cc----------
Confidence 345678888888887755432 1 36678888888888765322 122223446666666665541 11
Q ss_pred EEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEE
Q 014064 239 FKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISF 313 (431)
Q Consensus 239 L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 313 (431)
...-.+..+++|+.+.+..+...... ..+..+++|+.|.++.+. +........+++|++|.+..
T Consensus 127 ------~~~~~l~~l~~L~~L~L~~n~~i~~~----~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 127 ------SILTKINTLPKVNSIDLSYNGAITDI----MPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp ------GGHHHHTTCSSCCEEECCSCTBCCCC----GGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECB
T ss_pred ------HhHHHHhhCCCCCEEEccCCCCcccc----HhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeC
Confidence 00112345566666666544311111 235677888888887766 43322222377888887754
No 91
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.46 E-value=0.00018 Score=73.85 Aligned_cols=191 Identities=10% Similarity=0.070 Sum_probs=106.7
Q ss_pred cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEE-EcchhHHHHH------hcCCccceeeecc
Q 014064 127 KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVN-VTGEVVEFFI------HNCPLLENLRITQ 199 (431)
Q Consensus 127 ~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll------~~cp~Le~L~L~~ 199 (431)
.+++.|++..+... -.+|..+.++++|++|.|.++. +++..+..-+ ..+++|+.|.|.+
T Consensus 249 ~~L~~L~L~~n~l~--------------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 249 KDLTDVEVYNCPNL--------------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp TTCCEEEEECCTTC--------------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred CCCCEEEecCCcCC--------------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 36888888765322 1245567889999999999997 7652232222 3469999999998
Q ss_pred CCCCceee--eecCCCCcceEEeeccCCcceEE--EeCCceeEEEEeceeee---eecCCCCC-ceeEEEEeecCcchhh
Q 014064 200 SPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLSFKYIGQDIN---LHVGSLPQ-LVDVVFHVTPMVQKMH 271 (431)
Q Consensus 200 ~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~---~~~~~~~~-L~~l~i~~~~~~~~~~ 271 (431)
+....... ....+++|+.|.+.++.-...+. -..++|+.|.+.+.... -.+..+++ |+.+.+..+....
T Consensus 315 n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--- 391 (636)
T 4eco_A 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY--- 391 (636)
T ss_dssp SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS---
T ss_pred CcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc---
Confidence 86432111 22356789999998876221332 12367888888776443 12445666 7777776443221
Q ss_pred HHHhhhcc--CCCceEEEeeeceeeeccccccc----------CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEE
Q 014064 272 CIGSIVSY--LPQLKTLELDGCNEVFAQFSQRE----------FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVL 339 (431)
Q Consensus 272 ~~~~~~~~--~~~l~~L~l~~~~~~~~~~~~~~----------~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i 339 (431)
+...+.. +++|+.|.++... +.. ..|.. ..+|++|.+..+.- .... ..++..+++|+.|++
T Consensus 392 -lp~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l--~~lp--~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 392 -IPNIFDAKSVSVMSAIDFSYNE-IGS-VDGKNFDPLDPTPFKGINVSSINLSNNQI--SKFP--KELFSTGSPLSSINL 464 (636)
T ss_dssp -CCSCCCTTCSSCEEEEECCSSC-TTT-TTTCSSCTTCSSCCCCCCEEEEECCSSCC--CSCC--THHHHTTCCCSEEEC
T ss_pred -cchhhhhcccCccCEEECcCCc-CCC-cchhhhcccccccccCCCCCEEECcCCcc--CcCC--HHHHccCCCCCEEEC
Confidence 0011122 3367777776655 221 11111 22555555533211 1111 244556677777776
Q ss_pred Ee
Q 014064 340 QI 341 (431)
Q Consensus 340 ~~ 341 (431)
..
T Consensus 465 s~ 466 (636)
T 4eco_A 465 MG 466 (636)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.46 E-value=2.7e-05 Score=76.23 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=35.7
Q ss_pred cCCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064 20 LEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 57 (431)
Q Consensus 20 ~~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l 57 (431)
..|.|+.||+||+.+||+||+.+++++++.|||+|+++
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI 48 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999875
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.43 E-value=2.8e-05 Score=72.20 Aligned_cols=215 Identities=12% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCCEEEEeeEEEcchhHHHHHh--cCCccceeeeccCCCCcee--eee-cCCCCcceEEeeccCCcce------EE-Ee
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIH--NCPLLENLRITQSPDLLSL--KVV-GSSIPLKCLDIQFCYSIKE------IE-IS 232 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l--~i~-~~~~~L~~L~l~~c~~l~~------i~-i~ 232 (431)
..++.|.+..+.+++..+..+.. .++.|++|.+.+|...+.. .+. ..+++|+.|.+.++.-... .. ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 45677777777776655544432 3566888888777532221 111 3446788888877652110 10 13
Q ss_pred CCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEeeeceeeec-cc----cccc
Q 014064 233 APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFA-QF----SQRE 302 (431)
Q Consensus 233 ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~-~~----~~~~ 302 (431)
.++|++|.+.+..+. -.+..+++|+.+.+..+...+...... ..+..+++|+.|.++.+. +.. .. +...
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 577888888766432 234467778777777543221111111 223567778888877765 321 11 1112
Q ss_pred CCCccEEEEEEeecCcccHHHHHHHHhhC---CCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHH
Q 014064 303 FPKLMNLNISFTAANQETLLGLSFIMKAC---PFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFE 379 (431)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~---p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~ 379 (431)
+++|++|.|+.+.-..... .-+..+ |+|++|.+....-. ..+. ...++|+.+.+.+-.-+.-.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~~L~~L~Ls~N~l~-------~lp~-~~~~~L~~L~Ls~N~l~~~~-- 288 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVN----PSAPRCMWSSALNSLNLSFAGLE-------QVPK-GLPAKLRVLDLSSNRLNRAP-- 288 (310)
T ss_dssp TCCCSSEECTTSCCCCCCC----SCCSSCCCCTTCCCEECCSSCCC-------SCCS-CCCSCCSCEECCSCCCCSCC--
T ss_pred CCCCCEEECCCCCCCccch----hhHHhccCcCcCCEEECCCCCCC-------chhh-hhcCCCCEEECCCCcCCCCc--
Confidence 5677777774432111100 111233 67888877543211 1111 11256777766552211100
Q ss_pred HHHHHHhcCcccccEEEEe
Q 014064 380 LAFYVFENATMLEKMIIKP 398 (431)
Q Consensus 380 l~~~ll~~a~~Le~m~i~~ 398 (431)
.....+.|+.+.+..
T Consensus 289 ----~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 289 ----QPDELPEVDNLTLDG 303 (310)
T ss_dssp ----CTTSCCCCSCEECSS
T ss_pred ----hhhhCCCccEEECcC
Confidence 024557777776654
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.40 E-value=4.1e-05 Score=79.13 Aligned_cols=36 Identities=17% Similarity=0.036 Sum_probs=15.7
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
++|+.|.|.++.+.+-. ...+..+++|+.|.|.++.
T Consensus 381 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 416 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNE 416 (680)
T ss_dssp SCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred CcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCc
Confidence 34555555544333210 1123445555555555443
No 95
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.40 E-value=0.00045 Score=73.27 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=22.5
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS 200 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~ 200 (431)
+.++++|++|.|.++.+.+......++.+++|+.|.|.++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 4556666666666665544323333556666666666554
No 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.39 E-value=3.7e-05 Score=79.50 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=10.4
Q ss_pred HhcCcccccEEEEeCC
Q 014064 385 FENATMLEKMIIKPSG 400 (431)
Q Consensus 385 l~~a~~Le~m~i~~~~ 400 (431)
+.+.+.|+++.+....
T Consensus 580 ~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNL 595 (680)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred hCCCCCCCEEECCCCc
Confidence 3566777777776553
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.34 E-value=4e-05 Score=71.78 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=9.1
Q ss_pred HhhCCCcceEEEEe
Q 014064 328 MKACPFLEKLVLQI 341 (431)
Q Consensus 328 l~~~p~L~~L~i~~ 341 (431)
+..+|+|+.|++..
T Consensus 237 ~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 237 LSFLPTLRELHLDN 250 (332)
T ss_dssp GGGCTTCCEEECCS
T ss_pred hhCCCCCCEEECCC
Confidence 45667777777754
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.33 E-value=5.5e-05 Score=70.88 Aligned_cols=223 Identities=14% Similarity=0.053 Sum_probs=111.3
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCc
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPN 235 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~ 235 (431)
.+.++++|++|.|.+..+++- ....+..+++|+.|.|.++.- +.+..... ++|++|.+.++. +..+.- ..++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNLP-SSLVELRIHDNR-IRKVPKGVFSGLRN 148 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSCC-TTCCEEECCSSC-CCCCCSGGGSSCSS
T ss_pred HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCcccc-ccCCEEECCCCc-cCccCHhHhCCCcc
Confidence 456777888888877755432 112356677888888777642 22111111 567777776654 222211 2356
Q ss_pred eeEEEEeceeee---e---ecCCC--------------------CCceeEEEEeecCcchhhHHHhhhccCCCceEEEee
Q 014064 236 LLSFKYIGQDIN---L---HVGSL--------------------PQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELD 289 (431)
Q Consensus 236 L~~L~~~~~~~~---~---~~~~~--------------------~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~ 289 (431)
|+.|++.+.... . .+..+ ++|+.+.+..+..... ....+..+++|+.|.++
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~---~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI---ELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC---CTTSSTTCTTCSCCBCC
T ss_pred CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc---CHHHhcCCCCCCEEECC
Confidence 666666554321 0 11111 2344444332211100 00234667788888887
Q ss_pred eceeeeccc--ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc--ccCccCCccE
Q 014064 290 GCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI--SKHSHQHLKL 365 (431)
Q Consensus 290 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~--~~~~~~~L~~ 365 (431)
... +.... ....+++|++|.+..+.-. .+..-+..+++|+.|++....-... ....... ......+|+.
T Consensus 226 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 226 HNQ-IRMIENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp SSC-CCCCCTTGGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSE
T ss_pred CCc-CCcCChhHhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCCCCCcc-ChhHccccccccccccccc
Confidence 765 32211 1122678888888553211 2223467899999999976421111 1010100 0122467888
Q ss_pred EEEeeeecCchhHHHHHHHHhcCcccccEEEEe
Q 014064 366 VELQGFNGREIDFELAFYVFENATMLEKMIIKP 398 (431)
Q Consensus 366 v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~ 398 (431)
+.+.+-..... ......+.+.+.|+.+.+..
T Consensus 299 L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 299 ISLFNNPVPYW--EVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp EECCSSSSCGG--GSCGGGGTTBCCSTTEEC--
T ss_pred eEeecCccccc--ccCcccccccchhhhhhccc
Confidence 88877433311 11112345677788776643
No 99
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.33 E-value=0.00014 Score=65.86 Aligned_cols=82 Identities=18% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SA 233 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~a 233 (431)
.+.++++|++|.|.+..++.- -..++..++.|+.|.|.++.. ..+. ....+++|+.|.+.++. +..+.- ..
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 132 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSL 132 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcC
Confidence 567889999999998876531 123457789999999988753 2221 11244778888887764 222211 23
Q ss_pred CceeEEEEece
Q 014064 234 PNLLSFKYIGQ 244 (431)
Q Consensus 234 p~L~~L~~~~~ 244 (431)
++|++|++.+.
T Consensus 133 ~~L~~L~Ls~n 143 (270)
T 2o6q_A 133 TKLTYLSLGYN 143 (270)
T ss_dssp TTCCEEECCSS
T ss_pred cCCCEEECCCC
Confidence 55555555544
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.32 E-value=7.1e-05 Score=69.50 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCCCCCEEEEeeEEEcchhHHHH-HhcCCccceeeeccCC
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFF-IHNCPLLENLRITQSP 201 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~L~~~~ 201 (431)
++++|++|.|.+..+++..-..+ +..+++|+.|.|.++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence 35666666666666554221111 2556666666666653
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.24 E-value=0.00012 Score=71.10 Aligned_cols=38 Identities=21% Similarity=0.438 Sum_probs=35.6
Q ss_pred cCCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064 20 LEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 57 (431)
Q Consensus 20 ~~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l 57 (431)
..|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 46899999999999999999999999999999999863
No 102
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.19 E-value=8.1e-05 Score=72.32 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=34.5
Q ss_pred CCcCCCCCHH----HHHHHHhcCChHHHHHHHHHhhhhhh
Q 014064 21 EDWFSRFPDD----ILIHIISGLTLKEAARTSVLSSRWKY 56 (431)
Q Consensus 21 ~D~is~LPd~----lL~~Ils~L~~~~~~r~s~vSrrWr~ 56 (431)
.|.|+.||+| |+.+||+||+.+++++++.|||+|++
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 6889999999 99999999999999999999999995
No 103
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.19 E-value=0.0008 Score=67.79 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=50.9
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-----eCC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-----SAP 234 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-----~ap 234 (431)
.+.++++|++|.|.+..+++-. ...+.++++|+.|+|.++.- +.+.-. .+++|+.|.++++. +..+.+ ..+
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRL-QNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLT 146 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCC-CEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCT
T ss_pred hhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcC-CccCcc-ccccCCEEECCCCC-ccccCchHhhcccC
Confidence 3456677777777766554311 12245667777777766642 222211 44667777766665 333221 235
Q ss_pred ceeEEEEeceeee-eecCCCCCc--eeEEEEe
Q 014064 235 NLLSFKYIGQDIN-LHVGSLPQL--VDVVFHV 263 (431)
Q Consensus 235 ~L~~L~~~~~~~~-~~~~~~~~L--~~l~i~~ 263 (431)
+|++|++.+..+. ..+..+++| +.+.+..
T Consensus 147 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEE
T ss_pred cccEEecCCCccccCchhhhhhceeeEEEeec
Confidence 6666666655332 122333344 5555543
No 104
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.17 E-value=8.9e-05 Score=62.51 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=43.9
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL 237 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~ 237 (431)
..+++|++|.|.++.++. +..+...+|.|+.|.+.++. ++.+..-..+++|+.|.++++. +..+.- ..|+|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 355778888888776653 23333445588888887774 3333222345667777776665 333321 234555
Q ss_pred EEEEece
Q 014064 238 SFKYIGQ 244 (431)
Q Consensus 238 ~L~~~~~ 244 (431)
+|.+.+.
T Consensus 92 ~L~L~~N 98 (176)
T 1a9n_A 92 ELILTNN 98 (176)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 5555443
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.16 E-value=0.0003 Score=62.33 Aligned_cols=166 Identities=11% Similarity=0.082 Sum_probs=96.8
Q ss_pred CCCCCCCCCEEEEeeEE-EcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEE--EeCC
Q 014064 160 GLSGIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE--ISAP 234 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~--i~ap 234 (431)
.+.++++|++|.|.+.. ++.-. ...+.++++|+.|.+.+|..++.+. .-..+++|+.|.+.++. +..+. -..+
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence 45688999999999875 43211 1135789999999999865555443 12245889999998875 22221 1234
Q ss_pred cee---EEEEece-eee-e---ecCCCCCce-eEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc-c--
Q 014064 235 NLL---SFKYIGQ-DIN-L---HVGSLPQLV-DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR-E-- 302 (431)
Q Consensus 235 ~L~---~L~~~~~-~~~-~---~~~~~~~L~-~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~-- 302 (431)
+|+ +|++.+. .+. + .+.++++|+ .+.+..+.... +.. ..+.. ++|+.|.++....+. .++. .
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~--~~~~~-~~L~~L~L~~n~~l~--~i~~~~~~ 201 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQG--YAFNG-TKLDAVYLNKNKYLT--VIDKDAFG 201 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECT--TTTTT-CEEEEEECTTCTTCC--EECTTTTT
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCH--hhcCC-CCCCEEEcCCCCCcc--cCCHHHhh
Confidence 565 8888876 442 2 355678888 77776433221 000 22233 789999997763122 2222 1
Q ss_pred -C-CCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEE
Q 014064 303 -F-PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ 340 (431)
Q Consensus 303 -~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~ 340 (431)
+ ++|+.|.+..+.- ..... ..+++|+.|.+.
T Consensus 202 ~l~~~L~~L~l~~N~l--~~l~~-----~~~~~L~~L~l~ 234 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSV--TALPS-----KGLEHLKELIAR 234 (239)
T ss_dssp TCSBCCSEEECTTCCC--CCCCC-----TTCTTCSEEECT
T ss_pred ccccCCcEEECCCCcc--ccCCh-----hHhccCceeecc
Confidence 3 5677777643211 11111 156788888764
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.07 E-value=0.00024 Score=69.65 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=99.7
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEece
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 244 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~ 244 (431)
++|++|.+.++.+.. +.. +..++.|+.|.+.++.-. . +....++|+.|.+.++. +..+.-..++|+.|++++.
T Consensus 215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~-~--l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLK-T--LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-S--CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCC-c--ccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence 689999999887763 322 678999999999987532 2 22233789999998876 4444334578999998877
Q ss_pred eeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHH
Q 014064 245 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGL 324 (431)
Q Consensus 245 ~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 324 (431)
.....-.-.++|+.+.+..+... .+....++|+.|.++... +. .++..+++|+.|.++.+.-. ...
T Consensus 288 ~l~~l~~~~~~L~~L~l~~N~l~-------~i~~~~~~L~~L~Ls~N~-l~--~lp~~~~~L~~L~L~~N~l~--~lp-- 353 (454)
T 1jl5_A 288 IFSGLSELPPNLYYLNASSNEIR-------SLCDLPPSLEELNVSNNK-LI--ELPALPPRLERLIASFNHLA--EVP-- 353 (454)
T ss_dssp CCSEESCCCTTCCEEECCSSCCS-------EECCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSCCS--CCC--
T ss_pred ccCcccCcCCcCCEEECcCCcCC-------cccCCcCcCCEEECCCCc-cc--cccccCCcCCEEECCCCccc--ccc--
Confidence 54321122367888877744332 222222588999987766 33 25555788999888654221 221
Q ss_pred HHHHhhCCCcceEEEEee
Q 014064 325 SFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 325 ~~ll~~~p~L~~L~i~~~ 342 (431)
. .+++|++|++...
T Consensus 354 -~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 354 -E---LPQNLKQLHVEYN 367 (454)
T ss_dssp -C---CCTTCCEEECCSS
T ss_pred -c---hhhhccEEECCCC
Confidence 1 4689999998764
No 107
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.03 E-value=0.0015 Score=65.74 Aligned_cols=119 Identities=18% Similarity=0.155 Sum_probs=82.5
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE-eCCceeEEEE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY 241 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~ 241 (431)
++|++|.|.+..+++-. ..-+.++++|+.|.|.++. ++.+.. -..+++|+.|+++++. +..+.- ..++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEEC
T ss_pred CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence 89999999999876432 1236789999999999985 333211 2345899999999886 443321 5689999999
Q ss_pred eceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCc--eEEEeeece
Q 014064 242 IGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL--KTLELDGCN 292 (431)
Q Consensus 242 ~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l--~~L~l~~~~ 292 (431)
++..+. -.++++++|+.+.+..+.... .-+..++++ +.|.+....
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ------LDLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT------TTTGGGTTSCEEEEEEEESS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc------CchhhhhhceeeEEEeeccc
Confidence 887542 246788999999998654332 112334444 888887654
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.02 E-value=0.00034 Score=63.20 Aligned_cols=143 Identities=12% Similarity=0.142 Sum_probs=96.6
Q ss_pred CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-EeCCceeEEE
Q 014064 162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFK 240 (431)
Q Consensus 162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L~ 240 (431)
..+++|++|.+.++.+++- . -+..+++|+.|.|.++.- +.+.-...+++|+.|.++++. +..+. +..++|+.|.
T Consensus 38 ~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEE
T ss_pred hhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEE
Confidence 4678999999998877642 2 367889999999988853 222213456889999998876 22211 1128899999
Q ss_pred Eeceeeee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEee
Q 014064 241 YIGQDINL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTA 315 (431)
Q Consensus 241 ~~~~~~~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 315 (431)
+.+..+.. .+..+++|+.+.+..+...+. ..+..+++|+.|.++... +........+++|+.|.+..+.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence 98875421 366788899888875543321 345778999999998877 4433222337788888887654
No 109
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=96.98 E-value=0.00026 Score=64.91 Aligned_cols=163 Identities=15% Similarity=0.122 Sum_probs=93.3
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCc
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPN 235 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~ 235 (431)
.+.++++|++|.|.+..++.-.. ...++.|+.|.|.++..-........+++|+.|.+.++. +..+.- ..++
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~ 125 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGE 125 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTT
T ss_pred HhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCC
Confidence 45678999999998886654211 167899999999887532211222345788888888775 333321 2367
Q ss_pred eeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccE
Q 014064 236 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN 308 (431)
Q Consensus 236 L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~ 308 (431)
|++|.+.+..+. ..+..+++|+.+.+..+..... -...+..+++|+.|.++... +. .+|.. ..+|+.
T Consensus 126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~l~~L~~L~L~~N~-l~--~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL---PAGLLNGLENLDTLLLQENS-LY--TIPKGFFGSHLLPF 199 (290)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC---CTTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCCCSE
T ss_pred CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc---CHHHhcCcCCCCEEECCCCc-CC--ccChhhcccccCCe
Confidence 888887776442 1234567777777664332210 00345667788888887665 32 23333 345666
Q ss_pred EEEEEee-cCcccHHHHHHHHhhCC
Q 014064 309 LNISFTA-ANQETLLGLSFIMKACP 332 (431)
Q Consensus 309 L~l~~~~-~~~~~~~~l~~ll~~~p 332 (431)
|.|..+. ....+...+...++.-+
T Consensus 200 l~L~~Np~~C~c~~~~l~~wl~~~~ 224 (290)
T 1p9a_G 200 AFLHGNPWLCNCEILYFRRWLQDNA 224 (290)
T ss_dssp EECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred EEeCCCCccCcCccHHHHHHHHhCc
Confidence 6664321 11133444555555433
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.95 E-value=0.00056 Score=61.16 Aligned_cols=123 Identities=14% Similarity=0.120 Sum_probs=60.1
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCCceeEE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLSF 239 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~L 239 (431)
++|++|.|.+..+.+-. ...+..+++|+.|.|.++..-... ..-..+++|+.|.+.++. +..+.. ..++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 56777777776654321 122556777777777766421111 001234566777666654 222211 23566666
Q ss_pred EEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 240 KYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 240 ~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
.+.+..+. + .+..+++|+.+.+..+...... ...+..+++|+.|+++...
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP---AGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccC---HHHcCcCcCCCEEECCCCc
Confidence 66554332 1 1334556666555533221100 0233455666666665554
No 111
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.94 E-value=7e-05 Score=71.44 Aligned_cols=165 Identities=18% Similarity=0.158 Sum_probs=83.9
Q ss_pred CCCCEEEEeeEEEcchh---HHHHHh-cCCccceeeeccCCCCc-ee-eeecCCCCcceEEeeccCCcceEEEeCCceeE
Q 014064 165 KSLRSLTLCAVNVTGEV---VEFFIH-NCPLLENLRITQSPDLL-SL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS 238 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~---l~~ll~-~cp~Le~L~L~~~~~~~-~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~ 238 (431)
++|++|.|.++.+++.. +...+. .++.|++|+|.+|..-. .+ .+...+++|+.|.+.+|. +......+ |
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~--L-- 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKD--L-- 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHH--H--
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHH--H--
Confidence 67788888887776543 334444 34688888887775211 01 111112456666666554 11000000 0
Q ss_pred EEEeceeeeeecCCCCCceeEEEEeecCcc-hhhHHHhhhccCCCceEEEeeeceeeeccc---cc---ccCCCccEEEE
Q 014064 239 FKYIGQDINLHVGSLPQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQ---REFPKLMNLNI 311 (431)
Q Consensus 239 L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~---~~~~~L~~L~l 311 (431)
........++|+.+.+..+.... ....+...+..+++|+.|+++.+. +.... +. ...++|++|.|
T Consensus 147 -------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 147 -------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp -------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred -------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEEC
Confidence 00000123445555554332211 112233445667778888887765 33211 11 12457777777
Q ss_pred EEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 312 SFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
+.+.-.......+...+..+|+|++|++...
T Consensus 219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 219 AYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 6543222333456777888999999998654
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.89 E-value=0.00052 Score=67.25 Aligned_cols=158 Identities=15% Similarity=0.040 Sum_probs=102.3
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEE
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 239 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L 239 (431)
.+.++++|++|.+.+..+++ +. ...+.|+.|.+.+|.. ..+.-...+++|+.|.+.++. +..+.-..++|++|
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L 262 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKK--LP---DLPLSLESIVAGNNIL-EELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEAL 262 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEE
T ss_pred cccCCCCCCEEECCCCcCCc--CC---CCcCcccEEECcCCcC-CcccccCCCCCCCEEECCCCc-CCcccccccccCEE
Confidence 57889999999999887764 11 2346899999999853 233223356899999999876 33333234899999
Q ss_pred EEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcc
Q 014064 240 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE 319 (431)
Q Consensus 240 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 319 (431)
++.+......-...++|+.+.+..+... .+....++|+.|.++... +.. ++...++|+.|.++.+.-.
T Consensus 263 ~l~~N~l~~l~~~~~~L~~L~ls~N~l~-------~l~~~~~~L~~L~l~~N~-l~~--i~~~~~~L~~L~Ls~N~l~-- 330 (454)
T 1jl5_A 263 NVRDNYLTDLPELPQSLTFLDVSENIFS-------GLSELPPNLYYLNASSNE-IRS--LCDLPPSLEELNVSNNKLI-- 330 (454)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCS-------EESCCCTTCCEEECCSSC-CSE--ECCCCTTCCEEECCSSCCS--
T ss_pred ECCCCcccccCcccCcCCEEECcCCccC-------cccCcCCcCCEEECcCCc-CCc--ccCCcCcCCEEECCCCccc--
Confidence 9987754322223577888888754333 222233689999998776 322 2332368999988553211
Q ss_pred cHHHHHHHHhhCCCcceEEEEee
Q 014064 320 TLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 320 ~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
... ..+++|++|++...
T Consensus 331 ~lp------~~~~~L~~L~L~~N 347 (454)
T 1jl5_A 331 ELP------ALPPRLERLIASFN 347 (454)
T ss_dssp CCC------CCCTTCCEEECCSS
T ss_pred ccc------ccCCcCCEEECCCC
Confidence 111 13589999999654
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.79 E-value=0.00052 Score=61.38 Aligned_cols=128 Identities=14% Similarity=0.105 Sum_probs=81.2
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAP 234 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap 234 (431)
.+.++++|++|.|.+..+++- ....+..+++|+.|.|.++...... ..-..+++|+.|.+.++. +..+.- ..+
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 131 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT 131 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence 456788999999988876542 1233567889999999887532111 111345788888888775 443321 247
Q ss_pred ceeEEEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 235 NLLSFKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 235 ~L~~L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
+|+.|.+.+..+. + .+..+++|+.+.+..+...... ...+..+++|+.|.+.+..
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP---HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSCC
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC---HHHHhCCCCCCEEEeeCCc
Confidence 8899998877542 1 3567788998888754332110 0234566677777776655
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.78 E-value=0.00016 Score=60.26 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=50.5
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEE-----EeCC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE-----ISAP 234 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~-----i~ap 234 (431)
+..+++|+.|.|.++.+++- ..+..+++|+.|.|.+|.....+ .....+++|+.|.+.++. +..+. -..|
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLE 120 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCS
T ss_pred HHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCC
Confidence 34556666666666655432 33455666666666655432211 111124566666666554 22211 1235
Q ss_pred ceeEEEEeceeee-------eecCCCCCceeEEEEee
Q 014064 235 NLLSFKYIGQDIN-------LHVGSLPQLVDVVFHVT 264 (431)
Q Consensus 235 ~L~~L~~~~~~~~-------~~~~~~~~L~~l~i~~~ 264 (431)
+|+.|++.+..+. ..+..+++|+.+.+..+
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666666655321 13556777777766643
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.77 E-value=2.3e-05 Score=67.65 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~ 224 (431)
+..+++|++|.|.+..+++ +. .+..+++|+.|.+.+|.. +.+ .....+++|+.|.+.++.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ 104 (198)
T ss_dssp HHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEE
T ss_pred HhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCc
Confidence 3456777777777777665 22 356677777777776632 111 111112456666665553
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.73 E-value=0.00049 Score=69.24 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=32.8
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 242 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 242 (431)
.+++|++|.|.+..+++ +.. +.. +|+.|.|.++.. +.+.- .+++|+.|.++++. +..+.-..++|+.|.++
T Consensus 98 ~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls 168 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQL-TMLPE--LPALLEYINADNNQ-LTMLPELPTSLEVLSVR 168 (571)
T ss_dssp CCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCC-SCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred ccCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcC-CCCCC--cCccccEEeCCCCc-cCcCCCcCCCcCEEECC
Confidence 34555555555554443 111 111 555555555432 11111 23556666655554 22222233456666555
Q ss_pred ce
Q 014064 243 GQ 244 (431)
Q Consensus 243 ~~ 244 (431)
++
T Consensus 169 ~N 170 (571)
T 3cvr_A 169 NN 170 (571)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.56 E-value=0.00071 Score=58.47 Aligned_cols=145 Identities=15% Similarity=0.075 Sum_probs=74.1
Q ss_pred CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064 164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY 241 (431)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 241 (431)
.++|++|.|.+..+++- ....+..+++|+.|.+.++.. +.+.. -..+++|+.|.+.++. +..+.-
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---------- 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN---------- 93 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccCH----------
Confidence 46788888888776532 123356788888888887642 22211 1234667777766654 221110
Q ss_pred eceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEEEEeecCcc
Q 014064 242 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQE 319 (431)
Q Consensus 242 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~ 319 (431)
..+..+++|+.+.+..+..... ....+..+++|+.|.++... +.... ....+++|++|.+..+.
T Consensus 94 ------~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~---- 159 (208)
T 2o6s_A 94 ------GVFDKLTQLKELALNTNQLQSL---PDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP---- 159 (208)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC----
T ss_pred ------hHhcCccCCCEEEcCCCcCccc---CHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC----
Confidence 1123444455444442221100 00234567777888776655 32110 01125566666664321
Q ss_pred cHHHHHHHHhhCCCcceEEEEee
Q 014064 320 TLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 320 ~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
+...||+|+.|.+...
T Consensus 160 -------~~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 160 -------WDCTCPGIRYLSEWIN 175 (208)
T ss_dssp -------BCCCTTTTHHHHHHHH
T ss_pred -------eecCCCCHHHHHHHHH
Confidence 1135677777766553
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.55 E-value=0.0043 Score=58.34 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=34.6
Q ss_pred hhhccCCCceEEEeeeceeeeccccccc-CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 275 SIVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 275 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
+.+..+++|+.|+++... +. .+|.. |.+|++|.+..... .... . -+.+.++|+.+++...
T Consensus 196 ~~f~~l~~L~~LdLs~N~-l~--~lp~~~~~~L~~L~~l~~~~-l~~l---P-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTR-IH--SLPSYGLENLKKLRARSTYN-LKKL---P-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTTTTEECCSEEECTTSC-CC--CCCSSSCTTCCEEECTTCTT-CCCC---C-CTTTCCSCCEEECSCH
T ss_pred HHhccCcccchhhcCCCC-cC--ccChhhhccchHhhhccCCC-cCcC---C-CchhCcChhhCcCCCC
Confidence 345677788888887765 32 33333 77888887522211 1111 1 1456778888877543
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=96.38 E-value=0.00048 Score=59.56 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=49.6
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAP 234 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap 234 (431)
+.++++|++|.|.+..+++- ....+..+++|+.|.|.++.. +.+. .-..+++|+.|.+.++. +..+.- ..+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLT 124 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCC
Confidence 46789999999998876532 223467789999999988753 2221 11244778888877664 222211 124
Q ss_pred ceeEEEEece
Q 014064 235 NLLSFKYIGQ 244 (431)
Q Consensus 235 ~L~~L~~~~~ 244 (431)
+|+.|++.+.
T Consensus 125 ~L~~L~l~~N 134 (208)
T 2o6s_A 125 QLKDLRLYQN 134 (208)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECCCC
Confidence 5555555544
No 120
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=96.34 E-value=0.017 Score=58.47 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEe----CCceeE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEIS----APNLLS 238 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~----ap~L~~ 238 (431)
+++++|.|++..++.-. ..-++++++|+.|+|.+|. ++.+.- -..+++|+.|.+.++. +..+... .++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence 47899999887664310 1125778999999998884 333221 1245677777777764 4433221 244555
Q ss_pred EEEece
Q 014064 239 FKYIGQ 244 (431)
Q Consensus 239 L~~~~~ 244 (431)
|++.+.
T Consensus 129 L~Ls~N 134 (635)
T 4g8a_A 129 LVAVET 134 (635)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 544443
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.30 E-value=0.00021 Score=58.31 Aligned_cols=114 Identities=16% Similarity=0.089 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCc
Q 014064 157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPN 235 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~ 235 (431)
+|..+..+++|+.|.|.++.+++- ..+..++.|+.|.+.++.....+ .....+++|+.|.+.++. +..+..
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~---- 105 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLST---- 105 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHH----
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHH----
Confidence 344456789999999998877654 44678899999999888643311 111234677777777665 222100
Q ss_pred eeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEee
Q 014064 236 LLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELD 289 (431)
Q Consensus 236 L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~ 289 (431)
...+..+++|+.+.+..+...+...+....+..+++|+.|+++
T Consensus 106 -----------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 106 -----------IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -----------HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred -----------HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 0123345555555554332222112212455677777777653
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=96.24 E-value=0.0016 Score=57.33 Aligned_cols=125 Identities=15% Similarity=0.092 Sum_probs=67.3
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 242 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 242 (431)
++|++|.|.+..+.+- ....+..+++|+.|.|.++.. +.+.. -..+++|+.|.+.++. +..+.-
T Consensus 40 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~----------- 105 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPS----------- 105 (229)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT-----------
T ss_pred CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccCh-----------
Confidence 8899999998877642 123367789999999988753 32211 1234677777776654 222211
Q ss_pred ceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEEEE
Q 014064 243 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISF 313 (431)
Q Consensus 243 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~ 313 (431)
..+..+++|+.+.+..+.... +..-+..+++|+.|.++... +.... ....+++|+.|.+..
T Consensus 106 -----~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 106 -----AVFDRLVHLKELFMCCNKLTE----LPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCS----CCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred -----hHhCcchhhCeEeccCCcccc----cCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence 112334444444444322110 01223566778888877665 32111 111256667666643
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.22 E-value=0.0021 Score=56.20 Aligned_cols=145 Identities=11% Similarity=0.027 Sum_probs=69.2
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee--eeecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 242 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~ 242 (431)
++|+.|.|.+..++.-. ...+..+++|+.|.|.++.. ..+ ..-..+++|+.|.++++. +..+.-
T Consensus 32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~----------- 97 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK-ITELPK----------- 97 (220)
T ss_dssp TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCSSC-CCCCCT-----------
T ss_pred cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCCCc-CCccCH-----------
Confidence 67888888877654311 11356678888888887742 221 111233566666666553 222110
Q ss_pred ceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEEEEee-cCcc
Q 014064 243 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTA-ANQE 319 (431)
Q Consensus 243 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~ 319 (431)
..+.++++|+.+.+..+...... ...+..+++|+.|.++... +.... ....+++|++|.|..+. ....
T Consensus 98 -----~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 98 -----SLFEGLFSLQLLLLNANKINCLR---VDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp -----TTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred -----hHccCCCCCCEEECCCCCCCEeC---HHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 11233444554444432211100 0234556677777776655 22111 01114566666664321 1113
Q ss_pred cHHHHHHHHhhCC
Q 014064 320 TLLGLSFIMKACP 332 (431)
Q Consensus 320 ~~~~l~~ll~~~p 332 (431)
...++...++.-+
T Consensus 169 ~l~~l~~~l~~~~ 181 (220)
T 2v9t_B 169 HLKWLADYLHTNP 181 (220)
T ss_dssp GGHHHHHHHHHCC
T ss_pred ccHHHHHHHHhCC
Confidence 4455555665543
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.13 E-value=0.009 Score=49.92 Aligned_cols=131 Identities=13% Similarity=0.081 Sum_probs=68.0
Q ss_pred hcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEeec
Q 014064 187 HNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 265 (431)
Q Consensus 187 ~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~ 265 (431)
..|+.|+.|.+.++.. +.+ .+....++|+.|.++++. +..+. .+..+++|+.+.+..+.
T Consensus 16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~------------------~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLD------------------GFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEEC------------------CCCCCSSCCEEECCSSC
T ss_pred CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCccc------------------ccccCCCCCEEECCCCc
Confidence 3588899999988843 222 122222478888877765 33331 12234444444444322
Q ss_pred CcchhhHHHhhhccCCCceEEEeeeceeeeccc---ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 266 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
..... ..++..+++|+.|.++... +.... ....+++|+.|.+..+.-.. ....-..++..+|+|+.|++...
T Consensus 76 l~~~~---~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 76 ICRIG---EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCEEC---SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred ccccC---cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence 11100 0233566777777776665 32111 11126677777765432111 11112346788899998888664
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.13 E-value=0.0066 Score=56.45 Aligned_cols=94 Identities=12% Similarity=0.191 Sum_probs=49.4
Q ss_pred eeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCC--CCCcccccccc---ccccCCCC-CCCC--------CC
Q 014064 100 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT--YDNYYEIPQEC---YKNLQSGC-GLSG--------IK 165 (431)
Q Consensus 100 l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~--~~~~~~lp~~~---~~~l~lp~-~~~~--------~~ 165 (431)
|..+.+...... ..+ .++... ..+++.|++....-. ......+|... +....+|. .+.+ ++
T Consensus 27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 788888654322 111 222221 347999999766432 11111222200 11123443 4556 89
Q ss_pred CCCEEEEeeEEEcchhH-HHHHhcCCccceeeeccCC
Q 014064 166 SLRSLTLCAVNVTGEVV-EFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 166 ~L~~L~L~~~~~~~~~l-~~ll~~cp~Le~L~L~~~~ 201 (431)
+|++|.|.. .++. + ...+.+|++|+.|.+.+..
T Consensus 102 ~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 102 TLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp TCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCSS
T ss_pred CCcEEECCc-cccc--hhHHHhhcCcccceEEcCCCC
Confidence 999999976 3321 1 1235789999999997653
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.11 E-value=0.0015 Score=57.11 Aligned_cols=59 Identities=8% Similarity=0.046 Sum_probs=31.8
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
+.++.|.|.+..++.-.-...+..++.|+.|.|.++. ++.+.- -..+++|+.|.+.++.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc
Confidence 4567777777655432112235667777777777764 222211 1233556666665543
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.07 E-value=0.0027 Score=63.82 Aligned_cols=178 Identities=9% Similarity=-0.002 Sum_probs=104.1
Q ss_pred HhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCC
Q 014064 124 AIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDL 203 (431)
Q Consensus 124 ~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~ 203 (431)
+...+++.|++....-. .+ |..+ +++|++|.|.+..++. +. ..+++|+.|.|.++..
T Consensus 56 C~~~~L~~L~Ls~n~L~-----~l----------p~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l- 112 (571)
T 3cvr_A 56 CLINQFSELQLNRLNLS-----SL----------PDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRL- 112 (571)
T ss_dssp HHHTTCSEEECCSSCCS-----CC----------CSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCC-
T ss_pred cccCCccEEEeCCCCCC-----cc----------CHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCC-
Confidence 33457888887654321 13 3322 4899999999988763 32 5589999999998853
Q ss_pred ceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCc
Q 014064 204 LSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL 283 (431)
Q Consensus 204 ~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l 283 (431)
+.+.... .+|+.|.++++. +..+.-..++|+.|+++++.+...-..+++|+.+.+..+.... +. . +. ++|
T Consensus 113 ~~ip~l~--~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp---~-l~--~~L 182 (571)
T 3cvr_A 113 STLPELP--ASLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LP---E-LP--ESL 182 (571)
T ss_dssp SCCCCCC--TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---C-CC--TTC
T ss_pred CCcchhh--cCCCEEECCCCc-CCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cc---h-hh--CCC
Confidence 3222211 389999999876 3333225678999998887553222256678888777544331 11 1 11 688
Q ss_pred eEEEeeeceeeecccccccCCCc-------cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064 284 KTLELDGCNEVFAQFSQREFPKL-------MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342 (431)
Q Consensus 284 ~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~ 342 (431)
+.|.++.+. +. .+|....+| +.|.|+.+.- . .+..-+..+++|+.|++...
T Consensus 183 ~~L~Ls~N~-L~--~lp~~~~~L~~~~~~L~~L~Ls~N~l--~---~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 183 EALDVSTNL-LE--SLPAVPVRNHHSEETEIFFRCRENRI--T---HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp CEEECCSSC-CS--SCCCCC--------CCEEEECCSSCC--C---CCCGGGGGSCTTEEEECCSS
T ss_pred CEEECcCCC-CC--chhhHHHhhhcccccceEEecCCCcc--e---ecCHHHhcCCCCCEEEeeCC
Confidence 888887776 33 233312244 5555543211 1 12233334778888877554
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.01 E-value=0.00044 Score=59.39 Aligned_cols=149 Identities=16% Similarity=0.125 Sum_probs=73.3
Q ss_pred CCCCEEEEeeEEEcch-----hHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEE
Q 014064 165 KSLRSLTLCAVNVTGE-----VVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 239 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~-----~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L 239 (431)
++++.+.+..+.+.+. .+...+..++.|+.|.+.++. ++.+.....+++|+.|.+.++. +..+.
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l~--------- 86 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIE--------- 86 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSCS---------
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-ccccc---------
Confidence 4555555555554432 244467889999999998874 2222211234677777777664 22110
Q ss_pred EEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc---ccccCCCccEEEEEEeec
Q 014064 240 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAA 316 (431)
Q Consensus 240 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 316 (431)
-.+..+++|+.+.+..+.... . .-+..+++|+.|.++... +.... ....+++|++|.+..+.-
T Consensus 87 --------~~~~~~~~L~~L~L~~N~l~~-l----~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 87 --------NLDAVADTLEELWISYNQIAS-L----SGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --------SHHHHHHHCSEEEEEEEECCC-H----HHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred --------chhhcCCcCCEEECcCCcCCc-C----CccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 001122344444444332221 1 112345566777776655 32211 111256666666643211
Q ss_pred Ccc--c----HHHHHHHHhhCCCcceEE
Q 014064 317 NQE--T----LLGLSFIMKACPFLEKLV 338 (431)
Q Consensus 317 ~~~--~----~~~l~~ll~~~p~L~~L~ 338 (431)
... . .......+..+|+|+.|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC
Confidence 000 0 112345678899999875
No 129
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.95 E-value=0.016 Score=58.66 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEE---E-eC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SA 233 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~---i-~a 233 (431)
.+.++++|++|.|+++.++.-. ...+.++++|+.|.|.++. ++.+.. -..+++|++|.+.++. +..+. + ..
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L 147 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL 147 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcC
Confidence 5678899999999988664310 1235778999999999885 333321 2356889999998875 33322 2 24
Q ss_pred CceeEEEEeceeee-----eecCCCCCceeEEEEee
Q 014064 234 PNLLSFKYIGQDIN-----LHVGSLPQLVDVVFHVT 264 (431)
Q Consensus 234 p~L~~L~~~~~~~~-----~~~~~~~~L~~l~i~~~ 264 (431)
++|++|++.+..+. ..++.+++|+.+.+..+
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 77888888766432 23455777887777644
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=95.70 E-value=0.0042 Score=58.71 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=54.6
Q ss_pred CCCCEEEEeeEEEcchhHHHHHh-cCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIH-NCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL 237 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~ 237 (431)
++++.|.|++..+++-.- ..+. ++++|+.|.|.++.. +.+. .-..+++|+.|.++++. +..+.- ..++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 345556655554432111 1122 555666666655532 2111 01133555555555544 333321 125566
Q ss_pred EEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhh---ccCCCceEEEeeece
Q 014064 238 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIV---SYLPQLKTLELDGCN 292 (431)
Q Consensus 238 ~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~---~~~~~l~~L~l~~~~ 292 (431)
.|.+.+..+. ..+.++++|+.+.+..+.....-. .++ ..+++|+.|+++...
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV---ELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG---GGTC----CTTCCEEECCSSC
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH---HHhcCcccCCcCCEEECCCCC
Confidence 6666555332 124456666666665433221000 112 456677777776655
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.48 E-value=0.015 Score=54.45 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=49.8
Q ss_pred CCCCEEEEeeEEEcchhHH-HHHhcCCccceeeeccCCCCceeeee--cCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064 165 KSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI----SAPNLL 237 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~i----~ap~L~ 237 (431)
+++++|.|.+..++. +. ..++++++|+.|.|.++...+.+... ..+++++++.+..+..+..+.- ..++|+
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 678888888876642 11 23567888888888887654443211 2345666666665555555531 247888
Q ss_pred EEEEeceee
Q 014064 238 SFKYIGQDI 246 (431)
Q Consensus 238 ~L~~~~~~~ 246 (431)
+|.+.+..+
T Consensus 108 ~L~l~~n~l 116 (350)
T 4ay9_X 108 YLLISNTGI 116 (350)
T ss_dssp EEEEEEECC
T ss_pred ccccccccc
Confidence 888877644
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.16 E-value=0.0041 Score=62.58 Aligned_cols=102 Identities=19% Similarity=0.254 Sum_probs=54.9
Q ss_pred CCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCceeEEEEece
Q 014064 166 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 244 (431)
Q Consensus 166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~ 244 (431)
.|+.|.|++..+++ +.. +..+++|+.|.|.++.-. .+ .....+++|+.|.++++. +..+
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~l--------------- 501 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENV--------------- 501 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCC---------------
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCC---------------
Confidence 57888888776654 333 677788888888877432 21 111234666666666554 2211
Q ss_pred eeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 245 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 245 ~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
+ .++.+++|+.+.+..+...+.. ....+..+++|+.|.+++..
T Consensus 502 --p-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 502 --D-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp --G-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSG
T ss_pred --c-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEEEecCCc
Confidence 1 2344555555555533222110 01334567777777776665
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=95.09 E-value=0.012 Score=50.03 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=43.5
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCCceeEE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLSF 239 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~L 239 (431)
++|++|.|.+..++.-.-..++...+.|+.|.|.++...... ..-..+++|+.|.++++. +..+.- ..++|++|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence 478888888877654322224567888888888877432110 111234667777776654 333221 12445555
Q ss_pred EEece
Q 014064 240 KYIGQ 244 (431)
Q Consensus 240 ~~~~~ 244 (431)
++.+.
T Consensus 108 ~L~~N 112 (192)
T 1w8a_A 108 NLYDN 112 (192)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55444
No 134
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.04 E-value=0.0045 Score=52.44 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=13.9
Q ss_pred hHHHHHhcCCccceeeeccC
Q 014064 181 VVEFFIHNCPLLENLRITQS 200 (431)
Q Consensus 181 ~l~~ll~~cp~Le~L~L~~~ 200 (431)
.+..++..++.|++|.|.+|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n 46 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNI 46 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTC
T ss_pred HHHHHHhcCCCCCEEEecCC
Confidence 45666677777777777766
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.00 E-value=0.0078 Score=52.44 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=58.6
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA 233 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~a 233 (431)
.+.++++|+.|.|.+..++.- ....+.++++|+.|.|.++.. +.+.- -..+++|+.|.+.++. +..+.- ..
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l 127 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDL 127 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCC
Confidence 456789999999998876532 122367789999999988753 22211 1234778888887765 332211 13
Q ss_pred CceeEEEEeceeeee----ecCCCCCceeEEEE
Q 014064 234 PNLLSFKYIGQDINL----HVGSLPQLVDVVFH 262 (431)
Q Consensus 234 p~L~~L~~~~~~~~~----~~~~~~~L~~l~i~ 262 (431)
++|+.|++.+..+.. .+..+++|+.+.+.
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 566666666553321 13334455555444
No 136
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=94.85 E-value=0.0077 Score=52.84 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=44.3
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
..+.++++|++|.|.+..+..- -...+.++++|+.|.|.++. ++.+.- -..+++|+.|.+.++.
T Consensus 58 ~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 58 GVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc
Confidence 3567889999999999877432 12346789999999999884 332211 1245788888887765
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.70 E-value=0.0024 Score=60.71 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
++|++|+|+++.+++..+..+...+++|+.|+|.+|.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~ 137 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS 137 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence 5666777766666665555555556666777776663
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=94.53 E-value=0.011 Score=51.56 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=42.1
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~ 224 (431)
.+.++++|++|.|.+..+++-. ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++.
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred hhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 3568899999999988765321 123678899999999988532211 111234677777777664
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.81 E-value=0.039 Score=55.40 Aligned_cols=151 Identities=14% Similarity=0.117 Sum_probs=84.7
Q ss_pred CCCCCCCCCEEE-EeeEEEc--------chhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE
Q 014064 160 GLSGIKSLRSLT-LCAVNVT--------GEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE 230 (431)
Q Consensus 160 ~~~~~~~L~~L~-L~~~~~~--------~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~ 230 (431)
.+.++++|+.|. +....+. +..+..+- ...|+.|.|.++.- +.+.-...+++|+.|.++++. +..+
T Consensus 404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~-l~~l- 478 (567)
T 1dce_A 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNR-LRAL- 478 (567)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSC-CCCC-
T ss_pred HHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCCCC-CCCcCccccccCcEeecCccc-cccc-
Confidence 345678888887 4433221 11122221 23689999998843 222112334667777776654 2211
Q ss_pred EeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCcc
Q 014064 231 ISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM 307 (431)
Q Consensus 231 i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~ 307 (431)
+-.++.+++|+.+.+..+...+ + .-+..+++|+.|.++... +.....|.. +++|+
T Consensus 479 ----------------p~~~~~l~~L~~L~Ls~N~l~~-l----p~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 479 ----------------PPALAALRCLEVLQASDNALEN-V----DGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp ----------------CGGGGGCTTCCEEECCSSCCCC-C----GGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred ----------------chhhhcCCCCCEEECCCCCCCC-C----cccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCC
Confidence 1234566777777766443332 1 235788999999998876 433221333 67888
Q ss_pred EEEEEEeecCcccHHHHHHHHhhCCCcceEE
Q 014064 308 NLNISFTAANQETLLGLSFIMKACPFLEKLV 338 (431)
Q Consensus 308 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~ 338 (431)
.|.|+.+.-. ........++..+|+|+.|.
T Consensus 537 ~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 537 LLNLQGNSLC-QEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECTTSGGG-GSSSCTTHHHHHCTTCSEEE
T ss_pred EEEecCCcCC-CCccHHHHHHHHCcccCccC
Confidence 8887543211 11112446778899999985
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=93.77 E-value=0.025 Score=48.10 Aligned_cols=106 Identities=15% Similarity=0.086 Sum_probs=59.2
Q ss_pred CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064 164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY 241 (431)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~ 241 (431)
+++|++|.|.+..++. +...+.++++|+.|.|.++.. +.+.- -..+++|+.|.++++. +..+.-
T Consensus 30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~---------- 95 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR-LRCIPP---------- 95 (193)
T ss_dssp CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCBCCT----------
T ss_pred CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCCEEECCCCc-cCEeCH----------
Confidence 3689999999887753 224577889999999988753 22211 1234667777766654 222211
Q ss_pred eceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 242 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 242 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
..+.++++|+.+.+..+...... ...+..+++|+.|.+.+.+
T Consensus 96 ------~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 96 ------RTFDGLKSLRLLSLHGNDISVVP---EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSSC
T ss_pred ------HHhCCCCCCCEEECCCCCCCeeC---hhhhhcCccccEEEeCCCC
Confidence 11334455555554433221100 0334567778888877665
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.74 E-value=0.042 Score=46.33 Aligned_cols=122 Identities=19% Similarity=0.192 Sum_probs=73.8
Q ss_pred HHhhhccCCCceEEEeeec-eeeeccc---cc---ccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccc
Q 014064 273 IGSIVSYLPQLKTLELDGC-NEVFAQF---SQ---REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG 345 (431)
Q Consensus 273 ~~~~~~~~~~l~~L~l~~~-~~~~~~~---~~---~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~ 345 (431)
+...+...++|+.|.++.+ . +.... +. ...++|++|.|+.+.-.......+...+...++|++|++....
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-- 104 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-- 104 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC--
T ss_pred HHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc--
Confidence 3467778888888888776 4 33211 11 1146788888765433333445577888899999999986532
Q ss_pred cccCCCCccc--c-cCccCCccEEEE--eeee-cCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064 346 RRIGKKRHQI--S-KHSHQHLKLVEL--QGFN-GREIDFELAFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 346 ~~~~~~~~~~--~-~~~~~~L~~v~i--~~~~-g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 400 (431)
.++.|... . -....+|+.+.+ .+-. |.+....+++ .+++.+.|+++.+....
T Consensus 105 --i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 --ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp --CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred --CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence 22222111 1 123467999999 4433 3333344544 55666889999987654
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=93.30 E-value=0.55 Score=44.05 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=70.7
Q ss_pred cCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc---cc-ccCCCccEEEEEEeec---CcccHH
Q 014064 250 VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQ-REFPKLMNLNISFTAA---NQETLL 322 (431)
Q Consensus 250 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~-~~~~~L~~L~l~~~~~---~~~~~~ 322 (431)
+..+|+|+++.+..+.... + .. + .+++|++|.+..+. +.... +. ..+++|++|+|..... ......
T Consensus 168 l~~~P~L~~L~L~g~~~l~-l---~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS-I---GK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB-C---CS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HhcCCCCcEEEEeCCCCce-e---cc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3467888888887431110 0 01 1 36788888887665 33221 11 1378888888754211 111122
Q ss_pred HHHHHHh--hCCCcceEEEEeeccccccCCCC--cccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEe
Q 014064 323 GLSFIMK--ACPFLEKLVLQIWNNGRRIGKKR--HQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKP 398 (431)
Q Consensus 323 ~l~~ll~--~~p~L~~L~i~~~~~~~~~~~~~--~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~ 398 (431)
.+..++. .+|+|+.|.+....-. +.+ .+-....+++|+.+.+..-.-++.....+-.-+++.+.|+++.+..
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~----~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQ----NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTH----HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCc----hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 3333443 5788888888653211 000 0001224578888888542222211111111235678888888864
Q ss_pred C
Q 014064 399 S 399 (431)
Q Consensus 399 ~ 399 (431)
+
T Consensus 317 n 317 (362)
T 2ra8_A 317 N 317 (362)
T ss_dssp B
T ss_pred C
Confidence 4
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=92.88 E-value=0.031 Score=46.53 Aligned_cols=59 Identities=17% Similarity=0.035 Sum_probs=35.5
Q ss_pred CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
+++|++|.|.+..+++- ....+..++.|+.|.+.++.- +.+.- -..+++|+.|.+.++.
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCC
Confidence 37888888888766531 122356778888888887742 22211 1234666777666554
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=92.14 E-value=0.039 Score=46.84 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 158 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 158 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
|..+.++++|++|.|.+..++.-. ...+.+++.|+.|.|.++.. +.+.- -..+++|+.|.+.++.
T Consensus 47 p~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 47 PKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCcc-CEeCHHHhCCCCCCCEEECCCCC
Confidence 335568899999999988776421 12367889999999988753 22211 1234677777776654
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=92.06 E-value=0.045 Score=45.50 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=42.2
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee-eecCCCCcceEEeeccC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~ 224 (431)
.+.++++|++|.|.+..++.- ....+..++.|+.|.+.++....... ....+++|+.|.+.++.
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred HhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence 346789999999998877532 12335789999999999875322111 11234677777777654
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=91.99 E-value=0.025 Score=58.72 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEE---EeCC
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE---ISAP 234 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~---i~ap 234 (431)
..+..+++|+.|.|.+..+.. +..-+..++.|+.|.|.++... .+ .-...+++|+.|.++++. +..+. -..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 345677888888888876652 2222346788888888877532 21 111245778888888776 33331 1246
Q ss_pred ceeEEEEeceee---eeecCCCCCceeEEEEeecCc
Q 014064 235 NLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMV 267 (431)
Q Consensus 235 ~L~~L~~~~~~~---~~~~~~~~~L~~l~i~~~~~~ 267 (431)
+|++|.+.++.+ +..++.+++|+.+.+..+...
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 788888877643 334677888888888766544
No 147
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=91.98 E-value=0.072 Score=50.05 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=70.2
Q ss_pred CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eCCce
Q 014064 163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNL 236 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L 236 (431)
++++|++|.|.+..++.-. ...+..+++|+.|.|.++. ++.+.- -..+++|+.|.+.++. +..+.- ..++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred cccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence 6788888888877654321 1235677888888888775 332211 1245778888887765 443321 24778
Q ss_pred eEEEEeceeeee----ec---CCCCCceeEEEEeecCcchhhHHHhhhccCCC--ceEEEeeece
Q 014064 237 LSFKYIGQDINL----HV---GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQ--LKTLELDGCN 292 (431)
Q Consensus 237 ~~L~~~~~~~~~----~~---~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~--l~~L~l~~~~ 292 (431)
+.|.+.+..+.. .+ ..+++|+.+.+..+....... ..+..++. ++.|.+.+.+
T Consensus 139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL---TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH---HHHHHSCHHHHTTEECCSSC
T ss_pred CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH---HHhhhccHhhcceEEecCCC
Confidence 888887764421 12 457788888777543321100 12233443 3566665544
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=91.90 E-value=0.27 Score=46.90 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=9.6
Q ss_pred HhcCCccceeeecc
Q 014064 186 IHNCPLLENLRITQ 199 (431)
Q Consensus 186 l~~cp~Le~L~L~~ 199 (431)
+.+|++|+.+.+.+
T Consensus 176 F~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 176 FYYCYNLKKADLSK 189 (401)
T ss_dssp TTTCTTCCEEECTT
T ss_pred hhCcccCCeeecCC
Confidence 45677777777754
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=91.72 E-value=0.071 Score=45.06 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
+.++++|++|.|.+..+++- ....+.+.+.|+.|.|.++.. +.+.. -..+++|+.|.+.++.
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEECSSSSTTCTTCCEEECCSSC
T ss_pred cccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc
Confidence 56889999999999887642 123367889999999998853 22211 2345889999998875
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=90.44 E-value=0.066 Score=55.54 Aligned_cols=105 Identities=15% Similarity=0.021 Sum_probs=68.0
Q ss_pred HHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE---EeCCceeEEEEeceee---eeecCCCCCc
Q 014064 183 EFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE---ISAPNLLSFKYIGQDI---NLHVGSLPQL 256 (431)
Q Consensus 183 ~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~~~~~---~~~~~~~~~L 256 (431)
...+..++.|+.|.|.++.......-...+++|+.|.+.++. +..+. -..++|+.|+++++.+ +-.++.+++|
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 445778899999999988643211111245889999999886 44332 1357899999988754 3346678889
Q ss_pred eeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064 257 VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN 292 (431)
Q Consensus 257 ~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 292 (431)
+.+.+..+... .+..-+..+++|+.|.+++..
T Consensus 296 ~~L~L~~N~l~----~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 296 KYFYFFDNMVT----TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SEEECCSSCCC----CCCSSTTSCTTCCCEECTTSC
T ss_pred CEEECCCCCCC----ccChhhhcCCCccEEeCCCCc
Confidence 98888754332 111235778899999997765
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=89.73 E-value=0.11 Score=43.19 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=36.0
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
++|++|.|.+..+.+- ....+.++++|+.|.|.++. ++.+.- -..+++|+.|.+.++.
T Consensus 33 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence 7888998888876542 12336678888888888774 322211 1234566666666543
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=87.09 E-value=0.24 Score=40.77 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=34.2
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS 238 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~ 238 (431)
++|++|.|.+..++.-. ...+.++++|+.|.|.++.. +.+.- -..+++|+.|.+.+.. +..+.- ..++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence 55555555555443210 11234455555555555431 11110 1123455555555443 222211 1356666
Q ss_pred EEEecee
Q 014064 239 FKYIGQD 245 (431)
Q Consensus 239 L~~~~~~ 245 (431)
|.+.+..
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 6666553
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=86.61 E-value=0.24 Score=40.79 Aligned_cols=62 Identities=13% Similarity=0.025 Sum_probs=30.6
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeecc
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFC 223 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c 223 (431)
.+.++++|++|.|.+..++.- -...+.+.++|+.|.|.++.- +.+. .-..+++|+.|.+.+.
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 49 VFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred hhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc-CEeCHHHhcCCCCCCEEEeCCC
Confidence 345566666666666655421 112245566666666665532 1111 1123355666666554
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=86.08 E-value=0.31 Score=40.31 Aligned_cols=64 Identities=11% Similarity=0.011 Sum_probs=42.2
Q ss_pred CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064 159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY 224 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~ 224 (431)
..+.++++|+.|.|.+..++.- -...+..+++|+.|.|.++.- +.+.- -..+++|+.|.+.+.+
T Consensus 51 ~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 51 GVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred HHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence 4567899999999999877642 122357889999999998753 22211 1234566666666543
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=83.16 E-value=0.39 Score=44.49 Aligned_cols=65 Identities=20% Similarity=0.117 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCEEEEee-EEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccC
Q 014064 157 SGCGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCY 224 (431)
Q Consensus 157 lp~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~ 224 (431)
+|. +..+++|++|.|.+ ..++.- ....+.++++|+.|.|.++. +..+. .-..+++|+.|.+++..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence 444 56667777777774 444321 11225667777777777764 33221 11234667777776654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=82.68 E-value=0.36 Score=43.12 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=25.3
Q ss_pred CCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCC
Q 014064 163 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 163 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
++|+|++|.|++..+++ ..+..++..+|+|+.|.|.+..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 46777777777776654 2344556667777777776653
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=82.07 E-value=1.6 Score=40.08 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=21.0
Q ss_pred CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP 201 (431)
Q Consensus 165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~ 201 (431)
.+++.+.+.+. +...++..+...|+.|+.|.|.++.
T Consensus 202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~ 237 (329)
T 3sb4_A 202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN 237 (329)
T ss_dssp GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC
Confidence 34444545443 2233455555568888888888653
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=80.34 E-value=0.61 Score=44.15 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCCCCCCCCEEEEeeE--EEcchhHHHHHhcCCccceeeec
Q 014064 159 CGLSGIKSLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRIT 198 (431)
Q Consensus 159 ~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~ 198 (431)
..+.++++|+.+.|... .+.+. .+.+|+.|+.+.+.
T Consensus 156 ~aF~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLP 193 (394)
T ss_dssp TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCC
T ss_pred hhhcccCCCcEEecCCccceeccc----cccCCCCceEEEcC
Confidence 34667888998888532 22222 35678888888774
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=75.39 E-value=1.5 Score=37.03 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=76.6
Q ss_pred HHhhhccCCCceEEEeeeceeeeccc---ccc---cCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeecccc
Q 014064 273 IGSIVSYLPQLKTLELDGCNEVFAQF---SQR---EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGR 346 (431)
Q Consensus 273 ~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~---~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~ 346 (431)
+..++..-+.|+.|.++....+.... +.. .-..|+.|.|..+.-++.....+...|+.-..|++|.|....
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~--- 109 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF--- 109 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB---
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc---
Confidence 33666777888888887541122111 111 145788888865544434455688899999999999996542
Q ss_pred ccCCCCcccc---cCccCCccEEEEee----eecCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064 347 RIGKKRHQIS---KHSHQHLKLVELQG----FNGREIDFELAFYVFENATMLEKMIIKPSG 400 (431)
Q Consensus 347 ~~~~~~~~~~---~~~~~~L~~v~i~~----~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~ 400 (431)
.++.|..-. -.....|+.+.+.+ .-|...+.++++.+-.| +.|.++.+....
T Consensus 110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~ 168 (197)
T 1pgv_A 110 -LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS 168 (197)
T ss_dssp -CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred -CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence 222222111 12345699999964 33666777888877666 779888887554
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=69.16 E-value=1.7 Score=40.08 Aligned_cols=63 Identities=22% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee-cCCCCcceEEeeccC
Q 014064 160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCY 224 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~-~~~~~L~~L~l~~c~ 224 (431)
.+.++++|+.|.|++..++.- ....+.++++|+.|.|.++.. ..+.-. ....+|+.|.+.+..
T Consensus 51 ~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp GSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC-SCCCSTTTCSCCCCEEECCSSC
T ss_pred HhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc-ceeCHHHcccCCceEEEeeCCC
Confidence 456889999999998876542 123467889999999998753 222100 011338888887643
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=68.51 E-value=1.9 Score=38.36 Aligned_cols=62 Identities=26% Similarity=0.213 Sum_probs=33.3
Q ss_pred hhccCCCceEEEeeeceeeecccccccCC--CccEEEEEEeecCc-c--cHHHHHHHHhhCCCcceEE
Q 014064 276 IVSYLPQLKTLELDGCNEVFAQFSQREFP--KLMNLNISFTAANQ-E--TLLGLSFIMKACPFLEKLV 338 (431)
Q Consensus 276 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~-~--~~~~l~~ll~~~p~L~~L~ 338 (431)
++..+++|+.|.|+... +....-...+. +|++|.|..+.... . .......++..+|+|+.|+
T Consensus 191 ~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred HHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 34567777777776655 33221111122 67777664332111 0 1122456888999998875
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=55.18 E-value=9.1 Score=35.87 Aligned_cols=71 Identities=20% Similarity=0.088 Sum_probs=34.2
Q ss_pred CceeEEEEeceee---eeecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEeeeceeeecccccccCCCccEE
Q 014064 234 PNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNL 309 (431)
Q Consensus 234 p~L~~L~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L 309 (431)
.+|+.+.+..... ...+.++.+|+++.|.-. . ..+. .-+.+|++|+.+++.+.. ..... -....+|+.+
T Consensus 311 ~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s--v---~~I~~~aF~~C~~L~~i~~~~~~-~~~~~-~~~~~~L~~i 383 (394)
T 4gt6_A 311 ISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS--V---TKIPESAFSNCTALNNIEYSGSR-SQWNA-ISTDSGLQNL 383 (394)
T ss_dssp TTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT--C---CBCCGGGGTTCTTCCEEEESSCH-HHHHT-CBCCCCC---
T ss_pred CCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc--c---CEEhHhHhhCCCCCCEEEECCce-eehhh-hhccCCCCEE
Confidence 4455555433211 124667888888877411 1 1111 445788899998886654 11111 1114567766
Q ss_pred EE
Q 014064 310 NI 311 (431)
Q Consensus 310 ~l 311 (431)
.+
T Consensus 384 ~i 385 (394)
T 4gt6_A 384 PV 385 (394)
T ss_dssp --
T ss_pred Ee
Confidence 65
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=54.26 E-value=4.3 Score=38.41 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=40.8
Q ss_pred CCCCEEEEeeE--EEcchhHHHHHhcCCccceeeeccCCCC--ceeeee----cCCCCcceEEeeccCCcceEEE----e
Q 014064 165 KSLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRITQSPDL--LSLKVV----GSSIPLKCLDIQFCYSIKEIEI----S 232 (431)
Q Consensus 165 ~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~--~~l~i~----~~~~~L~~L~l~~c~~l~~i~i----~ 232 (431)
.+|+.+.|..- .+.. ..+.+|++|+.+.+.+.... ....+. ..|++|+.+.+.+ .+..+.- .
T Consensus 248 ~~L~~i~lp~~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~ 321 (401)
T 4fdw_A 248 SGITTVKLPNGVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGG 321 (401)
T ss_dssp CCCSEEEEETTCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTT
T ss_pred CCccEEEeCCCccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcC
Confidence 56666666321 1222 12456777777776543211 000111 1344555555432 1222211 1
Q ss_pred CCceeEEEEeceeee---eecCCCCCceeEEEEe
Q 014064 233 APNLLSFKYIGQDIN---LHVGSLPQLVDVVFHV 263 (431)
Q Consensus 233 ap~L~~L~~~~~~~~---~~~~~~~~L~~l~i~~ 263 (431)
+++|+.+.+...... ..+.++ +|+.+.+.-
T Consensus 322 c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 322 NRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp CCSCCEEEECTTCCEECTTSSSSS-CCCEEEECC
T ss_pred CCCccEEEECccccEEcHHhCCCC-CCCEEEEcC
Confidence 245555555433211 234566 777777663
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=52.47 E-value=12 Score=34.89 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=26.4
Q ss_pred CceeEEEEeceee---eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEE
Q 014064 234 PNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTL 286 (431)
Q Consensus 234 p~L~~L~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L 286 (431)
.+|+.+.+..... ...+.++++|+++.+.-. ....+ .-+..|++|+.+
T Consensus 343 ~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~--~~~~~---~~F~~c~~L~~I 393 (394)
T 4fs7_A 343 TSLSNINFPLSLRKIGANAFQGCINLKKVELPKR--LEQYR---YDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG--GGGGG---GGBCTTCEEEEE
T ss_pred CCCCEEEECccccEehHHHhhCCCCCCEEEECCC--CEEhh---heecCCCCCcEE
Confidence 5566666543321 124678999998887621 11111 224667777654
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=34.78 E-value=26 Score=32.59 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=59.7
Q ss_pred CCCCCCCCCEEEEeeE--EEcchhHHHHHhcCCccceeeeccCCCCceeeee--cCCCCcceEEeeccCCcceEEE----
Q 014064 160 GLSGIKSLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI---- 231 (431)
Q Consensus 160 ~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~i---- 231 (431)
.+.++.+|+.+.+-.. .+... .+.+|+.|+.+.+... ++.+.-. ..|.+|+.+.+-. ++..+.-
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT
T ss_pred eeeecccccEEecccccceecCc----ccccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhHhh
Confidence 4567888888887532 23222 2567889988887531 2221111 1345666666532 1222221
Q ss_pred eCCceeEEEEeceee---eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeec
Q 014064 232 SAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGC 291 (431)
Q Consensus 232 ~ap~L~~L~~~~~~~---~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 291 (431)
.+.+|+++.+..... ...+.++.+|+++.+.-.. ... .-+..+.+|+.+.+...
T Consensus 332 ~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~-----~~~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 332 GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR-----SQW-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH-----HHH-HTCBCCCCC--------
T ss_pred CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce-----eeh-hhhhccCCCCEEEeCCC
Confidence 235677777654322 2357789999988876211 111 33466778888877443
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=28.35 E-value=15 Score=33.89 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=20.9
Q ss_pred ecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEee
Q 014064 249 HVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELD 289 (431)
Q Consensus 249 ~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~ 289 (431)
.+.++++|+++.+.-.... .+. ..+.+|.+|+.+++.
T Consensus 281 aF~~c~~L~~i~l~~~~i~----~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE----TLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC----EECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccccc----eehhhhhcCCCCCCEEEcC
Confidence 3556777877776421110 000 345677888888774
No 167
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=26.17 E-value=2.4e+02 Score=22.55 Aligned_cols=46 Identities=4% Similarity=-0.029 Sum_probs=32.5
Q ss_pred cCccCCccEEEEeeee-cCc----hhHHHHHHHHhcCcccccEEEEeCCCc
Q 014064 357 KHSHQHLKLVELQGFN-GRE----IDFELAFYVFENATMLEKMIIKPSGSR 402 (431)
Q Consensus 357 ~~~~~~L~~v~i~~~~-g~~----~e~~l~~~ll~~a~~Le~m~i~~~~~~ 402 (431)
+..-..++.|+|.+.- -.. +-++|.+.++++|+.++++.+.++.+.
T Consensus 29 ~YL~~~~~~I~IeDPYIR~~hQi~NfvrF~Ellvk~~~~~~~I~L~T~~d~ 79 (163)
T 4a5z_A 29 EYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKRPCKVKTIHLLTSLDE 79 (163)
T ss_dssp GGCCTTCCEEEEECSCCCSHHHHHHHHHHHHHHHC--CCCCEEEEEECCCC
T ss_pred HHHhCCceEEEEECCccccHHHHHHHHHHHHHHHhcCCCccEEEEEeCCcc
Confidence 3444478899998833 333 447889999999999999999988753
Done!