BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014065
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 184/394 (46%), Gaps = 22/394 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
+TY++++ L R A L A GI GD VAL PN+VEF +F +
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
E F LSDS SK+++ A ++ + + ADS L L + +D
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS-LAERLRSAAADE 162
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
A+ +D ++TSGTT PKGV T ++ ++ S+ S + D ++ LP
Sbjct: 163 PAVECGGDDN---LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 219
Query: 211 LFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV + +F A+ W +++ AVP I + R
Sbjct: 220 MFHVAALTTVIFSAMRGVTLISMP---QFDATKVWSLIVEERVCIGGAVPAILNFM--RQ 274
Query: 271 VAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA----THLMSSNPL 325
V + E P R+ + A + P L ++ A V++ YA+TE+ T L+S
Sbjct: 275 VPEFAELDAPDFRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---- 329
Query: 326 PEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
ED K GS GR + ++A+ + GV +E G +GEV I+ + K Y N PEA + AF
Sbjct: 330 -EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 387
Query: 385 LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
GWF TGDIG D +GYL++ R+K++I GG
Sbjct: 388 DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGE 421
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 176/381 (46%), Gaps = 22/381 (5%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
+TY++++ L R A L A GI GD VAL PN+VEF +F +
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
E F LSDS SK+++ A ++ + + ADS L L + +D
Sbjct: 90 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADS-LAERLRSAAADE 148
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
A+ +D ++TSGTT PKGV T ++ ++ S+ S + D ++ LP
Sbjct: 149 PAVECGGDDN---LFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLP 205
Query: 211 LFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
+FHV + +F A+ W +++ AVP I + R
Sbjct: 206 MFHVAALTTVIFSAMRGVTLISMP---QFDATKVWSLIVEERVCIGGAVPAILNFM--RQ 260
Query: 271 VAK-PEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA----THLMSSNPL 325
V + E P R+ + A + P L ++ A V++ YA+TE+ T L+S
Sbjct: 261 VPEFAELDAPDFRYFITGGAPM-PEALIKIYAAKNIEVVQGYALTESCGGGTLLLS---- 315
Query: 326 PEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF 384
ED K GS GR + ++A+ + GV +E G +GEV I+ + K Y N PEA + AF
Sbjct: 316 -EDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 385 LFGWFHTGDIGYFDSDGYLHL 405
GWF TGDIG D +GYL++
Sbjct: 374 DNGWFRTGDIGEIDDEGYLYI 394
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 187/414 (45%), Gaps = 17/414 (4%)
Query: 9 LLNQVIDQFSS--KRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV 66
L ++ D+ K A+ + ++Y+ + R A+ LVA G+ GD VA +V
Sbjct: 5 LFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV 64
Query: 67 EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
E ++++LA +R YT E +++++D+E K+++ +K+
Sbjct: 65 EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-- 122
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
AT L D +L+ A + + + + D+A L+TSGTT R KG L+ +NL
Sbjct: 123 -ATVETLGPDGRGSLTDAAAGASEAFAT-IDRGADDLAAILYTSGTTGRSKGAXLSHDNL 180
Query: 187 AASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQ 246
A++ + ++ T D + LP++H HG+ +F
Sbjct: 181 ASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLP--KFDPDKILD 238
Query: 247 DMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP 306
+ AT VPT + +L E FI S SA L G
Sbjct: 239 --LXARATVLXGVPTFYTRLLQSPRLTKETTGHXRLFI-SGSAPLLADTHREWSAKTGHA 295
Query: 307 VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCI 364
VLE Y TE T+ +SNP DG PG+VG + G + D E G G G + +
Sbjct: 296 VLERYGXTE-TNXNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEV 352
Query: 365 RGPNVTKGYKNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
+GPNV KGY PE KS F G+F TGD+G D GY+H++GR K+L+ GG
Sbjct: 353 KGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGG 406
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 170/406 (41%), Gaps = 20/406 (4%)
Query: 17 FSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI 76
F + A V G LT+ ER AS L+ G++ GD VA+ N E + + AV
Sbjct: 19 FPDRTAFMVDG-VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVA 77
Query: 77 RXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDAD 136
DE F L D +++ + L + D
Sbjct: 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS 137
Query: 137 SELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSV 196
SDT S +D + +HT+ RP+G ++Q NL + S++
Sbjct: 138 GPFA-PFKDLASDT-PFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA 195
Query: 197 YKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
++LTE+D + +LPLFHV G+ +F + +D+ + T
Sbjct: 196 WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA---KFDPAQAARDIEAHKVTVM 252
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAF-GAPVLEAYAMTE 315
+ +LD+ A P +L +R+ + P + R E A + +E
Sbjct: 253 AEFAPMLGNILDQ--AAPA----QLASLRAVTGLDTPETIERFEATCPNATFWATFGQSE 306
Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
+ L + P + +P S GRP+ + +A++D P G GE+ +RGP V KGY
Sbjct: 307 TSGLSTFAPYRD----RPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYW 362
Query: 375 NNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRI--KELINRGGN 418
NN A + AF GW HTGD+G FD+DGYL GR KELI GG
Sbjct: 363 NNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGE 408
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 175/399 (43%), Gaps = 15/399 (3%)
Query: 22 ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXX 81
A+ + ++Y+ + R A+ LVA G+ GD VA +VE ++++LA +R
Sbjct: 20 AIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 82 XXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL 141
YT E +++++D+E +++ + + + T D LT
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP-DGRGSLTD 138
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
+ A + I + +D +A L+TSGTT R G L+ +NLA++ + ++ T
Sbjct: 139 AAAGASEAFATIDRGADD---LAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTP 195
Query: 202 SDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPT 261
D + LP++H HG+ F M + AT VPT
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPX--FDPDXILDLMAR--ATVLMGVPT 251
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
+ +L E +R S SA L G VLE Y MTE T++ +
Sbjct: 252 FYTRLLQSPRLTXETT-GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNT 309
Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEA 379
SNP DG PG+VG + G + D E G G G + + GPNV GY PE
Sbjct: 310 SNPY--DGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEX 367
Query: 380 NKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
S F G+F TGD+G D GY+H++GR +L+ GG
Sbjct: 368 TXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGG 406
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 172/390 (44%), Gaps = 15/390 (3%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y+ + R A+ LVA G+ GD VA +VE ++++LA +R YT
Sbjct: 29 ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
E +++++D+E +++ + + + T D LT + A +
Sbjct: 89 LHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP-DGRGSLTDAAAGASEAF 147
Query: 151 NAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLP 210
I + +D +A L+TSGTT R G L+ +NLA++ + ++ T D + LP
Sbjct: 148 ATIDRGADD---LAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALP 204
Query: 211 LFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRH 270
++H HG+ F M + AT VPT + +L
Sbjct: 205 IYHTHGLFVASNVTLFARGSMIFLPX--FDPDXILDLMAR--ATVLMGVPTFYTRLLQSP 260
Query: 271 VAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGP 330
E +R S SA L G VLE Y MTE T++ +SNP DG
Sbjct: 261 RLTXETT-GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNTSNPY--DGD 316
Query: 331 HKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFL-FG 387
PG+VG + G + D E G G G + + GPNV GY PE S F G
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDG 376
Query: 388 WFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
+F TGD+G D GY+H++GR +L+ GG
Sbjct: 377 FFITGDLGXIDERGYVHILGRGXDLVITGG 406
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 175/399 (43%), Gaps = 15/399 (3%)
Query: 22 ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXX 81
A+ + ++Y+ + R A+ LVA G+ GD VA +VE ++++LA +R
Sbjct: 20 AIETAAGDXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGV 79
Query: 82 XXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL 141
YT E +++++D+E +++ + + + T D LT
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGP-DGRGSLTD 138
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTE 201
+ A + I + +D +A L+TSGTT R G L+ +NLA++ + ++ T
Sbjct: 139 AAAGASEAFATIDRGADD---LAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTP 195
Query: 202 SDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPT 261
D + LP++H HG+ F M + AT VPT
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPX--FDPDXILDLMAR--ATVLMGVPT 251
Query: 262 IHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMS 321
+ +L E +R S SA L G VLE Y MTE T++ +
Sbjct: 252 FYTRLLQSPRLTXETT-GHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTE-TNMNT 309
Query: 322 SNPLPEDGPHKPGSVGRPV-GQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEA 379
SNP DG PG+VG + G + D E G G G + + GPNV GY PE
Sbjct: 310 SNPY--DGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEX 367
Query: 380 NKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
S F G+F TGD+G D GY+H++GR +L+ GG
Sbjct: 368 TXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGG 406
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 20/309 (6%)
Query: 123 LNISHATATLLDADSELTLSLAHSES------DTNAISKLTNDPSDVALFLHTSGTTSRP 176
L+ S + L D+EL +L E A+ + D D AL ++TSGTT P
Sbjct: 111 LSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPP 170
Query: 177 KGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXX 236
KG + + LA ++ + ++ T D V LPLFHVHG+
Sbjct: 171 KGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGL--VLGILGPLRRGGSVRHL 228
Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPE--PVYPKLRFIRSCSASLAPV 294
GRFS +++ AT VPT++ + + A PE R + S SA+L
Sbjct: 229 GRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVH 287
Query: 295 ILSRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVP 353
R+ A G V+E Y MTE LM+++ + DG + G+VG P+ G E+ +++E G P
Sbjct: 288 DHERIAAATGRRVIERYGMTET--LMNTS-VRADGEPRAGTVGVPLPGVELRLVEEDGTP 344
Query: 354 ---QEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGR- 408
+G + GE+ +RGPN+ Y N P+A +AF G+F TGD+ D DGY+ +VGR
Sbjct: 345 IAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRK 404
Query: 409 IKELINRGG 417
+LI GG
Sbjct: 405 ATDLIKSGG 413
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 182/418 (43%), Gaps = 30/418 (7%)
Query: 18 SSKRALSVSGKFDL-TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI 76
SSK L D+ TY+ + R AS L GI GDV+ L P++ EFV+ FL
Sbjct: 36 SSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGAS 95
Query: 77 RXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDAD 136
TP E + S +KLL+T A + S +D+
Sbjct: 96 HRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE---SDVKVMCVDSA 152
Query: 137 SELTLSLAH-SESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS---- 191
+ L + +++D N ++ P DV ++SGTT PKGV LT L SV+
Sbjct: 153 PDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVD 212
Query: 192 -NIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIK 250
+ ++Y +E D + VLP+FH++ + +F + + K
Sbjct: 213 GDNPNLYFHSE-DVILCVLPMFHIYALNSIMLCGLRVGAPILIMP--KFEIGSLLGLIEK 269
Query: 251 YNATWYTAVPTIHQIV-----LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305
Y + VP + + LD+H LR I+S A L + + F
Sbjct: 270 YKVSIAPVVPPVMMSIAKSPDLDKHDLS------SLRMIKSGGAPLGKELEDTVRAKFPQ 323
Query: 306 PVL-EAYAMTEATHLMSSNPLPEDGPH--KPGSVGRPV-GQEIAILD-EIGVPQEGGAKG 360
L + Y MTEA +++ P KPG+ G V E+ I+D E G G
Sbjct: 324 ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383
Query: 361 EVCIRGPNVTKGYKNNPEA-NKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
E+CIRG + KGY N+PEA +++ GW HTGDIGY D D L +V R+KELI G
Sbjct: 384 EICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKG 441
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/438 (25%), Positives = 189/438 (43%), Gaps = 34/438 (7%)
Query: 4 VTLIGLLNQVIDQFSSKRAL-SVSGKF------DLTYSRIHELVERAASRLVAAGINAGD 56
++L ++ ++F K A+ S KF + I E+ ++ AS + G+ G+
Sbjct: 19 ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGE 78
Query: 57 VVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXX 116
V + PN++++V A+ R Y E E L+DSE+ L+ +
Sbjct: 79 HVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENF 138
Query: 117 XXXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRP 176
K + + +S + + SE N N DVAL +T GTT P
Sbjct: 139 KPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENV---KVNPEEDVALIPYTGGTTGXP 195
Query: 177 KGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXX 236
KGV LT NLAA+ + L+ D+ V P FH
Sbjct: 196 KGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFH---SAEFGLVNLXVTVGNEYVVX 252
Query: 237 GRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVI 295
G F+ +++ KY T+ AVP ++++ + + + L+ + + +AP +
Sbjct: 253 GXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPAL 312
Query: 296 LSRL----EEAFGAPVL---EAYAMTEATHLMSSN-PLPEDGPHKPGSVGRPVGQEIAIL 347
+ +L E P L + + TEA +++N PL D G + ++ L
Sbjct: 313 VEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISL 372
Query: 348 D---EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG-----WFHTGDIGYFDS 399
+ E+GV G GE+ IRGPN+ KGY + N+ + + +F TGD+G+ D
Sbjct: 373 EDGRELGV----GESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE 428
Query: 400 DGYLHLVGRIKELINRGG 417
+G+LH R+KE+I G
Sbjct: 429 EGFLHFQDRVKEVIKYKG 446
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 166/409 (40%), Gaps = 32/409 (7%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
++TYS E+ R A + G+ +A+ N+++F + + Y
Sbjct: 84 NITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIY 143
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATL------LDADSELTLSL 143
E LS S+ ++ KL I L + S +
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIE 203
Query: 144 AHSESDTNAISKLTND---PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY-- 197
+H + N + + + AL +++SG+T PKGV LT N+ S+ + V+
Sbjct: 204 SHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGN 263
Query: 198 KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYT 257
++ + + V+P H GM RF F + + Y
Sbjct: 264 QIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMY---RFEEELFLRSLQDYKIQSAL 320
Query: 258 AVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEA 316
VPT+ + + L I S A LA + + + F P + + Y +TE
Sbjct: 321 LVPTLFSFFAKSTLVDKYDL-SNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTET 379
Query: 317 THLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCIRGPNVT 370
T + P D KPG+ G+ V +I LD +GV Q +GE+C++GP +
Sbjct: 380 TSAIIITPRGRD--DKPGACGKVVPFFSAKIVDLDTGKTLGVNQ----RGELCVKGPMIM 433
Query: 371 KGYKNNPEANKSAFLF--GWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
KGY NNPEA SA + GW H+GDI Y+D DGY +V R+K LI G
Sbjct: 434 KGYVNNPEAT-SALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKG 481
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY--KLTESDSTVIVLPLFHVHGMX 218
VAL +++SG+T PKGV LT N+ S+ + +Y +++ + + V+P H GM
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
+F TF + + Y T VPT+ I L++ +
Sbjct: 253 TTLGYLICGFRVVMLT---KFDEETFLKTLQDYKCTSVILVPTLFAI-LNKSELLNKYDL 308
Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
L I S A L+ + + F P V + Y +TE T + P +G KPG+ G
Sbjct: 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASG 365
Query: 338 RPVGQEIAILDEIGVPQEGGA--KGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDI 394
+ V A + ++ + G +GEVC++GP + KGY NNPEA K GW HTGDI
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDI 425
Query: 395 GYFDSDGYLHLVGRIKELINRGG 417
GY+D + + +V R+K LI G
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKG 448
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY--KLTESDSTVIVLPLFHVHGMX 218
VAL +++SG+T PKGV LT N+ S+ + +Y +++ + + V+P H GM
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
+F TF + + Y T VPT+ I L++ +
Sbjct: 253 TTLGYLICGFRVVMLT---KFDEETFLKTLQDYKCTSVILVPTLFAI-LNKSELLNKYDL 308
Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
L I S A L+ + + F P V + Y +TE T + P +G KPG+ G
Sbjct: 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASG 365
Query: 338 RPVGQEIAILDEIGVPQEGGA--KGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDI 394
+ V A + ++ + G +GEVC++GP + KGY NNPEA K GW HTGDI
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDI 425
Query: 395 GYFDSDGYLHLVGRIKELINRGG 417
GY+D + + +V R+K LI G
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKG 448
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 14/263 (5%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKS-VY--KLTESDSTVIVLPLFHVHGMX 218
VAL +++SG+T PKGV LT N+ S+ + +Y +++ + + V+P H GM
Sbjct: 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVY 278
+F TF + + Y T VPT+ I L++ +
Sbjct: 253 TTLGYLICGFRVVMLT---KFDEETFLKTLQDYKCTNVILVPTLFAI-LNKSELLNKYDL 308
Query: 279 PKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTEATHLMSSNPLPEDGPHKPGSVG 337
L I S A L+ + + F P V + Y +TE T + P +G KPG+ G
Sbjct: 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP---EGDDKPGASG 365
Query: 338 RPVGQEIAILDEIGVPQEGGA--KGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDI 394
+ V A + ++ + G +GEVC++GP + KGY NNPEA K GW HTGDI
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDI 425
Query: 395 GYFDSDGYLHLVGRIKELINRGG 417
GY+D + + +V R+K LI G
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKG 448
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 179/428 (41%), Gaps = 30/428 (7%)
Query: 12 QVIDQFSSKRALSVSGKFD--LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFV 69
Q I +F++K L ++G TYS +H + + A+ G+N DVV L PN EFV
Sbjct: 69 QNISEFATKPCL-INGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFV 127
Query: 70 IMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLT---------PAEGNXXXXXXX 120
+ FLA +TP E S +KL++T P + +
Sbjct: 128 LSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVC 187
Query: 121 SKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVP 180
N S +ELT S + + I + P DV ++SGTT PKGV
Sbjct: 188 IDDNESVPIPEGCLRFTELTQSTTEA---SEVIDSVEISPDDVVALPYSSGTTGLPKGVM 244
Query: 181 LTQNNLAASVSNI-----KSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXX 235
LT L SV+ ++Y D + VLP+FH++ +
Sbjct: 245 LTHKGLVTSVAQQVDGENPNLY-FHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP 303
Query: 236 XGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVI 295
+F + + + + T VP I + + + + +R ++S +A L +
Sbjct: 304 --KFEINLLLELIQRCKVTVAPMVPPI-VLAIAKSSETEKYDLSSIRVVKSGAAPLGKEL 360
Query: 296 LSRLEEAF-GAPVLEAYAMTEATHL--MSSNPLPEDGPHKPGSVGRPV-GQEIAILD-EI 350
+ F A + + Y MTEA + MS E P K G+ G V E+ I+D +
Sbjct: 361 EDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDT 420
Query: 351 GVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRI 409
G GE+CIRG + KGY NNP A GW HTGDIG D D L +V R+
Sbjct: 421 GDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRL 480
Query: 410 KELINRGG 417
KELI G
Sbjct: 481 KELIKYKG 488
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 43/414 (10%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
++TY+ E+ R A + G+N + + N+++F + L + Y
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
E ++ S+ ++ +G KL I ++D+ ++ +
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 168
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
T L ++ + + + + +AL +++SG+T PKGV L S+ +
Sbjct: 169 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 228
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
++ + + V+P H GM RF F + + Y
Sbjct: 229 NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSA 285
Query: 257 TAVPTIHQI-----VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEA 310
VPT+ ++D++ L I S A L+ + + + F P + +
Sbjct: 286 LLVPTLFSFFAKSTLIDKYDLS------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG 339
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCI 364
Y +TE T + P +G KPG+VG+ V ++ LD +GV Q +GE+C+
Sbjct: 340 YGLTETTSAILITP---EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELCV 392
Query: 365 RGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
RGP + GY NNPEA + GW H+GDI Y+D D + +V R+K LI G
Sbjct: 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 446
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 43/414 (10%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
++TY+ E+ R A + G+N + + N+++F + L + Y
Sbjct: 55 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 114
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
E ++ S+ ++ +G KL I ++D+ ++ +
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 173
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
T L ++ + + + + +AL +++SG+T PKGV L S+ +
Sbjct: 174 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 233
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
++ + + V+P H GM RF F + + Y
Sbjct: 234 NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSA 290
Query: 257 TAVPTIHQI-----VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEA 310
VPT+ ++D++ L I S A L+ + + + F P + +
Sbjct: 291 LLVPTLFSFFAKSTLIDKYDLS------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG 344
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCI 364
Y +TE T + P +G KPG+VG+ V ++ LD +GV Q +GE+C+
Sbjct: 345 YGLTETTSAILITP---EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELCV 397
Query: 365 RGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
RGP + GY NNPEA + GW H+GDI Y+D D + +V R+K LI G
Sbjct: 398 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 451
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 43/414 (10%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
++TY+ E+ R A + G+N + + N+++F + L + Y
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
E ++ S+ ++ +G KL I ++D+ ++ +
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 168
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
T L ++ + + + + +AL +++SG+T PKGV L S+ +
Sbjct: 169 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG 228
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
++ + + V+P H GM RF F + + Y
Sbjct: 229 NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY---RFEEELFLRSLQDYKIQSA 285
Query: 257 TAVPTIHQI-----VLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEA 310
VPT+ ++D++ L I S A L+ + + + F P + +
Sbjct: 286 LLVPTLFSFFAKSTLIDKYDLS------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQG 339
Query: 311 YAMTEATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCI 364
Y +TE T + P +G KPG+VG+ V ++ LD +GV Q +GE+C+
Sbjct: 340 YGLTETTSAILITP---EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELCV 392
Query: 365 RGPNVTKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
RGP + GY NNPEA + GW H+GDI Y+D D + +V R+K LI G
Sbjct: 393 RGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 446
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 171/413 (41%), Gaps = 30/413 (7%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
TY+ +++ R L A G+ GD VA N + + AV +P
Sbjct: 49 TYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSP 108
Query: 92 DEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDTN 151
E + L+ +E K+LL + N + + ++ + LA+ E+
Sbjct: 109 KEIAYILNHAEDKVLLF--DPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGE 166
Query: 152 AISKLTNDPSDVALFLHTSGTTSRPKGV-----PLTQNNLAASVSNIKSVYKLTESDSTV 206
+ +T+GTT PKGV L ++LAAS+ + + L+E D +
Sbjct: 167 EADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVL 223
Query: 207 IVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIV 266
V+P+FHV+ R ++ + T+ VPT+ +
Sbjct: 224 PVVPMFHVNAWCLPYAATLVGAKQVLPGP--RLDPASLVELFDGEGVTFTAGVPTVWLAL 281
Query: 267 LDRHVAKPEPVYPKLRFIRS--CSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSSNP 324
D E +L+ +R S AP L E G V + Y +TE + ++ N
Sbjct: 282 ADYL----ESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNF 337
Query: 325 LP--------EDGPHKPGSVGRPVGQ-EIAILDEIG--VPQEGGAKGEVCIRGPNVTKGY 373
+ E+ G P+ + + DE G VP++G A GEV ++GP +T GY
Sbjct: 338 VKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGY 397
Query: 374 KNNPEANKSAFL-FGWFHTGDIGYFDSDGYLHLVGRIKELINRGGNLHESISL 425
N EA +SA G+F TGDI +D +GY+ + R+K+LI GG S+ L
Sbjct: 398 YGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 450
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 161/401 (40%), Gaps = 12/401 (2%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXX 84
+ G+ L+Y + L A+RL G+ GD + PN EF I+F A+++
Sbjct: 50 ICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLN 109
Query: 85 XXXXYTPDEFEFYLSDSESKLLLTPAE----GNXXXXXXXSKLNISHATATLLDADSELT 140
+ E ++ + KLL+ + N +N+S +L+ +
Sbjct: 110 ALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDF 169
Query: 141 LSLAHSESDTNAISKLTNDPSD-VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKL 199
L E+ ++ P+D VA F + G+T PK +P T N+ SV + L
Sbjct: 170 GLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGL 229
Query: 200 TESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAV 259
+ + LP H + + F + ++ + V
Sbjct: 230 NSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCF-SIIQRHQVNMASLV 288
Query: 260 PTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHL 319
P+ + L++ A+ + L+ ++ AS + ++ E + + + M E L
Sbjct: 289 PSAVIMWLEK-AAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEG--L 345
Query: 320 MSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNP 377
++ L + + GRP+ EI I+DE G G + RGP GY +P
Sbjct: 346 VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSP 405
Query: 378 EANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
E N F ++++GD+ DG L +VGRIK+ INRGG
Sbjct: 406 EHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGG 446
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 97/409 (23%), Positives = 170/409 (41%), Gaps = 33/409 (8%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
++TY+ E+ R A + G+N + ++ N+++F + L + Y
Sbjct: 55 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCY 114
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSE----------L 139
E ++ S+ ++ +G KL I ++D+ ++ +
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI-IIMDSKTDYQGFQSMYTFV 173
Query: 140 TLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY-- 197
T L ++ + + + + +AL +++SG+T PKGV L LA S+ +
Sbjct: 174 TSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFG 233
Query: 198 -KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWY 256
++ + + V+P H GM RF F + + Y
Sbjct: 234 NQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMY---RFEEELFLRSLQDYKIQSA 290
Query: 257 TAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAP-VLEAYAMTE 315
VPT+ L + + L I S A L+ + + + F P + + Y +TE
Sbjct: 291 LLVPTLFSF-LAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 316 ATHLMSSNPLPEDGPHKPGSVGRPV---GQEIAILDE---IGVPQEGGAKGEVCIRGPNV 369
T + P +D KPG+VG+ V ++ LD +GV Q +GE+ +RGP +
Sbjct: 350 TTSAILITPKGDD---KPGAVGKVVPFFEAKVVDLDTGKTLGVNQ----RGELSVRGPMI 402
Query: 370 TKGYKNNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
GY NNPEA + GW H+GDI Y+D D + +V R+K LI G
Sbjct: 403 MSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 451
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 162/397 (40%), Gaps = 19/397 (4%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
TY + E R AS L G++ + + L +TV + FL + TP
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 92 DEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDA---DSELTLSLAHSE- 147
++ + L+ S ++ ++ A G + + H L+ + +SE L+ E
Sbjct: 110 ADYVYMLTHSHARAVI--ASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEEL 167
Query: 148 --SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVS-NIKSVYKLTESDS 204
+ A D+A +L++SG+T +PKG T NL + K + + E+D
Sbjct: 168 IDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDV 227
Query: 205 TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
LF +G+ R +A + ++++ T + VPT++
Sbjct: 228 VFSAAKLFFAYGLGNGLTFPLSVGATAILMAE-RPTADAIFARLVEHRPTVFYGVPTLYA 286
Query: 265 IVLDRHVAKPEPVYPK--LRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEATHLMSS 322
+L V+ P +R S +L I R FG +L+ TE H+ S
Sbjct: 287 NML---VSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLS 343
Query: 323 NPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANK 381
N G + G+ GRPV G EI + DE G G G++ I+GP+ Y NN E ++
Sbjct: 344 N---RAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSR 400
Query: 382 SAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
+ FL W +GD +G GR +++ G
Sbjct: 401 ATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQ 437
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 162/405 (40%), Gaps = 18/405 (4%)
Query: 25 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXX 84
+ G+ L+Y +++ + A L GI G+ + N E I F A+++
Sbjct: 45 IDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL 104
Query: 85 XXXXYTPDEFEFYLSDSESKLLLTPAE-----GNXXXXXXXSKLNISHATATLLDA-DSE 138
+ E Y S E LL+ + G+ ++ + L D+ +
Sbjct: 105 ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHN 164
Query: 139 LTLSLAHSESDTNAISKLTNDPSD-VALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY 197
L ++ H D A T P+D VA F + GTT PK +P T N+ SV +
Sbjct: 165 LQDAINHPAEDFTA----TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC 220
Query: 198 KLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYT 257
+ T+ + +P H + M SA+ + + K+
Sbjct: 221 QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP-SATLCFPLIEKHQVNVTA 279
Query: 258 AVPTIHQIVLDRHV-AKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTEA 316
VP + L + + L+ ++ A L+ + +R+ G + + + M E
Sbjct: 280 LVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEG 339
Query: 317 THLMSSNPLPEDGPHKPGSVGRPV--GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYK 374
L++ L + + G P+ E+ + D G P G G + RGP +GY
Sbjct: 340 --LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYY 397
Query: 375 NNPEANKSAF-LFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
+P+ N SAF G++ +GD+ D +GY+ + GR K+ INRGG
Sbjct: 398 KSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGE 442
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 96/421 (22%), Positives = 163/421 (38%), Gaps = 59/421 (14%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
T+ + ++AA+ V GI GD V LT + +F L + +
Sbjct: 87 FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATAT----------------LLD 134
+ + + + K+++ AE + +++ +HA +D
Sbjct: 147 TRDIVYRIEKAGLKMIVCIAEDDVP-----EQVDEAHAECGDIPLKKAKVGGDVLEGWID 201
Query: 135 ADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGV------PLTQNNLAA 188
EL S E T +S D+ L +SGT PK V PL A
Sbjct: 202 FRKELEESSPIFERPTGEVSTKN---EDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAK 258
Query: 189 SVSNIKSV---YKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFW 245
N++ Y + +S V + + RF A
Sbjct: 259 YWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD---------RFEAKNML 309
Query: 246 QDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGA 305
+ KY T + A PTI++ ++ ++ + L++ L P + +R E G
Sbjct: 310 EKASKYGVTTFCAPPTIYRFLIKEDLSHYN--FSTLKYAVVAGEPLNPEVFNRFLEFTGI 367
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEGGAKGEVCI 364
++E + TE +++ P E KPGS+G+P G +I ++D G E G +GE+ I
Sbjct: 368 KLMEGFGQTETVVTIATFPWMEP---KPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVI 424
Query: 365 RGPNVTKG--------YKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRG 416
N +G Y +PE + + G++HTGD+ + D DGYL VGR ++I
Sbjct: 425 ---NTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTS 481
Query: 417 G 417
G
Sbjct: 482 G 482
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG K N+ A E + L + SD
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
+ I K + + D L+TSG+T +PKGV T L + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
K V+ D + V H + + Q +
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ YTA I ++ + A LR + S + P + G
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
P + + E + + + + +GD D DGY + GR+ +++N G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG K N+ A E + L + SD
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
+ I K + + D L+TSG+T +PKGV T L + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
K V+ D + V H + + Q +
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ YTA I ++ + A LR + S + P + G
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
P + + E + + + + +GD D DGY + GR+ +++N G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG K N+ A E + L + SD
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
+ I K + + D L+TSG+T +PKGV T L + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
K V+ D + V H + + Q +
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ YTA I ++ + A LR + S + P + G
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
P + + E + + + + +GD D DGY + GR+ +++N G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG K N+ A E + L + SD
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
+ I K + + D L+TSG+T +PKGV T L + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
K V+ D + V H + + Q +
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ YTA I ++ + A LR + S + P + G
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
P + + E + + + + +GD D DGY + GR+ +++N G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG K N+ A E + L + SD
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
+ I K + + D L+TSG+T +PKGV T L + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
K V+ D + V H + + Q +
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ YTA I ++ + A LR + S + P + G
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
P + + E + + + + +GD D DGY + GR+ +++N G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG K N+ A E + L + SD
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
+ I K + + D L+TSG+T +PKGV T L + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
K V+ D + V H + + Q +
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ YTA I ++ + A LR + S + P + G
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
P + + E + + + + +GD D DGY + GR+ +++N G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 158/419 (37%), Gaps = 32/419 (7%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYT 90
++Y +H V R A+ L+ GI GDVVA+ P E + LA R ++
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 91 PDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDT 150
P+ + DS S+L++T EG K N+ A E + L + SD
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI 227
Query: 151 NA-----------ISKLTND-------PSDVALFLHTSGTTSRPKGVPLTQNN-LAASVS 191
+ I K + + D L+TSG+T +PKGV T L + +
Sbjct: 228 DWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAT 287
Query: 192 NIKSVYKLTESDSTVIVLPLFHV--HGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMI 249
K V+ D + V H + + Q +
Sbjct: 288 TFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVD 347
Query: 250 KYNAT-WYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFG---A 305
K+ YTA I ++ + A LR + S + P + G
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 306 PVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRP-VGQEIAILDEIGVPQEGGAKGEVCI 364
PV++ + TE M + PLP K GS RP G + A++D G PQEG +G + I
Sbjct: 408 PVVDTWWQTETGGFMIT-PLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVI 466
Query: 365 --RGPNVTKGYKNNPEANKSAFLFGW---FHTGDIGYFDSDGYLHLVGRIKELINRGGN 418
P + + E + + + + +GD D DGY + GR+ +++N G+
Sbjct: 467 TDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGH 525
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/425 (21%), Positives = 161/425 (37%), Gaps = 19/425 (4%)
Query: 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
G T LL ++ + A++ G +Y + +R A+ GI D V +
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 63 PNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPA-----EGNXXXX 117
PN EF + A+ R + E ++ +E+ + P +
Sbjct: 83 PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142
Query: 118 XXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPK 177
SKL +A+ L L H+E + SDVA + G+T K
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEP----VKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 178 GVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXG 237
+P T ++ S+ V L S + LP+ H + +
Sbjct: 199 LIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258
Query: 238 RFSASTFWQDMIKYNATWYTA-VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
F +I+ TA VP + + +D ++ + + L+ ++ A +
Sbjct: 259 PSPDDAF--PLIEREKVTITALVPPLAMVWMDAASSRRDDL-SSLQVLQVGGAKFSAEAA 315
Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQ 354
R++ FG + + + M E L++ L + + G+P+ E + D+
Sbjct: 316 RRVKAVFGCTLQQVFGMAEG--LVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV 373
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
+ G G + RGP +GY E N ++F G++ TGDI DGY+ + GR K+ I
Sbjct: 374 KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433
Query: 414 NRGGN 418
NRGG
Sbjct: 434 NRGGE 438
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 16/257 (6%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXX 221
D+A + TSGTT K VP T N AS K + + VLP++H+ G+
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGL---S 220
Query: 222 XXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKL 281
+F+A + T + VP ++ + + +P + L
Sbjct: 221 VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKIL 280
Query: 282 RFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSNPLPEDGPHKPGSVGRPV 340
SA++ L + P+ ++ MTE + +++ PE +P +VG P
Sbjct: 281 LGGAKLSATMIETALQ-----YNLPIYNSFGMTETCSQFLTAT--PEMLHARPDTVGMPS 333
Query: 341 GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSD 400
+ +I P + G GE+ I+G NV GY P F G+F+TGDI D +
Sbjct: 334 AN---VDVKIKNPNKEG-HGELMIKGANVMNGYL-YPTDLTGTFENGYFNTGDIAEIDHE 388
Query: 401 GYLHLVGRIKELINRGG 417
GY+ + R K+LI GG
Sbjct: 389 GYVMIYDRRKDLIISGG 405
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 110/298 (36%), Gaps = 39/298 (13%)
Query: 160 PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK-SVYKLTESDSTVIVLPLFHVHGMX 218
P+D+A +TSG+T P+GV +T + A++ I KL D V LP +H G+
Sbjct: 174 PNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHDXGLV 233
Query: 219 XXXXXXXXXXXXXXXXXXGRFSASTF-WQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPV 277
F+ W +I N + P + R V + +
Sbjct: 234 GFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLA 293
Query: 278 YPKLRFIRSCSASLAPV---ILSRLEEAFGAPVLE------AYAMTEATHLMS------- 321
L R P+ L + E F + Y + E +S
Sbjct: 294 ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAENALAVSFSDEASG 353
Query: 322 --SNPLPED------GPHKPGSVGRPVG-----------QEIAILDEIGVPQEGGAKGEV 362
N + D PG+ R V I I +E G P G +
Sbjct: 354 VVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGXPVAERVVGHI 413
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKEL-INRGGNL 419
CI GP++ GY + + GW TGD+GY DGYL++ GRIK+L I RG N+
Sbjct: 414 CISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNI 470
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 91/425 (21%), Positives = 157/425 (36%), Gaps = 19/425 (4%)
Query: 3 GVTLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTF 62
G T LL ++ + A++ G +Y + +R A+ GI D V +
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITC-GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 63 PNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPA-----EGNXXXX 117
PN EF + A+ R + E ++ +E+ + P +
Sbjct: 83 PNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLAR 142
Query: 118 XXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPK 177
SKL +A+ L L H+E + SDVA + G+T K
Sbjct: 143 QVQSKLPTLKNIIVAGEAEEFLPLEDLHTEP----VKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 178 GVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXG 237
+P T ++ S+ V L S + LP H + +
Sbjct: 199 LIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPS 258
Query: 238 RFSASTFWQDMIKYNATWYTA-VPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVIL 296
F +I+ TA VP + + D ++ + + L+ ++ A +
Sbjct: 259 PSPDDAF--PLIEREKVTITALVPPLAXVWXDAASSRRDDL-SSLQVLQVGGAKFSAEAA 315
Query: 297 SRLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG--QEIAILDEIGVPQ 354
R++ FG + + + E L++ L + + G+P E + D+
Sbjct: 316 RRVKAVFGCTLQQVFGXAEG--LVNYTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDV 373
Query: 355 EGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF-GWFHTGDIGYFDSDGYLHLVGRIKELI 413
+ G G + RGP +GY E N ++F G++ TGDI DGY+ + GR K+ I
Sbjct: 374 KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433
Query: 414 NRGGN 418
NRGG
Sbjct: 434 NRGGE 438
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 100/441 (22%), Positives = 176/441 (39%), Gaps = 54/441 (12%)
Query: 10 LNQVIDQFSSKRALSVS---GKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTV 66
++Q+ ++ SKR +V+ LTY ++ + A + GI +V + ++
Sbjct: 41 IHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI 100
Query: 67 EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
+ I LAV++ Y + ++ L DS++++LLT + ++
Sbjct: 101 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLT-------------QKHLV 147
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTN-----DPSDVALFLHTSGTTSRPKGVPL 181
H L + + + E DT I + TN +D+A ++TSGTT PKG L
Sbjct: 148 H-----LIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTML 202
Query: 182 TQNNLAASVSNIKSVYK----LTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXG 237
+SN+K ++ +TE D + +
Sbjct: 203 EHK----GISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDT 258
Query: 238 RFSASTFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILS 297
F Q + + T T PT + + LD PE + I + SA+ +P +++
Sbjct: 259 INDFVKFEQYINQKEITVITLPPT-YVVHLD-----PERILSIQTLITAGSAT-SPSLVN 311
Query: 298 RLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPV-GQEIAILDEIGVPQEG 356
+ +E + AY TE T ++ ++ +G P+ +I I+DE +
Sbjct: 312 KWKEK--VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSV 369
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF-------HTGDIGYFDSDGYLHLVGRI 409
G GE+CI G + +GY PE F+ F TGD + SDG + +GRI
Sbjct: 370 GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRI 429
Query: 410 KELINRGGN---LHESISLFL 427
+ G+ L E S+ L
Sbjct: 430 DNQVKIRGHRVELEEVESILL 450
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 118/297 (39%), Gaps = 18/297 (6%)
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDP----SDVALFLHTSGTTSRPKGVPLT 182
HA +DA + +++ E N ++ D + ++TSG+T PKGV ++
Sbjct: 105 HAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQIS 164
Query: 183 QNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSAS 242
NL + I + + ++ + P +
Sbjct: 165 AANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPK 224
Query: 243 TFWQDMIKYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEA 302
++++ K +T+ P+ Q+ L + + P C L + L E
Sbjct: 225 VLFEELKKSGLNVWTSTPSFVQMCL-MDPGFSQDLLPHADTFMFCGEVLPVSVAKALLER 283
Query: 303 F-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVG-----QEIAILDEIGVPQEG 356
F A + Y TEAT ++S + D + S+ PVG I I+DE G P
Sbjct: 284 FPKAKIFNTYGPTEATVAVTSVEITNDVISRSESL--PVGFAKPDMNIFIMDEEGQPLPE 341
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLF---GW-FHTGDIGYFDSDGYLHLVGRI 409
G KGE+ I GP+V++GY PE + AF W + TGD G F DG + GR+
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG-FIQDGQIFCQGRL 397
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 170/435 (39%), Gaps = 57/435 (13%)
Query: 29 FDLTYSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXX 87
+ +TY + E V + A L + G+ GD VA+ P E +I LA+ R
Sbjct: 112 YSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFA 171
Query: 88 XYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL------ 141
++ + ++D +SK+++T E N +K + A L
Sbjct: 172 GFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP 231
Query: 142 SLA-HSESDTNAISKLTN----------DPSDVALFLHTSGTTSRPKGVP-LTQNNLAAS 189
S+A H+ D + ++ D D L+TSG+T PKGV T L +
Sbjct: 232 SVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGA 291
Query: 190 VSNIKSVYKLTESDS--TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQD 247
+ ++ + + D T + H + S +W
Sbjct: 292 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 248 MIKYNATWYTAVPTIHQIV-------LDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLE 300
+ ++ T + PT +++ ++ H K LR + S +A +
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLK------SLRCLGSVGEPIAAEVWEWYS 405
Query: 301 EAFGA---PVLEAYAMTEA-THLMSSNPLPED-GPHKPGSVGRPV-GQEIAILDEIGVPQ 354
E G P+++ Y TE+ +HL++ PL P KPGS P G + +LD P
Sbjct: 406 EKIGKNEIPIVDTYWQTESGSHLVT--PLAGGVTPMKPGSASFPFFGIDAVVLD----PN 459
Query: 355 EGG------AKGEVCIRG--PNVTKGYKNNPEANKSAFLF---GWFHTGDIGYFDSDGYL 403
G A+G + ++ P+ + N + +L G++ TGD D DGY+
Sbjct: 460 TGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYI 519
Query: 404 HLVGRIKELINRGGN 418
++GR+ +++N G+
Sbjct: 520 WILGRVDDVVNVSGH 534
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 92/419 (21%), Positives = 150/419 (35%), Gaps = 41/419 (9%)
Query: 22 ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
AL+V + LT++ + VE A+RL A G+ VA+ PN+ + VI LA+ R
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81 XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
P L +E L+ E ++ A A
Sbjct: 80 ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ L D I +P+ A +TSGTT PK + Q + V +
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
+ L V++ +PL+HV G F Q + +
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
T A PT + + LR + A++ +L + + + AY
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
TEA + + PG E+ I+ DEI G +GE+ +
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
+ GY N P+A GW+ T D+ + +G + ++GR+ ++I GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/423 (21%), Positives = 148/423 (34%), Gaps = 49/423 (11%)
Query: 22 ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
AL+V + LT++ + VE A+RL A G+ VA+ PN+ + VI LA+ R
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81 XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
P L +E L+ E ++ A A
Sbjct: 80 ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ L D I +P+ A +TSGTT PK + Q + V +
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
+ L V++ +PL+HV G F Q + +
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
T A PT + + LR + A++ +L + + + Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATH-LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGP--- 367
TEA + L P K G+ P E+ + + GG E+ G
Sbjct: 305 GTTEAMNSLYMRQP-------KTGTEMAP-----GFFSEVRIVRIGGGVDEIVANGEEGE 352
Query: 368 -------NVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NL 419
+ GY N PEA GW+ T D+ + +G + ++GR+ ++I GG N+
Sbjct: 353 LIVAASDSAFVGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412
Query: 420 HES 422
H S
Sbjct: 413 HPS 415
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 91/419 (21%), Positives = 149/419 (35%), Gaps = 41/419 (9%)
Query: 22 ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
AL+V + LT++ + VE A+RL A G+ VA+ PN+ + VI LA+ R
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81 XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
P L +E L+ E ++ A A
Sbjct: 80 ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ L D I +P+ A +TSGTT PK + Q + V +
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
+ L V++ +PL+HV G F Q + +
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
T A PT + + LR + A++ +L + + + Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
TEA + + PG E+ I+ DEI G +GE+ +
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
+ GY N P+A GW+ T D+ + +G + ++GR+ ++I GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/419 (21%), Positives = 149/419 (35%), Gaps = 41/419 (9%)
Query: 22 ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
AL+V + LT++ + VE A+RL A G+ VA+ PN+ + VI LA+ R
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81 XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
P L +E L+ E ++ A A
Sbjct: 80 ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ L D I +P+ A +TSGTT PK + Q + V +
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
+ L V++ +PL+HV G F Q + +
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
T A PT + + LR + A++ +L + + + Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
TEA + + PG E+ I+ DEI G +GE+ +
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
+ GY N P+A GW+ T D+ + +G + ++GR+ ++I GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 91/419 (21%), Positives = 149/419 (35%), Gaps = 41/419 (9%)
Query: 22 ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
AL+V + LT++ + VE A+RL A G+ VA+ PN+ + VI LA+ R
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81 XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
P L +E L+ E ++ A A
Sbjct: 80 ---------VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ L D I +P+ A +TSGTT PK + Q + V +
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
+ L V++ +PL+HV G F Q + +
Sbjct: 187 TQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
T A PT + + LR + A++ +L + + + Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAIL------DEIGVPQEGGAKGEVCIR 365
TEA + + PG E+ I+ DEI G +GE+ +
Sbjct: 305 GTTEAMNSLYMRQPKTGTEMAPGFF-----SEVRIVRIGGGVDEI---VANGEEGELIVA 356
Query: 366 GPNVT-KGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NLHES 422
+ GY N P+A GW+ T D+ + +G + ++GR+ ++I GG N+H S
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPS 415
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 298 RLEEAF-GAPVLEAYAMTEATHLMS----SNPLPEDGPHKPGSVGRPVGQEIAILDEIGV 352
+L E F A ++ AY TEAT +S + + ++ P +P I+DE G
Sbjct: 283 KLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKP-DSPTYIIDEDGK 341
Query: 353 PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGW-----FHTGDIGYFDSDGYLHLVG 407
G +GE+ + GP V+KGY NNPE AF F + +HTGDIG D L G
Sbjct: 342 ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAF-FTFKGQPAYHTGDIGSLTEDNILLYGG 400
Query: 408 RIKELINRGG 417
R+ I G
Sbjct: 401 RLDFQIKYAG 410
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 162 DVALFLHTSGTTSRPKGVPLTQNNL 186
D + TSGTT +PKGV ++ +NL
Sbjct: 146 DNYYIIFTSGTTGQPKGVQISHDNL 170
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 14/172 (8%)
Query: 22 ALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXX 81
AL+ SG+ L+Y + E R A RL G G VVAL ++E VI L V++
Sbjct: 482 ALTYSGQ-TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAA 540
Query: 82 XXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTL 141
D + L+DS + LLT E T T L D +
Sbjct: 541 YLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY-------TGTTLFIDDQTRF 593
Query: 142 SLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 193
S+ T AI DP+D A ++TSGTT +PKG T N+ V ++
Sbjct: 594 EEQASDPAT-AI-----DPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV 639
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 307 VLEAYAMTEATHLMSSN---PLPEDGPHKPGSVGRPVGQ-EIAILDEIGVPQEGGAKGEV 362
++ Y TE T +++ LP+ P +G+P+ + IL+E Q GA GE+
Sbjct: 749 LINCYGPTEGTVFATAHVVHDLPDSISSLP--IGKPISNASVYILNEQSQLQPFGAVGEL 806
Query: 363 CIRGPNVTKGYKNNPEANKSAFLFGWF-------HTGDIGYFDSDGYLHLVGRIKELINR 415
CI G V+KGY N + K F+ F TGD+ + DG + GRI + +
Sbjct: 807 CISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI 866
Query: 416 GGN 418
G+
Sbjct: 867 RGH 869
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/400 (20%), Positives = 147/400 (36%), Gaps = 27/400 (6%)
Query: 33 YSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
+ + E ++AA+ L A G+ GD VA+ P E+ ++ L IR
Sbjct: 76 FRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS 135
Query: 92 DEFEFYLSDSESKLLLTPAEGNXXXXXXXS-------KLNISHATATLLDADSELTLSLA 144
+ + L S++K ++ E S KL +S + D L
Sbjct: 136 TDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC-----DGWLNFKKL 190
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
+E+ T T A++ TSGT+ PK + ++L L SD
Sbjct: 191 LNEASTTHHCVETGSQEASAIYF-TSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 205 TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
+ + + +F + + Y P +++
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR 309
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSN 323
++L + ++ + +P L+ + SL P L G + E+Y TE M S
Sbjct: 310 MLLQQDLSSYK--FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 324 PLPEDGPHKPGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGP-----NVTKGYKNNP 377
+ KPG +G ++ I+D+ G G +G++ IR + GY +NP
Sbjct: 368 TMK----IKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
+ + ++ GD G D DGY +GR ++IN G
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSG 463
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 83/400 (20%), Positives = 147/400 (36%), Gaps = 27/400 (6%)
Query: 33 YSRIHELVERAASRLV-AAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
+ + E ++AA+ L A G+ GD VA+ P E+ ++ L IR
Sbjct: 76 FRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS 135
Query: 92 DEFEFYLSDSESKLLLTPAEGNXXXXXXXS-------KLNISHATATLLDADSELTLSLA 144
+ + L S++K ++ E S KL +S + D L
Sbjct: 136 TDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC-----DGWLNFKKL 190
Query: 145 HSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDS 204
+E+ T T A++ TSGT+ PK + ++L L SD
Sbjct: 191 LNEASTTHHCVETGSQEASAIYF-TSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDI 249
Query: 205 TVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYNATWYTAVPTIHQ 264
+ + + +F + + Y P +++
Sbjct: 250 MWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYR 309
Query: 265 IVLDRHVAKPEPVYPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAYAMTE-ATHLMSSN 323
++L + ++ + +P L+ + SL P L G + E+Y TE M S
Sbjct: 310 MLLQQDLSSYK--FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK 367
Query: 324 PLPEDGPHKPGSVGRPVG-QEIAILDEIGVPQEGGAKGEVCIRGP-----NVTKGYKNNP 377
+ KPG +G ++ I+D+ G G +G++ IR + GY +NP
Sbjct: 368 TMK----IKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNP 423
Query: 378 EANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG 417
+ + ++ GD G D DGY +GR ++IN G
Sbjct: 424 DKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSG 463
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 31/213 (14%)
Query: 6 LIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNT 65
L+ L +V + ALS ++Y R+ + A L+A G+ GD VAL
Sbjct: 37 LVSLFREVAATAPERTALSAEDD-RISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPG 95
Query: 66 VEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDS-ESKLLLTPAEGNXXXXXXXSKLN 124
E ++ LA+++ +F L+DS S L+ P EG +++
Sbjct: 96 AEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEG-----CAVTRVV 150
Query: 125 ISHATATLLDADSELTLSLAHSESDTNAISKLTNDPS----DVALFLHTSGTTSRPKGVP 180
+ A A DA+ +T P D+A ++TSGTT PKGVP
Sbjct: 151 RTAAVAECKDAEP----------------GPVTGAPGPGAEDMAYVIYTSGTTGNPKGVP 194
Query: 181 LTQNNLAASVSNIKSVYKLTESDSTVIVLPLFH 213
+ N+ A ++ SV+ + D + LFH
Sbjct: 195 VRHANVLALLAGAPSVFDFSGDDRWL----LFH 223
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/376 (22%), Positives = 143/376 (38%), Gaps = 57/376 (15%)
Query: 67 EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
E +I FL ++ D + +S +KLLL+ + + ++
Sbjct: 63 EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS-----------ATAVTVT 111
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
++ D+ + H + N + D + ++TSG+T PKGV +T N L
Sbjct: 112 DLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDEN--FYIIYTSGSTGNPKGVQITYNCL 169
Query: 187 AASVSNIKSVYKLTESDSTVIVLPL-FHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFW 245
+ + L + P F + M + T W
Sbjct: 170 VSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL---------------VTGGTLW 214
Query: 246 ---QDMI-----------KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
+DMI + + +T+ P+ ++ L + E + P ++ C L
Sbjct: 215 AIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL-MEASFSESMLPNMKTFLFCGEVL 273
Query: 292 APVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-----EIA 345
+ +L E F A ++ Y TEAT ++ + E+ + S+ PVG +
Sbjct: 274 PNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL--PVGYCKSDCRLL 331
Query: 346 ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDG 401
I+ E G G KGE+ I GP+V+ GY +PE + AF + TGD GY + +G
Sbjct: 332 IMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NG 390
Query: 402 YLHLVGRIKELINRGG 417
L GR+ I G
Sbjct: 391 LLFYNGRLDFQIKLHG 406
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 141/368 (38%), Gaps = 57/368 (15%)
Query: 67 EFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNIS 126
E +I FL ++ D + +S +KLLL+ + + ++
Sbjct: 63 EMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLS-----------ATAVTVT 111
Query: 127 HATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 186
++ D+ + H + N + D + ++TSG+T PKGV +T N L
Sbjct: 112 DLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDEN--FYIIYTSGSTGNPKGVQITYNCL 169
Query: 187 AASVSNIKSVYKLTESDSTVIVLPL-FHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFW 245
+ + L + P F + M + T W
Sbjct: 170 VSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL---------------VTGGTLW 214
Query: 246 ---QDMI-----------KYNATWYTAVPTIHQIVLDRHVAKPEPVYPKLRFIRSCSASL 291
+DMI + + +T+ P+ ++ L + E + P ++ C L
Sbjct: 215 AIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCL-MEASFSESMLPNMKTFLFCGEVL 273
Query: 292 APVILSRLEEAF-GAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQ-----EIA 345
+ +L E F A ++ Y TEAT ++ + E+ + S+ PVG +
Sbjct: 274 PNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL--PVGYCKSDCRLL 331
Query: 346 ILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLF----GWFHTGDIGYFDSDG 401
I+ E G G KGE+ I GP+V+ GY +PE + AF + TGD GY + +G
Sbjct: 332 IMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NG 390
Query: 402 YLHLVGRI 409
L GR+
Sbjct: 391 LLFYNGRL 398
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 91/423 (21%), Positives = 144/423 (34%), Gaps = 49/423 (11%)
Query: 22 ALSVSGK-FDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXX 80
AL+V + LT++ + VE A+RL A G+ VA+ PN+ + VI LA+ R
Sbjct: 20 ALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79
Query: 81 XXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELT 140
P L +E L+ E ++ A A
Sbjct: 80 ---------VPALLNPRLKSAELAELIKRGEXTAAVIAVGRQV----ADAIFQSGSGARI 126
Query: 141 LSLAHSESDTNA------ISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIK 194
+ L D I +P+ A +TSGTT PK + Q + V
Sbjct: 127 IFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXS 186
Query: 195 SVYKLTESDSTVIV--LPLFHVHGMXXXXXXXXXXXXXXXXXXXGRFSASTFWQDMIKYN 252
+ L V++ PL+HV G F Q + +
Sbjct: 187 TQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVE--EFRPVDALQLVQQEQ 244
Query: 253 ATWYTAVPTIHQIVLDRHVAKPEPV-YPKLRFIRSCSASLAPVILSRLEEAFGAPVLEAY 311
T A PT + + LR + A+ +L + + + Y
Sbjct: 245 VTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIY 304
Query: 312 AMTEATH-LMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQEGGAKGEVCIRGP--- 367
TEA + L P K G+ P E+ + + GG E+ G
Sbjct: 305 GTTEAXNSLYXRQP-------KTGTEXAP-----GFFSEVRIVRIGGGVDEIVANGEEGE 352
Query: 368 -------NVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGG-NL 419
+ GY N P+A GW+ T D+ + +G + ++GR+ + I GG N+
Sbjct: 353 LIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENI 412
Query: 420 HES 422
H S
Sbjct: 413 HPS 415
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
+LTY ++E R A RLV G+ G +V + + V+ LAV++ +
Sbjct: 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQF 159
Query: 90 TPDEFEFYLSDSESKLLLT--PAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSE 147
+ L D+ + LL+T P G T TL D +
Sbjct: 160 PVERLALSLEDTGAPLLVTSRPLSGRLT------------GTTTLYVEDE--------AA 199
Query: 148 SDTNAISKLTN-DPSDVALFLHTSGTTSRPKGV 179
SD A + T P DVA + TSG+T RPKGV
Sbjct: 200 SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGV 232
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 336 VGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF----- 389
+G P+ G+ +LD+ P GA GE+ + G + GY + P F+ F
Sbjct: 385 IGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGG 444
Query: 390 ----HTGDIGYFDSDGYLHLVGR 408
TGD+ +DG L VGR
Sbjct: 445 ERMYRTGDLARRRADGVLEYVGR 467
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
+LTY ++E R A RLV G+ G +V + + V+ LAV++ +
Sbjct: 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQF 159
Query: 90 TPDEFEFYLSDSESKLLLT--PAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSE 147
+ L D+ + LL+T P G T TL D +
Sbjct: 160 PVERLALSLEDTGAPLLVTSRPLSGRLT------------GTTTLYVEDE--------AA 199
Query: 148 SDTNAISKLTN-DPSDVALFLHTSGTTSRPKGV 179
SD A + T P DVA + TSG+T RPKGV
Sbjct: 200 SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGV 232
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 336 VGRPV-GQEIAILDEIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWF----- 389
+G P+ G+ +LD+ P GA GE+ + G + GY + P F+ F
Sbjct: 385 IGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGG 444
Query: 390 ----HTGDIGYFDSDGYLHLVGRIKELIN 414
TGD+ +DG L VGR + +
Sbjct: 445 ERMYRTGDLARRRADGVLEYVGRADDQVK 473
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 329 GPHKPGSVGRPVGQEIAILD-EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG 387
G +K S G P+ QE+ I+D + +P + GE+ ++ +V KGY N PE + AF
Sbjct: 369 GSYKLVSSGNPI-QEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGK 427
Query: 388 ---------WFHTGDIGYFDSDGYLHLVGRIKELINRGGNLH 420
+ TGD+G+ + L++ GRIK+LI G H
Sbjct: 428 IKDDERSAIYLRTGDLGFL-HENELYVTGRIKDLIIIYGKNH 468
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 30/199 (15%)
Query: 32 TYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTP 91
TY ++ + + A+ L A G GD V L F + + FL + Y P
Sbjct: 42 TYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL---YAGCIAVPIYPP 98
Query: 92 ------DEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSEL----TL 141
D+ + +++S+ ++L A+ +I TA L+ + + +
Sbjct: 99 AQEKLLDKAQRIVTNSKPVIVLXIAD------------HIKKFTADELNTNPKFLKIPAI 146
Query: 142 SLAHSESDTNAISKLTNDPS-DVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLT 200
+L E + ++ + T+ S D+A +TSG+T PKGV ++ +NL +++ I + +
Sbjct: 147 ALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFH-- 204
Query: 201 ESDSTVIV--LPLFHVHGM 217
+D T+I LP H G+
Sbjct: 205 XNDETIIFSWLPPHHDXGL 223
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 307 VLEAYAMTEATHLMSSNPLPEDGPHKPGSVGRPVGQEIAILDEIGVPQ--EGGAKGEVCI 364
++ Y TE T S+ + D + +G P+G +A + G + + G GE+ I
Sbjct: 322 LVNVYGPTEVTIGCSAGRILPDSDTR--CIGHPLGDSVAHVLAPGSNEHVKKGXAGELVI 379
Query: 365 RGPNVTKGYKNNPEANKSAFLFG--WFHTGDIGYFDSDGYLHLVGRIKELIN-RGGNLH 420
G V GY N P+A + G + TGDI D+D + +GR E + RG L
Sbjct: 380 EGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLE 438
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 13/160 (8%)
Query: 30 DLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXY 89
D TY +++E + A+ ++ A ++ G +A++ ++ + + + +
Sbjct: 55 DWTYKKLNETANQVANLIIHASLH-GRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGL 113
Query: 90 TPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESD 149
D F L DS + + N + + T L + +L S D
Sbjct: 114 PNDRKSFLLRDSRAAXAFV-CDNNF------DGVELPPETKVLDTKNQSFIENL--STQD 164
Query: 150 TNAISKLTNDPSDV-ALFLHTSGTTSRPKGVPLTQNNLAA 188
T+ I L N P ++ A L+TSG+T PKGV ++++NL++
Sbjct: 165 TSDI--LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSS 202
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 27/121 (22%)
Query: 307 VLEAYAMTEAT-----HLMSSNPLPEDGPHKPGSVGRPVGQEIA-----ILDEIGVP-QE 355
++ Y TE T H+++ + L ED P+G+ IA +LDE G E
Sbjct: 305 LVNGYGPTENTTFTCCHVVTDDDLEEDDI--------PIGKAIAGTAVLLLDEHGQEIAE 356
Query: 356 GGAKGEVCIRGPNVTKGYKNNPEANKSAF--------LFGWFHTGDIGYFDSDGYLHLVG 407
GE+ G + +GY+N+ +++F L + TGD +D G L +G
Sbjct: 357 PDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIG 416
Query: 408 R 408
R
Sbjct: 417 R 417
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 91/433 (21%), Positives = 154/433 (35%), Gaps = 66/433 (15%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI---RXXXXXXXXXX 87
LT+S+++ A L G + GD V ++ P +E+V+ FL + R
Sbjct: 59 LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117
Query: 88 XYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSE 147
T + + LSDS +LT + ++ + ++++ D L +
Sbjct: 118 GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR-RPGESPPSIIEVD------LLDLD 170
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD---- 203
+ K PS A +TSG+T P GV + N+ + + S Y ++D
Sbjct: 171 APNGYTFKEDEYPS-TAYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGY-FADTDGIPP 228
Query: 204 ---STVIVLPLFHVHGMXXXXXXXXXXXXXXXXXXXGRF-SASTFWQDMIKYNATWYTAV 259
+ V LP +H G+ F W + + ++A
Sbjct: 229 PNSALVSWLPFYHDXGLVIGICAPILGGYPAVLTSPVSFLQRPARWXHLXASDFHAFSAA 288
Query: 260 PTIHQIVLDRHVAKPEPVYPKLR---FIRSCSASLAPVILSRLEEAFGAPVLE------A 310
P + R + L I S S + + R + F L+ +
Sbjct: 289 PNFAFELAARRTTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPS 348
Query: 311 YAMTEAT-HLMSSNP--LPED----------GPHKPGSVGR---------PVGQEIAILD 348
Y + EAT ++ +S P PE G KP + G P + I+D
Sbjct: 349 YGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVD 408
Query: 349 -EIGVPQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFG------------WFHTGDIG 395
+ + G GE+ + G NV GY P+ ++ F W TGD G
Sbjct: 409 SDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468
Query: 396 YFDSDGYLHLVGR 408
F +DG ++GR
Sbjct: 469 -FVTDGKXFIIGR 480
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 20/197 (10%)
Query: 31 LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVI---RXXXXXXXXXX 87
LT+S+++ A L G + GD V ++ P +E+V+ FL + R
Sbjct: 59 LTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQG 117
Query: 88 XYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSE 147
T + + LSDS +LT + ++ + ++++ D L +
Sbjct: 118 GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR-RPGESPPSIIEVD------LLDLD 170
Query: 148 SDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESD---- 203
+ K PS A +TSG+T P GV ++ N+ + + S Y ++D
Sbjct: 171 APNGYTFKEDEYPS-TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPP 228
Query: 204 ---STVIVLPLFHVHGM 217
+ V LP +H G+
Sbjct: 229 PNSALVSWLPFYHDMGL 245
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 357 GAKGEVCIRGPNVTKGYKNNPEANKSAFLFG------------WFHTGDIGYFDSDGYLH 404
G GE+ + G NV GY P+ ++ F W TGD G F +DG +
Sbjct: 418 GTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG-FVTDGKMF 476
Query: 405 LVGR 408
++GR
Sbjct: 477 IIGR 480
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 167 LHTSGTTSRPKGVPLTQNNLAASVSNIKSVYKLTESDSTVIVLPLFHVHGM 217
LHTSG+T PK + +T+ LAAS + L ++ L + ++ G+
Sbjct: 43 LHTSGSTGXPKPITVTRAQLAASAAXTGKALSLGPGTRALVCLNVGYIAGL 93
>pdb|1X74|A Chain A, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|B Chain B, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|C Chain C, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|1X74|D Chain D, Alpha-Methylacyl-Coa Racemase From Mycobacterium
Tuberculosis- Mutational And Structural Characterization
Of The Fold And Active Site
pdb|2GCE|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCE|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By Alpha-
Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A SMOOTH,
METHIONINE- Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GCI|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AsparteHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD0|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD2|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|A Chain A, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|B Chain B, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|C Chain C, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2GD6|D Chain D, The 1,1-Proton Transfer Reaction Mechanism By
Alpha-Methylacyl-Coa Racemase Is Catalyzed By An
AspartateHISTIDINE PAIR AND INVOLVES A Smooth,
Methionine-Rich Surface For Binding The Fatty Acyl
Moiety
pdb|2YIM|A Chain A, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|B Chain B, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|C Chain C, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
pdb|2YIM|D Chain D, The Enolisation Chemistry Of A Thioester-Dependent
Racemase: The 1.4 A Crystal Structure Of A Complex With
A Planar Reaction Intermediate Analogue
Length = 360
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 17/71 (23%)
Query: 358 AKGEVCIRG--PNVTKGYKNNPEANKS-------AFLFGWFHTG--------DIGYFDSD 400
AK +V I G P VT+ PE A + GW TG DI Y +
Sbjct: 75 AKADVLIEGYRPGVTERLGLGPEECAKVNDRLIYARMTGWGQTGPRSQQAGHDINYISLN 134
Query: 401 GYLHLVGRIKE 411
G LH +GR E
Sbjct: 135 GILHAIGRGDE 145
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 353 PQEGGAKGEVCIRGPNVTKGYKNNPEANKSAFLFGWFHTGDIGYFDSDGYLHLVG 407
P+ G GE+ GP +G K+ PE+ +LF HT + G+L L G
Sbjct: 455 PEAGEKGGEILYSGP--PEGLKHVPESQTGQYLFADRHTEPHTPREPAGWLELNG 507
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,638,300
Number of Sequences: 62578
Number of extensions: 458410
Number of successful extensions: 1259
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 109
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)