Your job contains 1 sequence.
>014066
MVTTVAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLK
KIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITK
VIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ
NWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVR
SFHLKLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKK
KGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKG
DKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLG
KVKKEKKKLVA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014066
(431 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2098979 - symbol:AT3G58660 species:3702 "Arabi... 819 1.2e-81 1
TAIR|locus:2041554 - symbol:AT2G42650 species:3702 "Arabi... 757 4.5e-75 1
TAIR|locus:2202260 - symbol:AT1G06380 species:3702 "Arabi... 603 9.3e-59 1
UNIPROTKB|F1N8V1 - symbol:RSL1D1 "Uncharacterized protein... 314 3.9e-28 1
UNIPROTKB|O76021 - symbol:RSL1D1 "Ribosomal L1 domain-con... 267 1.4e-22 1
UNIPROTKB|J3QSV6 - symbol:RSL1D1 "Ribosomal L1 domain-con... 254 2.3e-21 1
UNIPROTKB|E2R7S5 - symbol:RSL1D1 "Uncharacterized protein... 255 3.0e-21 1
UNIPROTKB|I3LG73 - symbol:RSL1D1 "Uncharacterized protein... 250 1.1e-20 1
UNIPROTKB|A4FV97 - symbol:RSL1D1 "Ribosomal L1 domain-con... 239 1.6e-19 1
UNIPROTKB|Q1PG84 - symbol:Rsl1d1 "PBK1" species:10092 "Mu... 233 6.7e-19 1
ASPGD|ASPL0000008098 - symbol:AN6698 species:162425 "Emer... 140 5.4e-16 2
UNIPROTKB|I3L3U9 - symbol:RSL1D1 "Ribosomal L1 domain-con... 142 3.5e-15 2
POMBASE|SPAC8F11.04 - symbol:SPAC8F11.04 "U3 snoRNP-assoc... 184 3.7e-12 1
UNIPROTKB|I3L3C4 - symbol:RSL1D1 "Ribosomal L1 domain-con... 141 2.6e-09 1
FB|FBgn0032050 - symbol:CG13096 species:7227 "Drosophila ... 151 1.3e-08 2
RGD|1359295 - symbol:Rsl1d1 "ribosomal L1 domain containi... 154 3.0e-08 1
POMBASE|SPCC306.07c - symbol:SPCC306.07c "U3 snoRNP-assoc... 143 1.4e-07 1
UNIPROTKB|I3L234 - symbol:RSL1D1 "Ribosomal L1 domain-con... 106 1.9e-05 1
FB|FBgn0036213 - symbol:RpL10Ab "Ribosomal protein L10Ab"... 118 5.3e-05 1
FB|FBgn0038281 - symbol:RpL10Aa "Ribosomal protein L10Aa"... 117 6.8e-05 1
WB|WBGene00009993 - symbol:F53F4.11 species:6239 "Caenorh... 85 0.00051 2
>TAIR|locus:2098979 [details] [associations]
symbol:AT3G58660 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] [GO:0006164 "purine nucleotide biosynthetic process"
evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
EMBL:AL353032 Gene3D:3.30.190.20 eggNOG:NOG247516 KO:K14775
OMA:IEKACGS ProtClustDB:CLSN2683932 EMBL:AY070404 IPI:IPI00521804
PIR:T49149 RefSeq:NP_191425.1 ProteinModelPortal:Q9LXT5 SMR:Q9LXT5
STRING:Q9LXT5 PaxDb:Q9LXT5 PRIDE:Q9LXT5 EnsemblPlants:AT3G58660.1
GeneID:825035 KEGG:ath:AT3G58660 TAIR:At3g58660
HOGENOM:HOG000091059 InParanoid:Q9LXT5 PhylomeDB:Q9LXT5
ArrayExpress:Q9LXT5 Genevestigator:Q9LXT5 Uniprot:Q9LXT5
Length = 446
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 161/301 (53%), Positives = 203/301 (67%)
Query: 17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLP 76
SRVSPKTVE A+ L+ W S+T+KPQLLE+D+ VYL +TLKKIPQ +RTNA++IPLP
Sbjct: 22 SRVSPKTVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPLP 81
Query: 77 HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEA 136
H L+ N + + PEICLI+DDRPKS LTKD MKKIK++N+P DY+ FEA
Sbjct: 82 HPLI-NPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEA 140
Query: 137 KRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLY 196
KRKLCDSYD+F D+R++ +DLKH+NWK QIEK CGSA+ +
Sbjct: 141 KRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFF 200
Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQ 256
+RTGTCSV+KVGK+SM +I ENV+A +NG+ E +P KW VRS HLKL ESLALP+YQ
Sbjct: 201 IRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLKLSESLALPIYQ 260
Query: 257 AVPDLKLKIEGVKENEGEGQD-KDSEKEN--AEDVNDHGSXXXXXXXXGRIHEVRYMDST 313
+VPDLKLKI+ + Q+ K+ E E A D + GRIHEVRYMDS
Sbjct: 261 SVPDLKLKIDAFGSGKSVVQEEKEGEVEEVVAVDGGEKSVTGKGKKKKGRIHEVRYMDSN 320
Query: 314 I 314
+
Sbjct: 321 V 321
>TAIR|locus:2041554 [details] [associations]
symbol:AT2G42650 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006412 "translation" evidence=IEA] [GO:0015934
"large ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 EMBL:CP002685
GO:GO:0006412 GO:GO:0003723 GO:GO:0003735 EMBL:AC007087
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 KO:K14775
EMBL:AY954832 IPI:IPI00543256 PIR:E84856 RefSeq:NP_181793.1
UniGene:At.36987 ProteinModelPortal:Q8S8D2 SMR:Q8S8D2 PRIDE:Q8S8D2
EnsemblPlants:AT2G42650.1 GeneID:818865 KEGG:ath:AT2G42650
TAIR:At2g42650 InParanoid:Q8S8D2 OMA:AELCLIV PhylomeDB:Q8S8D2
ProtClustDB:CLSN2683932 Genevestigator:Q8S8D2 Uniprot:Q8S8D2
Length = 372
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 152/302 (50%), Positives = 203/302 (67%)
Query: 17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLP 76
SRVSPKTV+ AVKAL+K S+T+KPQLLE+D F YL++ LKKIPQ + TNA++IPLP
Sbjct: 2 SRVSPKTVDDAVKALVKEGNEKSRTEKPQLLEEDGFFYLVVALKKIPQRNFTNAYRIPLP 61
Query: 77 HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEA 136
H L+ N +++ PE+CLI+DDRP+S LT++ K IK++N+P DY FE+
Sbjct: 62 HPLI-NTTEDSPELCLIIDDRPESGLTEEDAKKNIKSENIPITKVVKLSKLKSDYGSFES 120
Query: 137 KRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLY 196
KRKLCDSYD+F +D+RV+ +DLKH NWKEQIEK CG+A+ +
Sbjct: 121 KRKLCDSYDMFFSDRRVIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFF 180
Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQ 256
+RTG+CS +KV K+SM ++DI ENV A +NGV +++P +W +RS HLKL ESL+LP+YQ
Sbjct: 181 MRTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKLSESLSLPLYQ 240
Query: 257 AVPDLKLKIE--GVKE-NEGEGQDKDSEKENAEDVNDHGSXXXXXXXX-GRIHEVRYMDS 312
VP L+LKI+ GV+E GEG K DV+D S G+IHEVRYMDS
Sbjct: 241 TVPYLQLKIDPLGVEEVKNGEGLAKS-------DVDDSSSKSVKTKKKNGKIHEVRYMDS 293
Query: 313 TI 314
+
Sbjct: 294 NV 295
>TAIR|locus:2202260 [details] [associations]
symbol:AT1G06380 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006412 "translation" evidence=IEA] [GO:0015934
"large ribosomal subunit" evidence=IEA] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR023674
Pfam:PF00687 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412
GO:GO:0009941 GO:GO:0003723 EMBL:AC068143 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 KO:K14775
IPI:IPI00547803 PIR:F86199 RefSeq:NP_172126.1 UniGene:At.42343
ProteinModelPortal:Q9LMI1 STRING:Q9LMI1 PRIDE:Q9LMI1
EnsemblPlants:AT1G06380.1 GeneID:837149 KEGG:ath:AT1G06380
TAIR:At1g06380 eggNOG:NOG306589 HOGENOM:HOG000264992
InParanoid:Q9LMI1 OMA:ACESALF PhylomeDB:Q9LMI1
ProtClustDB:CLSN2914142 Genevestigator:Q9LMI1 Uniprot:Q9LMI1
Length = 254
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 114/242 (47%), Positives = 165/242 (68%)
Query: 17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLP 76
S+V P+ V RAVK+LLKW S S+T+ + LE D FVYLI+TLK+IPQ+ RTN IPLP
Sbjct: 16 SKVDPQNVNRAVKSLLKWWDSKSKTENSESLENDGFVYLIVTLKRIPQLDRTNPLMIPLP 75
Query: 77 HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEA 136
H L+ +++PPE+CLI+DD+ K+ +TK+A +KKI+ + +P D R E
Sbjct: 76 HPLIDLVAEDPPELCLIIDDKHKNKITKEAALKKIEAEKIPITTVIKVSKLKSDLRKLEE 135
Query: 137 KRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLY 196
+++ ++++ A++R++ ++L+H +WKEQIEK C SAL +
Sbjct: 136 EKR----FELYFAERRLMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFF 191
Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQ 256
+ TGTCSV+KV K+SMG +IAENV+AA+NG+ ++VP +W NV+ FHLKLLESLALPVYQ
Sbjct: 192 VGTGTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLKLLESLALPVYQ 251
Query: 257 AV 258
+V
Sbjct: 252 SV 253
>UNIPROTKB|F1N8V1 [details] [associations]
symbol:RSL1D1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0032880
"regulation of protein localization" evidence=IEA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR023674
Pfam:PF00687 GO:GO:0005730 GO:GO:0006412 GO:GO:0032880
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 GeneTree:ENSGT00440000038603 EMBL:AADN02023930
IPI:IPI00581244 Ensembl:ENSGALT00000004530 OMA:VTNKGCC
Uniprot:F1N8V1
Length = 430
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 83/292 (28%), Positives = 147/292 (50%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
V +AV+ALL + +S ++ LL +++ V+L++T+ KIP+V++ KIPLPH +
Sbjct: 4 VRKAVEALLAFARSKAKGDA-LLLNENESVHLLVTVWKIPRVAQV--IKIPLPHGIRAET 60
Query: 84 SDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPFEAKRKL 140
+ E+CL D P + + +++ +K+ N +Y+PFEAKR+L
Sbjct: 61 A----EVCLFTKDEPDLSAEQTESLYRKLLTQNGITSVSQVISYKTLKKEYKPFEAKRRL 116
Query: 141 CDSYDIFLADKRVVXXXXXXXXXXXXXXXXXX-XXVDLKHQNWKEQIEK-VCGSALLYLR 198
+ +D+FL+D R+ V+LK +N ++++K + G+ L
Sbjct: 117 LNRFDLFLSDDRIRRLLPSHLGKHFYEKKNRAPLSVNLKAKNLAKELQKHIQGTVLPVTN 176
Query: 199 TGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQAV 258
G C ++G M A++I +N+IAA +A+ +P+ W NV+ HLK L+S+ALP++ A
Sbjct: 177 KGCCYTTRIGHTGMKADEILDNIIAAAEVIAKKLPKNWKNVKVLHLKTLKSVALPIFTA- 235
Query: 259 PDLKLKIEGVKE--NEGEGQDKDSEKENAEDVND-HGSXXXXXXXXGRIHEV 307
+I + E E + K K+ A+ VN + HE+
Sbjct: 236 -----RISNLDELDKEPNKEKKKKPKKAAKKVNSSQNTTTAKSKAAAATHEL 282
>UNIPROTKB|O76021 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IMP] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 GO:GO:0005730 GO:GO:0006412
GO:GO:0032880 GO:GO:0003723 EMBL:CH471112 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 eggNOG:NOG247516
HOVERGEN:HBG054786 OMA:VLWKIPS OrthoDB:EOG4V9TQR EMBL:AJ007398
EMBL:AY598331 EMBL:AY154473 EMBL:BC019069 EMBL:BC112228
EMBL:BC113699 EMBL:AL049999 EMBL:AF083127 IPI:IPI00008708
PIR:T08693 RefSeq:NP_056474.2 UniGene:Hs.401842
ProteinModelPortal:O76021 SMR:O76021 IntAct:O76021
MINT:MINT-1139726 STRING:O76021 PhosphoSite:O76021
SWISS-2DPAGE:O76021 PaxDb:O76021 PRIDE:O76021 DNASU:26156
Ensembl:ENST00000571133 GeneID:26156 KEGG:hsa:26156 UCSC:uc002dbp.1
CTD:26156 GeneCards:GC16M011930 HGNC:HGNC:24534 HPA:HPA043483
neXtProt:NX_O76021 PharmGKB:PA142670966 InParanoid:O76021 KO:K14775
ChEMBL:CHEMBL1075139 GenomeRNAi:26156 NextBio:48251
ArrayExpress:O76021 Bgee:O76021 CleanEx:HS_RSL1D1
Genevestigator:O76021 GermOnline:ENSG00000171490 Uniprot:O76021
Length = 490
Score = 267 (99.0 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 70/244 (28%), Positives = 121/244 (49%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPH
Sbjct: 30 QLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPH 86
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPF 134
S+ +DS+ +ICL D P S K + +K+ N + +Y+ +
Sbjct: 87 SIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSY 142
Query: 135 EAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSAL 194
EAK +L S+D FL D R+ V+L +N +I G +
Sbjct: 143 EAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTV 202
Query: 195 LYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALP 253
L + ++G+CS +++G V M E I EN++A G++E +P KW +V+ +K +S ALP
Sbjct: 203 LNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALP 262
Query: 254 VYQA 257
++ +
Sbjct: 263 IFSS 266
>UNIPROTKB|J3QSV6 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000355674 Uniprot:J3QSV6
Length = 430
Score = 254 (94.5 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 69/244 (28%), Positives = 121/244 (49%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPH
Sbjct: 30 QLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPH 86
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPF 134
S+ +DS+ +ICL D P S K + +K+ N + +Y+ +
Sbjct: 87 SIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSY 142
Query: 135 EAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSAL 194
EAK +L S+D FL D R+ V+L +N +I G +
Sbjct: 143 EAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTV 202
Query: 195 LYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALP 253
L + ++G+CS +++G V M E I EN++A G++E +P +W +V+ +K +S ALP
Sbjct: 203 LNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLP-EWESVKLLFVKTEKSAALP 261
Query: 254 VYQA 257
++ +
Sbjct: 262 IFSS 265
>UNIPROTKB|E2R7S5 [details] [associations]
symbol:RSL1D1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
GeneTree:ENSGT00440000038603 OMA:VLWKIPS CTD:26156 KO:K14775
EMBL:AAEX03004522 RefSeq:XP_536972.2 Ensembl:ENSCAFT00000029942
GeneID:479847 KEGG:cfa:479847 Uniprot:E2R7S5
Length = 490
Score = 255 (94.8 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 73/272 (26%), Positives = 131/272 (48%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
+ +AV+ALL +S L E ++F +L++ L KIP S+ ++ LPH + +
Sbjct: 34 IRKAVEALLAHSRSRKNANGLLLNENENF-FLMVILWKIP--SKELRVRLALPHGIRSDL 90
Query: 84 SDNPPEICLIMDDRPKSNLTKDAV---MKKIKNDN--LPXXXXXXXXXXXXDYRPFEAKR 138
+D ICL+ D P NLT + KK+ N + +Y+ +EAK
Sbjct: 91 TD----ICLLTKDEP--NLTPENTERFYKKLLNKHGIKTISQIIPLRTLKKEYKAYEAKL 144
Query: 139 KLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLYL- 197
+L S+D FL D R+ V+L +N +I + G +L +
Sbjct: 145 RLLGSFDFFLTDARIRRLLPSHLGRHFYHRKKVPVPVNLLAKNLSREINECIGGTVLNIS 204
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQA 257
++G+CS ++VG M E I +N+IA +++ +P KW +V+ ++K S +LP++ +
Sbjct: 205 KSGSCSTIRVGHTGMEVEHIVDNIIAVAKRLSQKLPEKWESVKLLYVKTERSASLPIFSS 264
Query: 258 VPDLKLKIEGVK---ENEGEGQDKDSEKENAE 286
+ + +G+ + + E + K +KEN E
Sbjct: 265 FVSCQDEAKGICTRIQRKKEAKKKQKQKENRE 296
>UNIPROTKB|I3LG73 [details] [associations]
symbol:RSL1D1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015934 "large ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 Gene3D:3.40.50.790 GeneTree:ENSGT00440000038603
OMA:VLWKIPS Ensembl:ENSSSCT00000023591 Uniprot:I3LG73
Length = 487
Score = 250 (93.1 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 69/276 (25%), Positives = 132/276 (47%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
+++ + +++AV+ LL KS L E ++F +L++ L KIP S+ ++ LPH
Sbjct: 28 QLNEEQIKKAVETLLAHSKSRKNANGLLLNENENF-FLMVVLWKIP--SKELRVRLSLPH 84
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTKDAV---MKKIKNDN--LPXXXXXXXXXXXXDYR 132
+ + +D ICL D P NLT + KK+ N + +Y+
Sbjct: 85 GIRSDLTD----ICLFTKDEP--NLTPEQTERFYKKLLNKHGVKNISQIIPFRTLKKEYK 138
Query: 133 PFEAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGS 192
+EAK +L S+D F+ D R+ V+L+ +N +I G
Sbjct: 139 AYEAKLRLLGSFDFFITDSRIRRLLPSHLGRHFYNRKKVPVSVNLQAKNLSREISDCVGG 198
Query: 193 ALLYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLA 251
+L + ++G+CS +++G M + I ENV+A +++ +P KW +V+ ++K S++
Sbjct: 199 TVLNISKSGSCSTIRIGHTGMQVQHIVENVLAVAKRLSQALPEKWESVKLLYVKTERSVS 258
Query: 252 LPVYQAVPDLK---LKIEGVKENEGEGQDKDSEKEN 284
LPV+ + + ++ + + EG+ +KE+
Sbjct: 259 LPVFSSFVSSRGEAKELRATNQKKKEGKKSQKKKEH 294
>UNIPROTKB|A4FV97 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 GO:GO:0005730 GO:GO:0006412
GO:GO:0032880 GO:GO:0003723 GO:GO:0003735 GO:GO:0015934
SUPFAM:SSF56808 Gene3D:3.30.190.20 Gene3D:3.40.50.790 EMBL:BC123897
IPI:IPI00710197 UniGene:Bt.4815 ProteinModelPortal:A4FV97
STRING:A4FV97 Ensembl:ENSBTAT00000019422 eggNOG:NOG247516
GeneTree:ENSGT00440000038603 HOGENOM:HOG000133021
HOVERGEN:HBG054786 InParanoid:A4FV97 OMA:VLWKIPS OrthoDB:EOG4V9TQR
Uniprot:A4FV97
Length = 482
Score = 239 (89.2 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 63/259 (24%), Positives = 123/259 (47%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V++AV+ALL +S L E ++F +L++ L KIP S+ ++ LPH
Sbjct: 28 QLDEEQVKKAVEALLAHSRSRKNANGLLLNENENF-FLMVVLWKIP--SKELRVRLSLPH 84
Query: 78 SLLGNDSDNPPEICLIMDDRPK--SNLTKDAVMKKIKNDNLPXXXXXX-XXXXXXDYRPF 134
+ + +D +CL D P S T+ K + N + +Y+ +
Sbjct: 85 GIRSDLAD----VCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAY 140
Query: 135 EAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSAL 194
EAK +L S+D F+ D R+ V+L+ + +I G +
Sbjct: 141 EAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTV 200
Query: 195 LYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALP 253
L + ++G+CS +++G M + I ENV+A +++ +P KW +V+ +K S++LP
Sbjct: 201 LNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLP 260
Query: 254 VYQAVPDLKLKIEGVKENE 272
V+ + + + +G++ +
Sbjct: 261 VFSSFVSSQGEAKGLRTRD 279
>UNIPROTKB|Q1PG84 [details] [associations]
symbol:Rsl1d1 "PBK1" species:10092 "Mus musculus
domesticus" [GO:0005515 "protein binding" evidence=IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0032880 "regulation of protein
localization" evidence=ISO] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 MGI:MGI:1913659 GO:GO:0005730
GO:GO:0006412 GO:GO:0032880 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20 HOVERGEN:HBG054786
EMBL:DQ445383 UniGene:Mm.28291 Uniprot:Q1PG84
Length = 465
Score = 233 (87.1 bits), Expect = 6.7e-19, P = 6.7e-19
Identities = 60/237 (25%), Positives = 113/237 (47%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
+ +AV+ + K + LL + ++L++ L KIP+ + K+PLPHS+L
Sbjct: 49 IRKAVEVISNRSKPKKNNNE-LLLSGSENLFLMVILWKIPE--KELRVKVPLPHSILSES 105
Query: 84 SDNPPEICLIMDDRPKSNLTKDAVMKKI-KNDNLPXXXXXX-XXXXXXDYRPFEAKRKLC 141
SD +CL D S + KK+ K + +Y+ +EAK +L
Sbjct: 106 SD----VCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLL 161
Query: 142 DSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEK-VCGSALLYLRTG 200
S+++F+ D R+ V+L +N ++I + + G+ L + G
Sbjct: 162 GSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRG 221
Query: 201 TCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQA 257
+CS +++G M E I +N++A ++E +P KW +V+ LK +S++LP++ +
Sbjct: 222 SCSTIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSS 278
>ASPGD|ASPL0000008098 [details] [associations]
symbol:AN6698 species:162425 "Emericella nidulans"
[GO:0015934 "large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 EMBL:BN001301 GO:GO:0003735 EMBL:AACD01000112
OrthoDB:EOG4Q2HQC GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
eggNOG:NOG247516 KO:K14775 RefSeq:XP_664302.1
ProteinModelPortal:Q5AYD2 EnsemblFungi:CADANIAT00007484
GeneID:2870481 KEGG:ani:AN6698.2 HOGENOM:HOG000180881 OMA:WLASELW
Uniprot:Q5AYD2
Length = 402
Score = 140 (54.3 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 29/108 (26%), Positives = 64/108 (59%)
Query: 184 EQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAE-IVPRKWGNVRSF 242
++IEK SA ++L T + ++VG + E ++EN+ A + G+ + V + W N+++
Sbjct: 230 KEIEKALNSAPVHLAPATTAAIRVGSSNFTPEQLSENIEAVVKGLTDKFVTKGWRNIKAL 289
Query: 243 HLKLLESLALPVYQAVPDLKLK----IEGVKENEGEGQDKDSEKENAE 286
H+K ++ALP++ A +L ++ +E +++ E +G++K ++ E
Sbjct: 290 HIKGANTMALPIWLA-SELWVEETDVVETIEDGEADGKNKKRKQIEGE 336
Score = 126 (49.4 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
Identities = 39/139 (28%), Positives = 64/139 (46%)
Query: 19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKK-IPQVSRTNAFKIPLPH 77
+ K ER A K L ++ + ++ V+L+LT KK + +R KI +PH
Sbjct: 35 IKSKQSEREATAAKKTLIGDNDSDAEDTPIHNEAVWLVLTTKKHVVDKNRLKPGKISIPH 94
Query: 78 SLLGNDSDNPPEICLIMDDRPKS--NLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFE 135
SL ++ ICLI D +S N+ D + + + Y+ FE
Sbjct: 95 SL---NASPALSICLITADPQRSVKNIVSDPSFPEHLSSRIEKVIGYSKLKDR--YKSFE 149
Query: 136 AKRKLCDSYDIFLADKRVV 154
++R+L +D+FLAD R+V
Sbjct: 150 SRRQLLSEHDVFLADDRIV 168
Score = 41 (19.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 264 KIEGVKENEG-EGQDKDSEKENAEDVNDHGS 293
+IEG E + EG +K S K+ D ++ S
Sbjct: 332 QIEGEGEQKLLEGSNKKSRKQKTADDDEEAS 362
>UNIPROTKB|I3L3U9 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.30.190.20 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000573251 Bgee:I3L3U9 Uniprot:I3L3U9
Length = 296
Score = 142 (55.0 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 42/139 (30%), Positives = 70/139 (50%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ + V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPH
Sbjct: 30 QLDKEQVRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPH 86
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPF 134
S+ +DS+ +ICL D P S K + +K+ N + +Y+ +
Sbjct: 87 SIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSY 142
Query: 135 EAKRKLCDSYDIFLADKRV 153
EAK +L S+D FL D R+
Sbjct: 143 EAKLRLLSSFDFFLTDARI 161
Score = 110 (43.8 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQA 257
+ +++G V M E I EN++A G++E +P KW +V+ +K +S ALP++ +
Sbjct: 178 NAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSS 232
>POMBASE|SPAC8F11.04 [details] [associations]
symbol:SPAC8F11.04 "U3 snoRNP-associated protein
Cic1/Utp30 family (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] InterPro:IPR002143 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PomBase:SPAC8F11.04 EMBL:CU329670
GO:GO:0005730 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0030490 OrthoDB:EOG4Q2HQC GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.40.50.790 eggNOG:NOG247516 KO:K14775 PIR:T39179
RefSeq:NP_593953.1 ProteinModelPortal:Q9UT32
EnsemblFungi:SPAC8F11.04.1 GeneID:2543438 KEGG:spo:SPAC8F11.04
OMA:IEKACGS NextBio:20804451 Uniprot:Q9UT32
Length = 373
Score = 184 (69.8 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 81/287 (28%), Positives = 135/287 (47%)
Query: 20 SPKTVERAVKALLKW---LKSN----SQTQKPQLLE--QDDF--VYLIL-TLKKIPQVSR 67
S +E+ ALL++ KS+ S+++K LLE QDD V+L L TLK I +
Sbjct: 9 SDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRK 68
Query: 68 TNAFKIPLPHSLLGNDSDNPPEICLIMDD--RPKSNLTKDAVMKKIKNDNLPXXXXXXXX 125
+KI + + ++ + S E CLI+ D R +L +A + K+
Sbjct: 69 LIPYKIAIKNPVIPSSS----EACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLS 118
Query: 126 XXXXDYRPFEAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQ 185
+ +E KR+L D +DIFLAD RV+ V + + EQ
Sbjct: 119 KLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKIS-KGTAEQ 177
Query: 186 IEKVCGSAL--LYLRTGTCS--VLKVGKVSMGAEDIAENVIAAINGVAE-IVPRKWGNVR 240
+++ SA Y + CS ++K G VS + ++AENV + + V++ IVP +
Sbjct: 178 LKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIA 237
Query: 241 SFHLKLLESLALPVYQAVPDLKLKIEGVKE---NEGEGQDKDSEKEN 284
S HLK +S+A+P++ P+LK I ++ E + S++E+
Sbjct: 238 SIHLKTSQSIAIPLWNN-PNLKELIASSRKVVTKETASSKRKSDEES 283
>UNIPROTKB|I3L3C4 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808
Gene3D:3.40.50.790 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000571988 Bgee:I3L3C4 Uniprot:I3L3C4
Length = 158
Score = 141 (54.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 42/133 (31%), Positives = 67/133 (50%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
V +AV ALL KS LL +++ ++L++ L KIP S+ ++ LPHS+ +D
Sbjct: 2 VRKAVDALLTHCKSRKNNYG-LLLNENESLFLMVVLWKIP--SKELRVRLTLPHSIR-SD 57
Query: 84 SDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPXXXXXXXXXXXXDYRPFEAKRKL 140
S+ +ICL D P S K + +K+ N + +Y+ +EAK +L
Sbjct: 58 SE---DICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRL 114
Query: 141 CDSYDIFLADKRV 153
S+D FL D R+
Sbjct: 115 LSSFDFFLTDARI 127
>FB|FBgn0032050 [details] [associations]
symbol:CG13096 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR023674
Pfam:PF00687 EMBL:AE014134 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 Gene3D:3.30.190.20
eggNOG:NOG247516 GeneTree:ENSGT00440000038603 KO:K14775
EMBL:AY069795 RefSeq:NP_609236.2 UniGene:Dm.358
ProteinModelPortal:Q9VLK2 SMR:Q9VLK2 MINT:MINT-1333691
STRING:Q9VLK2 PaxDb:Q9VLK2 PRIDE:Q9VLK2 EnsemblMetazoa:FBtr0079698
GeneID:34183 KEGG:dme:Dmel_CG13096 UCSC:CG13096-RA
FlyBase:FBgn0032050 InParanoid:Q9VLK2 OMA:SYKIPSC OrthoDB:EOG4K98V4
PhylomeDB:Q9VLK2 ChiTaRS:CG13096 GenomeRNAi:34183 NextBio:787285
Bgee:Q9VLK2 Uniprot:Q9VLK2
Length = 681
Score = 151 (58.2 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 61/240 (25%), Positives = 98/240 (40%)
Query: 28 VKALLKWLKSNSQTQKPQLLEQDDFVYLILTLK-KIPQVSRTNAFKIPLPHSLLGNDSDN 86
V A LK + S +K D+ Y++ KIP + K+ L HSL+G D D
Sbjct: 277 VCAALKSVVSEEVEKKKNTSIFSDYRYVLQVCSYKIPSCPK-RMVKLNLKHSLVGKDDD- 334
Query: 87 PPEICLIMDDRPKS-----NLTKDAVMKKIKNDNLPXXXXXX-XXXXXXDYRPFEAKRKL 140
+ LI+ D + + TK ++ + + FEAKRK
Sbjct: 335 ---VALIVPDLQRGAKFDYDPTKQHYEDMLREAGVKQRLTVVPFNQLRNEMGSFEAKRKF 391
Query: 141 CDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWK--EQIEK-VCGSALLYL 197
+SYD L D R+ + L N K +++ + + +A L
Sbjct: 392 LNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQL 451
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKL--LESLALPVY 255
G + VG + AE +AEN++ I + E+ P N+RS +LK+ + ALP+Y
Sbjct: 452 SKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLKIDITGTSALPLY 511
Score = 49 (22.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 257 AVPDLKLKIEGVKENEGEGQDKDSEKENAEDVND 290
A D + ++E +++ GE D+D E + +D ++
Sbjct: 610 AESDEEEEVEEAEDSAGESGDEDEEGHDGDDTDE 643
Score = 47 (21.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 257 AVPDLKLKIEGVKENEGEGQDKDSEKENAEDVND 290
AVP K + KE+ EG D+E + E+V +
Sbjct: 591 AVPAKKAR----KESSSEGAKADAESDEEEEVEE 620
Score = 44 (20.5 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 266 EGVKENEGEGQDKDSEKENAEDVND 290
+G +E E +D D + E+ +D D
Sbjct: 637 DGDDTDEDEDEDDDDDNEDGDDDED 661
Score = 44 (20.5 bits), Expect = 4.3e-08, Sum P(2) = 4.3e-08
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 267 GVKENEG-EGQDKDS-EKENAEDVNDHG 292
G ++ EG +G D D E E+ +D N+ G
Sbjct: 629 GDEDEEGHDGDDTDEDEDEDDDDDNEDG 656
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 271 NEGEGQDKDSEKENAEDVND 290
++ E +D D E ++ ED +D
Sbjct: 657 DDDEDEDDDEEDDDEEDDDD 676
Score = 38 (18.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 270 ENEGEGQDKDSEK-ENAEDVND 290
E+E E D D+E ++ ED +D
Sbjct: 643 EDEDEDDDDDNEDGDDDEDEDD 664
>RGD|1359295 [details] [associations]
symbol:Rsl1d1 "ribosomal L1 domain containing 1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] InterPro:IPR002143
InterPro:IPR016094 InterPro:IPR023674 Pfam:PF00687
InterPro:IPR001921 RGD:1359295 GO:GO:0005730 GO:GO:0006412
GO:GO:0032880 GO:GO:0003723 GO:GO:0003735 GO:GO:0015934
SUPFAM:SSF56808 eggNOG:COG1358 Gene3D:3.30.190.20
GeneTree:ENSGT00440000038603 OrthoDB:EOG4V9TQR CTD:26156 KO:K14775
PRINTS:PR00882 EMBL:AY310144 IPI:IPI00368458 RefSeq:NP_001008876.1
UniGene:Rn.154542 Ensembl:ENSRNOT00000044593 GeneID:302898
KEGG:rno:302898 UCSC:RGD:1359295 InParanoid:Q7TQ86 NextBio:650292
Genevestigator:Q7TQ86 Uniprot:Q7TQ86
Length = 540
Score = 154 (59.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 41/164 (25%), Positives = 74/164 (45%)
Query: 75 LPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKI-KNDNLPXXXXXX-XXXXXXDYR 132
LPHS+L S E+CL D S + KK+ K + +Y+
Sbjct: 54 LPHSILSESS----EVCLFTKDECDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYK 109
Query: 133 PFEAKRKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEK-VCG 191
+EAK +L S+D+F+AD+R+ V+L +N ++I + + G
Sbjct: 110 AYEAKLRLLGSFDVFIADERIRRHLPTHIGRHFYQRKKVPVSVNLLAKNLSKEINRTITG 169
Query: 192 SALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRK 235
+ L + G+CS +++G M + I EN++ ++E +P +
Sbjct: 170 TVLNISKRGSCSTIRIGHTGMEIQHIIENILTVSEMLSEKLPEE 213
>POMBASE|SPCC306.07c [details] [associations]
symbol:SPCC306.07c "U3 snoRNP-associated protein
Cic1/Utp30 family (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0015934 "large ribosomal subunit"
evidence=IEA] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISO] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR023674 Pfam:PF00687 PomBase:SPCC306.07c GO:GO:0005730
EMBL:CU329672 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0042273 GO:GO:0006364 OrthoDB:EOG4Q2HQC GO:GO:0015934
SUPFAM:SSF56808 Gene3D:3.30.190.20 eggNOG:NOG247516 PIR:T41285
RefSeq:NP_587815.1 ProteinModelPortal:Q9Y7R7
EnsemblFungi:SPCC306.07c.1 GeneID:2538926 KEGG:spo:SPCC306.07c
NextBio:20800103 Uniprot:Q9Y7R7
Length = 284
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/247 (20%), Positives = 107/247 (43%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ K +E+ ++ALL+ ++S+ KP +E++ + T + + + S K+ LPH
Sbjct: 16 KIDIKLLEKTIRALLQHIRSSD---KP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPH 70
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPXXXXXXXXXXXXDYRPFEAK 137
++ + + CLI+ D S T ++++ D + Y+ K
Sbjct: 71 RIM-----HVTDACLIVKD---SQQTYQDLVEQQGLDEV-ITKVLSIPRLKLKYKTIREK 121
Query: 138 RKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDL--KHQNWKEQIEKVCGSALL 195
+L DS+++FL D RV+ + + K + + Q+ + S L
Sbjct: 122 CELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYL 181
Query: 196 YLRTGTCSVLKVGKVSMGAEDIAENVIAAINGV-AEIVPRKWGNVRSFHLKLLESLALPV 254
L GT + G + E + EN+ + + +P+ W + + +K +S +LP+
Sbjct: 182 KLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPI 241
Query: 255 YQAVPDL 261
+ + +L
Sbjct: 242 WTSDTNL 248
>UNIPROTKB|I3L234 [details] [associations]
symbol:RSL1D1 "Ribosomal L1 domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0015934 "large
ribosomal subunit" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR002143 InterPro:IPR023674 Pfam:PF00687
GO:GO:0005730 GO:GO:0006412 GO:GO:0003723 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 HGNC:HGNC:24534 EMBL:AC010654
Ensembl:ENST00000573791 Bgee:I3L234 Uniprot:I3L234
Length = 98
Score = 106 (42.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 56 ILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKND 114
++ L KIP S+ ++ LPHS+ +DS+ +ICL D P S K + +K+ N
Sbjct: 1 MVVLWKIP--SKELRVRLTLPHSIR-SDSE---DICLFTKDEPNSTPEKTEQFYRKLLNK 54
Query: 115 N--LPXXXXXXXXXXXXDYRPFEAKRKLCDSYDIFLADKRV 153
+ +Y+ +EAK +L S+D FL D R+
Sbjct: 55 HGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARI 95
>FB|FBgn0036213 [details] [associations]
symbol:RpL10Ab "Ribosomal protein L10Ab" species:7227
"Drosophila melanogaster" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0000022 "mitotic spindle elongation"
evidence=IMP] [GO:0051298 "centrosome duplication" evidence=IMP]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 Prosite:PS01199
EMBL:AE014296 GO:GO:0051298 GO:GO:0005811 GO:GO:0006412
GO:GO:0003723 GO:GO:0003735 GO:GO:0000022 GO:GO:0015934
SUPFAM:SSF56808 KO:K02865 eggNOG:COG0081 Gene3D:3.30.190.20
Gene3D:3.40.50.790 OMA:GPRNKMP EMBL:BT014654 RefSeq:NP_648514.1
UniGene:Dm.23143 ProteinModelPortal:Q9VTP4 SMR:Q9VTP4 IntAct:Q9VTP4
MINT:MINT-1551463 STRING:Q9VTP4 PaxDb:Q9VTP4 PRIDE:Q9VTP4
EnsemblMetazoa:FBtr0076032 GeneID:39338 KEGG:dme:Dmel_CG7283
CTD:39338 FlyBase:FBgn0036213 GeneTree:ENSGT00390000008767
InParanoid:Q9VTP4 OrthoDB:EOG4T76KC PhylomeDB:Q9VTP4
ChiTaRS:RpL10Ab GenomeRNAi:39338 NextBio:813157 Bgee:Q9VTP4
GermOnline:CG7283 Uniprot:Q9VTP4
Length = 217
Score = 118 (46.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 138 RKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQ-NWKEQIEKVCGSALLY 196
+KL SYD FLA + ++ L HQ + +IE+V +
Sbjct: 101 KKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPAL--LSHQESMIGKIEEVKSTIKFQ 158
Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
++ C + VG V M ++++A+NV +IN + ++ + W NVRS H+K
Sbjct: 159 MKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVK 207
>FB|FBgn0038281 [details] [associations]
symbol:RpL10Aa "Ribosomal protein L10Aa" species:7227
"Drosophila melanogaster" [GO:0006412 "translation" evidence=ISS]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS]
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR002143 InterPro:IPR016094 InterPro:IPR016095
InterPro:IPR023674 Pfam:PF00687 PIRSF:PIRSF002155 EMBL:AE014297
GO:GO:0006911 GO:GO:0022008 GO:GO:0006412 GO:GO:0003723
GO:GO:0003735 GO:GO:0015934 SUPFAM:SSF56808 KO:K02865
eggNOG:COG0081 Gene3D:3.30.190.20 Gene3D:3.40.50.790
GeneTree:ENSGT00390000008767 EMBL:AY113239 RefSeq:NP_650410.1
UniGene:Dm.13335 SMR:Q9VFE0 STRING:Q9VFE0
EnsemblMetazoa:FBtr0083024 GeneID:41811 KEGG:dme:Dmel_CG3843
UCSC:CG3843-RA CTD:41811 FlyBase:FBgn0038281 InParanoid:Q9VFE0
OrthoDB:EOG476HGD ChiTaRS:RpL10Aa GenomeRNAi:41811 NextBio:825679
Uniprot:Q9VFE0
Length = 216
Score = 117 (46.2 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 29/116 (25%), Positives = 55/116 (47%)
Query: 138 RKLCDSYDIFLADKRVVXXXXXXXXXXXXXXXXXXXXVDLKHQNWKEQIEKVCGSALLYL 197
+KL +YD+FLA + ++ + + ++ +I K+ + ++
Sbjct: 101 KKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPL-ARGESMSSKI-KILSTKKKHM 158
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALP 253
+ C + VG V M E++A N+ +IN + ++ W NVRS H+K SL +P
Sbjct: 159 KRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNVRSLHIK--SSLGVP 212
>WB|WBGene00009993 [details] [associations]
symbol:F53F4.11 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0015934 "large ribosomal subunit" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] InterPro:IPR002143 InterPro:IPR016094
InterPro:IPR016095 InterPro:IPR023674 Pfam:PF00687 GO:GO:0008340
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006412 GO:GO:0003723 GO:GO:0040035 GO:GO:0003735
GO:GO:0015934 SUPFAM:SSF56808 EMBL:Z77663 Gene3D:3.30.190.20
Gene3D:3.40.50.790 eggNOG:NOG247516 GeneTree:ENSGT00440000038603
PIR:T22585 RefSeq:NP_506375.1 ProteinModelPortal:Q20720
DIP:DIP-24448N MINT:MINT-1046410 STRING:Q20720 PaxDb:Q20720
EnsemblMetazoa:F53F4.11.1 EnsemblMetazoa:F53F4.11.2 GeneID:179849
KEGG:cel:CELE_F53F4.11 UCSC:F53F4.11.1 CTD:179849 WormBase:F53F4.11
HOGENOM:HOG000019405 InParanoid:Q20720 OMA:QANEVLT NextBio:907112
Uniprot:Q20720
Length = 543
Score = 85 (35.0 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 42/142 (29%), Positives = 64/142 (45%)
Query: 26 RAVKALLKWL-KSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDS 84
+A+ AL K+ + N ++ P + D + L +T KK + KI LPHS +
Sbjct: 178 QAISALKKFFAEKNEKSLFPDI---DYALNLSVTYKKSAITTDQGKIKIKLPHS---TRN 231
Query: 85 DNPPEICLIMDDRPKSNLTK-DA-VMK-------KIKNDN-LPXXXXXXXXXXXXDYR-- 132
N +C+IM D +S+ K D V K KI+ D+ L R
Sbjct: 232 INNTSVCVIMPDLDQSDAAKRDFDVEKQSREWAEKIEVDHGLTSAHIAKILTKREVERIA 291
Query: 133 -PFEAKRKLCDSYDIFLADKRV 153
++ KR L +YD+FL+D RV
Sbjct: 292 HTYKDKRSLASTYDVFLSDGRV 313
Score = 75 (31.5 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESL-ALPVYQ---AV 258
S + VG + + D+ EN+ + +A P + N+RS +L + +LP+Y +
Sbjct: 363 SCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKPSLPIYVDNGSA 422
Query: 259 PDLKLKIEGVKENEG--EGQDKDS 280
++ L V++N E DK S
Sbjct: 423 TEITLPTGSVRDNNPLKETSDKCS 446
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 431 293 0.00091 115 3 11 23 0.45 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 602 (64 KB)
Total size of DFA: 203 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.32u 0.12s 23.44t Elapsed: 00:00:01
Total cpu time: 23.32u 0.12s 23.44t Elapsed: 00:00:01
Start: Thu May 9 21:25:47 2013 End: Thu May 9 21:25:48 2013