BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014066
(431 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RCE6|RL1D1_PONAB Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1
PE=2 SV=2
Length = 490
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 215/437 (49%), Gaps = 46/437 (10%)
Query: 3 TTVAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI 62
T+ + P + P+A ++ + V +AV ALL KS + LL +++ ++L++ L KI
Sbjct: 17 TSTSTPAA--PTARKQLDKEQVRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKI 73
Query: 63 PQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPIT 119
P S+ ++ LPHS+ + D ICL D P S K + +K+ N + ++
Sbjct: 74 P--SKELRVRLTLPHSIRSDSED----ICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVS 127
Query: 120 KVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKH 179
++I + LK +Y+ +EAK +L S+D FL D R+ LLP L+G+HF+++KK+PV V+L
Sbjct: 128 QIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLS 187
Query: 180 QNWKEQIEKVCGSALLYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGN 238
+N +I G +L + ++G+CS +++G V M E I EN++A G++E +P KW +
Sbjct: 188 KNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWES 247
Query: 239 VRSFHLKLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLK 298
V+ +K +S ALP++ + N E + + ++ ++ +
Sbjct: 248 VKLLFVKTEKSAALPIFSSFVS----------NWDEATKRSLLNKKKKEARRKRRERNFE 297
Query: 299 KKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDV--GESEDGEDSEDGKMSSGDILGKK 356
K+K R + + T VL +D++ + G+ V ES+ + E GK G GK
Sbjct: 298 KQKERKKKRQQARKT-ASVLSKDDVA-PESGDTTVKKPESKKEQTPEHGKKKRGR--GKA 353
Query: 357 RKKGDKERAQKLPKKV-----------------AKVKKDELSSDMKNEDVGKQKKQKKVG 399
+ K E ++P+ V A KK S + GK++K
Sbjct: 354 QVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPAS 413
Query: 400 LSLKNDEEKSSGKEKKK 416
+ K E ++ GK +K
Sbjct: 414 ETPKAAESETPGKSPEK 430
>sp|O76021|RL1D1_HUMAN Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1
PE=1 SV=3
Length = 490
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 215/437 (49%), Gaps = 46/437 (10%)
Query: 3 TTVAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI 62
T+ + P + P+A ++ + V +AV ALL KS + LL +++ ++L++ L KI
Sbjct: 17 TSTSTPAA--PTARKQLDKEQVRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKI 73
Query: 63 PQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTK-DAVMKKIKNDN--LPIT 119
P S+ ++ LPHS+ + D ICL D P S K + +K+ N + ++
Sbjct: 74 P--SKELRVRLTLPHSIRSDSED----ICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVS 127
Query: 120 KVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKH 179
++I + LK +Y+ +EAK +L S+D FL D R+ LLP L+G+HF+++KK+PV V+L
Sbjct: 128 QIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLS 187
Query: 180 QNWKEQIEKVCGSALLYL-RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGN 238
+N +I G +L + ++G+CS +++G V M E I EN++A G++E +P KW +
Sbjct: 188 KNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWES 247
Query: 239 VRSFHLKLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLK 298
V+ +K +S ALP++ + N E + + ++ ++ +
Sbjct: 248 VKLLFVKTEKSAALPIFSSFVS----------NWDEATKRSLLNKKKKEARRKRRERNFE 297
Query: 299 KKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDV--GESEDGEDSEDGKMSSGDILGKK 356
K+K R + + T VL +D++ + G+ V ES+ + E GK G GK
Sbjct: 298 KQKERKKKRQQARKT-ASVLSKDDVA-PESGDTTVKKPESKKEQTPEHGKKKRGR--GKA 353
Query: 357 RKKGDKERAQKLPKKV-----------------AKVKKDELSSDMKNEDVGKQKKQKKVG 399
+ K E ++P+ V A KK S + GK++K
Sbjct: 354 QVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPAS 413
Query: 400 LSLKNDEEKSSGKEKKK 416
+ K E ++ GK +K
Sbjct: 414 ETPKAAESETPGKSPEK 430
>sp|A4FV97|RL1D1_BOVIN Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1
PE=2 SV=1
Length = 482
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 137/239 (57%), Gaps = 11/239 (4%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGND 83
V++AV+ALL +S L E ++F +L++ L KIP S+ ++ LPH + +
Sbjct: 34 VKKAVEALLAHSRSRKNANGLLLNENENF-FLMVVLWKIP--SKELRVRLSLPHGIRSDL 90
Query: 84 SDNPPEICLIMDDRPK-SNLTKDAVMKKIKNDN--LPITKVIKITKLKTDYRPFEAKRKL 140
+D +CL D P S+ + KK+ N++ I+++I LK +Y+ +EAK +L
Sbjct: 91 AD----VCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRL 146
Query: 141 CDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL-RT 199
S+D F+ D R+ LLP LG+HF+ +KK+PV V+L+ + +I G +L + ++
Sbjct: 147 LGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKS 206
Query: 200 GTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQAV 258
G+CS +++G M + I ENV+A +++ +P KW +V+ +K S++LPV+ +
Sbjct: 207 GSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSF 265
>sp|Q9UT32|RL1DB_SCHPO Putative ribosome biogenesis protein C8F11.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC8F11.04 PE=3 SV=1
Length = 373
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 139/237 (58%), Gaps = 24/237 (10%)
Query: 38 NSQTQKPQLLE--QDDF--VYLIL-TLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICL 92
+S+++K LLE QDD V+L L TLK I + +KI + + ++ + S E CL
Sbjct: 34 DSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSS----EACL 89
Query: 93 IMDD--RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLAD 150
I+ D R +L +A + K+ +T+VI ++KLK + +E KR+L D +DIFLAD
Sbjct: 90 IVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLAD 143
Query: 151 KRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQI--EKVCGSALLYLRTGTCS--VLK 206
RV+P+LP++LGK F++K K+PVPV + + EQ+ E V Y + CS ++K
Sbjct: 144 DRVIPMLPRILGKTFYQKSKVPVPVKI-SKGTAEQLKREVVSAYGATYFNSAPCSSFMIK 202
Query: 207 VGKVSMGAEDIAENVIAAINGVA-EIVPRKWGNVRSFHLKLLESLALPVYQAVPDLK 262
G VS + ++AENV + + V+ IVP + S HLK +S+A+P++ P+LK
Sbjct: 203 CGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNN-PNLK 258
>sp|Q9Y7R7|RL1DA_SCHPO Putative ribosome biogenesis protein C306.07c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC306.07c PE=3 SV=1
Length = 284
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 128/247 (51%), Gaps = 17/247 (6%)
Query: 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPH 77
++ K +E+ ++ALL+ ++S + KP +E++ + T + + + S K+ LPH
Sbjct: 16 KIDIKLLEKTIRALLQHIRS---SDKP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPH 70
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAK 137
++ + + CLI+ D S T ++++ D + ITKV+ I +LK Y+ K
Sbjct: 71 RIM-----HVTDACLIVKD---SQQTYQDLVEQQGLDEV-ITKVLSIPRLKLKYKTIREK 121
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDL--KHQNWKEQIEKVCGSALL 195
+L DS+++FL D RV+ +P L+GK F +KK P P+ + K + + Q+ + S L
Sbjct: 122 CELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYL 181
Query: 196 YLRTGTCSVLKVGKVSMGAEDIAENVIAAING-VAEIVPRKWGNVRSFHLKLLESLALPV 254
L GT + G + E + EN+ + + +P+ W + + +K +S +LP+
Sbjct: 182 KLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPI 241
Query: 255 YQAVPDL 261
+ + +L
Sbjct: 242 WTSDTNL 248
>sp|Q9VLK2|Y3096_DROME Ribosomal L1 domain-containing protein CG13096 OS=Drosophila
melanogaster GN=CG13096 PE=1 SV=1
Length = 681
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 51 DFVYLI-LTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDR---------PKS 100
D+ Y++ + KIP + K+ L HSL+G D D + LI+ D P
Sbjct: 300 DYRYVLQVCSYKIPSCPK-RMVKLNLKHSLVGKDDD----VALIVPDLQRGAKFDYDPTK 354
Query: 101 NLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKL 160
+D + + L V+ +L+ + FEAKRK +SYD L D R+
Sbjct: 355 QHYEDMLREAGVKQRL---TVVPFNQLRNEMGSFEAKRKFLNSYDYLLCDGRLSGQATAF 411
Query: 161 LGKHFFKKKKIPVPVDLKHQNWK---EQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDI 217
LGK+ K + + + L N K E + +A L G + VG + AE +
Sbjct: 412 LGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQLSKGDLIAVPVGNHEITAEQL 471
Query: 218 AENVIAAINGVAEIVPRKWGNVRSFHLK--LLESLALPVY 255
AEN++ I + E+ P N+RS +LK + + ALP+Y
Sbjct: 472 AENILLVIKQLQEVYPGGLANIRSMYLKIDITGTSALPLY 511
>sp|Q9VTP4|R10AB_DROME 60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab
PE=2 SV=2
Length = 217
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGT 201
SYD FLA + ++ +P+LLG K K P L HQ + +IE+V + ++
Sbjct: 106 SYDAFLASESLIKQIPRLLGPGLNKAGKFPAL--LSHQESMIGKIEEVKSTIKFQMKKVL 163
Query: 202 CSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
C + VG V M ++++A+NV +IN + ++ + W NVRS H+K
Sbjct: 164 CLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVK 207
>sp|Q963B6|RL10A_SPOFR 60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2
SV=1
Length = 217
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGTC 202
YD FLA + ++ +P+LLG K K P L HQ + ++I++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRLLGPGLNKAGKFPGL--LSHQESMTQKIDEVKATIKFQMKKVLC 164
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M +++A+NV +IN + ++ + W NVRS H+K
Sbjct: 165 LSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 207
>sp|P53028|RL10A_TRYBR 60S ribosomal protein L10a OS=Trypanosoma brucei rhodesiense
GN=RPL10A PE=2 SV=1
Length = 214
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 140 LCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRT 199
+C+ YD FL + ++ +P+L+G H + K P V ++++ +++ ++ + L+
Sbjct: 100 MCNQYDAFLCSESIIKTVPRLVGPHMHRVGKFPT-VCAQNESLPDKVLELQSTVKFQLKK 158
Query: 200 GTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
C VG V M + + +NV+ AIN + ++ + W N++S ++K
Sbjct: 159 VLCLGTCVGHVDMTEDQVRQNVVMAINFLVSLLKKNWQNLKSAYIK 204
>sp|Q4R5P3|RL10A_MACFA 60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2
SV=3
Length = 217
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P P+ ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSPLT-HNENMVAKVDEVKSTIKFQMKRVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M +++ N+ A+N + ++ + W NVR+ ++K
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIK 207
>sp|Q9SW75|RL10A_CHLRE 60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A
PE=2 SV=1
Length = 213
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTC 202
+Y FLA V+ +P+LLG K K P P++ +N +E + S L+ C
Sbjct: 104 AYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN---KNLEEMVLDTKCSIKFQLKKVLC 160
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ V V M +I N++ AIN + ++ + W NVR ++K
Sbjct: 161 MGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIK 203
>sp|Q6PC69|RL10A_DANRE 60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1
Length = 216
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENLGTKVDEVKSTIKFQMKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M E++ N+ A+N + ++ + W NVR+ ++K
Sbjct: 165 AVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIK 206
>sp|P59230|R10A2_ARATH 60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB
PE=2 SV=1
Length = 216
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGT 201
SY FLA + V+ +P+LLG K K P V HQ + + ++ + + L+
Sbjct: 105 SYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKATVKFQLKKVL 162
Query: 202 CSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
C + VG +SM + + +NV ++N + ++ + W NVR +LK
Sbjct: 163 CMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206
>sp|Q9UWR8|RL1_PYRAB 50S ribosomal protein L1P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl1p PE=3 SV=1
Length = 219
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A+ ++P + + LGK+ + K+PV V N + +EK+ + + L
Sbjct: 101 RKLAKKYDFFIAEAPLMPKIGRYLGKYLGPRNKMPVVVPPTMSNLEPIVEKLKKTVRIQL 160
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG M E+IAEN+ +N + + R ++S ++K
Sbjct: 161 KNNPVVHAPVGTEKMSDEEIAENIETVLNAIIGKLERGESQIKSVYVK 208
>sp|Q90YV8|RL10A_ICTPU 60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2
SV=1
Length = 216
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENLNTKVDEVKSTIKFQMKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M +++ N+ A+N + ++ + W NVR+ ++K
Sbjct: 165 AVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIK 206
>sp|Q7RZS0|RL10A_NEUCR 60S ribosomal protein L10a OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rpl-10a PE=3 SV=1
Length = 217
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD F+A + ++ +P+LLG K K P PV + ++ +V + L+ C
Sbjct: 107 YDAFVASEALIKQIPRLLGPGLSKAGKFPTPVS-HSDDLTGKLNEVKSTIKFQLKKVLCM 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M E + N++ AIN + ++ + W NV S +K
Sbjct: 166 GVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIK 207
>sp|O57782|RL1_PYRHO 50S ribosomal protein L1P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl1p PE=3 SV=1
Length = 219
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A+ ++P + + LG++ + K+PV V N + +EK+ + + L
Sbjct: 101 RKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNIEPIVEKLKKTVRIQL 160
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG M E +AEN+ A +N + + R +RS ++K
Sbjct: 161 KDNPVVHAPVGTEKMSDEQLAENIEAVLNAIIGKLERGENQIRSVYVK 208
>sp|Q8VZB9|R10A1_ARATH 60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA
PE=2 SV=1
Length = 216
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGTC 202
Y FLA + V+ +P+LLG K K P V HQ + + ++ + + L+ C
Sbjct: 106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLC 163
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG +SM + I +NV ++N + ++ + W NVR +LK
Sbjct: 164 MGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206
>sp|Q86L05|RL10A_DICDI 60S ribosomal protein L10a OS=Dictyostelium discoideum GN=rpl10a
PE=1 SV=1
Length = 217
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKH-QNWKEQIEKVCGSALLYLRTGTC 202
YD FLA + ++ +PKLLG K K P L H ++ +I V + L+ C
Sbjct: 107 YDAFLASESILRQVPKLLGPGLNKVGKFPTL--LTHSEDMASKINDVKSTVKFQLKKVLC 164
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG + + ++A N+I +IN + ++ + W N+++ ++K
Sbjct: 165 LAVAVGHIELTEREVATNIIQSINFLVSLLKKGWQNIKTLYVK 207
>sp|Q7ZYS8|RL10A_XENLA 60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1
Length = 217
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENLVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V + E++ N+ +IN + ++ + W NVR+ ++K
Sbjct: 166 AVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIK 207
>sp|P53026|RL10A_MOUSE 60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3
Length = 217
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M +++ N+ A+N + ++ + W NVR+ ++K
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIK 207
>sp|Q8TZJ9|RL1_PYRFU 50S ribosomal protein L1P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl1p PE=1 SV=1
Length = 216
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A+ ++P + + LG++ + K+PV V + +EK+ + + L
Sbjct: 98 RKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQL 157
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG M E+IAEN+ A +N + + R V+S ++K
Sbjct: 158 KNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVK 205
>sp|O14363|RL1A_SCHPO 60S ribosomal protein L1-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl1a PE=1 SV=1
Length = 216
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD F+A + ++ +P+LLG K K P PV + + IE V + L+ C
Sbjct: 106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIE-VKSTIKFQLKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M E +A N+ AIN + ++ + W N+ S +K
Sbjct: 165 GVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIK 206
>sp|P62907|RL10A_RAT 60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2
Length = 217
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M +++ N+ A+N + ++ + W NVR+ ++K
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIK 207
>sp|P62906|RL10A_HUMAN 60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2
Length = 217
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M +++ N+ A+N + ++ + W NVR+ ++K
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIK 207
>sp|Q5E9E6|RL10A_BOVIN 60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3
Length = 217
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD FLA + ++ +P++LG K K P + ++N ++++V + ++ C
Sbjct: 107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLT-HNENMVAKVDEVKSTIKFQMKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M +++ N+ A+N + ++ + W NVR+ ++K
Sbjct: 166 AVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIK 207
>sp|A7IAK4|RL1_METB6 50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8)
GN=rpl1p PE=3 SV=1
Length = 214
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 133 PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGS 192
P EA+R + SY FLA+ V+P + + LG + ++P+P+ + + +E++ S
Sbjct: 94 PREARR-VASSYKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIP-GQTDIRPIVERLRNS 151
Query: 193 ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ + T KVG +M E ++EN+ A + V ++ + NVRS +K
Sbjct: 152 VKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQGHLNVRSVFVK 204
>sp|Q9N4I4|RL10A_CAEEL 60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a
PE=2 SV=1
Length = 216
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTC 202
SYD F+A + ++ +P++LG K K P V ++ + + +++ + ++ C
Sbjct: 105 SYDAFIASESLIKQIPRILGPGLNKAGKFPSVVT-HGESLQSKSDEIRATVKFQMKKVLC 163
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V + E++ N+ +IN + ++ + W NVRS ++K
Sbjct: 164 LSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIK 206
>sp|A0RX07|RL1_CENSY 50S ribosomal protein L1P OS=Cenarchaeum symbiosum (strain A)
GN=rpl1p PE=3 SV=1
Length = 215
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 126 KLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQ 185
KL T+ R RK + YD FLAD +++P++ K+LG+ + K+P PV + +
Sbjct: 86 KLGTNKRE---SRKFINRYDFFLADTQLMPVVGKVLGQILGPRGKMPTPVAF-NAPIESF 141
Query: 186 IEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+E+ S + R K+G +M D+ N +A V + +P+ NVR +K
Sbjct: 142 LERFRSSVRVRARASLSLSCKIGDETMDDADLVANAMAVYGTVEKKLPQGSKNVRQIMVK 201
>sp|A2STT9|RL1_METLZ 50S ribosomal protein L1P OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rpl1p PE=3 SV=1
Length = 213
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 133 PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGS 192
P EA RK+ YD FLA+ V+PL+ + LG+ + K+P P+ Q+ +E++ S
Sbjct: 93 PREA-RKMAGQYDFFLAETAVMPLVGRWLGQRLGPRGKMPQPIP-PTQDITPIVERLRNS 150
Query: 193 ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ + +KVG M E+++EN+ A + V + N+RS ++K
Sbjct: 151 VKIRSKDRLNMSVKVGNTGMTVEEVSENIDAVVKRVVGRLESGELNIRSVYVK 203
>sp|P59231|R10A3_ARATH 60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC
PE=2 SV=1
Length = 217
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ-NWKEQIEKVCGSALLYLRTGTC 202
+ FLA + V+ +P+LLG K K P V HQ + + ++ + + L+ C
Sbjct: 107 FHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLC 164
Query: 203 SVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG +SM + I +NV ++N + ++ + W NVR +LK
Sbjct: 165 MGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 207
>sp|Q5JH35|RL1_PYRKO 50S ribosomal protein L1P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl1p PE=3 SV=1
Length = 216
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL YD F+A ++P + + LG++ + K+PV V N + +EK+ + + L
Sbjct: 98 RKLAKKYDFFIAAAPLMPKIGRYLGRYLGPRNKMPVVVPPTMTNLEPIVEKLKKTVRIQL 157
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ +G M E +AEN A +N + + R V+S ++K
Sbjct: 158 KNNPVVHAPIGTEDMDDEKLAENAEAVLNAIINKLERGENQVKSVYIK 205
>sp|O74836|RL1B_SCHPO 60S ribosomal protein L1-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl1b PE=1 SV=1
Length = 216
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
YD F+A + ++ +P+LLG K K P PV + +I +V + L+ C
Sbjct: 106 YDAFIASEVLIKQIPRLLGPGLSKAGKFPSPVS-HADDLYGKITEVKSTIKFQLKKVLCL 164
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M E + N++ A+N + ++ + W N+ S +K
Sbjct: 165 GVAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVK 206
>sp|Q755D9|RL10A_ASHGO 60S ribosomal protein L10a OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL10A PE=3
SV=1
Length = 217
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYSKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVY 255
+ VG V M + + ++ ++N + ++ + W NV S +K A +Y
Sbjct: 166 AVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217
>sp|O52704|RL1_METTL 50S ribosomal protein L1P OS=Methanococcus thermolithotrophicus
GN=rpl1p PE=1 SV=1
Length = 213
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
+K+ + +D F+A ++PL+ K LG + K+P PV + N +E++ + L+
Sbjct: 96 KKIANEHDFFIAQADMMPLVGKTLGPVLGPRGKMPQPVP-ANANLTPLVERLKKTVLINT 154
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKL 246
R + VG M E++AEN+ A +N V+ + +V+S + KL
Sbjct: 155 RDKPLFHVLVGNEKMSDEELAENIEAILNTVSRKYEKGLYHVKSAYTKL 203
>sp|A0B922|RL1_METTP 50S ribosomal protein L1P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl1p PE=3 SV=1
Length = 212
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RKL D YD F+A+ + +P++ K LG K+ K+P P+ + + + I ++ +
Sbjct: 96 RKLADEYDFFIAETQFMPVIGKTLGPILGKRGKMPTPLP-PNADVAQMISRLKNIVRIRS 154
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
R + VG+ M A +AEN+ + I + + + N++S ++K
Sbjct: 155 RDRPTFHIAVGRRDMDARQLAENIESVITKLEQTLKDGRRNLKSVYVK 202
>sp|P38779|CIC1_YEAST Proteasome-interacting protein CIC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CIC1 PE=1 SV=1
Length = 376
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 90 ICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLA 149
+ LI+ D +++D + ++ ++ + + ++I LKT Y+ +EA+ + + LA
Sbjct: 123 VLLILKDSDIKKVSEDDLFDQLDSEGIKVDEIICGKDLKTVYKAYEARNAFISQFSLILA 182
Query: 150 DKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKE--------QIEKVCGSAL-LYLRTG 200
D +V LPKL+G + K + P+ ++ KE I+KV + L + L G
Sbjct: 183 DDSIVTSLPKLMGGKAYNKVE-TTPISIRTHANKEFSLTTLTNNIKKVYMNQLPVKLPRG 241
Query: 201 TCSVLKVGKVS-MGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVY 255
T + +G + + E+ +NV ++E + + + +RS +K S LP+Y
Sbjct: 242 TTLNVHLGNLEWLRPEEFVDNV----ELISEQLIKAY-QIRSIFIKTNRSPVLPLY 292
>sp|Q6FRF5|RL10A_CANGA 60S ribosomal protein L10a OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL10A
PE=3 SV=1
Length = 217
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYGKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVY 255
+ VG V M + + ++ ++N + ++ + W NV S +K A +Y
Sbjct: 166 AVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217
>sp|A3CSJ6|RL1_METMJ 50S ribosomal protein L1P OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rpl1p PE=3 SV=1
Length = 213
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 133 PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGS 192
P EA RK+ Y FLA+ ++PL+ + LG + ++P+PV + + + ++++ S
Sbjct: 93 PREA-RKVAGEYRFFLAETAMMPLVGRYLGVRLGPRGRMPMPVP-QGMDIRPIVQRLRSS 150
Query: 193 ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ + KVG M E IAEN+ A ++ V ++ N+ S ++K
Sbjct: 151 VKIRTKDKKVFHTKVGTSGMEPEQIAENIDAVLHRVESVLESGTMNIHSVYVK 203
>sp|P36144|RL1D1_YEAST Ribosome biogenesis protein UTP30 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UTP30 PE=1 SV=1
Length = 274
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 39/257 (15%)
Query: 25 ERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKI-PLPHSLLGND 83
E+A+KAL+ + N L+ D +++I+ K ++R N +I PL L
Sbjct: 14 EKALKALILQCEENPS------LKNDKDIHIIINTGKKMGINRDNIPRIIPLTKYKLFK- 66
Query: 84 SDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKR--KLC 141
P ++ +++ + S L ++ + K L ++I + L+ R F+ + +L
Sbjct: 67 ---PRDLNILLITKDPSALYRETLTKDEHTSEL-FKEIISVKNLR---RRFKGSKLTQLY 119
Query: 142 DSYDIFLADKRVVPLLPKLLGKHFFK-KKKIPV------PVDLKHQNWKE---------Q 185
+D+ +AD RV LLP++LG F+ KK+P V LK Q E Q
Sbjct: 120 KDFDLVVADYRVHHLLPEVLGSRFYHGSKKLPYMIRMSKEVKLKRQQMVEKCDPIYVRAQ 179
Query: 186 IEKVCGSALLYLRTGTCSVLKVGKVS-MGAEDIAENVIAAINGVAEIVPRKWGNV----- 239
+ +C + C ++VG + +I +N+ IN + + R G V
Sbjct: 180 LRSICKNTSYIPNNDNCLSVRVGYIQKHSIPEILQNIQDTINFLTDKSKRPQGGVIKGGI 239
Query: 240 RSFHLKLLESLALPVYQ 256
S +K S +LP+YQ
Sbjct: 240 ISIFVKTSNSTSLPIYQ 256
>sp|Q9UVJ4|RL10A_CANAL 60S ribosomal protein L10a OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RPL10A PE=3 SV=2
Length = 217
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQIPRLLGPTLSKAGKFPTPVS-HNDDLYSKVTDVKSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M + + ++ A N + ++ + W NV S +K
Sbjct: 166 AVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIK 207
>sp|Q9Y8J2|RL1_METVO 50S ribosomal protein L1P OS=Methanococcus voltae GN=rpl1p PE=3
SV=1
Length = 213
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
+KL ++ F+A ++P++ K LG + K+P PV + N K +E+ + +
Sbjct: 96 KKLANANQFFIAQADMMPIVGKSLGAVLGPRGKMPQPVP-ANANLKPLVERFGKTISINT 154
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPV 254
R + VGK SM E++A N+ A +N VA + +V++ KL + P+
Sbjct: 155 RDKAFFQVYVGKESMSDEELAANIEAVLNTVARKYEKGLYHVKNAFTKLTMGASAPI 211
>sp|P0CX44|RL1B_YEAST 60S ribosomal protein L1-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL1B PE=1 SV=1
Length = 217
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYGKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M + + ++ ++N ++ + W NV S +K
Sbjct: 166 AVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVK 207
>sp|P0CX43|RL1A_YEAST 60S ribosomal protein L1-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL1A PE=1 SV=1
Length = 217
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 144 YDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCS 203
Y+ F+A + ++ +P+LLG K K P PV + + ++ V + L+ C
Sbjct: 107 YNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVS-HNDDLYGKVTDVRSTIKFQLKKVLCL 165
Query: 204 VLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ VG V M + + ++ ++N ++ + W NV S +K
Sbjct: 166 AVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVK 207
>sp|P54050|RL1_METJA 50S ribosomal protein L1P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl1p PE=1 SV=2
Length = 219
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
RK+ ++D F+A ++PL+ + +G + K+P PV + N K +E++ + ++
Sbjct: 96 RKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVP-ANANIKPLVERLKKTVVINT 154
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKL 246
R + VG M E I +N+ A +N VA+ + +++ ++KL
Sbjct: 155 RDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKL 203
>sp|A6UTF9|RL1_META3 50S ribosomal protein L1P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl1p PE=3 SV=1
Length = 213
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 145 DIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSV 204
D F+A ++PL+ K LG + K+P PV + N K +E+ + + R
Sbjct: 103 DFFIAQADMMPLVGKTLGPVLGPRGKMPQPVP-ANANLKPLVERFKKTVSINTRDKPSFK 161
Query: 205 LKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPV 254
+ G + E++AEN+ A ++ VA + +V++ + KL ++P+
Sbjct: 162 VLAGTEKLNDEELAENIDAILSTVARQYEKGLYHVKNAYTKLTMGPSVPI 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,293,386
Number of Sequences: 539616
Number of extensions: 8124103
Number of successful extensions: 54340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 1739
Number of HSP's that attempted gapping in prelim test: 36934
Number of HSP's gapped (non-prelim): 10297
length of query: 431
length of database: 191,569,459
effective HSP length: 120
effective length of query: 311
effective length of database: 126,815,539
effective search space: 39439632629
effective search space used: 39439632629
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)