Query 014066
Match_columns 431
No_of_seqs 156 out of 1152
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 04:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i2a_A 50S ribosomal protein L 100.0 1.4E-45 4.9E-50 351.2 18.6 212 19-258 1-215 (219)
2 3j21_A 50S ribosomal protein L 100.0 2.2E-46 7.5E-51 356.2 7.8 211 19-255 3-215 (216)
3 2zkr_5 60S ribosomal protein L 100.0 4.2E-45 1.4E-49 346.5 14.5 208 19-254 1-211 (212)
4 1mzp_A 50S ribosomal protein L 100.0 1.7E-44 5.9E-49 343.3 17.9 211 18-254 2-215 (217)
5 3o58_A L10A, 60S ribosomal pro 100.0 1.4E-48 4.9E-53 371.3 -10.5 216 16-255 1-217 (217)
6 3iz5_A 60S ribosomal protein L 100.0 1.2E-47 4E-52 364.8 -5.4 215 16-255 1-216 (216)
7 2wwq_5 50S ribosomal protein L 100.0 5E-38 1.7E-42 302.0 20.9 201 23-258 22-228 (234)
8 3qoy_A 50S ribosomal protein L 100.0 1.6E-37 5.5E-42 299.6 18.8 205 23-257 22-231 (242)
9 3bbo_D Ribosomal protein L1; l 100.0 8.4E-38 2.9E-42 313.2 15.5 204 24-262 137-347 (352)
10 3u42_A 50S ribosomal protein L 100.0 5E-33 1.7E-37 266.4 19.3 201 24-257 23-228 (229)
11 2ftc_A Mitochondrial ribosomal 100.0 4.5E-33 1.5E-37 259.8 18.0 181 52-257 2-186 (189)
12 2ov7_A 50S ribosomal protein L 99.8 2E-17 6.7E-22 147.1 15.7 66 191-256 68-135 (137)
No 1
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=100.00 E-value=1.4e-45 Score=351.19 Aligned_cols=212 Identities=23% Similarity=0.293 Sum_probs=186.2
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-C-ccceeeEeCCCCCCCCCCCCCCEEEEEecC
Q 014066 19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-S-RTNAFKIPLPHSLLGNDSDNPPEICLIMDD 96 (431)
Q Consensus 19 v~~e~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKkip~k-~-k~~p~~I~LPHpl~~~~~~~~~kICLIvkD 96 (431)
+++++|.+||++|+++. +...|+| +|+|+|+|++++.+ . +..++.|.|||++++ +.+||||++|
T Consensus 1 ~~~~~l~eAv~~llk~~-------~~~kf~e--tVel~i~LK~~dp~~d~q~vrg~v~LPh~~~k-----~~~V~Vf~~~ 66 (219)
T 1i2a_A 1 MDREALLQAVKEARELA-------KPRNFTQ--SFEFIATLKEIDMRKPENRIKTEVVLPHGRGK-----EAKIAVIGTG 66 (219)
T ss_dssp CCHHHHHHHHHHHHHHS-------CCCSSCC--EEEEEEEESSCCTTSGGGCCEEEEECTTCCSS-----CCCEEEECCH
T ss_pred CCHHHHHHHHHHHHHhc-------ccCCCCc--eEEEEEEecccCCcccccccceEEecCCCCCC-----CcEEEEEcCc
Confidence 35889999999988863 2356876 99999999887544 4 466789999999864 7899999998
Q ss_pred CCCCchhHHHHHHHhhhCCCCcceeeehhhhhhhcch-HHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeee
Q 014066 97 RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRP-FEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPV 175 (431)
Q Consensus 97 ~~~~~~t~~e~kekl~a~~i~i~kVI~lkkLk~kyKs-fE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV 175 (431)
++. ++ +.++|+ .+++.++| .+|+. ++++|+|+.+||+|||++++|+.||++||+.||++|+||+|+
T Consensus 67 ~~~-----~~----A~~aGa---~~vg~~~L-~ki~~~kk~~r~l~~~fD~~lA~~~~m~~l~k~LGk~LgprgkmP~pk 133 (219)
T 1i2a_A 67 DLA-----KQ----AEELGL---TVIRKEEI-EELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPV 133 (219)
T ss_dssp HHH-----HH----HHHTTC---EEECHHHH-HHHHHCHHHHHHHHHHCSEEEEEGGGHHHHHHHTHHHHGGGTCCCEEE
T ss_pred hhH-----HH----HHHCCC---CEEcHHHH-HHHHhhhhhhhhchhhCCEEEECHHHHHHHHHHHhhhhcccCCCCccc
Confidence 731 22 346676 69999999 77764 667899999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHccceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCCcceEEe
Q 014066 176 DLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVY 255 (431)
Q Consensus 176 ~lt~~dLk~~Ieka~~St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~NIksI~LKtt~S~aLPIY 255 (431)
.+ +.||..+|+++++++.|++++++|++++||+++|+++||+|||.+++++|.+.+|.+|+||++|||||||||++|||
T Consensus 134 ~g-t~dv~~~v~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~iy 212 (219)
T 1i2a_A 134 PA-NANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKVK 212 (219)
T ss_dssp CT-TCCCHHHHHHHHTEEEEECTTSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSTTGGGGEEEEEEEETTSCCEECC
T ss_pred CC-CccHHHHHHHHhcceEEEecCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCCccccceEEEEEECCCCCCEEeE
Confidence 99 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 014066 256 QAV 258 (431)
Q Consensus 256 ~s~ 258 (431)
.+.
T Consensus 213 ~~~ 215 (219)
T 1i2a_A 213 KEK 215 (219)
T ss_dssp ---
T ss_pred hhh
Confidence 875
No 2
>3j21_A 50S ribosomal protein L1P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.2e-46 Score=356.16 Aligned_cols=211 Identities=25% Similarity=0.323 Sum_probs=189.1
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccC-CCC-CccceeeEeCCCCCCCCCCCCCCEEEEEecC
Q 014066 19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI-PQV-SRTNAFKIPLPHSLLGNDSDNPPEICLIMDD 96 (431)
Q Consensus 19 v~~e~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKki-p~k-~k~~p~~I~LPHpl~~~~~~~~~kICLIvkD 96 (431)
++++++.+||+.+++ ..+.+.|+| +|+|+|+|+++ |.+ .+...+.|.|||++++ ..+||||+++
T Consensus 3 ~~~~~~~eav~~~~~-------~~~~~kF~e--tvel~i~L~~~dp~k~d~~~rg~v~LPh~~~k-----~~kV~Vf~~~ 68 (216)
T 3j21_A 3 FDRQKIVKAVKEAKA-------RAKPRNFTQ--SVEVAVNLKDIDLKRPENRFKLEVVLPHGRGK-----DVKIAVIADG 68 (216)
T ss_dssp SSCSSCCCCTTTTCC-------CCCCSSSCC--EEEEEEEESSCCSSSGGGSCCEEEECSSCCSS-----CCCEEECCCS
T ss_pred CCHHHHHHHHHHHHH-------hCcccCCCc--eEEEEEEECCCCCCCcCceeeEEEeCCCCCCC-----CcEEEEECCH
Confidence 567788899988876 234567887 99999999987 555 4667789999999976 6799999986
Q ss_pred CCCCchhHHHHHHHhhhCCCCcceeeehhhhhhhcchHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeeec
Q 014066 97 RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVD 176 (431)
Q Consensus 97 ~~~~~~t~~e~kekl~a~~i~i~kVI~lkkLk~kyKsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV~ 176 (431)
+.. + .+.++|+. +++.++|++.|+.|+++|+|+.+||+||||+++|+.||++||+.||+||+||+|+.
T Consensus 69 ~~~-----~----~Ak~aGad---~vg~e~L~k~~k~~k~~kkl~~~fD~~lA~~~im~~l~k~LGk~LgprgkmP~pk~ 136 (216)
T 3j21_A 69 AVA-----E----AARKLGLD---VISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVP 136 (216)
T ss_dssp HHH-----H----HHHHHTCC---CCCTTHHHHHHHCCCSSSCCSSSCSEEEBCGGGHHHHHHHHHHHHTTSSSSCCTTT
T ss_pred HHH-----H----HHHhcCCC---ccCHHHHHHHhcCHHHHhhhhhhCCEEEeCHHHHHHHHHHHHHHhccCCccCCCcC
Confidence 531 2 24566774 89999999888888889999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHccceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCCcceEEe
Q 014066 177 LKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVY 255 (431)
Q Consensus 177 lt~~dLk~~Ieka~~St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~NIksI~LKtt~S~aLPIY 255 (431)
++..|+..+|+++++++.|++++++|++++||+++|+++||+|||.+++++|.+.+|.+|+||++|||||||||++|||
T Consensus 137 gtv~dv~~~v~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~k~Iksi~lksTmgp~i~i~ 215 (216)
T 3j21_A 137 PTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPAVKIE 215 (216)
T ss_dssp TCBCSHHHHHHHHTCEEEEEEETTTEEECCCEESSSCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEESSSCCEECC
T ss_pred CcHHHHHHHHHHHHhhceeecCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccccccceEEEEEECCCCCCEEcc
Confidence 8757999999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.2e-45 Score=346.46 Aligned_cols=208 Identities=20% Similarity=0.233 Sum_probs=185.0
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccC-CCC-CccceeeEeCCCCCCCCCCCCCCEEEEEecC
Q 014066 19 VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI-PQV-SRTNAFKIPLPHSLLGNDSDNPPEICLIMDD 96 (431)
Q Consensus 19 v~~e~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKki-p~k-~k~~p~~I~LPHpl~~~~~~~~~kICLIvkD 96 (431)
++++++.+||++|+++. +...|+| +|+|+|+||++ |.+ .+..++.|.|||++++ +.+||||++|
T Consensus 1 ~~~~~l~eAv~~llk~~-------~~~kf~e--tvel~i~Lk~~dp~k~d~~~rg~v~LPh~~~k-----~~~V~Vf~~~ 66 (212)
T 2zkr_5 1 MADQEIENAVSRALEDA-------PERNFRE--TVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQ-----ETTIVVFAEG 66 (212)
T ss_dssp -CCTTHHHHHHHHHHTS-------CCCSSCC--EEEEEEEESSCCTTTTTTCCCCEEECSSCCSS-----CCCEEEECCH
T ss_pred CCHHHHHHHHHHHHHhc-------ccCCCCc--eEEEEEEeCCCCCCcccccCceEEECCCCCCC-----CcEEEEEcCc
Confidence 46788999999988853 3456876 99999999888 443 4566789999999864 7899999998
Q ss_pred CCCCchhHHHHHHHhhhCCCCcceeeehhhhhhhcc-hHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeee
Q 014066 97 RPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYR-PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPV 175 (431)
Q Consensus 97 ~~~~~~t~~e~kekl~a~~i~i~kVI~lkkLk~kyK-sfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV 175 (431)
++. ++ +.++|+ .+++.++| .+++ .|+++|+++.+||+|||++++|+.||++||+.||++|+||+|+
T Consensus 67 ~~~-----~~----A~~aGa---~~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LGk~LgprgkmP~pk 133 (212)
T 2zkr_5 67 ETA-----LR----AEEVAD---DVLDEDEL-EELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPL 133 (212)
T ss_dssp HHH-----HH----HHHHTS---CCCCHHHH-HHHTTCHHHHHHHHHHCSEEEECTTTHHHHHHHTHHHHHHHTCCEEEC
T ss_pred hhH-----HH----HHhcCC---CEeCHHHH-HHHHhhHHhhhcccccCCEEEECHHHHHHHHHHHhhhccccCCcCccc
Confidence 731 22 345676 58999999 7776 6999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHccceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCCcceEE
Q 014066 176 DLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPV 254 (431)
Q Consensus 176 ~lt~~dLk~~Ieka~~St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~NIksI~LKtt~S~aLPI 254 (431)
.+ +.||...|+++++++.|++++++|++++||+++|+++||+|||.+++++|.+.+|.+|+||++|||||||||+++|
T Consensus 134 ~g-t~dv~~~i~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~~~~~ik~v~lksTmgp~i~i 211 (212)
T 2zkr_5 134 DP-DDDVVEVIERMKNTVQLRSGERRTFHTRVGAEDMSAENIADNIDVILRRLHADLEKGPLNIDTVYVKTTMGPAMEV 211 (212)
T ss_dssp CS-SSCCHHHHHHHHTEEECCCSSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCCCTTTEEEEEEEESSSCCEEC
T ss_pred CC-CcCHHHHHHHHHcceEEEecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccccEEEEEEECCCCCCEEC
Confidence 99 5899999999999999999999999999999999999999999999999999999999999999999999999987
No 4
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=100.00 E-value=1.7e-44 Score=343.31 Aligned_cols=211 Identities=22% Similarity=0.252 Sum_probs=186.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-C-ccceeeEeCCCCCCCCCCCCCCEEEEEec
Q 014066 18 RVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-S-RTNAFKIPLPHSLLGNDSDNPPEICLIMD 95 (431)
Q Consensus 18 ~v~~e~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKkip~k-~-k~~p~~I~LPHpl~~~~~~~~~kICLIvk 95 (431)
.|+++++++||++|++| + ..+...|+| +|+|+|+|++++.+ . +..++.|.|||++++ +.+||||++
T Consensus 2 ~v~~~~l~~Av~~ll~~-~----~~~~~kf~e--tvel~i~LK~~dp~~d~q~~rg~v~LPh~~~k-----~~~V~Vf~~ 69 (217)
T 1mzp_A 2 LADKESLIEALKLALST-E----YNVKRNFTQ--SVEIILTFKGIDMKKGDLKLREIVPLPKQPSK-----AKRVLVVPS 69 (217)
T ss_dssp CCCHHHHHHHHHHHHST-T----TCCCCSSCC--EEEEEEEESSCCGGGTTTCCEEEEECSSCCSS-----CCCEEEECC
T ss_pred ccCHHHHHHHHHHHHhh-c----cccccCCCc--cEEEEEEecCCCCcccccccceeecCCCCCCC-----CcEEEEEcC
Confidence 37899999999999987 2 134577876 99999999888554 4 467789999999864 789999999
Q ss_pred CCCCCchhHHHHHHHhhhCCCCcceeeehhhhhhhcc-hHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCee
Q 014066 96 DRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYR-PFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP 174 (431)
Q Consensus 96 D~~~~~~t~~e~kekl~a~~i~i~kVI~lkkLk~kyK-sfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~Pip 174 (431)
|++. ++ +.++|+ ..+++.++| .+++ .|+++|+|+.+||+|||++++|+.||++||+.||++|+||+|
T Consensus 70 ~~~~-----~~----A~~aGa--d~~vg~~~L-~ki~~~kk~~k~~~~~fD~~lA~~~~m~~l~~~LG~~LgprgkmP~p 137 (217)
T 1mzp_A 70 SEQL-----EY----AKKASP--KVVITREEL-QKLQGQKRPVKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTP 137 (217)
T ss_dssp HHHH-----HH----HHHTCC--SEECCHHHH-HHHTTCHHHHHHHHHSCSEEEECGGGHHHHHHHTHHHHGGGTCCEEE
T ss_pred chhH-----HH----HHhcCC--CeeeCHHHH-HHHHhhHHhhhhchhhCCEEEECHHHHHHHHHHHhhhccccCCCCcc
Confidence 8731 22 345676 248999999 6665 478889999999999999999999999999999999999999
Q ss_pred ecCCcccHHHHHHHHHccceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCCcceEE
Q 014066 175 VDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPV 254 (431)
Q Consensus 175 V~lt~~dLk~~Ieka~~St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~NIksI~LKtt~S~aLPI 254 (431)
+.+ +.||...|+++++++.|++++++|++++||+++|+++||+|||.+++++|.+.+|. |+||++|||||||||+++|
T Consensus 138 ~~g-t~dv~~~v~~~k~~v~~r~~k~~~i~v~VG~~~~~~e~L~eNi~a~i~~l~~~~p~-~~~ik~v~lksTmgp~i~i 215 (217)
T 1mzp_A 138 LPN-TADISEYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAKV-ETNLRNIYVKTTMGKAVKV 215 (217)
T ss_dssp CCS-SSCCHHHHHHHHTEEEEECSSSSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCC-TTTEEEEEEEETTSCCEEC
T ss_pred cCC-CccHHHHHHHHhcceEEEecCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcc-chheEEEEEECCCCCCeeC
Confidence 999 58999999999999999999999999999999999999999999999999999999 9999999999999999986
No 5
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins, ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A 1s1i_A 3izs_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B 3jyw_A
Probab=100.00 E-value=1.4e-48 Score=371.30 Aligned_cols=216 Identities=24% Similarity=0.383 Sum_probs=192.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccC-CCCCccceeeEeCCCCCCCCCCCCCCEEEEEe
Q 014066 16 GSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI-PQVSRTNAFKIPLPHSLLGNDSDNPPEICLIM 94 (431)
Q Consensus 16 ~s~v~~e~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKki-p~k~k~~p~~I~LPHpl~~~~~~~~~kICLIv 94 (431)
||.+++++|++||++|+++.+ +.+.+.|+| +|+|+|+||++ |.+.+..++.|.|||++++ +.+||||+
T Consensus 1 ~sk~~~~~~~~av~~~l~~~~----~~~~~kf~e--tVel~i~Lk~idp~kd~~~rg~v~LPh~~~k-----~~~V~Vf~ 69 (217)
T 3o58_A 1 MSKITSSQVREHVKELLKYSN----ETKKRNFLE--TVELQVGLKNYDPQRDKRFSGSLKLPNCPRP-----NMSICIFG 69 (217)
T ss_dssp ---CCSTTHHHHTTSSSSCCS----SSSCCSSCC--CCCCCCCSCCSCSSSSSCCSCCCSCCCCCSS-----CCCCCCCS
T ss_pred CCccCHHHHHHHHHHHHHhcc----cccccCCCc--cEEEEEEecccCCCCCCcCCeEEECCCCCCC-----CcEEEEEc
Confidence 578999999999999998542 135567876 99999999988 5556677789999999875 68999999
Q ss_pred cCCCCCchhHHHHHHHhhhCCCCcceeeehhhhhhhcchHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCee
Q 014066 95 DDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP 174 (431)
Q Consensus 95 kD~~~~~~t~~e~kekl~a~~i~i~kVI~lkkLk~kyKsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~Pip 174 (431)
+|+... .++++|++ +++.++|+..|+.|+.+|+|+.+||+||||+++|+.||++||+.|++++|||+|
T Consensus 70 ~~~~~~---------~Ak~aGa~---~vg~~~L~~~~k~~k~~~~l~~~fD~~iA~~~im~~l~riLG~~l~p~gk~P~p 137 (217)
T 3o58_A 70 DAFDVD---------RAKSCGVD---AMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTP 137 (217)
T ss_dssp STTSSG---------GGTTTTCC---CCCSTTTTTTSCSSSHHHHHHCSSSCCCCCCCCSSCCSSSSSSTTHHHHCSSCC
T ss_pred CcHhHH---------HHHHcCCC---EeCHHHHHHHhhchhHhhhhhhhCCEEEECHHHHHHHHHHhhhhhcccCCcCCC
Confidence 997542 23456664 899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHHHHHHHccceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCCcceEE
Q 014066 175 VDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPV 254 (431)
Q Consensus 175 V~lt~~dLk~~Ieka~~St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~NIksI~LKtt~S~aLPI 254 (431)
++++ .|+.++|+++++++.|++++++|++++||+++|+++||+|||.+++++|.+.+|++|+||++|||||||||++||
T Consensus 138 ~~vt-~dv~~~v~~~k~~v~~r~~k~~~i~v~IG~~~~~~e~l~eNi~avi~~l~~~~pk~~~~iksi~lksTmgp~i~i 216 (217)
T 3o58_A 138 VSHN-DDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRL 216 (217)
T ss_dssp SCTT-TCSSSGGGGTTSCCSCCCCSSSCCCCCCCSSSCCSHHHHHHHHHTCSTTTCCSSSCSCCCSCCCCCSSSSCSCCC
T ss_pred cCCc-hhHHHHHHHHhceEEEEeCCCCEEEEeeccCCCCHHHHHHHHHHHHHHHHHhcccCCceEEEEEEECCCCCCEec
Confidence 9975 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 014066 255 Y 255 (431)
Q Consensus 255 Y 255 (431)
|
T Consensus 217 y 217 (217)
T 3o58_A 217 Y 217 (217)
T ss_dssp -
T ss_pred C
Confidence 9
No 6
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_A
Probab=100.00 E-value=1.2e-47 Score=364.81 Aligned_cols=215 Identities=22% Similarity=0.379 Sum_probs=193.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccC-CCCCccceeeEeCCCCCCCCCCCCCCEEEEEe
Q 014066 16 GSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI-PQVSRTNAFKIPLPHSLLGNDSDNPPEICLIM 94 (431)
Q Consensus 16 ~s~v~~e~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKki-p~k~k~~p~~I~LPHpl~~~~~~~~~kICLIv 94 (431)
||.++.+++.+||+.++++. .++.+.|.| +|||+|+|+++ |.+.+..++.|.|||++++ +.+||||+
T Consensus 1 ~~k~~~~~l~eav~~~~~~~-----~~~~~kF~e--tvel~i~Lk~idp~kd~~~rg~v~LPh~~~k-----~~kV~Vf~ 68 (216)
T 3iz5_A 1 MSKLQSDAVKDAITQIVGEA-----REKKRKFTE--TVELQIGLKNYDPQKDKRFSGSVKLPHIPRP-----KMRVCMLG 68 (216)
T ss_dssp CTGGGSCSSCEECTTTSSSS-----TTHHHHCCC--SSCCEEEEEEECCCCSSSTTCCEECCBCSSC-----CCCCCCEE
T ss_pred CCccCHHHHHHHHHHHHHhc-----cccccCCCc--cEEEEEEecccCcccccccceeecCCCCCCC-----CcEEEEEc
Confidence 57899999999999998732 123567877 99999999877 5556777789999999876 68999999
Q ss_pred cCCCCCchhHHHHHHHhhhCCCCcceeeehhhhhhhcchHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCee
Q 014066 95 DDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP 174 (431)
Q Consensus 95 kD~~~~~~t~~e~kekl~a~~i~i~kVI~lkkLk~kyKsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~Pip 174 (431)
+++.. ++ +.++|++ +++.++|++.|+.++.+|+|+.+||+||||++||+.||++||+.|++++|||+|
T Consensus 69 ~~~~~-----~~----A~~aGa~---~vg~~~L~~~~k~~~~~rkl~~~fD~~lA~~~i~~~l~riLG~~l~p~gk~P~p 136 (216)
T 3iz5_A 69 DAQHV-----DQ----AEKMGLD---YMDVESLKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTL 136 (216)
T ss_dssp EECCT-----HH----HHHHHHT---CSEEECGGGHHHHHHTCCCCSEEEECTTTHHHHHHHHHHHHTTTCSCCTTTTCB
T ss_pred ChHhH-----HH----HHhccCC---EeCHHHHHHHhhchHHHHHHHhhCCEEEECHHHHHHHHHHhcccccccCCcCCC
Confidence 87653 23 3355663 899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccHHHHHHHHHccceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCCCccEEEEEcCCCcceEE
Q 014066 175 VDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPV 254 (431)
Q Consensus 175 V~lt~~dLk~~Ieka~~St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~NIksI~LKtt~S~aLPI 254 (431)
++++ .|+.+.|+++++++.|++++++|++++||+++|+++||+|||.+++++|.+.+|++|+||++|||||||||++||
T Consensus 137 ~~~t-~dv~~~v~~~k~~v~~r~~k~~~i~v~IG~~~~~~e~L~eNi~avi~~l~~~~p~~~~~Iksv~iksTmgp~i~i 215 (216)
T 3iz5_A 137 VSHQ-ESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYVKSTMGKRVRV 215 (216)
T ss_dssp CSCH-HHHHHHHHHTBCCEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCCSSCCSCSCSEEEECCSSCCCEEE
T ss_pred cCCc-ccHHHHHHHHHhhhheeCCCccEEEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEECCCCCCEec
Confidence 9974 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e
Q 014066 255 Y 255 (431)
Q Consensus 255 Y 255 (431)
|
T Consensus 216 y 216 (216)
T 3iz5_A 216 F 216 (216)
T ss_dssp C
T ss_pred C
Confidence 9
No 7
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=100.00 E-value=5e-38 Score=301.95 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccC-CCC-CccceeeEeCCCCCCCCCCCCCCEEEEEecCCCCC
Q 014066 23 TVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI-PQV-SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKS 100 (431)
Q Consensus 23 ~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKki-p~k-~k~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~ 100 (431)
.+.+||..|.+ .+...|+| +|+|+|+| ++ |.+ .+..++.|.|||++++ +.+||||++|++.
T Consensus 22 ~~~eAv~~lk~--------~~~~kF~e--tvel~i~L-~vdp~k~dq~vrg~V~LPh~~~k-----~~rV~Vfa~~~~~- 84 (234)
T 2wwq_5 22 DINEAIALLKE--------LATAKFVE--SVDVAVNL-GIDARKSDQNVRGATVLPHGTGR-----SVRVAVFTQGANA- 84 (234)
T ss_dssp CHHHHHHHHHH--------TCCCSSCC--EEEEEEEE-CSCCCSSTTSCCEEEECSSCCSS-----CCCEEEECSSSCH-
T ss_pred CHHHHHHHHHH--------hccCCCCc--eEEEEEEE-CCCCcccCcccceEEeCCCCCCC-----CcEEEEEcCchhH-
Confidence 46788887643 12356876 99999999 55 554 4667789999999865 6899999999852
Q ss_pred chhHHHHHHHhhhCCCCcceeeehhhhhhhcchHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeeecCC-c
Q 014066 101 NLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-H 179 (431)
Q Consensus 101 ~~t~~e~kekl~a~~i~i~kVI~lkkLk~kyKsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV~lt-~ 179 (431)
++ +.++|+ .++|.++|..+++.. +.+||+|||++++|+.|++ ||+.|++||+||+|+.+| +
T Consensus 85 ----~~----Ak~aGa---d~vg~edLi~kik~~------~~~fD~~iAtp~~m~~l~~-LGkiLgprGlmP~pk~gTvt 146 (234)
T 2wwq_5 85 ----EA----AKAAGA---ELVGMEDLADQIKKG------EMNFDVVIASPDAMRVVGQ-LGQVLGPRGLMPNPKVGTVT 146 (234)
T ss_dssp ----HH----HHHHTC---SEECSHHHHHHHHHT------CCCSSEEEECHHHHHHTTS-SCSCCCSSCCSCCTTTTCBC
T ss_pred ----HH----HHHcCC---CEEcHHHHHHHHHcC------cccCCEEEECHHHHHHHHH-HhhhhccCCCCCCccCCCcc
Confidence 33 335576 489999998887542 4799999999999999999 999999999999999997 7
Q ss_pred ccHHHHHHHHHcc-ceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCC--CCccEEEEEcCCCcceEEec
Q 014066 180 QNWKEQIEKVCGS-ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKW--GNVRSFHLKLLESLALPVYQ 256 (431)
Q Consensus 180 ~dLk~~Ieka~~S-t~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~--~NIksI~LKtt~S~aLPIY~ 256 (431)
.||...|++++++ +.|++.+++|++++||+++|+++||+|||.+++++|.+.+|.+| +||++|||+|||||++||-.
T Consensus 147 ~dv~~~V~~~k~g~v~~r~~k~~~i~v~VG~~~f~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lksTmgp~i~id~ 226 (234)
T 2wwq_5 147 PNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQ 226 (234)
T ss_dssp SCSHHHHHHHHHHEEEECCSSSCEEEEEEEETTSCHHHHHHHHHHHHHHHHHSCCSSCCSCCEEEEEEEESSSCEEEESS
T ss_pred ccHHHHHHHHHcCeeEEEecCCcEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCcccccCCeEEEEEEECCCCCCEEEeh
Confidence 8999999999987 69999999999999999999999999999999999999999999 59999999999999999876
Q ss_pred cC
Q 014066 257 AV 258 (431)
Q Consensus 257 s~ 258 (431)
+.
T Consensus 227 ~~ 228 (234)
T 2wwq_5 227 AG 228 (234)
T ss_dssp SC
T ss_pred HH
Confidence 54
No 8
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent of ribosome, rRNA BI regulation of translation, translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Probab=100.00 E-value=1.6e-37 Score=299.57 Aligned_cols=205 Identities=19% Similarity=0.249 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-CccceeeEeCCCCCCCCCCCCCCEEEEEecCCCCCc
Q 014066 23 TVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSN 101 (431)
Q Consensus 23 ~V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKkip~k-~k~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~ 101 (431)
.+.+||..++++... +.+.|.| +|+|+|+|...|.+ .+.+.+.|.|||++++ ..+||||+++++.
T Consensus 22 ~l~eAi~~~k~~~~~-----~~rkF~e--tVel~i~L~vDp~k~d~~vrg~V~LPh~~gk-----~~kV~Vfa~~~~~-- 87 (242)
T 3qoy_A 22 TLEEAVDLLKKMEEV-----LQRRFDE--TVELAMRLNVDPRYADQMVRGSVVLPHGLGK-----PIKVVVFAEGEYA-- 87 (242)
T ss_dssp CHHHHHHHHHHHHHH-----HCCSSCC--EEEEEEEESCCTTSGGGCCEEEEECSCCCSS-----CCCEEEECCHHHH--
T ss_pred CHHHHHHHHHhhccc-----ccCCCCC--cEEEEEEeccCCCCCCCccceEecCCCCCCC-----CcEEEEEcCHHHH--
Confidence 478899998875432 3477887 99999999633555 4567789999999976 6899999997531
Q ss_pred hhHHHHHHHhhhCCCCcceeeehhhhhhhcchHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeeecCC-cc
Q 014066 102 LTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQ 180 (431)
Q Consensus 102 ~t~~e~kekl~a~~i~i~kVI~lkkLk~kyKsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV~lt-~~ 180 (431)
++ ++++|++ +++.++|..++. ++.+.+||+|||++++|+.|++ ||+.|++||+||+|+.+| +.
T Consensus 88 ---~e----Ak~aGad---~vg~~dLi~ki~-----k~g~~~fD~~iAtpd~m~~l~~-LGriLGPrGlmP~pk~gTvt~ 151 (242)
T 3qoy_A 88 ---KK----AEEAGAD---YVGGDELINKIL-----KEEWTDFDVAIATPEMMPKVAK-LGRILGPRGLMPSPKTGTVTT 151 (242)
T ss_dssp ---HH----HHHTTCS---EEESHHHHHHHH-----HHTCCCCSEEEECTTTHHHHGG-GHHHHGGGTCSCCGGGTCBCS
T ss_pred ---HH----HHHcCCC---EECcHHHHHHHH-----hCCCccCCEEEECHHHHHHHHH-HhHHhccccCCCcccCCccch
Confidence 22 4567774 889999987651 2467899999999999999999 999999999999999997 68
Q ss_pred cHHHHHHHHHc-cceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCC--CCCccEEEEEcCCCcceEEecc
Q 014066 181 NWKEQIEKVCG-SALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRK--WGNVRSFHLKLLESLALPVYQA 257 (431)
Q Consensus 181 dLk~~Ieka~~-St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg--~~NIksI~LKtt~S~aLPIY~s 257 (431)
|+...|+++++ ++.|++.+++|++++||+++|+++||+|||.+++++|.+.+|.+ |+||++|||+|||||+++|+.+
T Consensus 152 dv~~~V~~~k~G~v~fr~~k~~~i~v~VG~~~m~~e~L~eNi~a~i~~l~~~~p~~~kg~~Ik~v~lkSTmGp~i~i~~~ 231 (242)
T 3qoy_A 152 NVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDIN 231 (242)
T ss_dssp CHHHHHHHHHTTEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEEETTSCCEEBCHH
T ss_pred hHHHHHHHHhcCcEEEEecCCcEEEEEecCCCCCHHHHHHHHHHHHHHHHHhCCcccCCceEEEEEEECCCCCCEEEEhh
Confidence 99999999998 68999999999999999999999999999999999999999984 9999999999999999999865
No 9
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=8.4e-38 Score=313.16 Aligned_cols=204 Identities=15% Similarity=0.171 Sum_probs=174.4
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC--CccceeeEeCCCCCCCCCCCCCCEEEEEecCCCCCc
Q 014066 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV--SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSN 101 (431)
Q Consensus 24 V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKkip~k--~k~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~ 101 (431)
+.+||+.|.+ .+...|+| +|+|+|+| +++.+ .+...+.|.|||++++ ..+||||++|++.
T Consensus 137 l~EAi~llK~--------~~~~KFdE--TVEl~I~L-~vDpkk~dq~vRGtV~LPhgtgk-----~~kVcVfa~ge~~-- 198 (352)
T 3bbo_D 137 LKTALSLMKQ--------MSSTKFVE--TAEAHFRL-NIDPKYNDQQLRATVSLPKGTGK-----TVKIAVLAQGDKI-- 198 (352)
T ss_dssp TTTTHHHHST--------TCCSSSCC--EECCEEEE-CSCTTSSTTCCEEEECCTTTSSS-----SSCEEEECCTTTT--
T ss_pred HHHHHHHHHh--------ccccCCCc--eEEEEEEe-CCCCcccccccceeecCCCCCCC-----ccEEEEEeCchhH--
Confidence 5677776654 24567887 99999999 66444 4667789999999864 7899999999853
Q ss_pred hhHHHHHHHhhhCCCCcceeeehhhhhhhcchHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeeecCC-cc
Q 014066 102 LTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQ 180 (431)
Q Consensus 102 ~t~~e~kekl~a~~i~i~kVI~lkkLk~kyKsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV~lt-~~ 180 (431)
++ +.++|+ .++|.++|...++ +++.+||+|||++++|+.|++ ||+.|++||+||+|+.+| ..
T Consensus 199 ---ee----Ak~AGA---dvVG~edLikkIK------kg~~dFD~fIAtpdmM~~lgr-LGkiLGPRGlMPnPk~GTVt~ 261 (352)
T 3bbo_D 199 ---DE----AKAAGA---DIVGGEELIEQIK------GGFMDFDKLIATSDMMAKVAS-LGRILGPRGLMPTPKAGTVTP 261 (352)
T ss_dssp ---HH----HHTTTC---SEEECTTTHHHHT------TTCCCCSEEEECSSSHHHHGG-GGGTTTTTTCSCCTTTTCBSS
T ss_pred ---HH----HHHcCC---CccCHHHHHHHHH------hchhhcCEEEECHHHHHHHHh-hcccccccCCCCCCcCCcccc
Confidence 23 345676 5999999998864 789999999999999999999 999999999999999997 68
Q ss_pred cHHHHHHHHHcc-ceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCC--CccEEEEEcCCCcceEEecc
Q 014066 181 NWKEQIEKVCGS-ALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWG--NVRSFHLKLLESLALPVYQA 257 (431)
Q Consensus 181 dLk~~Ieka~~S-t~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~--NIksI~LKtt~S~aLPIY~s 257 (431)
||...|++++++ +.|++++++|++++||+++|+++||+|||.+++++|...+|.+|. ||++|||+|||||++|||.+
T Consensus 262 Dva~aV~e~K~G~v~fR~dK~g~ihv~VGk~sfs~EqL~ENI~Avi~~L~k~kP~~~KG~yIksv~LkSTMGPgi~I~~~ 341 (352)
T 3bbo_D 262 NVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNKPTGAKGVYWKSAHISSSMGPSIRLNIR 341 (352)
T ss_dssp CHHHHHTTTTTCCEEEECCSSCEECCCCEETTSCHHHHHHHHHHHHHHHHTTCCTTCCSCSEEEEECCBSSSCCCEECTT
T ss_pred cHHHHHHHHHcCeeEEEeCCCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEEEhh
Confidence 999999999987 699999999999999999999999999999999999999999995 99999999999999999974
Q ss_pred -CCCCc
Q 014066 258 -VPDLK 262 (431)
Q Consensus 258 -~~~~~ 262 (431)
++|..
T Consensus 342 ~l~d~~ 347 (352)
T 3bbo_D 342 EMLDYK 347 (352)
T ss_dssp C-----
T ss_pred hccccc
Confidence 44443
No 10
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=100.00 E-value=5e-33 Score=266.44 Aligned_cols=201 Identities=15% Similarity=0.140 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCCCCCeEEEEEEeccCCCC-CccceeeEeCCCCCCCCCCCCCCEEEEEecCCCCCch
Q 014066 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQV-SRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNL 102 (431)
Q Consensus 24 V~kAVkaLlk~~~~~~~~~K~~Lfeed~~V~L~VtLKkip~k-~k~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~~ 102 (431)
+.+||..|.++ ....|+| +|+|+|+|...|.+ .+.+.+.|.|||++++ ..+||||++++..
T Consensus 23 ~~eAi~~lk~~--------~~~kF~e--tvel~i~L~vd~~k~dq~vrg~v~LP~g~gk-----~~kV~Vfa~~~~~--- 84 (229)
T 3u42_A 23 IDEAAHLVKEL--------ATAKFDE--TVEVHAKLGIDPRRSDQNVRGTVSLPHGLGK-----QVRVLAIAKGEKI--- 84 (229)
T ss_dssp HHHHHHHHHHH--------CCSSSCC--EEEEEEEESSCTTCGGGCCEEEEECSSSCST-----TSCEEEECCTHHH---
T ss_pred HHHHHHHHHHh--------CCCCCCc--cEEEEEEEccCCCCCCCceeEEEECCCCCCC-----ceEEEEecChHhH---
Confidence 78888777653 1245776 99999999766665 3567789999999976 6899999987532
Q ss_pred hHHHHHHHhhhCCCCcceeeehhhhhhhcchHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeeecCC-ccc
Q 014066 103 TKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQN 181 (431)
Q Consensus 103 t~~e~kekl~a~~i~i~kVI~lkkLk~kyKsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV~lt-~~d 181 (431)
+ .++++|+. +++.++|..+++ ..+.+||+|||++++|+.|++.||+.|++||+||+|..+| ..|
T Consensus 85 --~----eAk~aGAd---~vG~~dLi~kIk------~g~~~fD~~iAtpd~m~~vg~~LG~iLGPrGlMPnpk~GTvt~d 149 (229)
T 3u42_A 85 --K----EAEEAGAD---YVGGEEIIQKIL------DGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFN 149 (229)
T ss_dssp --H----HHHHTTCS---EEECTHHHHHHH------TTCCCCSEEEECGGGHHHHHHHHHHHHHHHTCCCCGGGTCBSSC
T ss_pred --H----HHHhcCCc---eeCcHHHHHHHh------cCCccccEEEEchHHHHHHHHhhccccccccccccCCCCCCCCC
Confidence 2 24567874 889999987654 4567899999999999999988999999999999999988 579
Q ss_pred HHHHHHHHHc-cceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCCCC--ccEEEEEcCCCcceEEecc
Q 014066 182 WKEQIEKVCG-SALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGN--VRSFHLKLLESLALPVYQA 257 (431)
Q Consensus 182 Lk~~Ieka~~-St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~~N--IksI~LKtt~S~aLPIY~s 257 (431)
+.+.|+++.. ++.|+..+..|++++||+++|+++||+|||.+++++|....|.+|++ |++|||+|||||++.|..+
T Consensus 150 v~~~v~~~K~g~v~~r~dk~g~i~~~IGk~~f~~e~L~eNi~a~i~~i~~~kp~~~kg~~ik~v~lssTmGp~i~id~~ 228 (229)
T 3u42_A 150 IGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPH 228 (229)
T ss_dssp HHHHHHHHHTTEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHTCCTTCCSCSEEEEEEECSSSCCEEBCTT
T ss_pred HHHHHHHHhCceEEEEeCCCCeecccccCCCCCHHHHHHHHHHHHHHHHHhCccccCCCeEEEEEEECCCCcCeEeCCC
Confidence 9999999986 57899999999999999999999999999999999999999999976 9999999999999998654
No 11
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=4.5e-33 Score=259.80 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=154.3
Q ss_pred eEEEEEEeccCCCCCccceeeEeCCCCCCCCCCCCCCEEEEEecCCCCCchhHHHHHHHhhhCCCCcceeeehhhhhhhc
Q 014066 52 FVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDY 131 (431)
Q Consensus 52 ~V~L~VtLKkip~k~k~~p~~I~LPHpl~~~~~~~~~kICLIvkD~~~~~~t~~e~kekl~a~~i~i~kVI~lkkLk~ky 131 (431)
.|+|++++++ +.+...+.+.|.|||++.+. ..+||||+++++.. + .++++|+ .+++.++|..++
T Consensus 2 ~ieL~m~l~~-~r~~~~~rg~V~LPhg~~k~----~~~V~Vfa~~~~~~----~----~Ak~aGa---d~vg~~dLi~ki 65 (189)
T 2ftc_A 2 DLTLDMALGK-KKNVEPFTSVLSLPYPFASE----INKVAVFTENASEV----K----IAEENGA---AFAGGTSLIQKI 65 (189)
T ss_pred eEEEEEEecC-CccCcccceEEECCCCCCCC----CCEEEEEeCChhHH----H----HHHHcCC---CCcCHHHHHHHH
Confidence 5889999998 55544558899999998753 56999999986321 2 2456677 478899997776
Q ss_pred chHHHHhhccccccEEEEcCCchhhhhhhhcccccCCCCCCeeecCC-cccHHHHHHHHHccceEEccCCC--EEEEEEe
Q 014066 132 RPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQNWKEQIEKVCGSALLYLRTGT--CSVLKVG 208 (431)
Q Consensus 132 KsfE~kRKL~~sYDlFLAD~rI~~~LpklLGK~F~kkkK~PipV~lt-~~dLk~~Ieka~~St~~~l~kG~--~~sVkVG 208 (431)
+. -..+||+|||++++|+.|+++ |+.|++ |||+|+.+| ..|+.+.|+++++++.|++.+.. |++++||
T Consensus 66 ~~------~~~~fD~~iAtp~~m~~l~~l-~~~Lg~--KmP~pk~gTvt~dv~~~v~~~k~g~~~r~~k~~~~~i~v~VG 136 (189)
T 2ftc_A 66 WD------DEIVADFYVAVPEIMPELNRL-RKKLNK--KYPKLSRNSIGRDIPKMLELFKNGHEIKVDEERENFLQTKIA 136 (189)
T ss_pred Hc------CCccCCEEEECHHHHHHHHHh-hccccC--CCCcccCCCccccHHHHHHHHhcceEEEeccCCCcEEEEEEE
Confidence 53 237899999999999999985 667874 599999997 78999999999999999999888 9999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhcCCCC-CCccEEEEEcCCCcceEEecc
Q 014066 209 KVSMGAEDIAENVIAAINGVAEIVPRKW-GNVRSFHLKLLESLALPVYQA 257 (431)
Q Consensus 209 ~~sMs~eqIvENI~avl~~l~~~lPkg~-~NIksI~LKtt~S~aLPIY~s 257 (431)
+++|+++||+|||.+++++|.+.+|.+| +||+++||+|||||+++|-..
T Consensus 137 ~~~~~~e~L~eNi~a~i~~l~~~~p~~~g~~ik~v~lssTmgp~i~i~~~ 186 (189)
T 2ftc_A 137 TLDMSSDQIAANLQAVINEVCRHRPLNLGPFVVRAFLRSSTSEGLLLKID 186 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCchhcCccEEEEEEECCCCCCEEEehh
Confidence 9999999999999999999999999999 799999999999999988643
No 12
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=99.75 E-value=2e-17 Score=147.13 Aligned_cols=66 Identities=20% Similarity=0.165 Sum_probs=63.0
Q ss_pred ccceEEccCCCEEEEEEecCCCChhHHHHHHHHHHHHHHHhcCCCC--CCccEEEEEcCCCcceEEec
Q 014066 191 GSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKW--GNVRSFHLKLLESLALPVYQ 256 (431)
Q Consensus 191 ~St~~~l~kG~~~sVkVG~~sMs~eqIvENI~avl~~l~~~lPkg~--~NIksI~LKtt~S~aLPIY~ 256 (431)
+++.|++.+..|++++||+++|+++||+|||.+++++|...+|.+| +||++|||+|||||+++|-.
T Consensus 68 g~v~fr~dk~~~ih~~VGk~sf~~e~L~eNi~a~i~~l~~~kp~~~kg~~ik~v~issTMGp~i~id~ 135 (137)
T 2ov7_A 68 GRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINP 135 (137)
T ss_dssp CEEEEECCTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHTTSCSSCCSCSEEEEEEEETTSCCEEBCT
T ss_pred CeEEEEECCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHhCcccccCceEEEEEEECCCCCCEEecC
Confidence 7789999999999999999999999999999999999999999999 59999999999999999754
Done!