RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014066
(431 letters)
>gnl|CDD|216061 pfam00687, Ribosomal_L1, Ribosomal protein L1p/L10e family. This
family includes prokaryotic L1 and eukaryotic L10.
Length = 200
Score = 159 bits (404), Expect = 8e-47
Identities = 64/206 (31%), Positives = 98/206 (47%), Gaps = 18/206 (8%)
Query: 48 EQDDFVYLILTLKKIPQVSRTN-AFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDA 106
+ D+ V L + LKK P+ N + LPH L ++C+I D
Sbjct: 11 KFDETVELQINLKKDPRKKDQNVRGTVVLPHGL-----GKDVKVCVIAKDP--------- 56
Query: 107 VMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFF 166
K K V+ LK Y + RKL +D+FLAD ++PLLPKLLGK
Sbjct: 57 -EAKAKEAKDAGADVVGGEDLKEKY-KIKKGRKLAKDFDVFLADPDIMPLLPKLLGKVLG 114
Query: 167 KKKKIPVPVDLKHQNWKEQIEKVCGSALLYLR-TGTCSVLKVGKVSMGAEDIAENVIAAI 225
+ K+P P + + IE+ + + + G C +KVGKVSM E++ EN+ A I
Sbjct: 115 PRGKMPNPKTTVTPDVAKAIEEAKSGTVEFRKDKGGCIHVKVGKVSMSPEELVENIEAVI 174
Query: 226 NGVAEIVPRKWGNVRSFHLKLLESLA 251
N + + +P+ W N++S +LK +
Sbjct: 175 NALVKKLPKGWQNIKSVYLKTTMGPS 200
>gnl|CDD|238235 cd00403, Ribosomal_L1, Ribosomal protein L1. The L1 protein,
located near the E-site of the ribosome, forms part of
the L1 stalk along with 23S rRNA. In bacteria and
archaea, L1 functions both as a ribosomal protein that
binds rRNA, and as a translation repressor that binds
its own mRNA. Like several other large ribosomal
subunit proteins, L1 displays RNA chaperone activity.
L1 is one of the largest ribosomal proteins. It is
composed of two domains that cycle between open and
closed conformations via a hinge motion. The RNA-binding
site of L1 is highly conserved, with both mRNA and rRNA
binding the same binding site.
Length = 208
Score = 141 bits (357), Expect = 8e-40
Identities = 72/234 (30%), Positives = 108/234 (46%), Gaps = 29/234 (12%)
Query: 24 VERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTN-AFKIPLPHSLLGN 82
+E A+KAL K + + D+ V L + LKK + + LPH L +
Sbjct: 1 LEEAIKALKKTSV--------KKRKFDETVELQINLKKDDRKKDQRIRGTVILPHGLGKD 52
Query: 83 DSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCD 142
+C+ KD K+ K V+ LK + EAK KL
Sbjct: 53 VK-----VCVF---------AKDEQAKEAKAA---GADVVGGEDLKKKIKNGEAK-KLAK 94
Query: 143 SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLK-HQNWKEQIEKVCGSALLYLRTGT 201
+D+FLAD R++ LLPKLLGK + K+P P ++ + IE+ S L G
Sbjct: 95 DFDLFLADPRIMMLLPKLLGKVLGPRGKMPNPKTGTVTEDLAKAIEEAKSSVEFRLDKGG 154
Query: 202 CSVLKVGKVSMGAEDIAENVIAAINGVAEIVP-RKWGNVRSFHLKLLESLALPV 254
C + VGKVSM E + EN+ A IN + + +P +K N++S +LK +LP+
Sbjct: 155 CIHVPVGKVSMSPEQLVENIEAVINALVKKLPSKKGQNIKSIYLKTTMGPSLPI 208
>gnl|CDD|185405 PTZ00029, PTZ00029, 60S ribosomal protein L10a; Provisional.
Length = 216
Score = 61.3 bits (149), Expect = 7e-11
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
+KL YD FLA + ++P +P+LLG K K P + + + +++I ++ S L
Sbjct: 100 KKLAKKYDAFLASQSLLPQIPRLLGPGLNKAGKFPTLI-THNDDIEDKINELKSSVKFQL 158
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ C + VG V M E + +N++ +IN + ++ + W N+++ H+K
Sbjct: 159 KKVLCLGVAVGNVEMTEEQLRQNIVLSINFLVSLLKKNWQNIKTLHIK 206
>gnl|CDD|140252 PTZ00225, PTZ00225, 60S ribosomal protein L10a; Provisional.
Length = 214
Score = 56.6 bits (136), Expect = 3e-09
Identities = 53/230 (23%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 17 SRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKI-PQVSRTNAFKIPL 75
S++ P+T+ A++A+LK K + + L + LK PQ + + + L
Sbjct: 2 SKIPPQTLSEAIQAVLKVDKERKFKES---------IDLQVNLKNYDPQKDKRFSGSLKL 52
Query: 76 PHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFE 135
P+ + +CL+ D L + + KK + +P ++ KL + +
Sbjct: 53 PNVCRPRMT-----VCLLCD------LVHEDIAKK---EGVPTMNQEELKKLNKNKKLV- 97
Query: 136 AKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALL 195
+K+C+ YD FL + ++ +P+L+G H + K P V ++ +++ ++ +
Sbjct: 98 --KKMCNQYDAFLCSESIIKTVPRLVGPHMHRMGKFPT-VCSPSESLPDKVVELRSTVKF 154
Query: 196 YLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
L+ C VG V M E + +NV+ AIN + ++ + W N++S ++K
Sbjct: 155 QLKKVLCLGTCVGHVEMTEEQLRQNVVMAINFLVSLLKKNWQNLKSAYIK 204
>gnl|CDD|235254 PRK04203, rpl1P, 50S ribosomal protein L1P; Reviewed.
Length = 215
Score = 48.3 bits (116), Expect = 2e-06
Identities = 28/111 (25%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 136 AKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALL 195
A +KL + YD F+A+ ++PL+ + LG + K+P P+ + + K +E++ + +
Sbjct: 96 AAKKLANEYDFFIAEADLMPLIGRYLGPVLGPRGKMPTPLP-PNADIKPLVERLKNTVRI 154
Query: 196 YLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKL 246
+ ++VG M E++AEN+ A +N + + + N++S ++K
Sbjct: 155 RTKDQPTFHVRVGTEDMSPEELAENIDAVLNRIESKLEKGRQNIKSVYVKT 205
>gnl|CDD|223159 COG0081, RplA, Ribosomal protein L1 [Translation, ribosomal
structure and biogenesis].
Length = 228
Score = 43.4 bits (103), Expect = 8e-05
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 135 EAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKH-QNWKEQIEKVCGSA 193
K +D+F+A ++PL+ LGK + +P P + + +E++
Sbjct: 103 LIKNGRAKDFDVFIATPDMMPLV-GKLGKVLGPRGLMPNPKTGTVTDDVAKAVEELKKGT 161
Query: 194 LLYL--RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPR--KWGNVRSFHLKLLES 249
+ + + G V +GKVS E +AEN+ A +N + + P K ++S ++
Sbjct: 162 VEFRADKAGVIHVP-IGKVSFDDEKLAENIEALLNAIVKAKPAGAKGQYIKSVYVSTTMG 220
Query: 250 LALPVYQA 257
+ V A
Sbjct: 221 PGVKVDLA 228
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 41.1 bits (96), Expect = 0.001
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 276 QDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMD-----STIGEVLDEDELGSDDDGE 330
+D+ E ++ HG K+K+KK+ + V S + E + D L S+D+
Sbjct: 724 EDESGEVFRRYRISPHGGKRKIKKRNDSVVSVDEEKAIEGPSRVPERGNHDLLHSEDEMA 783
Query: 331 GDVGESEDGEDSED 344
D ESE+ +D ED
Sbjct: 784 DDEAESENMDDYED 797
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 39.2 bits (91), Expect = 0.004
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 256 QAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIG 315
QA D ++K + E + E + + E E ++ + K E G
Sbjct: 784 QAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQG 843
Query: 316 EVLDEDELGSDDDGEGDVGESEDGEDSED 344
E +DE G D G D G+SE+ E+ E+
Sbjct: 844 EA-KQDEKGVDGGGGSDGGDSEEEEEEEE 871
Score = 35.4 bits (81), Expect = 0.070
Identities = 27/131 (20%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 270 ENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDG 329
E+EGE + + +E ++ K + +G E + T E G +D+
Sbjct: 727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAE-------GKEDED 779
Query: 330 EGDVGESEDGE-DSEDGKMSSGDILGKKRKKGDKERAQKLPKKVA--KVKKDELSSDMKN 386
EG++ EDGE ++G + G+ E + + +VK + ++
Sbjct: 780 EGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNA 839
Query: 387 EDVGKQKKQKK 397
E+ G+ K+ +K
Sbjct: 840 ENQGEAKQDEK 850
Score = 32.3 bits (73), Expect = 0.67
Identities = 35/166 (21%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 266 EGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIH-EVRYMDSTIGEV------- 317
EG + E EG+ E + K + +G I E + GE+
Sbjct: 648 EGERPTEAEGE-NGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADH 706
Query: 318 -------LDEDELGSDDDGEGDVGESEDGEDSED-GKMSSGDILGKK--RKKGDKERAQK 367
E E ++ +G D GE E GE+ E+ G+ GK +GD++ +
Sbjct: 707 KGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEH 766
Query: 368 LPKKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKE 413
+ A+ K+DE +++ + G+ K + ++++ E +G++
Sbjct: 767 EGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEK 812
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 36.9 bits (85), Expect = 0.020
Identities = 35/159 (22%), Positives = 56/159 (35%), Gaps = 24/159 (15%)
Query: 263 LKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRI------------------ 304
+ +G + ++G + + + + KK KKG+
Sbjct: 222 DEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEG 281
Query: 305 HEVRYM--DSTIGEVLDEDE-LGSDDDGE-GDVGESEDGEDSEDGKMSSGDILGKKRKK- 359
E Y+ S G +E E S + ++ + ED E+SE+ K L KK KK
Sbjct: 282 REEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKL 341
Query: 360 -GDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKK 397
K + L K + D SD+ ED KK
Sbjct: 342 KKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKK 380
Score = 34.6 bits (79), Expect = 0.094
Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 16/163 (9%)
Query: 262 KLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDED 321
+ K +K+ EG+ +D E + + D KK KKK + + ++ D+
Sbjct: 209 RGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKK---------KLDDDK 259
Query: 322 ELGSDDDGEGDVGESEDGEDSE-------DGKMSSGDILGKKRKKGDKERAQKLPKKVAK 374
+ D + D +S+DG+D D S D ++ K + A+ ++
Sbjct: 260 KGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDED 319
Query: 375 VKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKS 417
++ E + + + K+ K+ K KN +K S
Sbjct: 320 SEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDS 362
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 37.0 bits (86), Expect = 0.021
Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 33/202 (16%)
Query: 260 DLKLKIEGVKENEGEGQDKDSEKENAED---VNDHGSKKKLKKKKGRIHEVRYMDSTIGE 316
+L+ KIEG +E + + +E ED +D G + +KK + D
Sbjct: 313 ELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSG 372
Query: 317 VL------------------DEDELGSDDDGEGDVGESEDGEDSED--GKMSSGDILGKK 356
+L + +EL + +GE + E E+ E S+ G+ G G+K
Sbjct: 373 LLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEK 432
Query: 357 RKKGDKERAQKLPKKVAKVKKDELSSDMKNED----------VGKQKKQKKVGLSLKNDE 406
+ K + + + K + DE E+ + + +K +K + DE
Sbjct: 433 EAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDE 492
Query: 407 EKSSGKEKKKSMLGKVKKEKKK 428
E K K++ KK
Sbjct: 493 ENPWLKTTSSVGKSAKKQDSKK 514
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 36.7 bits (84), Expect = 0.029
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)
Query: 264 KIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDEL 323
K E VK+ E E + E + AE+ ++ +K ++ + R E DEL
Sbjct: 1225 KAEAVKKAE-EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADEL 1283
Query: 324 GSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKV--AKVKKDEL- 380
++ ++++ + +E+ K + K+K + ++A + KK AK K D
Sbjct: 1284 KKAEE----KKKADEAKKAEEKKKADE----AKKKAEEAKKADEAKKKAEEAKKKADAAK 1335
Query: 381 --SSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
+ + K + + + + EEK+ EKKK K KK
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Score = 35.1 bits (80), Expect = 0.077
Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 260 DLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLD 319
+ K K E K+ + K E + A + K + E + E
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEA-----AKAEAEAAADEAEAAEEKAEAAEKKK 1373
Query: 320 EDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDE 379
E+ D + E + +++ KK+ + DK++A +L K A KK +
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEA------------KKKAEEDKKKADELKKAAAAKKKAD 1421
Query: 380 LSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
+ E + +KK + K DE K +E KK+ K K E+ K
Sbjct: 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
Score = 34.7 bits (79), Expect = 0.11
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 14/174 (8%)
Query: 261 LKLKIEGVKENEGEGQDKDSEKENAEDVN--DHGSKKKLKKKKGRIHEVRYMDSTIGEVL 318
+KL E K E + + K AE++ + KK + KK E + + E+
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE----ELK 1653
Query: 319 DEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKD 378
+E E ED + +E+ K + D +K+ ++ + KK ++KK
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED---EKKAAEALKKEAEEAKKAEELKKK 1710
Query: 379 ELSSDMKNEDVGKQKKQKKVGL-SLKNDEEKSSGKEKKKSMLGKVKKEKKKLVA 431
E K E++ K +++ K+ K + E ++KKK+ K +E+KK +A
Sbjct: 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAE----EDKKKAEEAKKDEEEKKKIA 1760
Score = 34.7 bits (79), Expect = 0.11
Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 11/170 (6%)
Query: 260 DLKLKIEGVKENEGEGQDKDSEKENAEDVND-HGSKKKLKKKKGRIHEVRYMDSTIGEVL 318
K K E K+ + + + +K+ A+++ +KKK + K + E + D +
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA- 1440
Query: 319 DEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKD 378
+E D+ + E++ E+++ + K+K + ++A + KK + KK
Sbjct: 1441 --EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK- 1497
Query: 379 ELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
K ++ K + KK K EE E KK+ K E KK
Sbjct: 1498 ------KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 33.2 bits (75), Expect = 0.37
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 272 EGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEG 331
+ E + K E + AE++ KKK ++ K + E + M E + E ++
Sbjct: 1541 KAEEKKKADELKKAEELKKAEEKKKAEEAK-KAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
Query: 332 DVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGK 391
E + + E K I ++ KK ++E+ KKV ++KK E K E++ K
Sbjct: 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK-----KKVEQLKKKEAEEKKKAEELKK 1654
Query: 392 QKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
+++ K+ +E K + ++KKK+ K +E +K
Sbjct: 1655 AEEENKIK---AAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Score = 32.8 bits (74), Expect = 0.50
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 277 DKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGES 336
+ EK A + +KKK K + E + D + E D ++
Sbjct: 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE------------AKKKAEEDKKKA 1407
Query: 337 EDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQK 396
++ + + K + + K+K +K++A + KK + KK + + E ++ +K
Sbjct: 1408 DELKKAAAAKKKADEA---KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Query: 397 KVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
K + K DE K +E KK+ K K E+ K
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
Score = 30.9 bits (69), Expect = 1.6
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 7/170 (4%)
Query: 264 KIEGVKENEGEGQDKDSEKENAEDVNDHGSKKK----LKKKKGRIHEVRYMDSTIGEVLD 319
K K+ E + K EK+ A++ + K KKK + E
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Query: 320 EDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDE 379
DE + E++ + K + +KK D+ + + KK + KK E
Sbjct: 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
Query: 380 LSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKKL 429
+ K D K+ ++KK LK EE +EKKK+ K +E K +
Sbjct: 1532 ---EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM 1578
Score = 28.6 bits (63), Expect = 8.2
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 11/171 (6%)
Query: 260 DLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDST--IGEV 317
+ K K E K+ E + K+ A++ KK + K + E + D E
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK-KAEEAKKADEAKKAEEK 1545
Query: 318 LDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKK 377
DEL ++ + ++E+ + +E+ K + D RK + ++A++ + +K
Sbjct: 1546 KKADELKKAEE----LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE-ARIEEVMKL 1600
Query: 378 DELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
E MK E+ K ++ K LK EE+ K+K + + K +EKKK
Sbjct: 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEE---KKKVEQLKKKEAEEKKK 1648
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 35.5 bits (82), Expect = 0.059
Identities = 24/121 (19%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 310 MDSTIGEVLDEDEL--------GSDDDGEGDVGESEDGEDSEDGKMSSGDI-LGKKRKKG 360
+++ E DE+EL DD E + ++ E+ ++ S + K+ K
Sbjct: 5 VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKAR 64
Query: 361 DKERAQKLPKKVAKVKKDE---LSSDMKNEDVGKQK---KQKKVGLSLKNDEEKSSGKEK 414
KE ++ +++ K+ + + + +DM N+ G+ K +Q ++ ++ +S K+
Sbjct: 65 LKELKKQKKQEIQKILEQQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDQSASAKKA 124
Query: 415 K 415
K
Sbjct: 125 K 125
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 34.7 bits (80), Expect = 0.068
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 269 KENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDD 328
K EG G K + + S K+ + + + DED + SD D
Sbjct: 215 KGAEGGGAMKVLK----QPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLD 270
Query: 329 GEGDVGESEDGEDSED 344
D EDGED D
Sbjct: 271 DSDDDVSDEDGEDLFD 286
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 35.0 bits (81), Expect = 0.093
Identities = 33/180 (18%), Positives = 62/180 (34%), Gaps = 11/180 (6%)
Query: 257 AVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGE 316
P LK K + K++ + K S N++ V+ K+KL K +
Sbjct: 1170 RKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD-EKRKLDDKPDNKKSNSSGSDQEDD 1228
Query: 317 VLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDK-------ERAQKLP 369
+ + ++ + SED S D L K+ K + + + P
Sbjct: 1229 EEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPP 1288
Query: 370 KKVAKVKKD--ELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSG-KEKKKSMLGKVKKEK 426
K + + S + V K+ + L K EK + K+K K+ + + +
Sbjct: 1289 SKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQ 1348
Score = 33.9 bits (78), Expect = 0.21
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 3/153 (1%)
Query: 276 QDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGE 335
+ K+ +K+ + + K+ E R +D S D E D +
Sbjct: 1175 KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSN---SSGSDQEDDEEQ 1231
Query: 336 SEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQ 395
+ S ++ S K + + E + K K K K+
Sbjct: 1232 KTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKR 1291
Query: 396 KKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
+ + + K+ KK + G + KKK
Sbjct: 1292 PDGESNGGSKPSSPTKKKVKKRLEGSLAALKKK 1324
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 33.8 bits (78), Expect = 0.18
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 262 KLKIEGVKENEGEGQDKDSE---KENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVL 318
KL+ E ++ GE +D + E KE+A+D++D + G + V
Sbjct: 273 KLEAERLRRMRGEEEDDEEEEDSKESADDLDD-EFEPDDDDNFGLGQGEEDEEEEEDGVD 331
Query: 319 DEDELGSDDDGEGDVGESEDGEDSEDGKMSSGD 351
DEDE DDD E + + + ++ ED + D
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSD 364
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 33.1 bits (76), Expect = 0.21
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 319 DEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKD 378
+E+E D D + + + +D E+G+ K+KK K +A K P K K KKD
Sbjct: 48 EEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTK-KKKKKD 106
Query: 379 ELSSDMKNEDVGKQKKQKKVGLSLKNDEEK-------SSGKEKKKSMLGKVKKEKKK 428
++ + KK+ + + SS + K++ ++K+ + +
Sbjct: 107 PTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIR 163
>gnl|CDD|220303 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 32.3 bits (74), Expect = 0.34
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 375 VKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKKL 429
+KKDE SS ++ED KQ + ++ L + +E SS KK + K+KK +KKL
Sbjct: 147 IKKDENSSVSEHEDF-KQLENEENFLETEYNEITSSNNYKKLKINRKLKKAEKKL 200
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 32.0 bits (73), Expect = 0.63
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 266 EGVKENEGEGQDKDSEKENAEDVNDHGS--KKKLKKKKGRIHEVRYMDSTIGEVLDEDEL 323
++ + + D +K+ + D ++ K L K I DS + D+++
Sbjct: 437 ADDEDEDDDEPDDSEDKDVSFDEDEFFEFLKNMLGLKDDEIDNDLPDDSDDADEDDDEDD 496
Query: 324 GSDDDGEGDVGESEDGE-----DSEDGKMSSGDILGKKRKKGDKERAQK 367
D+D D E E D+E + S +
Sbjct: 497 DEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNSGSSGAEDDD 545
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 31.9 bits (73), Expect = 0.68
Identities = 8/60 (13%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 316 EVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKV 375
++ ++D+ + D E + + ++ +D DI ++R ++ R ++ ++
Sbjct: 122 DLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSL-ERRRRRREWEEKRAE 180
>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein. The
low-temperature viability protein LTV1 is involved in
ribosome biogenesis 40S subunit production.
Length = 426
Score = 31.1 bits (70), Expect = 1.0
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 16/162 (9%)
Query: 259 PDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVL 318
P L+ +E +++ D++SE+++ E+ + E D + L
Sbjct: 157 PRLREVLEALEDEAYVRNDEESEEDDGEEWEEMDD------------EEGSDDRSSAGFL 204
Query: 319 DE--DELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVK 376
DE D E E++E + R+ D + KK K
Sbjct: 205 DEFEDLSAPGSPQEAMKKHLFVEEETESRNTEYSETSEVMRRNEDWTLHFERFKKFEKKN 264
Query: 377 KDELSSDMKNEDVGKQKKQKKVGL--SLKNDEEKSSGKEKKK 416
D N ++ + L L + + K K K
Sbjct: 265 DDVEIGAADNSELEGSIEVDSNRLQEVLNDYYKTEKAKSKVK 306
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 31.2 bits (71), Expect = 1.0
Identities = 19/73 (26%), Positives = 30/73 (41%)
Query: 358 KKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKS 417
+E + K KK++ +++ K + K+KK+K+ E K K KKS
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKS 99
Query: 418 MLGKVKKEKKKLV 430
K K K K
Sbjct: 100 KKTKKKPPKPKPN 112
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 31.3 bits (71), Expect = 1.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 290 DHGSKKKLKKKKGRIHE-----VRYMDSTIGEVLDE-DELGSDDD 328
G + ++ R+ VRY+D IG +LD ELG D+
Sbjct: 244 ADGLPAEEEEDGARLMTVYAACVRYLDDQIGRLLDALKELGLLDN 288
>gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 341
Score = 31.0 bits (71), Expect = 1.2
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 18/69 (26%)
Query: 105 DAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKH 164
DAV + P +++ + K K DY A K Y +++AD
Sbjct: 18 DAVAAQ------PDMELVGVAKTKPDYEARVAVEK---GYPLYVADPEREKA-------- 60
Query: 165 FFKKKKIPV 173
F++ IPV
Sbjct: 61 -FEEAGIPV 68
>gnl|CDD|221237 pfam11810, DUF3332, Domain of unknown function (DUF3332). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria.
Length = 175
Score = 30.4 bits (69), Expect = 1.3
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 260 DLKLKIEGVKENEGEGQDKD----SEKENAEDVNDH-GSKKKLKKKKGRIHEVRYMDSTI 314
D L VK EG+ E V + GS L K Y+D +
Sbjct: 100 DKSLTEAPVKITNREGEGATVEQIDENTLQMWVTYNDGSSATLLGMKEDGTVDFYLDGEL 159
Query: 315 GEVLDEDELGS 325
V L +
Sbjct: 160 VTVTSLQGLEA 170
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 30.8 bits (69), Expect = 1.4
Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 21/149 (14%)
Query: 280 SEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGESEDG 339
E + ++ + + + D E+ + EL + G + SE
Sbjct: 463 MTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQG---IKYSETS 519
Query: 340 EDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKKVG 399
E +D S KKRK ++E +KL + K+ +L MK + K
Sbjct: 520 EADKDVNKSKN----KKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKK-------- 567
Query: 400 LSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
EE++ +KKK + K KK K
Sbjct: 568 ------EEQAENLKKKKKQIAKQKKLDSK 590
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.1 bits (70), Expect = 1.5
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 316 EVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGD-KERAQKLPKKVAK 374
+ L+E D + D+ ESE E D + D + + + D +E Q L ++V
Sbjct: 3835 DDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVND 3894
Query: 375 VKKDELSS------DMKNEDVGKQKKQKKVGLSLKNDEEKSSGKE 413
+ +D +S D NE+ + +QK S N+E KE
Sbjct: 3895 IPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKE 3939
Score = 30.0 bits (67), Expect = 3.1
Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 26/152 (17%)
Query: 266 EGVKENEGE-----GQDKDSEKENAEDVN---------DHGSKKKLKKKKGRIHEVRYMD 311
KE+E E G D + + + E+ + D KL +K+G + + ++
Sbjct: 3950 RQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLE 4009
Query: 312 STIGEVLDEDELGSDDDG-----EGDVGESEDGEDSEDGKMSSGDIL---GKKRKKGDKE 363
E DE++ +D + + D E + D + + D+ K + G +E
Sbjct: 4010 DMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4069
Query: 364 RAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQ 395
Q+ + +D + SD + E + Q
Sbjct: 4070 NVQENEEST----EDGVKSDEELEQGEVPEDQ 4097
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 30.4 bits (68), Expect = 1.6
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 269 KENEGEGQDKDSEKENA--EDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSD 326
+++E E ++ E+ + E V D K+K KKK E LGSD
Sbjct: 196 RQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDL-----------------EKWLGSD 238
Query: 327 DDGEGDVGESEDGEDSEDGKMSSGDILG--KKRKKGDKERAQK 367
E E E+ +SE + D G +KRK D ++++K
Sbjct: 239 QSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRK 281
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 28.3 bits (64), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 319 DEDELGSDDDGEGDVGESEDGEDSEDG 345
+E+E G D + E + E ED +D DG
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDMDG 75
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 29.2 bits (66), Expect = 1.8
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 282 KENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGESEDGED 341
E E++ K KKKK +++D+D L DD E D+ E +D ++
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKF--------MDGDDDIIDDDILPDDDFDEEDLDEEDDEDE 125
Query: 342 SED 344
++
Sbjct: 126 EDE 128
>gnl|CDD|180071 PRK05424, rplA, 50S ribosomal protein L1; Validated.
Length = 230
Score = 30.1 bits (69), Expect = 2.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 206 KVGKVSMGAEDIAENVIAAIN 226
+GKVS AE + EN+ A I+
Sbjct: 173 PIGKVSFDAEKLKENLKALID 193
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 29.8 bits (67), Expect = 3.2
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 330 EGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDV 389
G +G SE S + ++ + +KK K + K + DE D +
Sbjct: 394 AGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTSTK-GGTAESIPDDE--EDAPKKGK 450
Query: 390 GKQKKQKKVGLSLKNDEEKSSGKEKKKS 417
QKK + + +D + KE KS
Sbjct: 451 KNQKKGRDKSSKVPSDSKAGGKKESVKS 478
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.9 bits (67), Expect = 3.3
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 355 KKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEK 414
+++KK ++ ++ + K + E + E +K+KKV +EEK + +
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK----EKEKKVEEPRDREEEKKRERVR 170
Query: 415 KKSMLGKVKKEKKK 428
KS K K+K
Sbjct: 171 AKSRPKKPPKKKPP 184
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 29.6 bits (67), Expect = 3.5
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 63 PQVSRTNAFKIPLPHSLL--GNDSDNPPEICLIMDDR 97
P + PLPH + G+D + P EI + M D+
Sbjct: 255 PDMKSHLDLGNPLPHVSVSAGSDENAPEEIVVKMGDK 291
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 28.5 bits (64), Expect = 3.6
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 268 VKENE-GEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSD 326
K+ E G+G ++ E E+ +D + K+ I + D E+G D
Sbjct: 79 AKQMEYGDGAEEIVEDEDEDDGWVTTHGNRDKQ-----------KDDIADEEDIPEIGDD 127
Query: 327 DDGEGDVGESEDGEDSED 344
DD D ++++ +D +
Sbjct: 128 DDDVVDSSDADEDDDDDI 145
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 29.6 bits (66), Expect = 3.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 311 DSTIGEVLDEDELGSDDDGEGDVGESEDGED--SEDGKMSSGDILGKKRK 358
+ + ED S+D+ E D + EDGED + K + GK+RK
Sbjct: 954 EDEESDESSED--LSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRRK 1001
>gnl|CDD|235626 PRK05853, PRK05853, hypothetical protein; Validated.
Length = 161
Score = 28.6 bits (64), Expect = 4.1
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 303 RIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGD 351
RI + RY + GE G+ D + ++ D D ++G
Sbjct: 106 RIEKPRYTGPSAGEAPAATGTGAADAADAPASAADSVSDVVDDDAATGH 154
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 29.2 bits (65), Expect = 4.2
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 278 KDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDDGEGDVGESE 337
+ + +ND K+ +K G+ E M+ + D+D+ +D+ + D + E
Sbjct: 18 GSLDYKEKLTLNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDE 77
Query: 338 DGEDSED 344
D ED +D
Sbjct: 78 DDEDEDD 84
>gnl|CDD|131944 TIGR02898, spore_YhcN_YlaJ, sporulation lipoprotein, YhcN/YlaJ
family. YhcN and YlaJ are predicted lipoproteins that
have been detected as spore proteins but not vegetative
proteins in Bacillus subtilis. Both appear to be
expressed under control of the RNA polymerase sigma-G
factor. The YlaJ-like members of this family have a
low-complexity, strongly acidic 40-residue C-terminal
domain that is not included in the seed alignment for
this model. A portion of the low-complexity region
between the lipoprotein signal sequence and the main
conserved region of the protein family was also excised
from the seed alignment [Cellular processes, Sporulation
and germination].
Length = 158
Score = 28.1 bits (63), Expect = 5.3
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 332 DVGESEDGEDSEDGKMSSGDILGKKRKKGDK-ERAQKLPKKVAKVKKDELSSDMKNEDVG 390
+VGE+ + +G ++ D GD + A ++ + AKVK +K+ V
Sbjct: 27 NVGETNVMSKNNNGMNTTND-----TNDGDLYDVADEIASEAAKVK------GVKDATVV 75
Query: 391 KQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKKL 429
VG+ L N E S E K+ + VK ++
Sbjct: 76 ITGNYAYVGVDLTNGLEGSVTDELKEKVAETVKSTDNRI 114
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 29.0 bits (65), Expect = 6.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 358 KKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKK 415
K+ E ++ KK AK KKD ++ K K + V S ++KSS E K
Sbjct: 191 KEEKAEERKQESKKGAKRKKDA----SGDDKSKKAKTDRDVSTSTAASQKKSSDLESK 244
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 28.5 bits (64), Expect = 6.2
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 18/106 (16%)
Query: 319 DEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKD 378
E E G + D + D E + E+ ED I V K+
Sbjct: 86 KEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI------------------DVESDKEI 127
Query: 379 ELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKK 424
E S E+ + K+ K + EE +++ + +K
Sbjct: 128 ESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 28.6 bits (64), Expect = 6.5
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 319 DEDELGSDDDGEGDVGESEDGEDSEDGKMSSGD 351
DED+ +++ G + D+ +M SG+
Sbjct: 233 DEDDDQGEEEESGSSDSLSEDSDASSEEMESGE 265
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.1 bits (63), Expect = 6.7
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 355 KKRKKGDKERAQKLPKKVAKVK--KDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGK 412
KK+KK E +K+ K+ + + K + K +D K KK K K+D+ + +
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK-----KDDKSEKKDE 115
Query: 413 EKKKSMLGKVKKEKKK 428
++ + L + K +
Sbjct: 116 KEAEDKLEDLTKSYSE 131
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 28.5 bits (63), Expect = 6.9
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 266 EGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKK--GRIH-EVRYMDST--IGEVLDE 320
E E+ E + D E E + S K+ + R H EV S GE D+
Sbjct: 37 EPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRRTHTEVGSGSSAKGSGERADK 96
Query: 321 DELGSDDDGEGDVGESEDG 339
G D G G+++ G
Sbjct: 97 HADGGDGKTRGGGGDADKG 115
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus. This
family represents the C-terminus (approximately 500
residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have been
proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 28.3 bits (63), Expect = 8.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 318 LDEDELGSDDDGEGDVGESEDGEDSEDG 345
LDED +DG D E +G D E G
Sbjct: 49 LDEDGYLEGEDGLLDDEEGPEGGDEEGG 76
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 28.7 bits (64), Expect = 8.0
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 277 DKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIG---EVLDEDELGSDDDGEGDV 333
+ E + ED++ ++ ++ R+ VR M ++ E D+ D+ +GD
Sbjct: 181 RDEIEDKAGEDLDGLAAEIDDQQAFARV--VRDMLGSMDMAEETGDDGIEEDADEEDGDD 238
Query: 334 GESEDGEDSEDG 345
+ ++ EDSE G
Sbjct: 239 DQPDNNEDSEAG 250
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 28.6 bits (64), Expect = 8.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 269 KENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEV 307
E EG D + + E D + G+KKK KKK+ R E
Sbjct: 158 PETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRKPES 196
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 28.5 bits (63), Expect = 8.6
Identities = 19/87 (21%), Positives = 34/87 (39%)
Query: 341 DSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAKVKKDELSSDMKNEDVGKQKKQKKVGL 400
+ D + + KK+ +RA K +E S + NED K+ KK
Sbjct: 56 LAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPR 115
Query: 401 SLKNDEEKSSGKEKKKSMLGKVKKEKK 427
+ +S +++ KV+K +K
Sbjct: 116 RTRRKAAAASSDVEEEKTEKKVRKRRK 142
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 28.3 bits (63), Expect = 9.4
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 32 LKWLKSNSQTQKPQLLEQDDFVYLILTLKKIP-----QVSRTNAFKIPLPH 77
+ ++ + Q+ L +Q F LIL+ +++P + + + IPL H
Sbjct: 935 INFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLH 985
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.132 0.364
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,706,171
Number of extensions: 2166534
Number of successful extensions: 2951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2517
Number of HSP's successfully gapped: 238
Length of query: 431
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 331
Effective length of database: 6,502,202
Effective search space: 2152228862
Effective search space used: 2152228862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (26.9 bits)