RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014066
(431 letters)
>3o58_A L10A, 60S ribosomal protein L1; ribosomal RNA and proteins,
ribosome; 4.00A {Saccharomyces cerevisiae} PDB: 3izc_A
3izs_A 1s1i_A 3o5h_A 2noq_G 3j0l_B 3j0o_B 3j0p_B 3j0q_B
3jyw_A
Length = 217
Score = 64.8 bits (158), Expect = 3e-12
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 127 LKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQI 186
LK + + +KL Y+ F+A + ++ +P+LLG K K P PV + ++
Sbjct: 90 LKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHN-DDLYGKV 148
Query: 187 EKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
V + L+ C + VG V M + + ++ ++N ++ + W NV S +K
Sbjct: 149 TDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVK 207
>3iz5_A 60S ribosomal protein L1 (L1P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_A
Length = 216
Score = 62.8 bits (153), Expect = 1e-11
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 138 RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYL 197
+KL Y FLA + ++ +P+LLG K K P V ++ + ++ + + L
Sbjct: 100 KKLAKKYHAFLASEAIIKQIPRLLGPGLNKAGKFPTLV-SHQESLEAKVNETKATVKFQL 158
Query: 198 RTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
+ C + VG +SM + I +N+ ++N + ++ + W NVR ++K
Sbjct: 159 KKVLCMGVAVGNLSMDEKQIQQNIQMSVNFLVSLLKKNWQNVRCLYVK 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 1e-08
Identities = 56/331 (16%), Positives = 105/331 (31%), Gaps = 101/331 (30%)
Query: 38 NSQTQKPQLLEQ--DDFVYLILTLKKIPQVSRTNAFKIPLPHSL---LGNDSDNPP---- 88
+ Q Q+L +F L I H+L L ++D
Sbjct: 75 SKVGQFDQVLNLCLTEFENCYLEGNDI--------------HALAAKLLQENDTTLVKTK 120
Query: 89 EIC------LIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKI------TKLKTDYRPFEA 136
E+ IM RP + A+ + + N +++ I T DY FE
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGGQGNT---DDY--FEE 172
Query: 137 KRKLCDSYDIFLAD--KRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSAL 194
R L +Y + + D K L +L+ +K +++ W E
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL--EWLENPSNTPDKD- 229
Query: 195 LYLRT--------G---------TCSVL-----KVGKVSMGAEDIAENVIAAINGVAEIV 232
YL + G T +L ++ GA ++ ++ A+ +AE
Sbjct: 230 -YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV-AIAE-- 285
Query: 233 PRKWGNVRSFH------LKLLESLALPVYQAVPDLKLKIEGVKENE--GEGQ-------- 276
W SF + +L + + Y+A P+ L ++++ EG
Sbjct: 286 TDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 277 --DKDSEKENAEDVNDHGSKKKLKKKKGRIH 305
++ ++ N H K ++
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGK------QVE 367
Score = 51.2 bits (122), Expect = 6e-07
Identities = 58/278 (20%), Positives = 86/278 (30%), Gaps = 117/278 (42%)
Query: 5 VAPPLSLPPSA---------G--------SRVSPKTVERAVKALLKWLKSNSQTQ----- 42
P SLPPS G S ++ + V+ V L + Q +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 43 KPQLLEQDDFV--------Y-LILTLKKIPQVSRTNAFKIP------------LP----- 76
+ V Y L LTL+K S + +IP LP
Sbjct: 373 GA-----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 77 HS-LLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFE 135
HS LL SD LI D K+N++ +A +I P+ Y F+
Sbjct: 428 HSHLLVPASD------LINKDLVKNNVSFNAKDIQI-----PV------------YDTFD 464
Query: 136 AK--RKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEK----- 188
R L S +R+V + I +PV W+ +
Sbjct: 465 GSDLRVLSGS-----ISERIVDCI-------------IRLPVK-----WETTTQFKATHI 501
Query: 189 -VCG----SALLYL----RTGT-CSVLKVGKVSMGAED 216
G S L L + GT V+ G + + +D
Sbjct: 502 LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 46.6 bits (110), Expect = 1e-05
Identities = 45/248 (18%), Positives = 79/248 (31%), Gaps = 95/248 (38%)
Query: 22 KTVERAVKALLKWLKSNSQTQKPQL-LEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLL 80
+V +A+ L ++ P L I + S N +P P +L
Sbjct: 294 VSVRKAITVLF-FIGVRCYEAYPNTSLPP-----------SILEDSLENNEGVPSP--ML 339
Query: 81 GNDSDNPPEICLIMDDRPKSNLTKDAVMKKIK--NDNLPITKVIKITKLKTDYRPFEAKR 138
I SNLT++ V + N +LP K ++I+
Sbjct: 340 S-----------I------SNLTQEQVQDYVNKTNSHLPAGKQVEIS------------- 369
Query: 139 KLCDSYDIFLADKRVV--PLLPK-LLG-KHFFKKKKIPVPVDLKHQNWKEQI----EKVC 190
L + VV P P+ L G +K K P +D Q+ +I K+
Sbjct: 370 -LVNGAKNL-----VVSGP--PQSLYGLNLTLRKAKAPSGLD---QS---RIPFSERKLK 415
Query: 191 GSALLYLRTGT---CSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLL 247
S +L + +L + +D+ +N ++ N
Sbjct: 416 FS-NRFLPVASPFHSHLLV-PASDLINKDLVKNNVS-FNA-------------------- 452
Query: 248 ESLALPVY 255
+ + +PVY
Sbjct: 453 KDIQIPVY 460
Score = 40.0 bits (93), Expect = 0.001
Identities = 56/330 (16%), Positives = 95/330 (28%), Gaps = 145/330 (43%)
Query: 131 YRPFEAKRKLCDSYDIFLADK------RVVPLLPKLLGKHF--FKKKKIPVPVDLKHQNW 182
Y+ +A + + + D D +V P L HF K K+I +N+
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-------RENY 1688
Query: 183 KEQIEKVCGSALLY--LRTGTCSVLKVGKVSMGAEDIAENV------------------- 221
SA+++ + G K+ K +I E+
Sbjct: 1689 ---------SAMIFETIVDGKLKTEKIFK------EINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 222 --IAAINGVA--EIVPRKWGNVRS---F--HLKLLESL----ALPVYQA-VPDLKLKIE- 266
+ + A E + + G + + F H SL AL A V + IE
Sbjct: 1734 PALTLM-EKAAFEDL-KSKGLIPADATFAGH-----SLGEYAAL-ASLADV----MSIES 1781
Query: 267 GVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSD 326
V+ + +G T+ + DELG
Sbjct: 1782 LVE---------------------------VVFYRGM---------TMQVAVPRDELGRS 1805
Query: 327 DDG-----EGDVGESEDGEDSED-----GKMSSGDIL---------------GKKRKKGD 361
+ G G V S E + GK +G ++ G R
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGK-RTGWLVEIVNYNVENQQYVAAGDLR---A 1861
Query: 362 KERAQKLPK--KVAKVKKDELSSDMKNEDV 389
+ + K+ K+ EL + E+V
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 39.3 bits (91), Expect = 0.003
Identities = 38/268 (14%), Positives = 74/268 (27%), Gaps = 109/268 (40%)
Query: 78 SLLGNDSDNPPEICLIMDDRPKSNLTKDAVMK---KIKNDNLPITKVI--KITKLKTDYR 132
S+L +NP + I K ++ + D T+ I +I + T Y
Sbjct: 1660 SILDIVINNPVNL-TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY- 1717
Query: 133 PFEAKRKLCD------------SYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQ 180
F +++ L F + L K K +P D
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAF-----------EDL------KSKGLIPAD---- 1756
Query: 181 NWKEQIEKVCG------SAL---------------LYLR--------------TGTCSVL 205
G +AL ++ R ++
Sbjct: 1757 ------ATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 206 KVGKVSMGA-------EDIAENVIAAINGVAEIVPRKWGN--------VRSFHLKLLESL 250
+ + A + + E V + EIV N V + L+ L+++
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-----NYNVENQQYVAAGDLRALDTV 1865
Query: 251 ALPV----YQAVPDLKLK----IEGVKE 270
+ Q + ++L+ +E V+
Sbjct: 1866 TNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 212
Score = 52.0 bits (125), Expect = 6e-08
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 127 LKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQI 186
L+ +A + L D D F+A+K ++ + + LG + K+P P+D + E I
Sbjct: 85 LEELGGDDDAAKDLADDTDFFIAEKGLMQDIGRYLGTVLGPRGKMPEPLDPD-DDVVEVI 143
Query: 187 EKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
E++ + L +VG M AE+IA+N+ + + + + N+ + ++K
Sbjct: 144 ERMKNTVQLRSGERRTFHTRVGAEDMSAENIADNIDVILRRLHADLEKGPLNIDTVYVK 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 2e-07
Identities = 71/465 (15%), Positives = 127/465 (27%), Gaps = 149/465 (32%)
Query: 57 LTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNL 116
K I V +AF ++ D C + D PKS L+K + I
Sbjct: 16 YQYKDILSVFE-DAFV---------DNFD-----CKDVQDMPKSILSK-EEIDHIIMSKD 59
Query: 117 PITKVIKI-----TKLKTDYRPFEAKRKLCDSYDIFLADK-RVVPLLPKLLGKHFFKKKK 170
++ +++ +K + + F + L +Y FL + P ++ + + +++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 171 IP---VPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLK----VGKVSMGAEDIAENVIA 223
V K+ + Q ALL LR ++ GK + + +
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 224 AI--NGVAEIVPRKW---GNVRSFH--LKLLESLALPVYQAVPDLKLKIEGVKENEGEGQ 276
+ W N S L++L+ L +YQ P+ + +
Sbjct: 178 CKMDFKIF------WLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDH--------- 219
Query: 277 DKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDE---------------- 320
+ K + ++L K K Y + + VL
Sbjct: 220 -SSNIKLRIHSIQAE--LRRLLKSK------PYENCLL--VLLNVQNAKAWNAFNLSCKI 268
Query: 321 ----------DELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPK 370
D L + + ++ K +L K R Q LP+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLD----CRPQDLPR 320
Query: 371 KVAKVKKDELS------SDMKN-----EDVGKQKKQKKVGLSLKN--------------- 404
+V LS D + V K + SL
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 405 ----------------------DEEKSSGKEKKKSMLGKVKKEKK 427
D K K S++ K KE
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Score = 43.3 bits (101), Expect = 1e-04
Identities = 46/289 (15%), Positives = 84/289 (29%), Gaps = 78/289 (26%)
Query: 34 WLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDS----DNPPE 89
WL + +LE + + + ++ K+ + HS+ P E
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYE 244
Query: 90 ICL-IMDD--RPKS----NL-------TKDA-VMKKIKNDNLPITKVIKITKLKTDYRPF 134
CL ++ + K+ NL T+ V + T I + P
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSMTLTPD 301
Query: 135 EAKRKL-----CDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKH-QNWK----E 184
E K L C D+ P ++ + + L NWK +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--------IRDGLATWDNWKHVNCD 353
Query: 185 QIEKVCGSALLYLRTGT-------CSVLKVGKVSMGAED--IAENVIAAINGVAEIVPRK 235
++ + S+L L SV I +++ I
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFP--------PSAHIPTILLSLI---------- 395
Query: 236 WGN---------VRSFHLK-LLESLALPVYQAVPDLKLKIEGVKENEGE 274
W + V H L+E ++P + L+++ ENE
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Score = 42.5 bits (99), Expect = 3e-04
Identities = 42/373 (11%), Positives = 99/373 (26%), Gaps = 115/373 (30%)
Query: 16 GSRVSPKTVERA--VKALLKWLKSNSQTQKPQLLEQDDFVYL---------ILTLKKIPQ 64
+ V R L + L L V + + L
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLE---------LRPAKNVLIDGVLGSGKTWVAL----D 169
Query: 65 VSRTNAFKIPLPHSL----LGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITK 120
V + + + + L N + PE L M + + + + + N+ +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-- 225
Query: 121 VIKITKLKTDYRPFEAKRKLCDSYDIF--LADKRVVPLLPKLLGKHF------------- 165
+I ++ + R + + + + + + F
Sbjct: 226 --RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--------NAFNLSCKILLTTRFK 275
Query: 166 ----FKKKKIPVPVDLKHQNW---KEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIA 218
F + L H + ++++ + L +D+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----------------DCRPQDLP 319
Query: 219 ENVIA----AINGVAEIV---PRKWGNVRSFHL-KLLESLALPVYQAVPDL------KLK 264
V+ ++ +AE + W N + + KL + + P +L
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 265 I--EGVKENEGEGQDK-------DSEKENAEDVNDHGSKKKLKKKKG-----RIHEVRYM 310
+ D K + V + K L +K+ I + Y+
Sbjct: 380 VFPPSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YL 433
Query: 311 DSTIGEVLDEDEL 323
+ + ++ +E L
Sbjct: 434 ELKV-KLENEYAL 445
Score = 42.5 bits (99), Expect = 3e-04
Identities = 51/337 (15%), Positives = 108/337 (32%), Gaps = 77/337 (22%)
Query: 22 KTVERAVKALLK----WLKSNSQTQKPQ-LLEQDDFVYLILTLKKIPQ------VSRTNA 70
+ V++ V+ +L+ +L S +T++ Q + ++ L Q VSR
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 71 FKIPLPHSLLGNDSDNPPEICLI--MDDRPKSNLTKDAVMKKIKNDNLPITKV--IKITK 126
+ L +LL P + LI + K+ + D + + K+ + +
Sbjct: 137 YL-KLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKN 191
Query: 127 LKTDYRPFEAKRKLC---DSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWK 183
+ E +KL D +D L + ++ LK + ++
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------LKSKPYE 244
Query: 184 EQIEKVCGSALLYLR-----------TGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIV 232
LL L +C +L ++ + + + + AA +
Sbjct: 245 N--------CLLVLLNVQNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLD 292
Query: 233 PRKWGNVRSFHLKLLESLA------LPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAE 286
LL LP + + ++ + E+ +D + +N +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESI---RDGLATWDNWK 348
Query: 287 DVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDEL 323
VN KL ++S++ VL+ E
Sbjct: 349 HVN----CDKLTTI---------IESSL-NVLEPAEY 371
Score = 40.6 bits (94), Expect = 0.001
Identities = 44/264 (16%), Positives = 79/264 (29%), Gaps = 87/264 (32%)
Query: 1 MVTT--------VAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDF 52
++TT ++ + S T + LLK+L +PQ L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-----CRPQDLP---- 319
Query: 53 VYLILTLKKIPQVSRTNAFKIPLPHSLLG-NDSDNPPEICLIMDDRPKSNLTKDAVMKKI 111
+V TN P S++ + D N K +
Sbjct: 320 ----------REVLTTN----PRRLSIIAESIRDGL--------ATWD-NW------KHV 350
Query: 112 KNDNLPITKVIK--ITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKK 169
D L T +I+ + L+ P E RK+ D +F + LL
Sbjct: 351 NCDKL--TTIIESSLNVLE----PAE-YRKMFDRLSVFPPS---AHIPTILLSL------ 394
Query: 170 KIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVA 229
+ W + I+ + L K S+ + E+ I +I +
Sbjct: 395 -------I----WFDVIKSDVMVVVNKLH----------KYSLVEKQPKESTI-SIPSIY 432
Query: 230 EIVPRKWGNVRSFHLKLLESLALP 253
+ K N + H +++ +P
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIP 456
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein,
translation repressor, ribosome; 1.85A
{Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB:
1cjs_A 1u63_A 1dwu_A
Length = 219
Score = 50.1 bits (120), Expect = 3e-07
Identities = 25/123 (20%), Positives = 58/123 (47%), Gaps = 9/123 (7%)
Query: 127 LKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP----VDLKHQNW 182
++ + RK+ ++D F+A ++PL+ + +G + K+P P ++K
Sbjct: 85 IEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIK---- 140
Query: 183 KEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSF 242
+E++ + ++ R + VG M E I +N+ A +N VA+ + +++
Sbjct: 141 -PLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDA 199
Query: 243 HLK 245
++K
Sbjct: 200 YVK 202
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A
{Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5
1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Length = 217
Score = 47.7 bits (114), Expect = 1e-06
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 13/126 (10%)
Query: 124 ITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVP----VDLKH 179
+ KL+ RP + KL + FL ++ + L ++LG + K P P D+
Sbjct: 90 LQKLQGQKRPVK---KLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLPNTADIS- 145
Query: 180 QNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNV 239
E I + S L+ + + +G M ED+AEN IA +N + N+
Sbjct: 146 ----EYINRFKRSVLVKTKDQPQVQVFIGTEDMKPEDLAENAIAVLNAIENKAK-VETNL 200
Query: 240 RSFHLK 245
R+ ++K
Sbjct: 201 RNIYVK 206
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 39.9 bits (93), Expect = 0.001
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 269 KENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDSTIGEVLDEDELGSDDD 328
+ D D +E A + +KKK +KKK + + + +
Sbjct: 11 GSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDK--ESGASVDEVA 68
Query: 329 GEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKK 371
+ + ED E ED + GD G KK K++ ++ PK
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 31.4 bits (71), Expect = 0.59
Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 314 IGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVA 373
+ V + GS +G+ D + E+G S + + KK+ KG ++ P K +
Sbjct: 1 MAGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60
Query: 374 KVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
DE++ ++ + +++ + +++ G KK+KKK
Sbjct: 61 GASVDEVARQLERSALEDKERDED------DEDGDGDGDGATG------KKKKKK 103
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 32.0 bits (72), Expect = 0.36
Identities = 13/108 (12%), Positives = 39/108 (36%)
Query: 310 MDSTIGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLP 369
+ + E + E+E+ G +S + G K+KK +++ ++
Sbjct: 9 VKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKG 68
Query: 370 KKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKS 417
+ + + + + ++ ++ S+ K+ + K+S
Sbjct: 69 SETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRS 116
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.69
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 19/48 (39%)
Query: 183 KEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAE 230
K+ ++K+ S LY A+D A + AI E
Sbjct: 19 KQALKKLQASLKLY-----------------ADDSAPAL--AIKATME 47
Score = 27.6 bits (60), Expect = 4.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 244 LKLLE-SLALPVYQAVPDLKLK--IE 266
LK L+ SL L + P L +K +E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 29.9 bits (66), Expect = 1.7
Identities = 5/65 (7%), Positives = 20/65 (30%)
Query: 315 GEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQKLPKKVAK 374
G +++ + D + SE+ + + ++ + E ++
Sbjct: 291 GIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENSNVDTNEYDDNEEEEEGA 350
Query: 375 VKKDE 379
++
Sbjct: 351 KSNED 355
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 29.9 bits (66), Expect = 1.7
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 307 VRYMDSTIGEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKE 363
V + E E++ D+ E + + + G + +DG+ + R + E
Sbjct: 357 VDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPE 413
Score = 27.6 bits (60), Expect = 9.2
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 315 GEVLDEDELGSDDDGEGDVGESEDGEDSEDGKMSSGDILGKKRKKGDKERAQ 366
G L+ + +++ + D + E+ +D + G E+A
Sbjct: 362 GAALEFEFEEDEEEADED-EDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAP 412
>2ftc_A Mitochondrial ribosomal protein L1; mitochondrial ribosome, large
ribosomal subunit, ribosomal R ribosome; 12.10A {Bos
taurus}
Length = 189
Score = 29.1 bits (66), Expect = 1.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 206 KVGKVSMGAEDIAENVIAAINGVAEIVP 233
K+ + M ++ IA N+ A IN V P
Sbjct: 134 KIATLDMSSDQIAANLQAVINEVCRHRP 161
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 29.3 bits (66), Expect = 2.5
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 231 IVPRKWGNVRSFHLKLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVND 290
+ + + E + P+ A PD++ + + + + S + AE
Sbjct: 251 VASAPY-----HAMYRPEDMPAPIRAANPDIEAAQHPLMKFYVDSIRRGSFFQGAEGSGA 305
Query: 291 HGSKKKLKK-KKGRIHEVRYMDSTIGEVLDE-DELGSDDD 328
+ +L++ + + +D +G V DE G DD
Sbjct: 306 TLDEAELRQMRATYCGLITEVDDCLGRVFSYLDETGQWDD 345
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease,
hydrolase, endonuclease; 1.50A {Enterobacteria phage T4}
PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Length = 305
Score = 28.6 bits (63), Expect = 4.7
Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 44 PQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMD--DRPKSN 101
QL + + KK ++ +A + L G+ DN + + D
Sbjct: 159 TQLHKYPNVKQWSPMHKKWVKIKSGSAEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEG 218
Query: 102 LTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCD 142
++ I + K+ +++Y ++ L D
Sbjct: 219 ERTPSMKTSIVEAIANDREQAKVLLTESEYNRYKENLVLID 259
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 28.1 bits (63), Expect = 6.7
Identities = 4/23 (17%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 307 VRYMDSTIGEVLDE-DELGSDDD 328
+ +D+ +G ++ +LG ++
Sbjct: 233 LMELDAAVGTLMTAIGDLGLLEE 255
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA;
HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP:
b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 26.1 bits (57), Expect = 7.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 315 GEVLDEDELGSDDDGEGDVGESEDGEDSED 344
+LD DE+GS+ D D +GE+
Sbjct: 3 SALLDTDEVGSELDDSDDDYLISEGEEDGP 32
>4f9t_A 50S ribosomal protein L1; rossman fold, RNA; HET: MPD; 1.46A
{Thermus thermophilus} PDB: 3u4m_A 1eg0_N 1vsp_A 2hgj_C
2hgq_C 2hgu_C 1vsa_A 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C
1giy_C 2hw8_A 2j01_C 2j03_C 2jl6_C 2jl8_C 2om7_K* 2v47_C
...
Length = 229
Score = 27.3 bits (61), Expect = 8.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 207 VGKVSMGAEDIAENVIAAINGVAEIVP 233
VGK S E +A+N+ A I + P
Sbjct: 176 VGKASFPPEKLADNIRAFIRALEAHKP 202
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 27.3 bits (61), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 207 VGKVSMGAEDIAENVIAAINGVAEIVP 233
VGK+S E + +N+ AAI+ V P
Sbjct: 179 VGKISFEKEKLIDNLYAAIDAVVRAKP 205
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A
2vpl_A
Length = 137
Score = 26.5 bits (59), Expect = 9.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 206 KVGKVSMGAEDIAENVIAAINGVAEIVP 233
VGK S E +A+N+ A I + P
Sbjct: 83 PVGKASFPPEKLADNIRAFIRALEAHKP 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.132 0.364
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,358,582
Number of extensions: 393862
Number of successful extensions: 997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 70
Length of query: 431
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 335
Effective length of database: 4,021,377
Effective search space: 1347161295
Effective search space used: 1347161295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.5 bits)