RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 014066
         (431 letters)



>d1mzpa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Sulfolobus
           acidocaldarius [TaxId: 2285]}
          Length = 217

 Score = 62.4 bits (151), Expect = 6e-12
 Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 27/229 (11%)

Query: 19  VSPKTVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFK--IPLP 76
              +++  A+K       S     K    +    V +ILT K I         +  +PLP
Sbjct: 3   ADKESLIEALKLA----LSTEYNVKRNFTQS---VEIILTFKGIDMKKGDLKLREIVPLP 55

Query: 77  HSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEA 136
                    +  +  L++    +    K A  K +               L+        
Sbjct: 56  KQP------SKAKRVLVVPSSEQLEYAKKASPKVVITREE----------LQKLQGQKRP 99

Query: 137 KRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLY 196
            +KL    + FL ++  + L  ++LG     + K P P+     +  E I +   S L+ 
Sbjct: 100 VKKLARQNEWFLINQESMALAGRILGPALGPRGKFPTPLP-NTADISEYINRFKRSVLVK 158

Query: 197 LRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLK 245
            +      + +G   M  ED+AEN IA +N + E   +   N+R+ ++K
Sbjct: 159 TKDQPQVQVFIGTEDMKPEDLAENAIAVLNAI-ENKAKVETNLRNIYVK 206


>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
           jannaschii [TaxId: 2190]}
          Length = 212

 Score = 57.1 bits (137), Expect = 4e-10
 Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 20/198 (10%)

Query: 50  DDFVYLILTLKKIPQVSRTNAFK--IPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAV 107
                 I TLK+I      N  K  + LPH               ++     +   ++  
Sbjct: 23  TQSFEFIATLKEIDMRKPENRIKTEVVLPHGR------GKEAKIAVIGTGDLAKQAEELG 76

Query: 108 MKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFK 167
           +  I+ +      + ++ K K   R      K+  ++D F+A   ++PL+ + +G     
Sbjct: 77  LTVIRKEE-----IEELGKNKRKLR------KIAKAHDFFIAQADLMPLIGRYMGVILGP 125

Query: 168 KKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAING 227
           + K+P PV   + N K  +E++  + ++  R      + VG   M  E I +N+ A +N 
Sbjct: 126 RGKMPKPVP-ANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNV 184

Query: 228 VAEIVPRKWGNVRSFHLK 245
           VA+   +   +++  ++K
Sbjct: 185 VAKKYEKGLYHIKDAYVK 202


>d1ad2a_ e.24.1.1 (A:) Ribosomal protein L1 {Thermus thermophilus
           [TaxId: 274]}
          Length = 224

 Score = 32.3 bits (73), Expect = 0.077
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 4/118 (3%)

Query: 132 RPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCG 191
              +        +D  +A   V+  +   LG+    +  +P P          +I +   
Sbjct: 94  EIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIK 153

Query: 192 SALLYLRTGTCSVL--KVGKVSMGAEDIAENVIAAINGVAEIVPRKWGN--VRSFHLK 245
           +  +  R      +   VGK     E +A+N+ A I  +    P       +RS ++ 
Sbjct: 154 AGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVT 211


>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 150

 Score = 27.9 bits (62), Expect = 1.5
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 369 PKKVAKVKKDELSSDMKNEDVGKQKKQKKVGLSLKNDEEKSSGKEKKKSMLGKVKKEKKK 428
              V+   K  ++   K +D+       K+  +++N E  SS  E     +   K  K  
Sbjct: 76  SAVVSSNIKKIVADLKKGKDLSPAINYTKLKNAVQN-ESVSSPIELNFDAVKDFKLGKFN 134

Query: 429 LVA 431
            VA
Sbjct: 135 YVA 137


>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 149

 Score = 26.3 bits (58), Expect = 5.2
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 5  VAPPLSLPPSAGSRVSPKTVERAVKALLKWLKSNSQTQKPQLLE--QDDFVYLILTL 59
          V+  LS     G    P   E     L  +++ +    + +L +     FV++ L L
Sbjct: 4  VSAVLSAYNQQGD---PTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLEL 57


>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
           (G) domain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 341

 Score = 26.6 bits (58), Expect = 6.4
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 15/105 (14%)

Query: 98  PKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLC--------DSYDIFLA 149
            K  + K  +M ++  D+    K  K T   TD      +R             +   + 
Sbjct: 229 KKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMN 288

Query: 150 DKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSAL 194
            K     +P LL     +K +I +  D K    K  ++ V    L
Sbjct: 289 FK--KDEIPVLL-----EKLEIVLKGDEKDLEGKALLKVVMRKFL 326


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,550,515
Number of extensions: 76249
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 15
Length of query: 431
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 343
Effective length of database: 1,199,356
Effective search space: 411379108
Effective search space used: 411379108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.8 bits)