Query 014067
Match_columns 431
No_of_seqs 187 out of 1437
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:54:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 2.6E-22 9E-27 206.3 12.7 384 2-428 112-510 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 1.6E-19 5.6E-24 183.8 22.9 349 2-427 111-478 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.5 8.7E-13 3E-17 131.9 16.1 308 2-423 122-436 (451)
4 3o7q_A L-fucose-proton symport 99.2 4.3E-10 1.5E-14 111.9 19.8 83 2-90 120-228 (438)
5 2gfp_A EMRD, multidrug resista 99.1 7.7E-11 2.6E-15 115.2 6.7 79 2-86 91-169 (375)
6 2cfq_A Lactose permease; trans 98.7 1.2E-08 4E-13 101.6 5.8 139 236-423 263-402 (417)
7 4gc0_A D-xylose-proton symport 98.6 4.5E-07 1.5E-11 91.4 15.7 77 2-84 129-213 (491)
8 1pw4_A Glycerol-3-phosphate tr 98.4 5.5E-06 1.9E-10 82.2 15.0 145 235-423 65-209 (451)
9 3o7q_A L-fucose-proton symport 98.3 7.4E-06 2.5E-10 81.0 13.7 114 235-377 64-177 (438)
10 4aps_A DI-OR tripeptide H+ sym 98.2 1.9E-05 6.4E-10 79.5 13.7 142 235-425 57-201 (491)
11 2xut_A Proton/peptide symporte 98.0 3.3E-05 1.1E-09 78.4 11.4 142 236-424 58-202 (524)
12 2gfp_A EMRD, multidrug resista 97.8 1.3E-05 4.5E-10 77.7 5.5 111 235-377 38-148 (375)
13 4gc0_A D-xylose-proton symport 97.1 0.0046 1.6E-07 61.7 13.4 121 239-377 62-186 (491)
14 2cfq_A Lactose permease; trans 95.0 0.0058 2E-07 60.1 0.9 76 9-90 322-398 (417)
15 2ks1_B Epidermal growth factor 28.6 58 0.002 20.6 3.2 20 409-428 24-43 (44)
16 2l2t_A Receptor tyrosine-prote 23.8 82 0.0028 19.9 3.2 17 411-427 25-41 (44)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.87 E-value=2.6e-22 Score=206.32 Aligned_cols=384 Identities=19% Similarity=0.296 Sum_probs=229.3
Q ss_pred hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067 2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI 81 (431)
Q Consensus 2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~ 81 (431)
+++++++.++|.|...|+..++++|++++++ |.+..+.|++++.+.|+|.+++|.+++++.++.||+..|.+.++..
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~ 188 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4677888999999999999999999998653 3345678999999999999999999999998899999999999998
Q ss_pred HHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCC-Cc-ccccC----CCCCCCCCCCcc-cccccccCCC
Q 014067 82 LLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNS-SN-AVTEV----HSSPTCSNESRD-EGNSNVKEKV 154 (431)
Q Consensus 82 ~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~-~~-~~~~~----~~~l~~~~~~~~-~~a~~~~~~~ 154 (431)
+++.++++..++++.+++|++++..+..+.+..+.+++....+. .. ..... .....+...... .....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 263 (524)
T 2xut_A 189 FVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCC----- 263 (524)
T ss_dssp HHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHH-----
T ss_pred HHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhh-----
Confidence 88877776665555433333333222222222222211100000 00 00000 000000000000 00000
Q ss_pred CCCCCchhHHHHhhhccCCCCCCc-------cccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHHhccCC
Q 014067 155 PSQKPTEDIKFLNRALRNNPAYPI-------VQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKL 227 (431)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~ 227 (431)
..+...... ...+| ...+..+.+++|+..+.+++++....++..+.|..+.+..+..+++.+.
T Consensus 264 --------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (524)
T 2xut_A 264 --------AMVLVMGFV--GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ 333 (524)
T ss_dssp --------HHHHHHHHH--HTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS
T ss_pred --------hhhhhhccc--ccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe
Confidence 000000000 00111 0011122345666777778888888888888888877776666665432
Q ss_pred CCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 014067 228 GSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLV 307 (431)
Q Consensus 228 gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~ 307 (431)
+ ++.+.+..++++..++..|+.+++..|..+|++++ .++.+++.+|+++.+++++.+++.+..+
T Consensus 334 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------- 397 (524)
T 2xut_A 334 --W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMM---------- 397 (524)
T ss_dssp --S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----------
T ss_pred --e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 1 35667788888899999999999877766664333 5667788899999888887766543110
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCC
Q 014067 308 NSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTP 387 (431)
Q Consensus 308 ~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~ 387 (431)
+.....+.+|+++.+++.++++.+..|...+++.+.+|+++||.++|+++...++|+.+++.+.+.+...+. .+
T Consensus 398 --~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~ 471 (524)
T 2xut_A 398 --DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TE 471 (524)
T ss_dssp --TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HH
T ss_pred --cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cc
Confidence 001235788999999999999999999999999999999999999999999999999999999887753221 12
Q ss_pred CCcCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014067 388 WLFGS-NLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYSS 428 (431)
Q Consensus 388 w~~~~-~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~~ 428 (431)
|. ++ +++.. .+.|++.+++++++.++++++.+++++++
T Consensus 472 ~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 472 QI-VQTGMSVT--AFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp HH-HHHHSCHH--HHHHHHHHHHHHHHHHHHC----------
T ss_pred cc-cccccccc--ccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 32 11 11111 12277888888888888888887776543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=1.6e-19 Score=183.79 Aligned_cols=349 Identities=16% Similarity=0.241 Sum_probs=228.3
Q ss_pred hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067 2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI 81 (431)
Q Consensus 2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~ 81 (431)
+++++++.++|.|...|+..++++|++++++. +|..++++++.+.|+|..++|.+++++.++.||++.|.+.++..
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~ 186 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGM 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56788899999999999999999999986532 46778999999999999999999999999999999999999988
Q ss_pred HHHHHHHHhcCcceeec---CCCCC-chhHHHHHHHH-------------HHHhhcCCCCCCcccccCCCCCCCCCCCcc
Q 014067 82 LLSIPIFLLGSPFYRNK---IPTGS-PLTTIFKVLTA-------------AIFNTCKSKNSSNAVTEVHSSPTCSNESRD 144 (431)
Q Consensus 82 ~i~~iif~~~~~~~~~~---~p~~~-~~~~~~~v~~~-------------a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 144 (431)
+++++++++.++++..+ +|+.. ...+..+.... ...... ..++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~--------------------~~~~ 246 (491)
T 4aps_A 187 FIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG--------------------WNSL 246 (491)
T ss_dssp HHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHS--------------------SCCT
T ss_pred HHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhcc--------------------Cccc
Confidence 88877766554433221 12111 11111111100 000000 0000
Q ss_pred cc-cccccCCCCCCCCchhHHHHhhhccCCCCCCccccccchhhHHHHHHhHHHHHhhhHHHHHHhhcccchHHHHHHH-
Q 014067 145 EG-NSNVKEKVPSQKPTEDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVVKIFPIFMSTIMLNCCLAQLSTFSVQQAAT- 222 (431)
Q Consensus 145 ~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~- 222 (431)
+. ........ ......+... .++... ...+++++..+..++++....++..+.+..+.+..+..+
T Consensus 247 ~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (491)
T 4aps_A 247 PAYINLLTIVA----IAIPVFYFAW--------MISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER 313 (491)
T ss_dssp THHHHHHHHHH----HHHHHHHHHH--------HC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS
T ss_pred ccchhhhhHHH----HHHHHHHHHH--------Hhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 00 00000000 0000000000 000000 011345566667788888889999998888766554433
Q ss_pred hccCCCCcccCCCCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014067 223 MNTKLGSLKVPPASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAV 302 (431)
Q Consensus 223 ~~~~~gg~~ip~~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~ 302 (431)
.+.+ ..+.+.+..++++..++..|+.+++.+++.||. +...+++.+|+++.+++++.++......
T Consensus 314 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 378 (491)
T 4aps_A 314 VDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY----- 378 (491)
T ss_dssp CCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-----
T ss_pred hccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 3322 146788899999999999999999877665542 5667889999999999988877764210
Q ss_pred hcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 014067 303 NSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITST 382 (431)
Q Consensus 303 ~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~ 382 (431)
+ +..+.+.+|+++.+++.++++.+..|...+++.+..|++.||.++|+++....+|+.+++.+.+.+.+..
T Consensus 379 --~-----~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~-- 449 (491)
T 4aps_A 379 --G-----TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS-- 449 (491)
T ss_dssp --C-----CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--
T ss_pred --C-----CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 0 0124678899999999999999999999999999999999999999999999999999999987765211
Q ss_pred CCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014067 383 YRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYKYS 427 (431)
Q Consensus 383 ~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~~~ 427 (431)
....|+.+++++++..++.++..++.+++
T Consensus 450 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 450 ----------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp ----------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12457778888888888777777766543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.46 E-value=8.7e-13 Score=131.95 Aligned_cols=308 Identities=9% Similarity=-0.014 Sum_probs=176.4
Q ss_pred hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccC-chhHHHHHHHH
Q 014067 2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKG-WQWGFGISTAT 80 (431)
Q Consensus 2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g-~~~~F~i~~i~ 80 (431)
++++.++.++|.|...|...++++|.++++ +|.++++++..+.++|.+++|.+++++.+..| |+..|.+.++.
T Consensus 122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~ 195 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 195 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 467788899999999999999999999754 46789999999999999999999999888888 99999999887
Q ss_pred HHHHHHHHHhcCcceeecCCCCCchhHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCCcccccccccCCCCCCCCc
Q 014067 81 ILLSIPIFLLGSPFYRNKIPTGSPLTTIFKVLTAAIFNTCKSKNSSNAVTEVHSSPTCSNESRDEGNSNVKEKVPSQKPT 160 (431)
Q Consensus 81 ~~i~~iif~~~~~~~~~~~p~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~ 160 (431)
.++..++.++..+. +|+..... ..+. ...... .+. +..
T Consensus 196 ~~~~~~~~~~~~~~----~~~~~~~~---------------~~~~----------~~~~~~--~~~-----~~~------ 233 (451)
T 1pw4_A 196 AILVALFAFAMMRD----TPQSCGLP---------------PIEE----------YKNDYP--DDY-----NEK------ 233 (451)
T ss_dssp HHHHHHHHHHHCCC----SSTTTCCC---------------SCTT----------TCCC---------------------
T ss_pred HHHHHHHHHhhccC----CHhhcCCC---------------Chhh----------hccccc--ccc-----hhh------
Confidence 77665544333221 11110000 0000 000000 000 000
Q ss_pred hhHHHHhhhccCCCCCCccccccchhhHHHHHH---hHHHHHhhhHHHHHHhhcccchHHHHHHHhccCCCCcc-cCCCC
Q 014067 161 EDIKFLNRALRNNPAYPIVQCTVKEVEEVKIVV---KIFPIFMSTIMLNCCLAQLSTFSVQQAATMNTKLGSLK-VPPAS 236 (431)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~f~~~~~Q~~t~~~~~~~~~~~~~gg~~-ip~~~ 236 (431)
++ ....+ .+.- .+..+ .+..+.+...+.+..+....+.+. ..+....| .. ...+.
T Consensus 234 ----------~~-~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-~~~~~~~~ 292 (451)
T 1pw4_A 234 ----------AE-QELTA-----KQIF-MQYVLPNKLLWYIAIANVFVYLLRYGILDWSP---TYLKEVKH-FALDKSSW 292 (451)
T ss_dssp ----------------CC-----THHH-HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHH---HHBTTBSC-CCHHHHHH
T ss_pred ----------hh-ccccc-----ccch-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcC-CCHHHHHH
Confidence 00 00000 0000 01111 122222222222222222221111 22222222 10 01234
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067 237 LPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSI-VAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 315 (431)
Q Consensus 237 l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 315 (431)
+.+...+..++..++..++.+++.+ ...+.+.++.++.+ ++++...+. ...
T Consensus 293 ~~~~~~~~~~~~~~~~g~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 344 (451)
T 1pw4_A 293 AYFLYEYAGIPGTLLCGWMSDKVFR---------GNRGATGVFFMTLVTIATIVYWMN-------------------PAG 344 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTST---------TCHHHHHHHHHHHHHHHHHHTTSC-------------------CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---------CCchhHHHHHHHHHHHHHHHHHHh-------------------ccc
Confidence 4555566666666666665443210 11122334444433 333332221 013
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHH-HHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067 316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAM-GYYFSTVLVSIVNNITSTYRHTPWLFGSNL 394 (431)
Q Consensus 316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~i-G~~l~~~l~~~~~~~~~~~~~~~w~~~~~~ 394 (431)
+.++.+...++.+++.....+....++.+..|++.||.++|++.....+ |..+++.+.+.+.+.. +
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g------- 411 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G------- 411 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C-------
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C-------
Confidence 5566777778888888888888889999999999999999999999999 9999999988765321 1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067 395 NHYHLERFYWLMCILGGLNFLHFLFWAAR 423 (431)
Q Consensus 395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~ 423 (431)
....|++.+++.+++.+++++..++
T Consensus 412 ----~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 ----WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1245777777777777766665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.23 E-value=4.3e-10 Score=111.90 Aligned_cols=83 Identities=28% Similarity=0.307 Sum_probs=68.8
Q ss_pred hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcc-cccC-----------
Q 014067 2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIE-DNKG----------- 69 (431)
Q Consensus 2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~-~~~g----------- 69 (431)
+++++.+.++|.|...|...++++|.++++ +|...++++..+.++|.++++.+++++. +..+
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 193 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMS 193 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSC
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence 567888999999999999999999999765 3567899999999999999999999998 5554
Q ss_pred --------------chhHHHHHHHHHHHHHHHHHh
Q 014067 70 --------------WQWGFGISTATILLSIPIFLL 90 (431)
Q Consensus 70 --------------~~~~F~i~~i~~~i~~iif~~ 90 (431)
|++.|.+.++..++..+++++
T Consensus 194 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 194 PEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899998777766666554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.09 E-value=7.7e-11 Score=115.15 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=68.7
Q ss_pred hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067 2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATI 81 (431)
Q Consensus 2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~ 81 (431)
++++..+.++|.+...|...+++.|.++++ +|.+.++++..+.++|..++|.+++++.++.||+..|.+.++..
T Consensus 91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 91 LIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456778889999999999999999998654 36778999999999999999999999999899999999888877
Q ss_pred HHHHH
Q 014067 82 LLSIP 86 (431)
Q Consensus 82 ~i~~i 86 (431)
++..+
T Consensus 165 ~~~~~ 169 (375)
T 2gfp_A 165 AGVTF 169 (375)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.69 E-value=1.2e-08 Score=101.58 Aligned_cols=139 Identities=10% Similarity=0.027 Sum_probs=88.5
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067 236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 315 (431)
Q Consensus 236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 315 (431)
.+.+++.+..++..++..++.+++.+| +.+.+|.++.+++++..++. .
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~~~~~~---------------------~ 310 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA---------------------T 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHTTC---------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHHHHHHh---------------------c
Confidence 344555555566666666665544332 23455666665554443221 1
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHH-HHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067 316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL-SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 394 (431)
Q Consensus 316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~ 394 (431)
+.++++...++.+++.....+....++.+..|++.||..+|+ +....++|+.+++.+.+.+....
T Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-------------- 376 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------- 376 (417)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--------------
Confidence 344555555666776656666678899999999999999998 57778899999998887664211
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067 395 NHYHLERFYWLMCILGGLNFLHFLFWAAR 423 (431)
Q Consensus 395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~ 423 (431)
.....|.+.+++++++.++.++..|+
T Consensus 377 ---g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 377 ---GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 12234677777777777766555543
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.63 E-value=4.5e-07 Score=91.44 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=58.1
Q ss_pred hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhcccc--------cCchhH
Q 014067 2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIEDN--------KGWQWG 73 (431)
Q Consensus 2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~~--------~g~~~~ 73 (431)
+++++.+.++|.|+..+....+++|..+++ +|....+++..+..+|.++++.++..+... .+|+..
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM 202 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence 567889999999999999999999998754 466778888899999999988887665432 345666
Q ss_pred HHHHHHHHHHH
Q 014067 74 FGISTATILLS 84 (431)
Q Consensus 74 F~i~~i~~~i~ 84 (431)
+.+..+..++.
T Consensus 203 ~~~~~~~~~~~ 213 (491)
T 4gc0_A 203 FASECIPALLF 213 (491)
T ss_dssp HHTTHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 65555444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.36 E-value=5.5e-06 Score=82.18 Aligned_cols=145 Identities=11% Similarity=-0.048 Sum_probs=104.3
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067 235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 314 (431)
Q Consensus 235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 314 (431)
+++.++..+...+..|+.+++.++..+| +-+.+|.++.+++.+..++.... .
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~~-----------------~ 116 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhhhc-----------------c
Confidence 3456666677777778877766544333 34677888888888777662100 0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067 315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 394 (431)
Q Consensus 315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~ 394 (431)
.++++++...++.|++.....+...+++.+..|++.|+..+|++....++|..+++.+++.+....+ +|-
T Consensus 117 ~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w~----- 186 (451)
T 1pw4_A 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DWH----- 186 (451)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CST-----
T ss_pred ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHH-----
Confidence 2456788889999999999999999999999999999999999999999999999999876532110 143
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 014067 395 NHYHLERFYWLMCILGGLNFLHFLFWAAR 423 (431)
Q Consensus 395 n~~~l~~~f~~la~l~~v~~i~~~~~~~~ 423 (431)
..|++.+++.++..++..+..++
T Consensus 187 ------~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 187 ------AALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp ------TCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ------HHHHHHHHHHHHHHHHHHhhccC
Confidence 22666677766666555554443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.28 E-value=7.4e-06 Score=80.99 Aligned_cols=114 Identities=12% Similarity=0.034 Sum_probs=92.0
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067 235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 314 (431)
Q Consensus 235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 314 (431)
+++.+...+..++..|+.+++.+++.+| +-+.+|.++.+++.+..+.... .
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r-----------~~l~~~~~~~~~~~~~~~~~~~------------------~ 114 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYK-----------AGIITGLFLYALGAALFWPAAE------------------I 114 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHHHH------------------T
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHHhccc------------------c
Confidence 4556777777778888888876655443 3477888888888777644320 2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067 315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 377 (431)
Q Consensus 315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 377 (431)
.++++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999999999999999999999999987765
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.15 E-value=1.9e-05 Score=79.52 Aligned_cols=142 Identities=13% Similarity=0.065 Sum_probs=105.8
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 014067 235 ASLPVFPVIFILILAPVYNHVIIP-FARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPL 313 (431)
Q Consensus 235 ~~l~~~n~~~iil~~pl~~~~~~p-l~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 313 (431)
+++.+...+...+..|+.+++.++ +.|| +-+.+|.++.+++.+.+++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r-----------~~~~~~~~~~~~~~~~~~~~-------------------- 105 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGAR-----------PAVFWGGVLIMLGHIVLALP-------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHH-----------HHHHHHHHHHHHHHHHHHSC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHHHHHHh--------------------
Confidence 456777777888888888887766 4443 23667777777766655442
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchh--hhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcC
Q 014067 314 PITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSM--RSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFG 391 (431)
Q Consensus 314 ~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~--~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~ 391 (431)
.+.++++...++.|+++....|....++.+..|++. |+..++++....++|..+++.+++.+.... +|-
T Consensus 106 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g~~-- 176 (491)
T 4aps_A 106 -FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------GYH-- 176 (491)
T ss_dssp -CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------CHH--
T ss_pred -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------hHH--
Confidence 345677788899999999999999999999999988 888888899999999999999988775311 232
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067 392 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 425 (431)
Q Consensus 392 ~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~ 425 (431)
..|++.+++.+++.+++.+..+++.
T Consensus 177 ---------~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 177 ---------VAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhCcccc
Confidence 3466667777777777666666554
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.97 E-value=3.3e-05 Score=78.45 Aligned_cols=142 Identities=12% Similarity=0.045 Sum_probs=97.0
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcch
Q 014067 236 SLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPI 315 (431)
Q Consensus 236 ~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 315 (431)
++.+...+..++..|+.+++. +|. ....+-+.+|.++.+++.+..++. +.
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~----dr~------~g~r~~~~~~~~~~~~~~~~~~~~--------------------~~ 107 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIA----DRF------FGKYNTILWLSLIYCVGHAFLAIF--------------------EH 107 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH----TTS------SCSHHHHHHHHHHHHHHHHHHHHT--------------------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHH------hcchHHHHHHHHHHHHHHHHHHHh--------------------cc
Confidence 345555566666667766654 332 022234667777777776665543 12
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHH---HHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCC
Q 014067 316 TFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSL---SWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGS 392 (431)
Q Consensus 316 s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl---~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~ 392 (431)
+.++++...++.|+++....|...+++.+..|++.|+..+++ +....++|..+++.+++.+.... +|
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~---- 177 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA---- 177 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----
Confidence 567788889999999999999999999999999999877666 88888999999998877664211 22
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014067 393 NLNHYHLERFYWLMCILGGLNFLHFLFWAARY 424 (431)
Q Consensus 393 ~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~ 424 (431)
...|++.+++.++..+++.+..+++
T Consensus 178 -------~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 178 -------AVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2446666666666666555444433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.84 E-value=1.3e-05 Score=77.66 Aligned_cols=111 Identities=11% Similarity=-0.007 Sum_probs=87.6
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067 235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 314 (431)
Q Consensus 235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 314 (431)
+++.+...+...+..|+.+++.++..|| +-+.+|.++.+++.+..++.
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r-----------~~~~~~~~~~~~~~~~~~~~--------------------- 85 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRR-----------PVILVGMSIFMLATLVAVTT--------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCC-----------CCCHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCc-----------hhHHHHHHHHHHHHHHHHHh---------------------
Confidence 3456666777777777777765433222 23557777777777776664
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067 315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 377 (431)
Q Consensus 315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 377 (431)
.+.++++...++.+++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 256678888999999999999999999999999999999999999999999999999988764
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.11 E-value=0.0046 Score=61.75 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=83.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC----Ccc
Q 014067 239 VFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSE----PLP 314 (431)
Q Consensus 239 ~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~ 314 (431)
+.-.+..++..++.+++-+++.|| +-+.++.++..++-+..++... ......... ...
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk-----------~~l~~~~~l~~i~~i~~a~~~~-------~~~~~~~~~~~~~~~a 123 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRR-----------DSLKIAAVLFFISGVGSAWPEL-------GFTSINPDNTVPVYLA 123 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHH-----------HHHHHHHHHHHHHHHHHHCTTT-------TTSCSSSSSSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHHHHHHHHhh-------hhhhhcchhHHHHHHh
Confidence 333444555666666665555544 2356677777766666554320 000000000 012
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhc
Q 014067 315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVN 377 (431)
Q Consensus 315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~ 377 (431)
.+++.++...++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..+.....
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 467788999999999999999999999999999999999999999999999999888776654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=94.96 E-value=0.0058 Score=60.06 Aligned_cols=76 Identities=9% Similarity=0.025 Sum_probs=56.3
Q ss_pred HHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHhhhhhhcccccCchhHHHHHHHHHHHHHHH
Q 014067 9 VALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNY-YVFCLSCGALIAVTFVVWIEDNKGWQWGFGISTATILLSIPI 87 (431)
Q Consensus 9 i~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~~i~~ii 87 (431)
.+++.+.+.+...+...|.++++ .|..++.+ +..+.++|+.++|.++|++.++.|+...|.+.++..+++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 34444455555667777777532 35566777 456777999999999999998889999999988888888776
Q ss_pred HHh
Q 014067 88 FLL 90 (431)
Q Consensus 88 f~~ 90 (431)
.+.
T Consensus 396 ~~~ 398 (417)
T 2cfq_A 396 SVF 398 (417)
T ss_dssp HTT
T ss_pred HHh
Confidence 544
No 15
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.64 E-value=58 Score=20.59 Aligned_cols=20 Identities=20% Similarity=-0.064 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhcccccc
Q 014067 409 LGGLNFLHFLFWAARYKYSS 428 (431)
Q Consensus 409 l~~v~~i~~~~~~~~~~~~~ 428 (431)
+.++.+++++++.||-..++
T Consensus 24 ~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 24 LLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHHHhhhhHhhcc
Confidence 33444555555555544443
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=23.82 E-value=82 Score=19.91 Aligned_cols=17 Identities=0% Similarity=-0.080 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhccccc
Q 014067 411 GLNFLHFLFWAARYKYS 427 (431)
Q Consensus 411 ~v~~i~~~~~~~~~~~~ 427 (431)
++.+++++++.||-..+
T Consensus 25 ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHhhhhhhhh
Confidence 44455555555554443
Done!