Query 014067
Match_columns 431
No_of_seqs 187 out of 1437
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 04:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014067.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014067hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.3 1.3E-11 9.8E-16 120.2 17.6 83 2-90 119-202 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 98.9 5.6E-09 4.1E-13 98.9 13.9 114 274-425 290-404 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.4 2.9E-06 2.1E-10 81.3 17.1 144 235-422 62-205 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 96.5 0.00056 4.1E-08 63.2 3.6 83 3-91 316-399 (417)
5 d2qkwa1 a.8.8.1 (A:29-129) Avi 26.3 14 0.00099 24.6 1.6 25 338-362 25-49 (101)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 9.0 39 0.0029 23.1 0.4 26 403-428 22-47 (91)
7 d1r3jc_ f.14.1.1 (C:) Potassiu 6.7 3.5E+02 0.026 18.0 6.4 22 344-365 59-80 (103)
8 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.4 2.9E+02 0.021 14.2 2.9 15 72-86 17-31 (34)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.0 2.2E+02 0.016 17.4 2.0 34 392-425 31-64 (64)
10 d1v54d_ f.23.1.1 (D:) Mitochon 3.3 2.8E+02 0.02 20.4 2.2 31 70-100 75-105 (144)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.33 E-value=1.3e-11 Score=120.20 Aligned_cols=83 Identities=10% Similarity=0.091 Sum_probs=67.4
Q ss_pred hhHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhccc-ccCchhHHHHHHHH
Q 014067 2 LFAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVFCLSCGALIAVTFVVWIED-NKGWQWGFGISTAT 80 (431)
Q Consensus 2 ~~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~l~~-~~g~~~~F~i~~i~ 80 (431)
++++..+.++|.|...|...++++|.++++ +|..+++++..+.++|.++++.+++.+.. ..+|+..|.+.++.
T Consensus 119 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 119 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 456777889999999999999999999754 36778999999999999999998887655 35899999988887
Q ss_pred HHHHHHHHHh
Q 014067 81 ILLSIPIFLL 90 (431)
Q Consensus 81 ~~i~~iif~~ 90 (431)
.++..++.+.
T Consensus 193 ~~~~~~~~~~ 202 (447)
T d1pw4a_ 193 AILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766554444
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.91 E-value=5.6e-09 Score=98.90 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhH
Q 014067 274 QRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLPITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSL 353 (431)
Q Consensus 274 ~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~ 353 (431)
+-+.++.++.+++++...+. .+.++++...++.+++..+..+...+++.+..|++.|+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (417)
T d1pv7a_ 290 NALLLAGTIMSVRIIGSSFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred cchhhhHHHHHHhhhccccc---------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHH
Confidence 44566666666665554432 356677888899999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067 354 ATSLS-WASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 425 (431)
Q Consensus 354 ~~gl~-~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~ 425 (431)
.+|+. .+..++|..+++.+.+.+.+..+ ....|++.++++++..++..+..|+-+
T Consensus 349 ~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 349 IYLVCFCFFKQLAMIFMSVLAGNMYESIG-----------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHC-----------------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99985 46678999999988877653221 224577788888888877777766543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.42 E-value=2.9e-06 Score=81.31 Aligned_cols=144 Identities=11% Similarity=-0.049 Sum_probs=105.0
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 014067 235 ASLPVFPVIFILILAPVYNHVIIPFARKVTKTEMGITHLQRIGTGLILSIVAMAVAALVEIKRKRVAVNSGLVNSSEPLP 314 (431)
Q Consensus 235 ~~l~~~n~~~iil~~pl~~~~~~pl~~~~~~~~~~~s~~~ki~~G~~l~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 314 (431)
+++.+...+...+..|+.+++.++..+| +-+.+|+++.+++.+..+++... .
T Consensus 62 g~~~s~~~~~~~~~~~~~G~l~Dr~g~r-----------~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 113 (447)
T d1pw4a_ 62 GFALSGISIAYGFSKFIMGSVSDRSNPR-----------VFLPAGLILAAAVMLFMGFVPWA-----------------T 113 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHCHHH-----------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHHHHhhccccchh-----------------h
Confidence 4566777777778888888877655443 34667888888888777665311 2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCchhhhHHHHHHHHHHHHHHHHhhhhhhhhccccccCCCCCCCcCCCC
Q 014067 315 ITFLWVALQYLFLGSADLFTLAGMMEFFFTDAPLSMRSLATSLSWASLAMGYYFSTVLVSIVNNITSTYRHTPWLFGSNL 394 (431)
Q Consensus 315 ~s~~wli~~~~l~~igE~~~~~~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l~~~l~~~~~~~~~~~~~~~w~~~~~~ 394 (431)
.++++++...++.++++....+....++.+..|++.|+..+|++....++|..+++.+........ .+|-
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~w~----- 183 (447)
T d1pw4a_ 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----NDWH----- 183 (447)
T ss_dssp SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----CCST-----
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhh-----hccc-----
Confidence 356678888999999999999999999999999999999999999999999999988776654222 1332
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhh
Q 014067 395 NHYHLERFYWLMCILGGLNFLHFLFWAA 422 (431)
Q Consensus 395 n~~~l~~~f~~la~l~~v~~i~~~~~~~ 422 (431)
..|++.+.+.++..++.++..+
T Consensus 184 ------~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 184 ------AALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp ------TCTHHHHHHHHHHHHHHHHHCC
T ss_pred ------ccchhhhhhHHHHHHHHHHhcc
Confidence 2255556666555555554443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=96.55 E-value=0.00056 Score=63.19 Aligned_cols=83 Identities=7% Similarity=-0.060 Sum_probs=68.0
Q ss_pred hHHHHHHHhcccCcccCchhhhcccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHhhhhhhcccccCchhHHHHHHHHH
Q 014067 3 FAGLYIVALGVGGIKGSLAPHGAEQYDETTQLGRKQRSAFFNYYVF-CLSCGALIAVTFVVWIEDNKGWQWGFGISTATI 81 (431)
Q Consensus 3 ~~~l~li~~G~g~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~-~iNiG~~i~~~~~~~l~~~~g~~~~F~i~~i~~ 81 (431)
++...+.+++.+...|...++..|.++++ .|.+.++..+. +.++|.+++|.+.|++.+++||+..|.+.++..
T Consensus 316 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~ 389 (417)
T d1pv7a_ 316 VILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 45566788899999999999999999754 35677887664 556999999999999999999999999988888
Q ss_pred HHHHHHHHhc
Q 014067 82 LLSIPIFLLG 91 (431)
Q Consensus 82 ~i~~iif~~~ 91 (431)
++..++..+.
T Consensus 390 ~~~~~~~~~~ 399 (417)
T d1pv7a_ 390 LGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777665543
No 5
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=26.30 E-value=14 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=21.4
Q ss_pred hhhhhhcccCchhhhHHHHHHHHHH
Q 014067 338 MMEFFFTDAPLSMRSLATSLSWASL 362 (431)
Q Consensus 338 ~~~~~~~~aP~~~~g~~~gl~~l~~ 362 (431)
.-||+.++||.++|+.+--++.-+.
T Consensus 25 qhefissqap~slr~~ynnlyshtq 49 (101)
T d2qkwa1 25 QHEFVSSQAPQSLRNRYNNLYSHTQ 49 (101)
T ss_dssp HHTTTSSSCCSSGGGHHHHHHHHHH
T ss_pred HHHHHhhcCcHHHHHHHhhHHHHHH
Confidence 4589999999999999988887654
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.98 E-value=39 Score=23.13 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 014067 403 YWLMCILGGLNFLHFLFWAARYKYSS 428 (431)
Q Consensus 403 f~~la~l~~v~~i~~~~~~~~~~~~~ 428 (431)
+++++++.++....+....-||++|+
T Consensus 22 ~~i~~iv~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 22 FGLMLIVVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp HHHTTTTTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHHHHHHHhhheeeeccC
Confidence 44444444444555555566665543
No 7
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.74 E-value=3.5e+02 Score=17.99 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=16.8
Q ss_pred cccCchhhhHHHHHHHHHHHHH
Q 014067 344 TDAPLSMRSLATSLSWASLAMG 365 (431)
Q Consensus 344 ~~aP~~~~g~~~gl~~l~~~iG 365 (431)
+..|.+..|+..+......+++
T Consensus 59 Di~P~t~~gr~~~~~~~~~Gi~ 80 (103)
T d1r3jc_ 59 DLYPVTLWGRCVAVVVMVAGIT 80 (103)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHHHH
Confidence 4789999999888777766554
No 8
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.37 E-value=2.9e+02 Score=14.19 Aligned_cols=15 Identities=7% Similarity=0.363 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHH
Q 014067 72 WGFGISTATILLSIP 86 (431)
Q Consensus 72 ~~F~i~~i~~~i~~i 86 (431)
++|.++....+++++
T Consensus 17 lafslamlfvfiali 31 (34)
T d1xmeb2 17 LAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 556665555555554
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.96 E-value=2.2e+02 Score=17.38 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 014067 392 SNLNHYHLERFYWLMCILGGLNFLHFLFWAARYK 425 (431)
Q Consensus 392 ~~~n~~~l~~~f~~la~l~~v~~i~~~~~~~~~~ 425 (431)
+++.+.+-.+-|+...+++++..++.+.+.||.|
T Consensus 31 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 31 EYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKK 64 (64)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTTTSCC
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHhccC
No 10
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.27 E-value=2.8e+02 Score=20.43 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCcceeecCC
Q 014067 70 WQWGFGISTATILLSIPIFLLGSPFYRNKIP 100 (431)
Q Consensus 70 ~~~~F~i~~i~~~i~~iif~~~~~~~~~~~p 100 (431)
|...|+...+++.+++++|.+.+......+|
T Consensus 75 wK~v~g~~~~~i~~s~~i~~~~r~~v~p~~P 105 (144)
T d1v54d_ 75 WKTVVGAAMFFIGFTALLLIWEKHYVYGPIP 105 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Done!