BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014068
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A G+ + V+ L+ +V +D GRT LH AA NGH ++L+++
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLISK-------- 59
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
G+ V +K G T LH AA NG+ + V+LL+ A
Sbjct: 60 ------------GADVNAKDSD-------------GRTPLHHAAENGHKEVVKLLISKGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A G TPLH AA G+ + ++L+S+GA + + +G PLD+AR
Sbjct: 95 DVNAKDS----------DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
G + LL
Sbjct: 145 EHGNEEVVKLL 155
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA NG D V+ L++ A+V+A G TPLH AA G+ + ++L+S+G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDS----------DGRTPLHHAAENGHKEVVKLLISKG 60
Query: 163 ASRMSLNCNGWLPLDVARMWGRHWLEPLL--------APSSDAVMPRFHPS 205
A + + +G PL A G + LL A SD P H +
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A G+ + V+ LL +V +D G+T LH AA NGH ++L+++
Sbjct: 9 IEAAENGNKDRVKDLLENGADVNASDS-DGKTPLHLAAENGHKEVVKLLLS--------- 58
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
D +A K +DG T LH+AA NG+ + V+LLL A
Sbjct: 59 -----------------QGADPNA------KDSDG-KTPLHLAAENGHKEVVKLLLSQGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+ +A G TPLH AA G+ + ++LLS+GA + + +G PLD+AR
Sbjct: 95 DPNAKDSD----------GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
G + LL
Sbjct: 145 EHGNEEVVKLL 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A G+ + V+ L+ +V +D GRT LH+AA GH ++L+++
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHYAAKEGHKEIVKLLISK-------- 59
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
G+ V +K G T LH AA G+ + V+LL+ A
Sbjct: 60 ------------GADVNAKDSD-------------GRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A G TPLH+AA G+ + ++L+S+GA + + +G PLD+AR
Sbjct: 95 DVNAKDSD----------GRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
G + LL
Sbjct: 145 EHGNEEIVKLL 155
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A G+ + V+ LL + +D GRT LH+AA NGH ++L+++
Sbjct: 9 IEAAENGNKDRVKDLLENGADPNASDS-DGRTPLHYAAENGHKEIVKLLLS--------- 58
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
D +A K +DG T LH AA NG+ + V+LLL A
Sbjct: 59 -----------------KGADPNA------KDSDG-RTPLHYAAENGHKEIVKLLLSKGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+ +A G TPLH+AA G+ + ++LLS+GA + + +G PLD+AR
Sbjct: 95 DPNAKDSD----------GRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
G + LL
Sbjct: 145 EHGNEEIVKLL 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN D G+T LH+AA NG + V++LL A+V+A AG TPLH AA
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----------SAGITPLHLAAY 81
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + GW PL +A + G+ +E LL +D
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A G + V+ L+ +V D +G T LH AA NG + + +++
Sbjct: 11 LEAAAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIVEVLL---------- 59
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K+ D VN + GIT LH+AA +G+ + V++LL A
Sbjct: 60 ----------------KNGAD-------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A AG TPLH AA G L+ +VLL GA + + G D++
Sbjct: 97 DVNAYDR----------AGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISI 146
Query: 181 MWGRHWLEPLL 191
G+ L +L
Sbjct: 147 NQGQEDLAEIL 157
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D SG+T LH AA+ GH+ + ++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K D +A K G T LH+AAL G+ + V++LL A
Sbjct: 67 ---------------LKHGADVNAADKM-------GDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A + G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNATDTY----------GFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN D G T LH+AA+ G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----------KMGDTPLHLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + G+ PL +A G +E LL +D
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D +G T LH AAV+GH+ + ++
Sbjct: 19 LEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K D A + G T LH+AA+ G+ + V++LL A
Sbjct: 67 ---------------LKHGADVDAADVY-------GFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A GSTPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAFDM----------TGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWL 187
G L
Sbjct: 155 DNGNEDL 161
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN + G+T LH+AA++G+ + V++LL A+V A + G TPLH AA
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY----------GFTPLHLAAM 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + G PL +A G +E LL +D
Sbjct: 90 TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+AV G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVD----------NTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 163 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
A + + G+ PL +A M G +E LL +D
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 62.4 bits (150), Expect = 5e-10, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 43/151 (28%)
Query: 29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
+GRT LH AA NGH+ ++L+ +++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--------------------------LEAGAD------- 27
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
G+L+ ++LL GA + + NG PL +A
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
A R GH EVV+ LL +V D +GRT LH AA NGH+ ++L++ AD
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 67
Query: 60 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
+ G VK + A VN G T LH+AA NG+ + V+LLL+
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 120 A 120
A
Sbjct: 125 A 125
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN A + G T LH+AA +G+ + V++LL A+V A G TPLH AA
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF----------GYTPLHLAAY 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA +++ +G PL +A WG +E LL +D
Sbjct: 90 WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
++A R G + V+ L+ +V AD +G T LH AA +GH+ + +++ AD S
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 58 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
F + G V+ A VN G+T LH+AA GY + V++LL
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLLKNGA---DVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 118 LHANVSAVTFHYGTSMDL 135
A+V+A T+ D+
Sbjct: 135 HGADVNAQDKFGKTAFDI 152
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 44/179 (24%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D+L G T LH AA GH+ + +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K D +A + G T LH+AA NG+ + V++LL A
Sbjct: 68 ----------------KYGADVNAWDNY-------GATPLHLAADNGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
+V+A + G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAKDYE----------GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G T LH+AA G+ + V++LL A+V+A + G+TPLH AA G+L+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY----------GATPLHLAADNGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
+VLL GA + + G+ PL +A G +E LL +D
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL---------- 55
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K+ D +A K G T LH+AA G+ + V++LL A
Sbjct: 56 ----------------KAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A D G TPLH AA G+L+ +VLL GA + + G P D+A
Sbjct: 93 DVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 181 MWGRHWLEPLLAPSS 195
G + +L ++
Sbjct: 143 REGHEDIAEVLQKAA 157
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN + G T LH+AA NG+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL----------TGITPLHLAAA 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + +G PL +A +G +E LL +D
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA NGH+ + ++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K+ D VN + GIT LH+AA G+ + V++LL A
Sbjct: 67 ---------------LKNGAD-------VNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A Y G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNA----YDND------GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL---------- 55
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K+ D +A K G T LH+AA G+ + V++LL A
Sbjct: 56 ----------------KAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A D G TPLH AA G+L+ +VLL GA + + G P D+A
Sbjct: 93 DVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 181 MWGRHWLEPLLAPSS 195
G + +L ++
Sbjct: 143 DNGNEDIAEVLQKAA 157
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV-PSVPFEV 61
A R GH EV + LL + V A +T LH AA GH ++L++ + P++
Sbjct: 54 AARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112
Query: 62 MNT--QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL--D 117
+T I G +V + ++ A + K G T LH+AA G +LLL D
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKK---GFTPLHVAAKYGKVRVAELLLERD 169
Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
H N + G TPLH A NL ++LL RG S S NG+ PL
Sbjct: 170 AHPNAAGKN------------GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217
Query: 178 VA 179
+A
Sbjct: 218 IA 219
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
A + EV ++LL + + A+ + G T LH AA GH + L+ +
Sbjct: 219 AAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALL------------L 265
Query: 63 NTQIEGDRGDGSSVK--SKCDQSA-------LSK---FVNKAADGGITALHMAALNGYFD 110
+ Q G+ G+ S + Q L K V+ G T LH+A+ G
Sbjct: 266 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 325
Query: 111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 170
V+ LL A+V+A T G +PLH AA G+ +LL GAS ++
Sbjct: 326 LVKFLLQHQADVNAKT----------KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Query: 171 NGWLPLDVARMWG 183
+G PL +A+ G
Sbjct: 376 DGTTPLAIAKRLG 388
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 26/159 (16%)
Query: 48 LVVADFVPSVPFEVMNTQIEGDRGDGSSVK--------SKCDQSALSKF-------VNKA 92
L VA F+ +P V N G + S+VK ++ + ++K+ VN
Sbjct: 18 LHVASFMGHLPI-VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 93 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
A T LH AA G+ + V+LLL+ +AN + T AG TPLH AA G++
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT----------AGHTPLHIAAREGHV 126
Query: 153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
+ LL + AS+ + G+ PL VA +G+ + LL
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 80/216 (37%), Gaps = 46/216 (21%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD---------- 52
A R GH +V+ LL N A +G T LH AA GHV + ++
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145
Query: 53 -FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 111
F P + G + ++ A N A G+T LH+A + D
Sbjct: 146 GFTP--------LHVAAKYGKVRVAELLLERDA---HPNAAGKNGLTPLHVAVHHNNLDI 194
Query: 112 VQLLLD---------------LH-------ANVSAVTFHYGTSMDLIGA-GSTPLHFAAC 148
V+LLL LH V+ YG S + G TPLH AA
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
G+ + +LLS+ A+ N +G PL + G
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH 290
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 62/159 (38%), Gaps = 17/159 (10%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV---PSVPF 59
A + GH E+V LL + N + SG T LH A GHV +++ V +
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 60 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
+ G+ VK A VN G + LH AA G+ D V LLL
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQA---DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 158
A+ + V+ G+TPL A G + VL
Sbjct: 368 ASPNEVS----------SDGTTPLAIAKRLGYISVTDVL 396
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 97 ITALHMAALNGYFDCVQLLLDLHA--NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
+T LH+A+ G+ V+ LL A NVS V TPLH AA G+ +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV------------ETPLHMAARAGHTEV 62
Query: 155 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
+ LL A + + PL A G + LL
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G T LH+AA NG+ + V++LL A+V+AV AG TPL AA
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AGMTPLRLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + G PL +A M+G +E LL +D
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D SG T LH AA NGH+ + ++
Sbjct: 19 LEAARAGRDDEVRILMANGADVNAEDA-SGWTPLHLAAFNGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K+ D VN G+T L +AAL G+ + V++LL A
Sbjct: 67 ---------------LKNGAD-------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A M+ G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNA------NDME----GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 34/117 (29%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
A +GH E+V+ LL +V D + G T LH AA+ GH+ + ++
Sbjct: 87 AALFGHLEIVEVLLKNGADVNAND-MEGHTPLHLAAMFGHLEIVEVL------------- 132
Query: 63 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
+K+ D +A KF G TA ++ NG D ++L L+
Sbjct: 133 -------------LKNGADVNAQDKF-------GKTAFDISIDNGNEDLAEILQKLN 169
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D SG T LH AA GH+ + ++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K D +A+ G T LH+AAL G+ + V++LL A
Sbjct: 67 ---------------LKHGADVNAIDIM-------GSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+AV G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAVDT----------WGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G+T LH+AA G+ + V++LL A+V+A+ GSTPLH AA
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------MGSTPLHLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA +++ G PL +A + G +E LL +D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 44/179 (24%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D+ G T LH NGH+ I +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNANDWF-GITPLHLVVNNGHLEIIEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K D VN + G T LH+AA G+ + V++LL A
Sbjct: 68 ----------------KYAAD-------VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
+V+A+ + G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAMDYQ----------GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
GIT LH+ NG+ + +++LL A+V+A +G TPLH AA G+L+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASD----------KSGWTPLHLAAYRGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
+VLL GA +++ G+ PL +A G +E LL +D
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G+T LH+AA G+ + V++LL A+V+A+ GSTPLH AA
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------XGSTPLHLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA +++ G PL +A + G +E LL +D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D SG T LH AA GH+ + ++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K D +A+ G T LH+AAL G+ + V++LL A
Sbjct: 67 ---------------LKHGADVNAIDIX-------GSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+AV G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAVDT----------WGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+A +G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNATD----------ASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 163 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
A +++ G PL +A + G +E LL +D
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G T LHMAA G+ + V++LL A+V+AV + G+TPLH AA G+L+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTTPLHLAASLGHLEIV 84
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
+VLL GA + + G PL +A WG +E LL +D
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ + D+ GRT LH AA GH+ + +++
Sbjct: 7 LEAARAGQDDEVRILMANGADANAYDHY-GRTPLHMAAAVGHLEIVEVLL---------- 55
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
++ D VN G T LH+AA G+ + V++LL A
Sbjct: 56 ----------------RNGAD-------VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A G TPL+ AA G+L+ +VLL GA + + G D++
Sbjct: 93 DVNAKD----------ATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 143 DIGNEDLAEIL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA GH+ + ++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K+ D +A K G T LH+AA G+ + V++LL A
Sbjct: 67 ---------------LKAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAKDKD----------GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD----------GYTPLHLAAR 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 90 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K+ D +AL F G T LH+AA G+ + V++LL A
Sbjct: 68 ----------------KNGADVNALD-F------SGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A D IG STPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNA--------DDTIG--STPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G T LH+AA G+ + V++LL A+V+A+ F +GSTPLH AA G+L+
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDF----------SGSTPLHLAAKRGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
+VLL GA + + G PL +A G +E LL +D
Sbjct: 97 EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 43/135 (31%)
Query: 29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
+GRT LH AA NGH+ ++L++ ++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL--------------------------EAGAD------- 27
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGA 163
G+L+ ++LL GA
Sbjct: 78 NGHLEVVKLLLEAGA 92
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA G+L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51
Query: 156 QVLLSRGASRMSLNCNGWLPLDVA 179
++LL GA + + NG PL +A
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLA 75
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 34/118 (28%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
A R GH EVV+ LL +V D +GRT LH AA NGH+ ++L+
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLL------------- 54
Query: 63 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+++ D VN G T LH+AA NG+ + V+LLL+ A
Sbjct: 55 -------------LEAGAD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN A G T LH+AA G+ + V++LL A+V+A Y T GSTPLH AA
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDT------LGSTPLHLAAH 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + NG PL +A G +E LL +D
Sbjct: 90 FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V AD + G T LH AA GH+ + +++
Sbjct: 19 LEAARAGRDDEVRILMANGADVNAADVV-GWTPLHLAAYWGHLEIVEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K+ D +A G T LH+AA G+ + V++LL A
Sbjct: 68 ----------------KNGADVNAYDTL-------GSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A + G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAKDDN----------GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 NNGNEDLAEIL 165
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+A G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADV----------VGWTPLHLAAYWGHLEIVEVLLKNG 70
Query: 163 ASRMSLNCNGWLPLDVARMWGR-HWLEPLL-------APSSDAVMPRFHPSNYLSLPLLS 214
A + + G PL +A +G +E LL A + + P +N L ++
Sbjct: 71 ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 215 VL 216
VL
Sbjct: 131 VL 132
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA GH + +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K D VN G T LH+AA NG+ + V++LL A
Sbjct: 68 ----------------KHGAD-------VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
+V+A + G TPLH AA G+L+ +VLL GA + + G D++
Sbjct: 105 DVNAQDAY----------GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
G L +L
Sbjct: 155 DNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN + G T LH+AA G+ + V++LL A+V+A S+ G TPLH AA
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-----DDSL-----GVTPLHLAAD 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+L+ +VLL GA + + NG+ PL +A G +E LL +D
Sbjct: 90 RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
++A R G + V+ L+ +V +D++ G T LH AA GH+ + +++ AD
Sbjct: 19 LEAARAGQDDEVRILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 58 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
V + DRG V+ A VN G T LH+AA G+ + V++LL
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGA---DVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 118 LHANVSAVTFHYGTSMDL-IGAGSTPL 143
A+V+A T+ D+ I G+ L
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW----------GRTPLHLAAT 89
Query: 149 GGNLKCCQVLLSRGA 163
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
A + GH E+V+ LL +V +D + GRT LH AA GH+ + +++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASD-IWGRTPLHLAATVGHLEIVEVLL 100
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 163 ASRMSLNCNGWLPLDVARMWG 183
A + + G PL +A G
Sbjct: 71 ADVNASDIWGRTPLHLAATVG 91
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----------SWGRTPLHLAAT 89
Query: 149 GGNLKCCQVLLSRGA 163
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
A + GH E+V+ LL +V +D GRT LH AA GH+ + +++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSW-GRTPLHLAATVGHLEIVEVLL 100
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 163 ASRMSLNCNGWLPLDVARMWG 183
A + + G PL +A G
Sbjct: 71 ADVNASDSWGRTPLHLAATVG 91
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW----------GRTPLHLAAT 89
Query: 149 GGNLKCCQVLLSRGA 163
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 163 ASRMSLNCNGWLPLDVARMWG 183
A + + G PL +A G
Sbjct: 71 ADVNARDIWGRTPLHLAATVG 91
Score = 35.8 bits (81), Expect = 0.047, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
A + GH E+V+ LL +V D + GRT LH AA GH+ + +++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARD-IWGRTPLHLAATVGHLEIVEVLL 100
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
+AL +A+ GY D V LLL+ +++ ++ G TPL +A G ++KC +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEA 120
Query: 158 LLSRGASRMSLNCNGWLPLDVA 179
LL+RGA + +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
+AL +A+ GY D V LLL+ +++ ++ G TPL +A G ++KC +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVHGNHVKCVEA 120
Query: 158 LLSRGASRMSLNCNGWLPLDVA 179
LL+RGA + +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G+T LH+AA+N + + V++LL A+V+A+ D I G TPLH A
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--------DAI--GETPLHLVAM 89
Query: 149 GGNLKCCQVLLSRGA 163
G+L+ +VLL GA
Sbjct: 90 YGHLEIVEVLLKHGA 104
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+A G TPLH AA +L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAED----------KVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 163 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
A +++ G PL + M+G +E LL +D
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 34/135 (25%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D + G T LH AA+N H+ + ++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAEDKV-GLTPLHLAAMNDHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K+ D +A+ G T LH+ A+ G+ + V++LL A
Sbjct: 67 ---------------LKNGADVNAIDAI-------GETPLHLVAMYGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDL 135
+V+A T+ D+
Sbjct: 105 DVNAQDKFGKTAFDI 119
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G T LH+AA G+ + V++LL A+V+A G TPLH AA G+L+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKD----------SLGVTPLHLAARRGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
+VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 34/133 (25%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
A +GH E+V+ LL +V D L G T LH AA GH+ + +++
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSL-GVTPLHLAARRGHLEIVEVLL------------ 100
Query: 63 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
K+ D VN + G T LH+AA G+ + V++LL A+V
Sbjct: 101 --------------KNGAD-------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 123 SAVTFHYGTSMDL 135
+A T+ D+
Sbjct: 140 NAQDKFGKTAFDI 152
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
+N G T LH+AA +G+ D VQ LL A+++AV H G+ PLH+A
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 114
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
G + + L++ GA N G +P+D A+
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 72 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 131
+G++V + +N+ D G + LH A G V++L+ G
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-----------MRGA 63
Query: 132 SMDLIGAGS-TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
++++ G TPLH AA G+ Q LL A ++N +G +PL A WG+
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
+N G T LH+AA +G+ D VQ LL A+++AV H G+ PLH+A
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 109
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
G + + L++ GA N G +P+D A+
Sbjct: 110 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 72 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 131
+G++V + +N+ D G + LH A G V++L+ G
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-----------MRGA 58
Query: 132 SMDLIGAGS-TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
++++ G TPLH AA G+ Q LL A ++N +G +PL A WG+
Sbjct: 59 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 57/193 (29%)
Query: 10 EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 69
E+ + +L + TR D S RTALH+A GH + ++ VP
Sbjct: 21 ELKERILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVP-------------- 65
Query: 70 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT--- 126
VN D G + LH+AA G + V+ LL A+V+AV
Sbjct: 66 -------------------VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Query: 127 ---FHYGTSMD-------LIGAGSTP----------LHFAACGGNLKCCQVLLSRGASRM 166
HY S + L+ G+ P +H AA GNLK +LL AS
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 167 SLNCNGWLPLDVA 179
+ G PL +A
Sbjct: 167 IQDTEGNTPLHLA 179
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
TALH A G+ + V+ LL L V+ D AG +PLH AA G + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGXDEIVKA 91
Query: 158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
LL +GA ++N NG PL A RH + +L
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 57/193 (29%)
Query: 10 EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 69
E+ + +L + TR D S RTALH+A GH + ++ VP
Sbjct: 21 ELKERILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVP-------------- 65
Query: 70 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT--- 126
VN D G + LH+AA G + V+ LL A+V+AV
Sbjct: 66 -------------------VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG 106
Query: 127 ---FHYGTSMD-------LIGAGSTP----------LHFAACGGNLKCCQVLLSRGASRM 166
HY S + L+ G+ P +H AA GNLK +LL AS
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 167 SLNCNGWLPLDVA 179
+ G PL +A
Sbjct: 167 IQDTEGNTPLHLA 179
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
TALH A G+ + V+ LL L V+ D AG +PLH AA G + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
LL +GA ++N NG PL A RH + +L
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 48 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 107
L+V + S E + I D+ S+ ++ DQ + TALH A G
Sbjct: 9 LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 52
Query: 108 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 167
+ + V+ LL L V+ D AG +PLH AA G + + LL +GA +
Sbjct: 53 HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 168 LNCNGWLPLDVARMWGRHWLEPLL 191
+N NG PL A RH + +L
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVML 126
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 30/197 (15%)
Query: 10 EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMN---TQI 66
E+ +++L + TR D S RTALH+A GH + ++ VP + I
Sbjct: 22 ELKESILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI 80
Query: 67 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 126
G VK+ + A VN+ G T LH AA + +LL+ AN A
Sbjct: 81 AASAGRDEIVKALLGKGAQVNAVNQ---NGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 127 FHYGTSMDLIGA-----------------------GSTPLHFAACGGNLKCCQVLLSRGA 163
+ T+M A G+TPLH A ++ ++L+S+GA
Sbjct: 138 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 197
Query: 164 SRMSLNCNGWLPLDVAR 180
S N PL VA+
Sbjct: 198 SIYIENKEEKTPLQVAK 214
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 65/177 (36%), Gaps = 44/177 (24%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
AC GH E+V+ LL V D +G + LH AA G ++ ++
Sbjct: 48 ACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGRDEIVKALL------------ 94
Query: 63 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
G G+ VN G T LH AA + +LL+ AN
Sbjct: 95 --------GKGAQ-------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
A + T+M H AA GNLK +LL AS + G PL +A
Sbjct: 134 DAKDHYEATAM----------HRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 33/138 (23%)
Query: 30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
G TALH AA+ ++ +V+ + P + FE M +++
Sbjct: 37 GETALHIAALYDNLEA-AMVLMEAAPELVFEPMTSELYE--------------------- 74
Query: 90 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSA----VTFHYGTSMDLIGAGSTPLHF 145
G TALH+A +N + V+ LL A+VSA FHY +LI G PL F
Sbjct: 75 ------GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY-RPHNLIYYGEHPLSF 127
Query: 146 AACGGNLKCCQVLLSRGA 163
AAC G+ + ++L+ GA
Sbjct: 128 AACVGSEEIVRLLIEHGA 145
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 81 DQSALSKF-------VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 133
D ALSK V++ G TALH+AAL +D ++ + L + F TS
Sbjct: 15 DVQALSKLLKFEGCEVHQRGAMGETALHIAAL---YDNLEAAMVLMEAAPELVFEPMTSE 71
Query: 134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
+ G T LH A N+ + LL+RGAS
Sbjct: 72 --LYEGQTALHIAVINQNVNLVRALLARGAS 100
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 48 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 107
L+V + S E + I D+ S+ ++ DQ + TALH A G
Sbjct: 8 LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 51
Query: 108 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 167
+ + V+ LL L V+ D AG +PLH AA G + + LL +GA +
Sbjct: 52 HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 168 LNCNGWLPLDVARMWGRHWLEPLL 191
+N NG PL A RH + +L
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVML 125
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 30/197 (15%)
Query: 10 EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMN---TQI 66
E+ +++L + TR D S RTALH+A GH + ++ VP + I
Sbjct: 21 ELKESILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI 79
Query: 67 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 126
G VK+ + A VN+ G T LH AA + +LL+ AN A
Sbjct: 80 AASAGRDEIVKALLGKGAQVNAVNQ---NGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 127 FHYGTSMDLIGA-----------------------GSTPLHFAACGGNLKCCQVLLSRGA 163
+ T+M A G+TPLH A ++ ++L+S+GA
Sbjct: 137 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA 196
Query: 164 SRMSLNCNGWLPLDVAR 180
S N PL VA+
Sbjct: 197 SIYIENKEEKTPLQVAK 213
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 65/177 (36%), Gaps = 44/177 (24%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
AC GH E+V+ LL V D +G + LH AA G ++ ++
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGRDEIVKALL------------ 93
Query: 63 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
G G+ VN G T LH AA + +LL+ AN
Sbjct: 94 --------GKGAQ-------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
A + T+M H AA GNLK +LL AS + G PL +A
Sbjct: 133 DAKDHYEATAM----------HRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
M+A H E V+ L+ V D G T LH AA GH ++ ++++ V
Sbjct: 49 MEAAENNHLEAVKYLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDV--- 104
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA------LHMAALNGYFDCVQL 114
N Q +G + ++K +D I LH AA +G D ++
Sbjct: 105 --NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 115 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 174
LL ++ AV H G +PLH AA C + LSR + N G
Sbjct: 163 LLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Query: 175 PLDVARMWGRHW 186
PL A + + W
Sbjct: 213 PLQCASLNSQVW 224
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 30/189 (15%)
Query: 24 RADYLSGRTALHFAAVNGHVR-CIRLVVADFVPSVPFEVMNTQI--EGDRGDGSSVKSKC 80
+ ++ + R+ LH AA GHV C LV A E T + + +VK
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD----------------------- 117
AL V+ G T LH+AA G+++ VQ LL
Sbjct: 65 KAGAL---VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 118 LHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
H ++ + G+ +++ LH+AA G + ++LL+ ++N +G PL
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 177 DVARMWGRH 185
+A R+
Sbjct: 182 HIAARENRY 190
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G T LH AA NG+ + V+ LL A+V+A S D G+TPLH AA G+ +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKD----GNTPLHLAAKNGHAEIV 58
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
++LL++GA + + +G P +A+ G H + LL
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN + G T LH+AA NG+ + V+LLL A+V+A S D G+TP H A
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA------RSKD----GNTPEHLAKK 84
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGW 173
G+ + ++L ++GA +N W
Sbjct: 85 NGHHEIVKLLDAKGA---DVNARSW 106
Score = 35.4 bits (80), Expect = 0.055, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 34/122 (27%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
A + GH E V+ LL +V A G T LH AA NGH ++L++A
Sbjct: 16 AAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA----------- 63
Query: 63 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
+G + +SK G T H+A NG+ + V+LL A+V
Sbjct: 64 -------KGADVNARSK---------------DGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 123 SA 124
+A
Sbjct: 102 NA 103
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+TPLH AA G+ + + LLS+GA + + +G PL +A G ++ LLA +D
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN + G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED----------NFGITPLHLAAI 89
Query: 149 GGNLKCCQVLLSRGA 163
G+L+ +VLL GA
Sbjct: 90 RGHLEIVEVLLKHGA 104
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 34/135 (25%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA GH+ + +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNALDE-DGLTPLHLAAQLGHLEIVEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K D +A F GIT LH+AA+ G+ + V++LL A
Sbjct: 68 ----------------KYGADVNAEDNF-------GITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDL 135
+V+A T+ D+
Sbjct: 105 DVNAQDKFGKTAFDI 119
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+A L G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNA----------LDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 163 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
A + + G PL +A + G +E LL +D
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
G T LH A++ G + PSV + + N G +VK
Sbjct: 10 GETLLHIASIKGDI-----------PSVEYLLQN-------GSDPNVKDH---------- 41
Query: 90 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
G T LH A +G+ V+LLL A V+ + +PLH AA
Sbjct: 42 -----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKN 86
Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLD 177
G++ ++LLS GASR ++N G P+D
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 37.4 bits (85), Expect = 0.015, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 51
+AC +GH +VV+ LL + V Y + LH AA NGHV ++L+++
Sbjct: 49 EACNHGHLKVVELLLQHKALVNTTGY-QNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
+N A G+TALH A ++ D V+ L++ AN++ G PLH AA
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD----------NEGWIPLHAAAS 115
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
G L + L+S+GA ++N G PLD+
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 93 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
A G TALH+AA GY + ++LL+ +V+ + G TPLH AA G
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKE 245
Query: 153 KCCQVLLSRGASRMSLNCNGWLPLDVA 179
+ C++L+ ++N G DVA
Sbjct: 246 EACRILVENLCDMEAVNKVGQTAFDVA 272
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 90/237 (37%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
+ AC G E V LL ++ A+ + G TALH A ++ +V ++ +V +
Sbjct: 45 LAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNVDMVKFLVEN-------- 95
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
G+++ N+ + G LH AA GY D + L+ A
Sbjct: 96 ------------GANI-------------NQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 121 NVSAVTFHYGTSMDLI-------------------------------------------- 136
+V AV T +D+
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190
Query: 137 ------GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC---NGWLPLDVARMWGR 184
+G T LH AA G + ++L+ +R +N +GW PL A WG+
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQ---ARYDVNIKDYDGWTPLHAAAHWGK 244
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN + G+T L++A +G+ + V++LL A+V+AV D IG TPLH AA
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--------DAIGF--TPLHLAAF 89
Query: 149 GGNLKCCQVLLSRGA 163
G+L+ +VLL GA
Sbjct: 90 IGHLEIAEVLLKHGA 104
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+A + G TPL+ A G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEY----------GLTPLYLATAHGHLEIVEVLLKNG 70
Query: 163 ASRMSLNCNGWLPLDVARMWG 183
A +++ G+ PL +A G
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIG 91
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 35/144 (24%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T L+ A +GH+ + +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDEY-GLTPLYLATAHGHLEIVEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K+ D +A+ G T LH+AA G+ + ++LL A
Sbjct: 68 ----------------KNGADVNAVDAI-------GFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDL-IGAGSTPL 143
+V+A T+ D+ IG G+ L
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDL 128
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 57
A R G + +QTLL F+ +V D G LH AA GH+R + +V +V
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 57
A R G + +QTLL F+ +V D G LH AA GH+R + +V +V
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 49/182 (26%)
Query: 1 MQACRYGHWEVVQTLLL-FRCNVTRADYLSGR--TALHFAAVNGHVRCIRLVVADFVPSV 57
++A R G+ E + LL N +D GR T LH AA VR ++L++
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASD---GRKSTPLHLAAGYNRVRIVQLLLQH----- 80
Query: 58 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
G+ V +K GG+ LH A G+++ +LLL
Sbjct: 81 ---------------GADVHAK-------------DKGGLVPLHNACSYGHYEVTELLLK 112
Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
A V+A MDL TPLH AA ++ C +LLS GA +NC+G +D
Sbjct: 113 HGACVNA--------MDLWQ--FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVD 162
Query: 178 VA 179
+A
Sbjct: 163 MA 164
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 16/108 (14%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAA 147
VN+ +T LH+AA + D +++L +G M+ + + G T LH AA
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVL-----------HKHGAKMNALDSLGQTALHRAA 288
Query: 148 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 195
G+L+ C++LLS G+ ++ G+ A G ++ +L+ S+
Sbjct: 289 LAGHLQTCRLLLSYGSDPSIISLQGF----TAAQMGNEAVQQILSEST 332
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 137 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
G STPLH AA ++ Q+LL GA + + G +PL A +G + + LL
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA 51
A H +V++ L + D L G+TALH AA+ GH++ RL+++
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSL-GQTALHRAALAGHLQTCRLLLS 301
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 57
A R G + +QTLL F+ +V D G LH AA GH+R + +V +V
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 57
A R G + +QTLL + +V D G LH AA GH+R + +V +V
Sbjct: 77 AARAGFLDTLQTLLENQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G +H AA G D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 57
A R G + +QTLL F+ +V D G LH AA GH+R + +V +V
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 94 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
D GITALH A G+ + V+ L+ NV+A G TPLH AA N++
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 154 CCQVLLSRGASRMSL 168
C+ L+ GA+ ++
Sbjct: 118 VCKFLVESGAAVFAM 132
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
++L G FD VQ ++ + S G T LH A C G+ + + L+ G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPN----------DEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 163 ASRMSLNCNGWLPL 176
+ + + +GW PL
Sbjct: 94 VNVNAADSDGWTPL 107
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 7 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 66
GH E+V+ L+ F NV AD G T LH AA +V+ + +V + Q
Sbjct: 81 GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Query: 67 EGDR 70
D+
Sbjct: 140 AADK 143
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 94 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
D GITALH A G+ + V+ L+ NV+A G TPLH AA N++
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 154 CCQVLLSRGASRMSL 168
C+ L+ GA+ ++
Sbjct: 118 VCKFLVESGAAVFAM 132
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
++L G FD VQ ++ + S G T LH A C G+ + + L+ G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPN----------DEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 163 ASRMSLNCNGWLPL 176
+ + + +GW PL
Sbjct: 94 VNVNAADSDGWTPL 107
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 7 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 66
GH E+V+ L+ F NV AD G T LH AA +V+ + +V + Q
Sbjct: 81 GHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Query: 67 EGDR 70
D+
Sbjct: 140 AADK 143
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 95 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
GG+ LH A G+++ +LL+ A V+ TPLH AA G +
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL----------WKFTPLHEAAAKGKYEI 123
Query: 155 CQVLLSRGASRMSLNCNGWLPLDVAR 180
C++LL GA N +G PLD+ +
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
AC YGH+EV + L+ V AD L T LH AA G +L++
Sbjct: 82 ACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLL 128
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 21/159 (13%)
Query: 30 GRTALHFAAVNGHVRCIRLVVADFVP-SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
G+TA H A + C+R ++ P ++ E N +G +V ++C Q +
Sbjct: 79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN--YDGLTALHVAVNTEC-QETVQLL 135
Query: 89 VNKAAD-------GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 141
+ + AD G + L A N VQLLL ANV+A + +GS+
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY----------SGSS 185
Query: 142 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
LH A+ G L + L+ GA NC+ PL VAR
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 88 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFA 146
+A + G T LH+A + G V L++L G +D+ TPLH A
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-------QGGRELDIYNNLRQTPLHLA 53
Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGW 173
++L++ GAS M+L+ +G
Sbjct: 54 VITTLPSVVRLLVTAGASPMALDRHGQ 80
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 95 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
GG+ LH A G+++ +LL+ A V+ TPLH AA G +
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK----------FTPLHEAAAKGKYEI 125
Query: 155 CQVLLSRGASRMSLNCNGWLPLDVAR 180
C++LL GA N +G PLD+ +
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 96
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
AC YGH+EV + L+ V AD L T LH AA G +L++
Sbjct: 84 ACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLL 130
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 95 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
GG+ LH A G+++ +LL+ A V+ TPLH AA G +
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK----------FTPLHEAAAKGKYEI 127
Query: 155 CQVLLSRGASRMSLNCNGWLPLDVAR 180
C++LL GA N +G PLD+ +
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 98
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
AC YGH+EV + L+ V AD L T LH AA G +L++
Sbjct: 86 ACSYGHYEVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLL 132
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 130
GD VK D A + VN+ +GG LH AA G + ++ LL A+++A H+
Sbjct: 13 GDLDEVK---DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH- 68
Query: 131 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
TPL A G++ C ++LLS+GA + +G L+
Sbjct: 69 ---------ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 138 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 196
+G++P+H AA G L +VL+ GA +L+ G LP+ +A G + LAP SD
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 131
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
+AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC ++
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKM 120
Query: 158 LLSRGASRMSLNCNGWLPLDVARMWG 183
LL GA +G+ +D+A G
Sbjct: 121 LLESGADPTIETDSGYNSMDLAVALG 146
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
AC G+ ++V+ LL +V D+ +G T L +A HV+C+++++
Sbjct: 76 ACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLL 122
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 138 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 196
+G++P+H AA G L +VL+ GA +L+ G LP+ +A G + LAP SD
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 133
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
+AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC ++
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKM 136
Query: 158 LLSRGASRMSLNCNGWLPLDVARMWG 183
LL GA +G+ +D+A G
Sbjct: 137 LLESGADPTIETDSGYNSMDLAVALG 162
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
AC G+ ++V+ LL +V D+ +G T L +A HV+C+++++
Sbjct: 92 ACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLL 138
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 130
GD VK D A + VN+ +GG LH AA G + ++ LL A+++A H+
Sbjct: 18 GDLDEVK---DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH- 73
Query: 131 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 165
TPL A G++ C ++LLS+GA +
Sbjct: 74 ---------ITPLLSAVYEGHVSCVKLLLSKGADK 99
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
+AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC ++
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKM 118
Query: 158 LLSRGASRMSLNCNGWLPLDVARMWG 183
LL GA +G+ +D+A G
Sbjct: 119 LLESGADPTIETDSGYNSMDLAVALG 144
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
AC G+ ++V+ LL +V D+ +G T L +A HV+C+++++
Sbjct: 74 ACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLL 120
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN + G + LH+AAL+G D + LLL AN A + PLH A
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN----------ADQAVPLHLACQ 128
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
G+ + + LL A + +G PL A G H L LL
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 34/132 (25%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
AC+ GH++VV+ LL + D LSG T L +A GH + L++
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKD-LSGNTPLIYACSGGHHELVALLLQ----------- 173
Query: 63 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
G+S +N + + G TALH A + + V+LLL A+V
Sbjct: 174 ---------HGAS-------------INASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Query: 123 SAVTFHYGTSMD 134
+ T++D
Sbjct: 212 QVLNKRQRTAVD 223
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 68/172 (39%), Gaps = 29/172 (16%)
Query: 21 NVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------DFVPSVPFEVMNTQIEGDRGD 72
NVT D G + LH AA++G I L++ + +VP + Q G
Sbjct: 80 NVTSQD---GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ-----GH 131
Query: 73 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 132
VK D +A NK G T L A G+ + V LLL A+++A
Sbjct: 132 FQVVKCLLDSNAKP---NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN------ 182
Query: 133 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
G+T LH A ++ ++LL GAS LN +D A +
Sbjct: 183 ----NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK 230
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 130
G+ VKS D+ L +NK + G+T LH+A +F+ Q L++ A+V
Sbjct: 83 GNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD---- 137
Query: 131 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 176
PLH AA G+LK ++L G S ++ + GW PL
Sbjct: 138 ------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 130
G+ VKS D+ L +NK + G+T LH+A +F+ Q L++ A+V
Sbjct: 83 GNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD---- 137
Query: 131 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 176
PLH AA G+LK ++L G S ++ + GW PL
Sbjct: 138 ------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 130
G+ VKS D+ L +NK + G+T LH+A +F+ Q L++ A+V
Sbjct: 83 GNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD---- 137
Query: 131 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 176
PLH AA G+LK ++L G S ++ + GW PL
Sbjct: 138 ------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 76 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
+ C L + G T LH+A+++GY V+LL+ L A+V+A
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE--------- 147
Query: 136 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
G T LH A N +LL GA + G+ P + WGR
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT--WGR 194
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
G + LH+AA G+F ++LL + V+ T +D TPLH AA G+
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLR-----AGVSRDARTKVD-----RTPLHMAASEGHANIV 83
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
+VLL GA +N D+ +M HW
Sbjct: 84 EVLLKHGA---DVNAK-----DMLKMTALHW 106
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTR-ADYLSGRTALHFAAVNGHVRCIRLVV 50
A +YGH+ + LL R V+R A RT LH AA GH + +++
Sbjct: 41 AAQYGHFSTTEVLL--RAGVSRDARTKVDRTPLHMAASEGHANIVEVLL 87
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G++PLH AA G+ +VLL G SR + PL +A G + +E LL +D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
A GH +V+ LL +V D L TALH+A + H + L++
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVELLI 120
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 97 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 156
++ LH A L G+ CV++LL A V+ VT + TPL A G+ C
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADW----------HTPLFNACVSGSWDCVN 142
Query: 157 VLLSRGAS 164
+LL GAS
Sbjct: 143 LLLQHGAS 150
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 50/181 (27%)
Query: 2 QACRYGHWEVVQTLLL--FRCNVTRADYLSGRTALHFAAVNGHVRCIRL----------V 49
+A +GH ++ L+ + N+ AD++S LH A + GH+ C+++ V
Sbjct: 65 EAAIHGHQLSLRNLISQGWAVNIITADHVS---PLHEACLGGHLSCVKILLKHGAQVNGV 121
Query: 50 VADF-VP------SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM 102
AD+ P S ++ +N ++ G+SV+ + D + + +H
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQ----HGASVQPESDLA--------------SPIHE 163
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G+ +CV L+ N+ H G TPL+ A C + LL G
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLG----------TPLYLACENQQRACVKKLLESG 213
Query: 163 A 163
A
Sbjct: 214 A 214
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 100 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 159
+H AA++G+ ++ L+ V+ +T + +PLH A GG+L C ++LL
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADH----------VSPLHEACLGGHLSCVKILL 112
Query: 160 SRGASRMSLNCNGWLPL 176
GA + + PL
Sbjct: 113 KHGAQVNGVTADWHTPL 129
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN ++ LH A L G+ CV++LL A V+ VT + TPL A
Sbjct: 29 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW----------HTPLFNACV 78
Query: 149 GGNLKCCQVLLSRGAS 164
G+ C +LL GAS
Sbjct: 79 SGSWDCVNLLLQHGAS 94
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 34/174 (19%)
Query: 2 QACRYGHWEVVQTLLL--FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 59
+A +GH ++ L+ + N+ AD++S LH A + GH+ C+++++
Sbjct: 9 EAAIHGHQLSLRNLISQGWAVNIITADHVS---PLHEACLGGHLSCVKILLKH------- 58
Query: 60 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA---------LHMAALNGYFD 110
Q+ G D + S VN G + +H AA G+ +
Sbjct: 59 ---GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE 115
Query: 111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
CV L+ N+ H G TPL+ A C + LL GA
Sbjct: 116 CVNSLIAYGGNIDHKISHLG----------TPLYLACENQQRACVKKLLESGAD 159
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 100 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS-TPLHFAACGGNLKCCQVL 158
+H AA++G+ ++ L+ G ++++I A +PLH A GG+L C ++L
Sbjct: 7 MHEAAIHGHQLSLRNLIS-----------QGWAVNIITADHVSPLHEACLGGHLSCVKIL 55
Query: 159 LSRGASRMSLNCNGWLPL 176
L GA + + PL
Sbjct: 56 LKHGAQVNGVTADWHTPL 73
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 76 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
+ C L + G T LH+A+++GY V+LL+ L A+V+A
Sbjct: 94 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE--------- 144
Query: 136 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
G T LH A N +LL GA + G+ P + WGR
Sbjct: 145 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT--WGR 191
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
+N A + G TALH AA + V +LL HAN A TPL AA
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD----------DKDETPLFLAAR 193
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
G+ + + LL A+R + LP DVA H + LL
Sbjct: 194 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 137 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 196
G GST LH+ N +C ++LL AS N +G PLD+A+ E LL +
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL---TQ 259
Query: 197 AVMPRFH 203
A+ RF+
Sbjct: 260 ALSGRFN 266
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW--LEPLLAPSSD 196
G TPLH AA G+L+ +VLL GA + G PL +A W H +E LL +D
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA-AWADHLEIVEVLLKHGAD 105
Score = 35.0 bits (79), Expect = 0.091, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 34/135 (25%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L +V DY G T LH AA+ GH+ + ++
Sbjct: 19 LEAARAGQDDEVRILTANGADVNANDYW-GHTPLHLAAMLGHLEIVEVL----------- 66
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
+K+ D VN + G T LH+AA + + V++LL A
Sbjct: 67 ---------------LKNGAD-------VNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDL 135
+V+A T+ D+
Sbjct: 105 DVNAQDKFGKTAFDI 119
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 82 QSALSKFV---NKAADGGI---TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
++A+ K V +K D I TAL A N + LL +NV+ F
Sbjct: 48 ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-------- 99
Query: 136 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPS 194
+G TPL ++ G + LL GA+ N G PL VA +GR ++ LL
Sbjct: 100 --SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 195 SD 196
+D
Sbjct: 158 AD 159
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.4 bits (80), Expect = 0.069, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
G+TPLH AA +L+ +VLL GA + + +G PL +A ++G +E LL +D
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Score = 32.0 bits (71), Expect = 0.60, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 34/135 (25%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
++A R G + V+ L+ +V D G T LH AA H+ + +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNANDR-KGNTPLHLAADYDHLEIVEVLL---------- 67
Query: 61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
K D VN + G T LH+AAL G+ + V++LL A
Sbjct: 68 ----------------KHGAD-------VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDL 135
+V+A T+ D+
Sbjct: 105 DVNAQDKFGKTAFDI 119
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
G T LH A CG N L++ GA+ S + +GW PL
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
GITALH A + V L+ ANV++ H G TPLH AA + C
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSH----------GWTPLHCAASCNDTVIC 103
Query: 156 QVLLSRGAS 164
L+ GA+
Sbjct: 104 MALVQHGAA 112
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 138 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 196
+G++P+H AA G L +VL+ GA + G LP+ +A G + LA SD
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 131
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 91 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
KAADG TALH AAL DC++LLL A V V T++D+
Sbjct: 203 KAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
G+T LH+AA C ++LL A ++N G LD+AR
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 91 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
KAADG TALH AAL DC++LLL A V V T++D+
Sbjct: 222 KAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 130 GTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE 188
G +D A G+T LH+AA C ++LL A ++N G LD+AR E
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275
Query: 189 PLL 191
LL
Sbjct: 276 ELL 278
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 138 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 196
+G++P+H AA G L +VL+ GA + G LP+ +A G + LA SD
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
G T LH+AA NG+ + V+LLL+ A+V+A T+ D+
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
++A R G + V+ L+ +V D +G T LH AA NGH+ ++L++
Sbjct: 11 LEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL 59
Score = 32.0 bits (71), Expect = 0.73, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+A + GSTPLH AA G+L+ ++LL G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAG 62
Query: 163 A 163
A
Sbjct: 63 A 63
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
G T LH+AA NG+ + V+LLL+ A+V A T+ D+
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
AA G D V++L+ A+V+A + GSTPLH AA G+L+ ++LL G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAG 80
Query: 163 ASRMSLNCNGWLPLDVA 179
A + + G D++
Sbjct: 81 ADVXAQDKFGKTAFDIS 97
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV 50
++A R G + V+ L+ +V D +G T LH AA NGH+ ++L++
Sbjct: 29 LEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLL 77
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 94 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
+GG T LH A D V+LLL H + G+TP AA G++K
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLL----------RHGADPVLRKKNGATPFILAAIAGSVK 106
Query: 154 CCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
++ LS+GA + G+ A ++G+
Sbjct: 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 96 GITALHMAALNGYFDCVQLLL 116
G TALH AA GY D VQLLL
Sbjct: 140 GDTALHAAAWKGYADIVQLLL 160
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
VN G TAL+ A G+ D V+ L + + + G T LH AA
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLF----TQPNIELNQQNKL-----GDTALHAAAW 149
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
G Q+LL++GA N L D A
Sbjct: 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 97 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA--GSTPLHFAACGGNLKC 154
+T LH AA+N D V+ + G +D +G STPLH+A G+L
Sbjct: 43 VTLLHWAAINNRIDLVKYYIS-----------KGAIVDQLGGDLNSTPLHWATRQGHLSM 91
Query: 155 CQVLLSRGAS 164
L+ GA
Sbjct: 92 VVQLMKYGAD 101
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 140 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL 187
+T LH+A GN +LL GA+ + N G LD+A+ W+
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM 225
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 94 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
+GG T LH A D V+LLL H + G+TP AA G++K
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLL----------RHGADPVLRKKNGATPFLLAAIAGSVK 86
Query: 154 CCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
++ LS+GA + G+ A ++G+
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 73 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 125
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 27 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ 86
Query: 126 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 183
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 87 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136
Query: 184 RHWLEPLLAPSSD 196
LE L+ +D
Sbjct: 137 EGMLEDLINSHAD 149
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
TPL AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 238 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 291
C +CLE + C H C C L L + PS+ CPLC++ I
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ---------CPLCKNDI 68
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 88 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 148 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 73 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 125
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 28 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 87
Query: 126 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 183
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 88 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 137
Query: 184 RHWLEPLLAPSSD 196
LE L+ +D
Sbjct: 138 EGMLEDLINSHAD 150
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 140 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVM 199
TPL AA G+ + +VLL A+R + LP D+A+ H + LL +
Sbjct: 192 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 251
Query: 200 PRFH 203
P+ H
Sbjct: 252 PQLH 255
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 73 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 125
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 27 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 86
Query: 126 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 183
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 87 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136
Query: 184 RHWLEPLLAPSSD 196
LE L+ +D
Sbjct: 137 EGMLEDLINSHAD 149
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 140 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
TPL AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 88 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 148 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 87 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHA 275
Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
G+ + L RGA + + G PL +A
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 140 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVM 199
TPL AA G+ + +VLL A+R + LP D+A+ H + LL +
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Query: 200 PRFH 203
P+ H
Sbjct: 219 PQLH 222
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 90 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
N+ G TALH+AA D + LL+ A+ + G TPLH A
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----------NMGRTPLHAAVSA 68
Query: 150 GNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWGRHWLEPLLAPSSD 196
Q+L+ A+ + +G PL + AR+ LE L+ +D
Sbjct: 69 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 19/123 (15%)
Query: 83 SALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 135
S +S F+ N+ G TALH+AA D + LL+ A+
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQD--------- 52
Query: 136 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWGRHWLEPLLAP 193
G TPLH A Q+LL A+ + +G PL + AR+ LE L+
Sbjct: 53 -NMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 194 SSD 196
+D
Sbjct: 112 HAD 114
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 140 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
TPL AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 156 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 139 GSTPLHFAACGGNLKCCQVLLSRGA 163
G TPLH AA G+L+ +VLL GA
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGA 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,687,856
Number of Sequences: 62578
Number of extensions: 503113
Number of successful extensions: 1404
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 368
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)