BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014069
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412
C IC E + L C H FC C++EW++R+ CP+CR +K
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 52.4 bits (124), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412
C IC E + L C H FC C++EW++R+ CP+CR +K
Sbjct: 56 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 355 GSYATTEQVNAAGDL--CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCR 408
GS ++ +V D C IC + A ++L C H FC+ C+ +W +R R CP+CR
Sbjct: 1 GSSGSSGRVKQLTDEEECCICMDG-RADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 6/49 (12%)
Query: 362 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEW---LERERTCPLC 407
QV A+ C++C E + P++++C H FC+ C++ W LER+ CP+C
Sbjct: 13 QVEAS---CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412
C IC E + L C H FC C++EW++R+ CP+CR +K
Sbjct: 67 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 355 GSYATTEQVNAAGDLCAICQEKM---HAPILLQCKHLFCEDCVSEWLERERTCPLCR 408
GS T E V +G C +C+E + L C HLF + C+ WLE+ +CP+CR
Sbjct: 4 GSSGTEEHV-GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 369 LCAICQEKMHAPILLQ---CKHLFCEDCVSEWLERERTCPLCRALVKPA 414
LC +C + LL+ C H F CV +WL+ RTCP+CRA P+
Sbjct: 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVS-----EWLER-ERTCPLCRALVKPADLR 417
C IC E + P+ L C H FC+ C++ L++ E +CP+CR +P ++R
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERT-CPLCRALVKPADLRS 418
C IC+ + P+ CKHLFC C+ L+ + CP CR P DL S
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 360 TEQVNAAGD--LCAICQE---KMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413
TE A G C IC K L C H F + CVS WL++ TCP+CR + P
Sbjct: 31 TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 369 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
LC IC E + C HL C C++ W E E + CP CR +K
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 73
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 369 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
LC IC E + C HL C C++ W E E + CP CR +K
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 70
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCV--SEWLERERTCPLCRALVKPADLRSFGDGS 423
CAIC + P+ L CKH+FC CV + WL + C LCR + P D G S
Sbjct: 18 CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR--CALCRQEI-PEDFLDSGPSS 70
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 370 CAIC-QEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412
C IC ++ + + L C H FC C++ W+ + TCPLC+ V+
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 355 GSYATTEQVNAAGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLERERTCPLC 407
GS +++N +LCA+C E L CKH F C+ +WLE + CPLC
Sbjct: 4 GSSGKVKELNLH-ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 357 YATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
Y ++ + LC IC E + C HL C C++ W E E + CP CR +K
Sbjct: 324 YELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 362 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
++ + LC IC E + C HL C C++ W E E + CP CR +K
Sbjct: 329 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 380
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 362 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
++ + LC IC E + C HL C C++ W E E + CP CR +K
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 362 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
++ + LC IC E + C HL C C++ W E E + CP CR +K
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 370 CAIC----QEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALV 411
CA+C ++ A L +C H F +CV WL TCPLCR V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 357 YATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
Y ++ + LC IC E + C HL C C++ W E + + CP CR +K
Sbjct: 16 YELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 72
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERER---TCPLCR 408
C IC E + P+ +C H+FC+ C+ + L +++ CPLC+
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413
C IC++ P++ +C+H FCE C LE R P C +P
Sbjct: 18 CFICRQAFQNPVVTKCRHYFCESCA---LEHFRATPRCYICDQP 58
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 362 QVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVK 412
++ + LC IC E + C HL C C++ W E + + CP CR +K
Sbjct: 333 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEIK 384
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 369 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERE---RTCPLCRALVKPADLR 417
+C IC + + P+ + C H FC C+++ E CPLC+ V+ +R
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERER------TCPLCR 408
C IC E + P+ C H FC C++ E R CP+CR
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCR 66
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 369 LCAICQEK-MHAPILLQCKHLFCEDCVSEWLERERTCPLC 407
+C +C + A +++C H FC+ C+ +LE + CP+C
Sbjct: 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 369 LCAICQEK-MHAPILLQCKHLFCEDCVSEWLERERTCPLC 407
+C +C + A +++C H FC+ C+ +LE + CP+C
Sbjct: 17 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 56
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 369 LCAICQEK-MHAPILLQCKHLFCEDCVSEWLERERTCPLC 407
+C +C + A +++C H FC+ C+ +LE + CP+C
Sbjct: 13 MCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPIC 52
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 370 CAICQEKMHAPILLQCKHLF-CEDCVSEWLERERTCPLCRALVKPADLRSF 419
C +C +K + + + C HL C+DC R CP+CR+ +K +R+F
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRSTIK-GTVRTF 72
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 383 LQCKHLFCEDCVSEWLERERTCPLCR 408
L C HLF + CV +WL + CP+CR
Sbjct: 33 LPCMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 369 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERE---RTCPLC 407
+C IC + + P+ + C H FC C+++ E CPLC
Sbjct: 22 ICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 370 CAICQEKMHAPILLQCKHLF-CEDCVSEWLERERTCPLCRALVKPADLRSF 419
C +C +K + + + C HL C++C R CP+CR ++K +R+F
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK-GTVRTF 343
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 384 QCKHLFCEDCVSEWLERERTCPLCR 408
+C H+FC C+ + L+ TCP CR
Sbjct: 31 ECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 384 QCKHLFCEDCVSEWLERERTCPLCR 408
+C H+FC C+ + L+ TCP CR
Sbjct: 96 ECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 384 QCKHLFCEDCVSEWLERERTCPLCR 408
+C H+FC C+ + L+ TCP CR
Sbjct: 34 ECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 384 QCKHLFCEDCVSEWLERERTCPLCR 408
+C H+FC C+ + L+ TCP CR
Sbjct: 27 ECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 384 QCKHLFCEDCVSEWLERERTCPLCR 408
+C H+FC C+ + L+ TCP CR
Sbjct: 39 ECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 369 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCR 408
+C CQE ++ P+ +C H C+DC+ + + +CP CR
Sbjct: 80 MCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACR 120
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSF 419
C +C ++ + + + C HL C +C + CP+CRA V+ + +R+F
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRAPVR-SRVRTF 60
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 370 CAICQEKMH-APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 418
C IC E + A I+ QC H +C C+ ++L + CP C V DL++
Sbjct: 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN 74
>pdb|1JM7|B Chain B, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 117
Score = 35.0 bits (79), Expect = 0.078, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 370 CAICQEKMHAPILLQ-CKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417
C+ C + P+ L C+H+FC +CVS+ + CP+C DL+
Sbjct: 25 CSRCTNILREPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQDLK 71
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 34.7 bits (78), Expect = 0.093, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 370 CAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 412
C +CQ +LL C+H C+ CV + + CP+CR V+
Sbjct: 18 CVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQ 57
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 34.7 bits (78), Expect = 0.099, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 369 LCAICQEKM-HAPILLQCKHLFCEDCVSEWLERERTCPLCRALV 411
LC+IC+ + A + +C H FC+ C+ CP C +V
Sbjct: 17 LCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCR 408
C CQE + PI C+H C+DC+ + +CP CR
Sbjct: 55 CICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACR 94
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 364 NAAGDLCAICQEKMHAPIL----LQCKHLFCEDCVSEWLERERTCPLC 407
N + C IC E +H + L C HL C E L+ CPLC
Sbjct: 2 NVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALV 411
C IC E + P+ L C H C+ C +E+ CP CR V
Sbjct: 18 CGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 370 CAICQEKMHAPIL----LQCKHLFCEDCVSEWLERERTCPLC 407
C IC E +H + L C HL C E L+ CPLC
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 368 DLCAICQ-EKMHAPILLQ--------------CKHLFCEDCVSEWLERERTCPLCR 408
D CAIC+ + M A + Q C H F C+S W+++ CPLC+
Sbjct: 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 369 LCAICQEKMHAPILL-QCKHLFCEDCVSEWLER-ERTCPLCR-ALVKPADLR 417
+C IC + + + +C H FC DC+ L + CP CR LV LR
Sbjct: 36 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 87
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 364 NAAGDLCAICQEKMHAPILLQC-------KHLFCEDCVSEWLERERTCPL 406
N DLC CQ + +C H F C+S WL+ + CPL
Sbjct: 45 NHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 369 LCAICQEKMHAPILL-QCKHLFCEDCVSEWLER-ERTCPLCR-ALVKPADLR 417
+C IC + + + +C H FC DC+ L + CP CR LV LR
Sbjct: 55 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 106
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 364 NAAGDLCAICQEKMHAPILLQC-------KHLFCEDCVSEWLERERTCPL 406
N DLC CQ + +C H F C+S WL+ + CPL
Sbjct: 47 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 364 NAAGDLCAICQEKMHAPILLQC-------KHLFCEDCVSEWLERERTCPL 406
N DLC CQ + +C H F C+S WL+ + CPL
Sbjct: 56 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 364 NAAGDLCAICQEKMHAPILLQC-------KHLFCEDCVSEWLERERTCPL 406
N DLC CQ + +C H F C+S WL+ + CPL
Sbjct: 45 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 364 NAAGDLCAICQEKMHAPILLQC-------KHLFCEDCVSEWLERERTCPL 406
N DLC CQ + +C H F C+S WL+ + CPL
Sbjct: 39 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 364 NAAGDLCAICQEKMHAPILLQC-------KHLFCEDCVSEWLERERTCPL 406
N DLC CQ + +C H F C+S WL+ + CPL
Sbjct: 37 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 32.7 bits (73), Expect = 0.45, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 364 NAAGDLCAICQEKMHAPILLQC-------KHLFCEDCVSEWLERERTCPL 406
N DLC CQ + +C H F C+S WL+ + CPL
Sbjct: 29 NHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 32.3 bits (72), Expect = 0.50, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 370 CAICQEKMHAPILLQCKHLFCEDCVS-------EWLERERTCPLC 407
C IC E + P+ L C H C C++ + + +CP+C
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 370 CAICQEKMH-APILLQCKHLFCEDCVSEWLERERT-CPLCRALVKPADLRSF 419
C IC EK+ A + C L C C+ WL +R CP CRA P LR
Sbjct: 25 CFICXEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRA---PLQLREL 73
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 358 ATTEQVNAAGD--LCAICQEKMHAPILLQCKHLF-CEDCVSEWLERERTCPLCRALV 411
+T EQ+ + LC IC ++ A + + C HL C+ C E CP+C ++
Sbjct: 13 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA----EAVDKCPMCYTVI 65
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 358 ATTEQVNAAGD--LCAICQEKMHAPILLQCKHLF-CEDCVSEWLERERTCPLCRALV 411
+T EQ+ + LC IC ++ A + + C HL C+ C E CP+C ++
Sbjct: 14 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA----EAVDKCPMCYTVI 66
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 358 ATTEQVNAAGD--LCAICQEKMHAPILLQCKHLF-CEDCVSEWLERERTCPLCRALV 411
+T EQ+ + LC IC ++ A + + C HL C+ C E CP+C ++
Sbjct: 13 STEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCA----EAVDKCPMCYTVI 65
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 369 LCAICQEKMHAPILL-QCKHLFCEDCVSEWLER-ERTCPLCR-ALVKPADLR 417
+C IC + + + +C H FC DC+ L + CP CR LV LR
Sbjct: 56 MCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLR 107
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 370 CAICQEKMHAPILLQCK--HLF-CEDCVSEWLERERTCPLCRALVKPADLRSF 419
C ICQ + ++ K HL C C + +R + CP+CR ++ L F
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 370 CAICQEKMHAPILLQCK--HLF-CEDCVSEWLERERTCPLCRALVKPADLRSF 419
C ICQ + ++ K HL C C + +R + CP+CR ++ L F
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 62
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 28.5 bits (62), Expect = 7.7, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 382 LLQCKHLFCEDC-VSEWLERERTCPLC 407
++ CKH+FC DC + + ++ CP C
Sbjct: 17 MIPCKHVFCYDCAILHEKKGDKMCPGC 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,906,563
Number of Sequences: 62578
Number of extensions: 409916
Number of successful extensions: 751
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 76
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)