Query 014069
Match_columns 431
No_of_seqs 278 out of 1851
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 01:33:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4638 Uncharacterized conser 99.9 1.5E-26 3.3E-31 229.1 6.6 299 26-362 22-344 (371)
2 COG5243 HRD1 HRD ubiquitin lig 99.4 9.7E-12 2.1E-16 124.4 14.1 79 332-411 253-344 (491)
3 KOG4628 Predicted E3 ubiquitin 99.2 8.1E-11 1.7E-15 118.8 9.4 62 368-429 230-295 (348)
4 PF13639 zf-RING_2: Ring finge 99.1 2.7E-11 5.8E-16 87.2 1.5 41 368-408 1-44 (44)
5 KOG0317 Predicted E3 ubiquitin 99.1 7.2E-11 1.6E-15 115.3 3.1 54 364-417 236-289 (293)
6 PLN03208 E3 ubiquitin-protein 98.9 6.2E-10 1.3E-14 104.1 3.9 53 366-418 17-85 (193)
7 KOG0802 E3 ubiquitin ligase [P 98.9 1.2E-09 2.6E-14 117.8 6.2 61 363-425 287-352 (543)
8 PHA02929 N1R/p28-like protein; 98.9 9.4E-10 2E-14 106.5 4.8 47 366-412 173-227 (238)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 9.2E-10 2E-14 81.4 2.6 46 367-412 2-48 (50)
10 KOG0823 Predicted E3 ubiquitin 98.9 1.5E-09 3.2E-14 103.4 3.8 57 367-423 47-107 (230)
11 smart00504 Ubox Modified RING 98.8 2.5E-09 5.4E-14 82.0 3.8 51 368-418 2-52 (63)
12 PF12678 zf-rbx1: RING-H2 zinc 98.8 1.7E-09 3.7E-14 86.5 2.9 43 366-408 18-73 (73)
13 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.8E-09 4E-14 75.8 2.2 38 370-407 1-39 (39)
14 PF15227 zf-C3HC4_4: zinc fing 98.8 2.7E-09 5.8E-14 76.5 2.8 38 370-407 1-42 (42)
15 KOG1734 Predicted RING-contain 98.7 6E-08 1.3E-12 94.1 9.1 99 317-422 181-293 (328)
16 cd00162 RING RING-finger (Real 98.6 2.3E-08 5E-13 70.2 3.4 43 369-411 1-45 (45)
17 KOG0320 Predicted E3 ubiquitin 98.6 1.4E-08 3E-13 93.2 2.4 49 368-416 132-182 (187)
18 TIGR00599 rad18 DNA repair pro 98.6 2.3E-08 4.9E-13 103.4 4.0 52 365-416 24-75 (397)
19 PF00097 zf-C3HC4: Zinc finger 98.6 3.1E-08 6.7E-13 69.9 2.2 38 370-407 1-41 (41)
20 PHA02926 zinc finger-like prot 98.5 4.2E-08 9.2E-13 93.1 2.8 47 366-412 169-230 (242)
21 smart00184 RING Ring finger. E 98.5 9.8E-08 2.1E-12 64.6 3.1 38 370-407 1-39 (39)
22 COG5540 RING-finger-containing 98.5 7.1E-08 1.5E-12 95.0 3.2 47 367-413 323-373 (374)
23 KOG2164 Predicted E3 ubiquitin 98.5 6.7E-08 1.5E-12 101.0 3.3 52 367-418 186-242 (513)
24 COG5574 PEX10 RING-finger-cont 98.5 5.7E-08 1.2E-12 94.2 2.2 52 365-416 213-266 (271)
25 KOG4638 Uncharacterized conser 98.5 1.7E-10 3.7E-15 115.5 -16.0 237 147-387 68-309 (371)
26 KOG0287 Postreplication repair 98.4 7.6E-08 1.6E-12 95.9 1.3 51 368-418 24-74 (442)
27 PF14634 zf-RING_5: zinc-RING 98.4 1.9E-07 4.2E-12 67.3 2.8 41 369-409 1-44 (44)
28 PF04564 U-box: U-box domain; 98.4 1.7E-07 3.8E-12 74.8 2.4 51 367-417 4-55 (73)
29 PF12861 zf-Apc11: Anaphase-pr 98.3 4.3E-07 9.3E-12 74.5 3.0 48 366-413 20-83 (85)
30 COG5432 RAD18 RING-finger-cont 98.3 2.6E-07 5.6E-12 90.5 1.8 51 367-417 25-75 (391)
31 PF13445 zf-RING_UBOX: RING-ty 98.3 3.6E-07 7.8E-12 65.9 1.8 30 370-400 1-34 (43)
32 KOG0828 Predicted E3 ubiquitin 98.2 1.9E-05 4.2E-10 82.3 13.2 49 365-413 569-635 (636)
33 KOG0978 E3 ubiquitin ligase in 98.2 1.3E-06 2.8E-11 95.4 3.8 51 368-418 644-695 (698)
34 KOG4265 Predicted E3 ubiquitin 98.1 2.1E-06 4.5E-11 86.7 2.8 48 365-412 288-336 (349)
35 KOG4172 Predicted E3 ubiquitin 98.0 8.7E-07 1.9E-11 66.4 -0.4 47 366-412 6-54 (62)
36 KOG2177 Predicted E3 ubiquitin 97.9 4.3E-06 9.4E-11 79.9 2.1 45 365-409 11-55 (386)
37 KOG0824 Predicted E3 ubiquitin 97.9 4.3E-06 9.2E-11 82.6 1.9 48 367-414 7-55 (324)
38 PF14835 zf-RING_6: zf-RING of 97.9 4E-06 8.7E-11 65.1 0.6 49 368-418 8-57 (65)
39 TIGR00570 cdk7 CDK-activating 97.8 1.2E-05 2.6E-10 80.6 3.8 51 367-417 3-59 (309)
40 KOG2879 Predicted E3 ubiquitin 97.5 0.0003 6.5E-09 69.0 7.9 52 361-412 233-287 (298)
41 COG5194 APC11 Component of SCF 97.5 8.2E-05 1.8E-09 60.1 2.7 29 384-412 53-81 (88)
42 KOG1493 Anaphase-promoting com 97.5 3.6E-05 7.9E-10 61.6 0.7 46 367-412 20-81 (84)
43 KOG4159 Predicted E3 ubiquitin 97.4 8.8E-05 1.9E-09 77.1 2.3 49 365-413 82-130 (398)
44 COG5219 Uncharacterized conser 97.4 5.7E-05 1.2E-09 83.8 0.9 46 367-412 1469-1523(1525)
45 smart00744 RINGv The RING-vari 97.3 0.00018 4E-09 53.2 2.4 40 369-408 1-49 (49)
46 KOG1785 Tyrosine kinase negati 97.2 0.00011 2.4E-09 75.1 1.5 47 368-414 370-418 (563)
47 COG5152 Uncharacterized conser 97.2 0.00011 2.5E-09 68.8 1.1 45 367-411 196-240 (259)
48 KOG1039 Predicted E3 ubiquitin 97.2 0.00017 3.7E-09 73.6 2.2 47 366-412 160-221 (344)
49 KOG1002 Nucleotide excision re 97.2 0.00042 9E-09 73.2 4.8 50 364-413 533-587 (791)
50 PF11793 FANCL_C: FANCL C-term 97.2 8.4E-05 1.8E-09 59.1 -0.3 45 368-412 3-66 (70)
51 KOG0804 Cytoplasmic Zn-finger 97.0 0.00022 4.8E-09 74.0 1.3 43 368-412 176-222 (493)
52 KOG0827 Predicted E3 ubiquitin 96.9 0.00036 7.8E-09 71.3 1.6 44 368-411 5-55 (465)
53 KOG0311 Predicted E3 ubiquitin 96.9 0.00013 2.9E-09 73.6 -1.5 48 367-414 43-92 (381)
54 KOG0297 TNF receptor-associate 96.9 0.00046 1E-08 72.0 2.0 54 365-418 19-73 (391)
55 KOG1813 Predicted E3 ubiquitin 96.9 0.00033 7.1E-09 69.4 0.9 47 366-412 240-286 (313)
56 KOG1645 RING-finger-containing 96.8 0.00048 1E-08 70.8 1.5 50 366-415 3-59 (463)
57 KOG4692 Predicted E3 ubiquitin 96.7 0.0012 2.5E-08 66.9 2.9 48 365-412 420-467 (489)
58 KOG3039 Uncharacterized conser 96.6 0.0015 3.3E-08 63.3 3.4 60 367-426 221-284 (303)
59 PF11789 zf-Nse: Zinc-finger o 96.5 0.0013 2.9E-08 50.2 1.7 41 366-406 10-53 (57)
60 KOG0825 PHD Zn-finger protein 96.4 0.00072 1.6E-08 74.2 -0.1 35 382-416 141-175 (1134)
61 COG5222 Uncharacterized conser 96.4 0.0025 5.5E-08 63.2 3.5 44 368-411 275-321 (427)
62 KOG1571 Predicted E3 ubiquitin 96.4 0.0029 6.3E-08 64.4 3.7 43 367-412 305-347 (355)
63 KOG2930 SCF ubiquitin ligase, 96.3 0.0016 3.5E-08 55.1 1.5 27 384-410 80-106 (114)
64 KOG1941 Acetylcholine receptor 96.1 0.0049 1.1E-07 63.3 3.5 45 365-409 363-413 (518)
65 KOG2660 Locus-specific chromos 96.0 0.0018 3.8E-08 65.2 -0.1 48 367-414 15-63 (331)
66 KOG4275 Predicted E3 ubiquitin 95.8 0.0015 3.4E-08 64.6 -1.1 42 367-412 300-342 (350)
67 KOG1814 Predicted E3 ubiquitin 95.7 0.0038 8.2E-08 64.5 1.1 56 354-409 171-237 (445)
68 COG5236 Uncharacterized conser 95.6 0.0074 1.6E-07 61.1 2.7 55 357-411 51-107 (493)
69 KOG1001 Helicase-like transcri 95.6 0.0049 1.1E-07 68.4 1.5 47 368-415 455-503 (674)
70 PF14447 Prok-RING_4: Prokaryo 95.5 0.0076 1.6E-07 45.6 1.6 47 367-415 7-53 (55)
71 PHA02825 LAP/PHD finger-like p 95.2 0.017 3.8E-07 52.7 3.3 56 364-420 5-71 (162)
72 PF10272 Tmpp129: Putative tra 95.0 0.032 6.9E-07 57.5 5.0 75 338-416 246-355 (358)
73 PHA02862 5L protein; Provision 95.0 0.018 3.9E-07 51.8 2.8 45 367-412 2-53 (156)
74 KOG1428 Inhibitor of type V ad 94.8 0.015 3.3E-07 67.6 2.1 48 365-412 3484-3544(3738)
75 KOG0826 Predicted E3 ubiquitin 94.7 0.08 1.7E-06 53.5 6.8 48 366-413 299-347 (357)
76 KOG4739 Uncharacterized protei 94.4 0.014 2.9E-07 56.7 0.5 44 369-414 5-50 (233)
77 KOG2114 Vacuolar assembly/sort 94.1 0.047 1E-06 61.1 4.0 40 368-410 841-881 (933)
78 PF04641 Rtf2: Rtf2 RING-finge 93.8 0.059 1.3E-06 53.2 3.7 56 365-421 111-170 (260)
79 KOG4445 Uncharacterized conser 93.6 0.021 4.5E-07 57.0 0.1 48 367-414 115-188 (368)
80 KOG4185 Predicted E3 ubiquitin 93.3 0.046 1E-06 54.5 2.1 44 368-411 4-54 (296)
81 COG5175 MOT2 Transcriptional r 92.8 0.055 1.2E-06 54.9 1.7 53 365-417 12-69 (480)
82 KOG3970 Predicted E3 ubiquitin 92.2 0.11 2.3E-06 50.1 2.8 46 367-412 50-105 (299)
83 PF14570 zf-RING_4: RING/Ubox 92.2 0.09 2E-06 38.9 1.8 42 370-411 1-47 (48)
84 PHA03096 p28-like protein; Pro 92.0 0.081 1.8E-06 53.1 1.8 42 368-409 179-231 (284)
85 KOG2932 E3 ubiquitin ligase in 91.8 0.064 1.4E-06 53.8 0.9 42 369-412 92-134 (389)
86 KOG0298 DEAD box-containing he 91.5 0.082 1.8E-06 61.5 1.4 43 367-409 1153-1196(1394)
87 PF10367 Vps39_2: Vacuolar sor 91.5 0.26 5.7E-06 41.1 4.1 31 365-395 76-108 (109)
88 KOG1100 Predicted E3 ubiquitin 90.7 0.11 2.3E-06 49.9 1.1 40 369-412 160-200 (207)
89 PF12906 RINGv: RING-variant d 90.6 0.17 3.8E-06 37.0 1.9 38 370-407 1-47 (47)
90 PF05290 Baculo_IE-1: Baculovi 90.3 0.77 1.7E-05 41.0 6.0 48 368-415 81-135 (140)
91 PF05883 Baculo_RING: Baculovi 89.3 0.19 4.2E-06 44.8 1.5 42 367-408 26-76 (134)
92 KOG3800 Predicted E3 ubiquitin 89.0 0.28 6E-06 49.0 2.5 48 369-416 2-55 (300)
93 PF07800 DUF1644: Protein of u 88.9 0.32 7E-06 44.6 2.7 33 367-399 2-47 (162)
94 KOG0802 E3 ubiquitin ligase [P 88.4 0.26 5.6E-06 53.7 2.0 58 354-415 466-523 (543)
95 KOG2817 Predicted E3 ubiquitin 88.3 1.6 3.5E-05 45.4 7.5 44 368-411 335-384 (394)
96 PF03854 zf-P11: P-11 zinc fin 88.2 0.2 4.4E-06 36.9 0.7 43 369-413 4-47 (50)
97 KOG4367 Predicted Zn-finger pr 87.7 0.29 6.3E-06 51.2 1.8 35 366-400 3-37 (699)
98 PF08746 zf-RING-like: RING-li 87.5 0.53 1.1E-05 33.9 2.5 38 370-407 1-43 (43)
99 KOG3268 Predicted E3 ubiquitin 87.3 0.38 8.2E-06 44.9 2.1 46 369-414 167-230 (234)
100 KOG4362 Transcriptional regula 85.5 0.21 4.6E-06 55.2 -0.5 49 367-415 21-72 (684)
101 KOG3899 Uncharacterized conser 84.9 0.36 7.7E-06 48.3 0.7 32 385-416 325-369 (381)
102 KOG1940 Zn-finger protein [Gen 84.7 0.62 1.4E-05 46.5 2.3 42 368-409 159-204 (276)
103 KOG3002 Zn finger protein [Gen 83.1 0.74 1.6E-05 46.6 2.2 41 368-412 49-91 (299)
104 COG5183 SSM4 Protein involved 82.9 0.68 1.5E-05 51.9 1.9 51 365-415 10-69 (1175)
105 COG5220 TFB3 Cdk activating ki 81.9 0.37 8E-06 47.0 -0.5 45 367-411 10-63 (314)
106 KOG1952 Transcription factor N 81.7 0.69 1.5E-05 52.1 1.4 45 366-410 190-245 (950)
107 KOG0309 Conserved WD40 repeat- 81.2 0.86 1.9E-05 50.8 1.9 25 382-406 1045-1069(1081)
108 KOG0825 PHD Zn-finger protein 79.6 0.89 1.9E-05 50.9 1.4 47 366-412 95-154 (1134)
109 KOG0827 Predicted E3 ubiquitin 77.1 0.22 4.8E-06 51.5 -3.8 47 368-414 197-247 (465)
110 KOG2034 Vacuolar sorting prote 75.5 1.3 2.9E-05 50.2 1.3 34 366-399 816-851 (911)
111 KOG1609 Protein involved in mR 73.6 1.7 3.7E-05 43.1 1.5 46 367-412 78-134 (323)
112 KOG3039 Uncharacterized conser 73.3 2.1 4.5E-05 42.1 1.9 34 366-399 42-75 (303)
113 KOG3053 Uncharacterized conser 72.3 1.5 3.3E-05 43.2 0.7 46 366-411 19-81 (293)
114 KOG3161 Predicted E3 ubiquitin 72.3 1.6 3.5E-05 47.9 0.9 35 369-405 13-51 (861)
115 PF02891 zf-MIZ: MIZ/SP-RING z 72.0 1.2 2.6E-05 33.0 -0.1 42 368-410 3-50 (50)
116 KOG3579 Predicted E3 ubiquitin 71.6 2.2 4.8E-05 42.7 1.6 33 368-400 269-305 (352)
117 KOG0801 Predicted E3 ubiquitin 70.8 1.5 3.2E-05 40.5 0.2 28 364-391 174-204 (205)
118 PF13705 TRC8_N: TRC8 N-termin 69.7 13 0.00029 40.2 7.1 91 197-301 379-469 (508)
119 KOG1812 Predicted E3 ubiquitin 64.2 6.2 0.00013 41.3 3.3 34 367-400 146-183 (384)
120 KOG3113 Uncharacterized conser 62.8 8.2 0.00018 38.2 3.5 49 367-417 111-163 (293)
121 COG4393 Predicted membrane pro 57.8 91 0.002 32.3 10.0 49 145-193 5-53 (405)
122 PF04216 FdhE: Protein involve 57.3 4.2 9.1E-05 40.7 0.6 45 366-410 171-220 (290)
123 PF07191 zinc-ribbons_6: zinc- 55.4 1.3 2.8E-05 35.3 -2.7 40 368-412 2-41 (70)
124 KOG4718 Non-SMC (structural ma 54.3 6.6 0.00014 37.8 1.3 42 368-409 182-224 (235)
125 KOG3842 Adaptor protein Pellin 53.4 11 0.00023 38.5 2.7 48 367-414 341-416 (429)
126 KOG1815 Predicted E3 ubiquitin 52.3 6.8 0.00015 41.7 1.2 51 366-416 69-130 (444)
127 KOG0824 Predicted E3 ubiquitin 51.9 5.5 0.00012 40.2 0.4 48 365-412 103-151 (324)
128 KOG0269 WD40 repeat-containing 48.4 16 0.00034 41.2 3.3 43 369-411 781-827 (839)
129 KOG2068 MOT2 transcription fac 47.0 16 0.00035 37.4 2.8 45 368-412 250-298 (327)
130 PF04710 Pellino: Pellino; In 43.5 8 0.00017 40.5 0.1 29 381-412 305-339 (416)
131 KOG3618 Adenylyl cyclase [Gene 42.7 87 0.0019 36.0 7.7 38 279-317 167-204 (1318)
132 PF07975 C1_4: TFIIH C1-like d 41.2 24 0.00051 26.5 2.3 25 384-408 26-50 (51)
133 KOG1829 Uncharacterized conser 41.1 8.9 0.00019 42.2 -0.0 38 367-407 511-556 (580)
134 PF07415 Herpes_LMP2: Gammaher 40.3 9.8 0.00021 39.3 0.1 64 132-195 101-172 (489)
135 COG5109 Uncharacterized conser 39.4 20 0.00043 36.6 2.1 42 368-409 337-384 (396)
136 KOG1812 Predicted E3 ubiquitin 37.0 18 0.00038 38.0 1.4 42 366-407 305-351 (384)
137 KOG2066 Vacuolar assembly/sort 36.5 28 0.00061 39.5 2.9 42 365-407 782-830 (846)
138 KOG3842 Adaptor protein Pellin 35.6 18 0.0004 36.9 1.2 32 381-412 318-352 (429)
139 PF06906 DUF1272: Protein of u 35.5 47 0.001 25.5 3.1 45 369-415 7-55 (57)
140 PF13901 DUF4206: Domain of un 35.4 24 0.00051 33.6 1.9 42 362-408 147-196 (202)
141 PF04710 Pellino: Pellino; In 35.3 12 0.00027 39.1 0.0 46 367-412 328-401 (416)
142 TIGR00622 ssl1 transcription f 35.0 27 0.00059 30.4 2.0 41 368-408 56-110 (112)
143 PF10497 zf-4CXXC_R1: Zinc-fin 34.0 33 0.00072 29.4 2.4 25 386-410 37-70 (105)
144 PF06844 DUF1244: Protein of u 33.7 22 0.00047 28.1 1.1 13 388-400 11-23 (68)
145 PF00412 LIM: LIM domain; Int 33.1 23 0.0005 25.9 1.2 38 370-415 1-40 (58)
146 COG3788 Uncharacterized relati 31.5 2.5E+02 0.0053 25.0 7.3 77 140-222 42-128 (131)
147 KOG2807 RNA polymerase II tran 31.1 34 0.00073 35.2 2.2 41 368-408 331-374 (378)
148 PF01363 FYVE: FYVE zinc finge 29.7 20 0.00043 27.6 0.3 33 366-398 8-44 (69)
149 PRK03564 formate dehydrogenase 29.5 21 0.00045 36.5 0.5 44 366-409 186-234 (309)
150 KOG1814 Predicted E3 ubiquitin 28.7 87 0.0019 33.2 4.8 35 363-397 364-404 (445)
151 PF10146 zf-C4H2: Zinc finger- 27.9 42 0.00091 32.8 2.2 27 389-415 196-222 (230)
152 TIGR01562 FdhE formate dehydro 27.8 16 0.00035 37.1 -0.6 43 367-409 184-232 (305)
153 KOG2302 T-type voltage-gated C 27.5 1.2E+03 0.025 28.4 14.8 18 240-257 1192-1213(1956)
154 PF14018 DUF4234: Domain of un 26.9 1.6E+02 0.0034 23.0 5.1 51 168-222 13-63 (75)
155 PF14353 CpXC: CpXC protein 26.7 68 0.0015 27.8 3.2 56 369-424 3-61 (128)
156 KOG1341 Na+/K+ transporter [In 26.2 2.1E+02 0.0046 32.2 7.3 41 156-200 464-504 (854)
157 PRK04023 DNA polymerase II lar 26.1 40 0.00087 39.5 2.0 47 366-414 625-676 (1121)
158 KOG2231 Predicted E3 ubiquitin 25.9 52 0.0011 37.0 2.7 44 369-412 2-52 (669)
159 KOG4185 Predicted E3 ubiquitin 25.1 18 0.0004 35.9 -0.8 44 367-410 207-265 (296)
160 smart00132 LIM Zinc-binding do 25.0 62 0.0013 21.1 2.1 34 370-411 2-37 (39)
161 PRK11595 DNA utilization prote 24.8 65 0.0014 30.9 3.0 38 369-411 7-44 (227)
162 COG1675 TFA1 Transcription ini 24.5 1.3E+02 0.0027 28.4 4.7 34 367-415 113-146 (176)
163 KOG4451 Uncharacterized conser 24.4 49 0.0011 32.4 1.9 28 388-415 250-277 (286)
164 PF14446 Prok-RING_1: Prokaryo 24.4 77 0.0017 24.1 2.6 36 367-406 5-44 (54)
165 COG4647 AcxC Acetone carboxyla 23.7 90 0.0019 28.0 3.3 28 365-392 55-82 (165)
166 PLN02189 cellulose synthase 23.2 71 0.0015 37.7 3.3 47 366-412 33-87 (1040)
167 PF06750 DiS_P_DiS: Bacterial 23.0 72 0.0016 26.6 2.5 38 367-413 33-70 (92)
168 PF05297 Herpes_LMP1: Herpesvi 22.6 29 0.00062 35.2 0.0 117 201-328 21-147 (381)
169 PF10367 Vps39_2: Vacuolar sor 22.3 48 0.001 27.2 1.3 25 399-423 76-100 (109)
170 COG3813 Uncharacterized protei 22.2 61 0.0013 26.2 1.7 30 386-417 28-57 (84)
171 KOG2113 Predicted RNA binding 21.9 67 0.0014 33.0 2.4 43 367-411 343-386 (394)
172 PF02318 FYVE_2: FYVE-type zin 21.5 1.1E+02 0.0024 26.4 3.4 43 366-409 53-102 (118)
173 COG0068 HypF Hydrogenase matur 20.3 69 0.0015 36.3 2.3 45 366-410 100-182 (750)
174 smart00064 FYVE Protein presen 20.1 65 0.0014 24.6 1.5 32 368-399 11-46 (68)
No 1
>KOG4638 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=1.5e-26 Score=229.13 Aligned_cols=299 Identities=23% Similarity=0.251 Sum_probs=200.0
Q ss_pred CCCCccceeeccccccccchhhHHhhhhhccccCCCccchhhhcccCCccccccCCCCCCCCCCCeeEEEEeeCCCCccC
Q 014069 26 SDNSRSYEVQLPAALNLFRSPLSLLLEYSRVMSTSQESEQDRLTVNADSEARGQTQLPNSALSTGEVSIQIIRQENGEAT 105 (431)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~i~~~~~~~~~ 105 (431)
...+++-+++ + +.|+||.|. .+++|.-+.+|.++++.++...+. .++-.+|||.||||+.++++++
T Consensus 22 ~~~~~~~s~~-a-~rs~Lqhs~---~~~tgss~~~~~Pqp~~ht~l~se---------~~~~~s~ev~~~i~s~sk~~ae 87 (371)
T KOG4638|consen 22 PHHPFHHSMQ-A-NRSQLQHSG---PPGTGSSEAAPTPQPCVHTLLTSE---------GSCPSSGEVHIQIISISKECAE 87 (371)
T ss_pred CCchhhhhhh-h-hhhhhccCC---CCCCCccCCCCCCCCCcccccccc---------CCCCcCCceeEEEecccccchh
Confidence 3445666773 3 588898887 799999998888876665554433 3477899999999999999988
Q ss_pred CCCCCC-------C--------CcccCCCCc--cCCccCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014069 106 GAGEDN-------E--------GNAIGEGET--VPLAASEGSTSREGSYQSYDIHQFARWVEQVLPFSLLLLVVFVRQHL 168 (431)
Q Consensus 106 ~~~~~~-------~--------~~~~~~~~~--~~~~~~~~~~~~~~~~q~~e~q~~~~wl~~~lPF~lILl~k~~~~H~ 168 (431)
++.+.+ . +++..+++. ++....++++.+ ++ |++|+|++++|.++++||++|+..||++||+
T Consensus 88 ~a~~~~lreg~Hs~a~g~~~~r~q~~~~s~~~~~e~~~~~s~~~d-nt-s~~ev~~~~s~~~~~lp~ifll~~~fv~dHl 165 (371)
T KOG4638|consen 88 NAMSRNLREGVHSCAHGCSNSRLQGLLGSERRLTEDLAAESGDLD-NT-SFSEVQYLFSWQQKILPFIFLLPVKFVMDHL 165 (371)
T ss_pred hhhhhhhccCcchhcccccchhhhcccCCcchhhhhhhccccccc-cc-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 777431 1 111111111 111222344333 33 7899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHhheeeeeeccCCcccccccCCCCCCCchHHHHHHH
Q 014069 169 QGFFVTVWITAVIFKSNDILRKQTALKGERKNYILFMIFIGFMFQVIGIYWWFRSDDILYPLLMIPPSTIPPFWHAVFII 248 (431)
Q Consensus 169 ~gi~~~i~l~~t~~~aN~~i~~qValk~~rk~~~l~~i~~~~~~~i~~vy~~f~~~~l~~~Li~l~p~~~~~~~~~lw~V 248 (431)
+||+++||+.++|+++|+.+|+||+++.++.+. +.+-..|...++.++|+|++.. |++|+-+++.
T Consensus 166 ~gi~~~ivl~~V~~~an~slk~qva~~~~~~~~--i~~~~~F~~~vv~~~~~fR~~s-------------p~~~~~~~i~ 230 (371)
T KOG4638|consen 166 TGIFLGIVLLTVFMYANKSLKNQVALLPKIILA--IKSKVKFLLVVVVTVWLFRSLS-------------PPDFHGLYIP 230 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeE--eeeeeeEEEEEeeeehHHHhcC-------------Ccchhheecc
Confidence 999999999999999999999999999998663 3334455667778888887533 2222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCccccccCcchhhHHHHHHHHHHHcCcchhhhhhhcchhhhHHHHHHHHHHHHH
Q 014069 249 LVNDTMVRQAAMAMKCLLLIYYKNGRGHNFRRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTF 328 (431)
Q Consensus 249 ~itd~ilr~i~i~lK~lil~l~~~~~~~~~~~~g~~l~~lE~~s~lyr~llpi~~w~~y~l~~~~g~lf~~ll~~lYl~~ 328 (431)
+.. +--+.....+-+.+ .+.....-.-++ +.-+++...+|+.+.+.++|+..+++..++.++..+...+++.+
T Consensus 231 ~~~--~s~F~~~~~vpi~l----sstc~s~~~~~~-~~kv~~~l~ly~sl~v~pv~~t~~~~~~~g~l~~~c~~l~rl~l 303 (371)
T KOG4638|consen 231 GDD--SSNFYFLGGVPIVL----SSTCKSFDICGR-VGKVRKALKLYCSLQVYPVRATGQQCTEAGDLCAICQALFRLPL 303 (371)
T ss_pred cCC--ccceeeeeeeEEEE----eeccCCcccccc-hhHHHHHHHHHhhcccCCceeEEeeHhHHHHHHHHHHHHHHhhH
Confidence 100 00011111111111 122222222233 46788999999999999999999999999999999999999998
Q ss_pred HHHHH-H------HHHHHHHHHHHHhhhhhhccCCCCchhh
Q 014069 329 KLTTV-V------DKVQSLFAAIRALSRKEVHYGSYATTEQ 362 (431)
Q Consensus 329 k~~~l-~------~r~~~~~~~lr~l~~~~~~~~~~at~eq 362 (431)
++..- + -+++.+..++..+.++...+++....++
T Consensus 304 ~llp~hll~~~~~~~v~~~fesis~fsrk~~~~~~y~l~~~ 344 (371)
T KOG4638|consen 304 ILLPQHLLKGHKKLEVEKIFESISVFSRKVGEVYRYSLSVK 344 (371)
T ss_pred HhhHHHHHhhCCCceEeehHHHHHHHHHhhhhheeeeeeeh
Confidence 86550 0 1122345556666666666555544443
No 2
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=9.7e-12 Score=124.42 Aligned_cols=79 Identities=33% Similarity=0.682 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCchhhhhccCCccccccccc-c------------cCEeecCCCccchhhHHHHh
Q 014069 332 TVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEKM-H------------APILLQCKHLFCEDCVSEWL 398 (431)
Q Consensus 332 ~l~~r~~~~~~~lr~l~~~~~~~~~~at~eq~~~~~d~C~IC~e~~-~------------~pv~L~CgHiFc~~Cl~~wl 398 (431)
.++++++.+.+.+|.-+..+.- .+.++.||+..+|..|.||++++ . .|++|||||++|..|++.|+
T Consensus 253 AL~~~i~~~~~~~r~~kdl~~~-~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ 331 (491)
T COG5243 253 ALFRRIREHARFRRATKDLNAM-YPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL 331 (491)
T ss_pred HHHHHHHHHHHHHHHhhHHHhh-cchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH
Confidence 4566777777777765544433 35678889988899999999995 3 34799999999999999999
Q ss_pred ccCCCCCCCcccc
Q 014069 399 ERERTCPLCRALV 411 (431)
Q Consensus 399 ~~~~tCPlCR~~i 411 (431)
+++++||.||.++
T Consensus 332 ERqQTCPICr~p~ 344 (491)
T COG5243 332 ERQQTCPICRRPV 344 (491)
T ss_pred HhccCCCcccCcc
Confidence 9999999999985
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8.1e-11 Score=118.85 Aligned_cols=62 Identities=34% Similarity=0.709 Sum_probs=51.5
Q ss_pred CcccccccccccC---EeecCCCccchhhHHHHhccCC-CCCCCccccCCCCCcccCCCCcccccc
Q 014069 368 DLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLERER-TCPLCRALVKPADLRSFGDGSTSLLFQ 429 (431)
Q Consensus 368 d~C~IC~e~~~~p---v~L~CgHiFc~~Cl~~wl~~~~-tCPlCR~~i~~~~l~~~~DGsts~~~q 429 (431)
+.|+||+|++++. +.|||+|.||..|+..|+.+.+ .||+|++.+.........+..|++..|
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~ 295 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQ 295 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccC
Confidence 5999999999876 4789999999999999998875 499999988766666666666666555
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.09 E-value=2.7e-11 Score=87.21 Aligned_cols=41 Identities=44% Similarity=1.169 Sum_probs=35.6
Q ss_pred Ccccccccccc---cCEeecCCCccchhhHHHHhccCCCCCCCc
Q 014069 368 DLCAICQEKMH---APILLQCKHLFCEDCVSEWLERERTCPLCR 408 (431)
Q Consensus 368 d~C~IC~e~~~---~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR 408 (431)
|+|+||++.+. ..+.++|+|.||.+|+.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 57999999995 346899999999999999999999999997
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.2e-11 Score=115.32 Aligned_cols=54 Identities=33% Similarity=0.863 Sum_probs=49.4
Q ss_pred hccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 364 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
.+.+..|.+|+|..++|..+||||+||+.||.+|...+..||+||..+.++++.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 345679999999999999999999999999999999999999999999888764
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.93 E-value=6.2e-10 Score=104.06 Aligned_cols=53 Identities=32% Similarity=0.822 Sum_probs=45.4
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc----------------CCCCCCCccccCCCCCcc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----------------ERTCPLCRALVKPADLRS 418 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----------------~~tCPlCR~~i~~~~l~~ 418 (431)
.+.+|+||++.+++|+.++|||.||..|+..|+.. ...||.||..+...++.+
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 34689999999999999999999999999999842 348999999998766543
No 7
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.2e-09 Score=117.81 Aligned_cols=61 Identities=33% Similarity=0.844 Sum_probs=50.3
Q ss_pred hhccCCccccccccccc-----CEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCcccCCCCcc
Q 014069 363 VNAAGDLCAICQEKMHA-----PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTS 425 (431)
Q Consensus 363 ~~~~~d~C~IC~e~~~~-----pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~~DGsts 425 (431)
....++.|+||+|.+.. +.+++|+|+||..|++.|++++.+||+||..+... +.|.....+
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~--~~~~~~~~~ 352 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDY--VLWQIAALQ 352 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcc--ccccccCCc
Confidence 56678899999999988 79999999999999999999999999999955433 344444433
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.92 E-value=9.4e-10 Score=106.51 Aligned_cols=47 Identities=40% Similarity=0.991 Sum_probs=41.1
Q ss_pred cCCcccccccccccC--------EeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAP--------ILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p--------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.+.+|+||++.+.++ +.++|+|.||..|+.+|+.++.+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 457999999987653 45689999999999999999999999999875
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.88 E-value=9.2e-10 Score=81.38 Aligned_cols=46 Identities=41% Similarity=1.061 Sum_probs=41.4
Q ss_pred CCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
+..|.||++...+.+.+||||. ||..|+.+|+++...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4579999999999999999999 999999999999999999999885
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.5e-09 Score=103.42 Aligned_cols=57 Identities=35% Similarity=0.848 Sum_probs=49.2
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhcc---CCCCCCCccccCCCCC-cccCCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER---ERTCPLCRALVKPADL-RSFGDGS 423 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~---~~tCPlCR~~i~~~~l-~~~~DGs 423 (431)
...|.||++.-++|+++.|||.||+.|+.+|++. .+.||.|+..+..+++ +.|..|+
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~ 107 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS 107 (230)
T ss_pred ceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence 4589999999999999999999999999999974 4578999999987765 4566666
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.84 E-value=2.5e-09 Score=82.03 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=46.2
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCcc
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 418 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~ 418 (431)
..|+||.+.+.+|+.++|||+||..|+..|+..+.+||.|+.++..+++.+
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence 469999999999999999999999999999988889999999987666543
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.84 E-value=1.7e-09 Score=86.55 Aligned_cols=43 Identities=49% Similarity=1.163 Sum_probs=35.7
Q ss_pred cCCcccccccccccC-------------EeecCCCccchhhHHHHhccCCCCCCCc
Q 014069 366 AGDLCAICQEKMHAP-------------ILLQCKHLFCEDCVSEWLERERTCPLCR 408 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p-------------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR 408 (431)
.++.|+||++.+.++ ...+|||.||..||.+|++...+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 356799999999322 3458999999999999999999999998
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.82 E-value=1.8e-09 Score=75.77 Aligned_cols=38 Identities=37% Similarity=1.255 Sum_probs=34.1
Q ss_pred ccccccccccC-EeecCCCccchhhHHHHhccCCCCCCC
Q 014069 370 CAICQEKMHAP-ILLQCKHLFCEDCVSEWLERERTCPLC 407 (431)
Q Consensus 370 C~IC~e~~~~p-v~L~CgHiFc~~Cl~~wl~~~~tCPlC 407 (431)
|+||++.+.+| +.++|||.||.+|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999998899988
No 14
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.81 E-value=2.7e-09 Score=76.50 Aligned_cols=38 Identities=34% Similarity=0.999 Sum_probs=30.8
Q ss_pred ccccccccccCEeecCCCccchhhHHHHhccC----CCCCCC
Q 014069 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLC 407 (431)
Q Consensus 370 C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~----~tCPlC 407 (431)
|+||++.+.+|+.++|||.||..|+.+|++.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999753 369987
No 15
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6e-08 Score=94.09 Aligned_cols=99 Identities=22% Similarity=0.483 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhhhhccCCccccccccccc----------CEeecCC
Q 014069 317 FSSLTTGLYLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHA----------PILLQCK 386 (431)
Q Consensus 317 f~~ll~~lYl~~k~~~l~~r~~~~~~~lr~l~~~~~~~~~~at~eq~~~~~d~C~IC~e~~~~----------pv~L~Cg 386 (431)
.+.++.++|...-..++.+-..+...+.-... ++..-.....++..|++|-..+.. .-+|.|+
T Consensus 181 i~~lfyglYyGvlgRdfa~icsd~mAs~iGfY-------s~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCn 253 (328)
T KOG1734|consen 181 ISFLFYGLYYGVLGRDFAEICSDYMASTIGFY-------SPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN 253 (328)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhccc-------CCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecc
Confidence 34566677777666666665555554433322 211112223456799999876632 3489999
Q ss_pred CccchhhHHHHhc--cCCCCCCCccccCCCCC--cccCCC
Q 014069 387 HLFCEDCVSEWLE--RERTCPLCRALVKPADL--RSFGDG 422 (431)
Q Consensus 387 HiFc~~Cl~~wl~--~~~tCPlCR~~i~~~~l--~~~~DG 422 (431)
|+||+.|++.|.- .+++||.|+..+..+.. ++|...
T Consensus 254 HvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsnpWekp 293 (328)
T KOG1734|consen 254 HVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSNPWEKP 293 (328)
T ss_pred cchHHHhhhhheeecCCCCCchHHHHhhHhhhccCccccc
Confidence 9999999999974 57799999887754432 345543
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.64 E-value=2.3e-08 Score=70.22 Aligned_cols=43 Identities=44% Similarity=1.259 Sum_probs=37.1
Q ss_pred cccccccccccCEeec-CCCccchhhHHHHhcc-CCCCCCCcccc
Q 014069 369 LCAICQEKMHAPILLQ-CKHLFCEDCVSEWLER-ERTCPLCRALV 411 (431)
Q Consensus 369 ~C~IC~e~~~~pv~L~-CgHiFc~~Cl~~wl~~-~~tCPlCR~~i 411 (431)
.|+||++.+.++..++ |+|.||..|+..|++. ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999997776555 9999999999999987 77899998753
No 17
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.4e-08 Score=93.22 Aligned_cols=49 Identities=27% Similarity=0.810 Sum_probs=43.3
Q ss_pred CcccccccccccC--EeecCCCccchhhHHHHhccCCCCCCCccccCCCCC
Q 014069 368 DLCAICQEKMHAP--ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 416 (431)
Q Consensus 368 d~C~IC~e~~~~p--v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l 416 (431)
..|+||++.+.+. +.+.|||+||..|+...++....||+||+.|..+++
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~ 182 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQF 182 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhh
Confidence 5899999998765 458999999999999999999999999998876653
No 18
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=2.3e-08 Score=103.39 Aligned_cols=52 Identities=35% Similarity=0.834 Sum_probs=46.5
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 416 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l 416 (431)
+....|+||++.+..|+.++|+|.||..|+..|+.....||.||..+...++
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L 75 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL 75 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence 4566999999999999999999999999999999988899999998875544
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.56 E-value=3.1e-08 Score=69.86 Aligned_cols=38 Identities=53% Similarity=1.356 Sum_probs=35.2
Q ss_pred ccccccccccCE-eecCCCccchhhHHHHhc--cCCCCCCC
Q 014069 370 CAICQEKMHAPI-LLQCKHLFCEDCVSEWLE--RERTCPLC 407 (431)
Q Consensus 370 C~IC~e~~~~pv-~L~CgHiFc~~Cl~~wl~--~~~tCPlC 407 (431)
|+||++.+.++. .++|||.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 899999999999999998 46689988
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.53 E-value=4.2e-08 Score=93.13 Aligned_cols=47 Identities=32% Similarity=0.907 Sum_probs=38.3
Q ss_pred cCCccccccccccc---------CEeecCCCccchhhHHHHhcc------CCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHA---------PILLQCKHLFCEDCVSEWLER------ERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~---------pv~L~CgHiFc~~Cl~~wl~~------~~tCPlCR~~i~ 412 (431)
.+.+|+||+|...+ ++..+|+|.||..|+..|.+. ..+||+||..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 36789999998632 356799999999999999974 246999999875
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.49 E-value=9.8e-08 Score=64.63 Aligned_cols=38 Identities=45% Similarity=1.362 Sum_probs=34.9
Q ss_pred ccccccccccCEeecCCCccchhhHHHHhc-cCCCCCCC
Q 014069 370 CAICQEKMHAPILLQCKHLFCEDCVSEWLE-RERTCPLC 407 (431)
Q Consensus 370 C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~-~~~tCPlC 407 (431)
|+||++....++.++|+|.||..|+..|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889999988999999999999999999998 56679987
No 22
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=7.1e-08 Score=94.96 Aligned_cols=47 Identities=38% Similarity=0.912 Sum_probs=40.7
Q ss_pred CCcccccccccccC---EeecCCCccchhhHHHHhc-cCCCCCCCccccCC
Q 014069 367 GDLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKP 413 (431)
Q Consensus 367 ~d~C~IC~e~~~~p---v~L~CgHiFc~~Cl~~wl~-~~~tCPlCR~~i~~ 413 (431)
+-+|+||++++.+. +.|||+|.||..|+..|+. -+..||.||.++++
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 45899999998644 4789999999999999997 57789999999874
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.7e-08 Score=101.03 Aligned_cols=52 Identities=31% Similarity=0.811 Sum_probs=46.4
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhcc-----CCCCCCCccccCCCCCcc
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-----ERTCPLCRALVKPADLRS 418 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-----~~tCPlCR~~i~~~~l~~ 418 (431)
+..|+||++....|+.+.|||+||..||.+++.. ...||+||..|..+++.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 7799999999999999999999999999999864 358999999998877653
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=5.7e-08 Score=94.20 Aligned_cols=52 Identities=38% Similarity=0.869 Sum_probs=45.9
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHH-HhccCCC-CCCCccccCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSE-WLERERT-CPLCRALVKPADL 416 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~-wl~~~~t-CPlCR~~i~~~~l 416 (431)
..+..|+||++....|..++|||+||..|+.. |-.++.. ||+||+.+..+++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 34678999999999999999999999999999 8776665 9999999887765
No 25
>KOG4638 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=1.7e-10 Score=115.46 Aligned_cols=237 Identities=19% Similarity=0.193 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHh--heeeeeeccC
Q 014069 147 RWVEQVLPFSLLLLVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTALKGERKNYILFMIFIGFMFQV--IGIYWWFRSD 224 (431)
Q Consensus 147 ~wl~~~lPF~lILl~k~~~~H~~gi~~~i~l~~t~~~aN~~i~~qValk~~rk~~~l~~i~~~~~~~i--~~vy~~f~~~ 224 (431)
-|...-+|+.++.+.|-+.+|..+..+-.+ .-++.++|...|.|..++.+|+.....+..-.-..+. --+.+.|...
T Consensus 68 ~~~s~ev~~~i~s~sk~~ae~a~~~~lreg-~Hs~a~g~~~~r~q~~~~s~~~~~e~~~~~s~~~dnts~~ev~~~~s~~ 146 (371)
T KOG4638|consen 68 CPSSGEVHIQIISISKECAENAMSRNLREG-VHSCAHGCSNSRLQGLLGSERRLTEDLAAESGDLDNTSFSEVQYLFSWQ 146 (371)
T ss_pred CCcCCceeEEEecccccchhhhhhhhhccC-cchhcccccchhhhcccCCcchhhhhhhccccccccchHHHHHHHHHHH
Confidence 355556788899999999999999977777 6677789999999999999999999998876666665 4555677788
Q ss_pred CcccccccCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCcchhhHHHHHHHHHHHcCcch
Q 014069 225 DILYPLLMIPPS-TIPPFWHAVFIILVNDTMVRQAAMAMKCLLLIYYKNGRGHNFRRQGQILTLVEYALLLYRALLPTPV 303 (431)
Q Consensus 225 ~l~~~Li~l~p~-~~~~~~~~lw~V~itd~ilr~i~i~lK~lil~l~~~~~~~~~~~~g~~l~~lE~~s~lyr~llpi~~ 303 (431)
..+.|+|++-+. ...+...-+|.+++.++++..+..++|+.+...+++. ..-..++..+..++.+.++||...|+..
T Consensus 147 ~~~lp~ifll~~~fv~dHl~gi~~~ivl~~V~~~an~slk~qva~~~~~~--~~i~~~~~F~~~vv~~~~~fR~~sp~~~ 224 (371)
T KOG4638|consen 147 QKILPFIFLLPVKFVMDHLTGIFLGIVLLTVFMYANKSLKNQVALLPKII--LAIKSKVKFLLVVVVTVWLFRSLSPPDF 224 (371)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe--eEeeeeeeEEEEEeeeehHHHhcCCcch
Confidence 888999987664 4678899999999999999999999999999888642 1234567788899999999999999999
Q ss_pred hhhhhhcchhhh-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCchhhhhccCCcccccccccccCE
Q 014069 304 WYRFFLNKDYGS-LF-SSLTTGLYLTFKLTTVVDKVQSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHAPI 381 (431)
Q Consensus 304 w~~y~l~~~~g~-lf-~~ll~~lYl~~k~~~l~~r~~~~~~~lr~l~~~~~~~~~~at~eq~~~~~d~C~IC~e~~~~pv 381 (431)
|+.|......+. ++ ..+.+.++-.++......+.-...+.++..+. -..++..++-.+..+.++.|.+|+..++.+.
T Consensus 225 ~~~~i~~~~~s~F~~~~~vpi~lsstc~s~~~~~~~~kv~~~l~ly~s-l~v~pv~~t~~~~~~~g~l~~~c~~l~rl~l 303 (371)
T KOG4638|consen 225 HGLYIPGDDSSNFYFLGGVPIVLSSTCKSFDICGRVGKVRKALKLYCS-LQVYPVRATGQQCTEAGDLCAICQALFRLPL 303 (371)
T ss_pred hheecccCCccceeeeeeeEEEEeeccCCcccccchhHHHHHHHHHhh-cccCCceeEEeeHhHHHHHHHHHHHHHHhhH
Confidence 998887533221 00 11122233344444444444444444443332 2356677777788888999999999999998
Q ss_pred eecCCC
Q 014069 382 LLQCKH 387 (431)
Q Consensus 382 ~L~CgH 387 (431)
.+-|.|
T Consensus 304 ~llp~h 309 (371)
T KOG4638|consen 304 ILLPQH 309 (371)
T ss_pred HhhHHH
Confidence 877754
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.41 E-value=7.6e-08 Score=95.92 Aligned_cols=51 Identities=35% Similarity=0.854 Sum_probs=47.8
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCcc
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 418 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~ 418 (431)
..|-||.+.|..|+.+||+|.||..||+..+..+..||.|+.++.+.+++.
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~ 74 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRN 74 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhh
Confidence 479999999999999999999999999999999999999999998887763
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.39 E-value=1.9e-07 Score=67.27 Aligned_cols=41 Identities=41% Similarity=1.043 Sum_probs=35.6
Q ss_pred ccccccccc---ccCEeecCCCccchhhHHHHhccCCCCCCCcc
Q 014069 369 LCAICQEKM---HAPILLQCKHLFCEDCVSEWLERERTCPLCRA 409 (431)
Q Consensus 369 ~C~IC~e~~---~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~ 409 (431)
.|.+|++.+ ..+..++|||+||..|+..+......||.||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999999 34578999999999999999866779999985
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.38 E-value=1.7e-07 Score=74.81 Aligned_cols=51 Identities=31% Similarity=0.577 Sum_probs=41.7
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhcc-CCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l~ 417 (431)
...|+||.+.|.+|+.++|||.|+..|+..|+.+ ..+||+|+.++...++.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~ 55 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI 55 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE
T ss_pred ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce
Confidence 4579999999999999999999999999999998 88999999999876654
No 29
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.30 E-value=4.3e-07 Score=74.45 Aligned_cols=48 Identities=33% Similarity=0.871 Sum_probs=38.2
Q ss_pred cCCccccccccccc------------C-EeecCCCccchhhHHHHhcc---CCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHA------------P-ILLQCKHLFCEDCVSEWLER---ERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~------------p-v~L~CgHiFc~~Cl~~wl~~---~~tCPlCR~~i~~ 413 (431)
.++.|.||+..+.. | +.-.|+|.||..||.+|+++ +..||+||++...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 37789999988752 1 23379999999999999985 4689999998753
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.29 E-value=2.6e-07 Score=90.52 Aligned_cols=51 Identities=31% Similarity=0.681 Sum_probs=45.8
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
-..|-||.+.+..|+.++|||.||..||+..+..+..||.||.+..+.-++
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr 75 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLR 75 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcc
Confidence 358999999999999999999999999999999999999999987654443
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.27 E-value=3.6e-07 Score=65.87 Aligned_cols=30 Identities=40% Similarity=1.204 Sum_probs=21.4
Q ss_pred cccccccccc----CEeecCCCccchhhHHHHhcc
Q 014069 370 CAICQEKMHA----PILLQCKHLFCEDCVSEWLER 400 (431)
Q Consensus 370 C~IC~e~~~~----pv~L~CgHiFc~~Cl~~wl~~ 400 (431)
|+||.| +.+ |+.|+|||+||++|+..+.+.
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 877 899999999999999999974
No 32
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.9e-05 Score=82.33 Aligned_cols=49 Identities=29% Similarity=0.857 Sum_probs=39.1
Q ss_pred ccCCccccccccccc-----------------CEeecCCCccchhhHHHHhc-cCCCCCCCccccCC
Q 014069 365 AAGDLCAICQEKMHA-----------------PILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKP 413 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~-----------------pv~L~CgHiFc~~Cl~~wl~-~~~tCPlCR~~i~~ 413 (431)
+....|+||+....- =..+||.|+||..|+.+|++ .+-.||.||++++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 345689999987631 12469999999999999999 45599999999863
No 33
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.3e-06 Score=95.39 Aligned_cols=51 Identities=33% Similarity=0.896 Sum_probs=46.5
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhc-cCCCCCCCccccCCCCCcc
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKPADLRS 418 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~-~~~tCPlCR~~i~~~~l~~ 418 (431)
..|+.|....++.+.+.|+|+||..|+.+.+. +++.||.|.+.+...|+..
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 48999999999999999999999999999996 5789999999999888754
No 34
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.1e-06 Score=86.67 Aligned_cols=48 Identities=29% Similarity=0.877 Sum_probs=44.1
Q ss_pred ccCCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
+.+.+|.||+.+.++.+.|||.|. .|..|......+++.||+||+++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 446799999999999999999999 999999988778899999999986
No 35
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8.7e-07 Score=66.38 Aligned_cols=47 Identities=34% Similarity=0.759 Sum_probs=41.3
Q ss_pred cCCcccccccccccCEeecCCCc-cchhhHHHHhc-cCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLE-RERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~-~~~tCPlCR~~i~ 412 (431)
.+++|.||+|...+.+.-.|||+ .|.+|-.+.++ .+..||+||++++
T Consensus 6 ~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 45899999999999999999999 89999877666 5779999999985
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.3e-06 Score=79.89 Aligned_cols=45 Identities=38% Similarity=0.915 Sum_probs=40.3
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCcc
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRA 409 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~ 409 (431)
.....|+||++.+.+|..++|+|.||..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 345689999999999999999999999999999986668999993
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.3e-06 Score=82.63 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=42.5
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhcc-CCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~ 414 (431)
..+|+||+.....|+.++|+|.||..|+..-... +.+|++||.++.+.
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 4689999999999999999999999999988765 45799999999743
No 38
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.86 E-value=4e-06 Score=65.10 Aligned_cols=49 Identities=29% Similarity=0.839 Sum_probs=26.2
Q ss_pred CcccccccccccCE-eecCCCccchhhHHHHhccCCCCCCCccccCCCCCcc
Q 014069 368 DLCAICQEKMHAPI-LLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 418 (431)
Q Consensus 368 d~C~IC~e~~~~pv-~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~ 418 (431)
..|++|.+.+++|+ ...|.|+||..|+..-+.. .||.|+.+.-.+|++.
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~ 57 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQI 57 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B-S-SS---
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHh
Confidence 47999999999998 4699999999999885553 4999999987777664
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=1.2e-05 Score=80.60 Aligned_cols=51 Identities=27% Similarity=0.723 Sum_probs=39.1
Q ss_pred CCcccccccc-cccCE----eecCCCccchhhHHHHhcc-CCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEK-MHAPI----LLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~-~~~pv----~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l~ 417 (431)
+..|++|... +.+|. ..+|||.||..|+...+.. ...||.|+.++..++++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 4689999985 33332 2279999999999997644 55899999999877644
No 40
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0003 Score=69.02 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=42.3
Q ss_pred hhhhccCCcccccccccccCEe-ecCCCccchhhHHHHhcc--CCCCCCCccccC
Q 014069 361 EQVNAAGDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLER--ERTCPLCRALVK 412 (431)
Q Consensus 361 eq~~~~~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~--~~tCPlCR~~i~ 412 (431)
......+.+|++|.+....|-. .+|+|+||..|+..-... ..+||.|..+..
T Consensus 233 ss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 233 SSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3445567799999999999964 569999999999987754 479999988765
No 41
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.46 E-value=8.2e-05 Score=60.06 Aligned_cols=29 Identities=34% Similarity=0.887 Sum_probs=27.0
Q ss_pred cCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 384 QCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 384 ~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.|+|.||..||.+|+..+..||++|++..
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 59999999999999999999999998764
No 42
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.6e-05 Score=61.58 Aligned_cols=46 Identities=30% Similarity=0.837 Sum_probs=35.1
Q ss_pred CCcccccccccccC---Eee----------cCCCccchhhHHHHhcc---CCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAP---ILL----------QCKHLFCEDCVSEWLER---ERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~p---v~L----------~CgHiFc~~Cl~~wl~~---~~tCPlCR~~i~ 412 (431)
++.|-||+-.|... .++ .|.|.||..|+.+|+.. +..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45888888777431 122 49999999999999964 458999998764
No 43
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=8.8e-05 Score=77.13 Aligned_cols=49 Identities=31% Similarity=0.830 Sum_probs=44.9
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
..+..|.||...+..|+.+||||.||..|+.+-+.++..||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 4567899999999999999999999999999988988999999998863
No 44
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.36 E-value=5.7e-05 Score=83.80 Aligned_cols=46 Identities=30% Similarity=0.815 Sum_probs=37.3
Q ss_pred CCcccccccccc-------cCEeecCCCccchhhHHHHhcc--CCCCCCCccccC
Q 014069 367 GDLCAICQEKMH-------APILLQCKHLFCEDCVSEWLER--ERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~-------~pv~L~CgHiFc~~Cl~~wl~~--~~tCPlCR~~i~ 412 (431)
-++|+||...+. ......|+|.||..|+..|+.. ..+||+||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 358999998664 2345579999999999999975 568999998775
No 45
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.26 E-value=0.00018 Score=53.20 Aligned_cols=40 Identities=25% Similarity=1.033 Sum_probs=32.1
Q ss_pred ccccccc--ccccCEeecCC-----CccchhhHHHHhcc--CCCCCCCc
Q 014069 369 LCAICQE--KMHAPILLQCK-----HLFCEDCVSEWLER--ERTCPLCR 408 (431)
Q Consensus 369 ~C~IC~e--~~~~pv~L~Cg-----HiFc~~Cl~~wl~~--~~tCPlCR 408 (431)
.|.||++ +-.++...||. |.+|..|+.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 34566788986 88999999999964 45899994
No 46
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.25 E-value=0.00011 Score=75.13 Aligned_cols=47 Identities=36% Similarity=0.978 Sum_probs=41.2
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhcc--CCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLER--ERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~--~~tCPlCR~~i~~~ 414 (431)
..|-||-|.-++-..=||||..|..|+..|-.. ..+||.||.+|+-.
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 379999999888888899999999999999854 56899999998743
No 47
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.21 E-value=0.00011 Score=68.78 Aligned_cols=45 Identities=27% Similarity=0.758 Sum_probs=41.1
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCcccc
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALV 411 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i 411 (431)
...|.||..+++.|+.+.|||.||..|...-++....|-.|.+..
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 348999999999999999999999999999998899999997654
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00017 Score=73.64 Aligned_cols=47 Identities=32% Similarity=0.954 Sum_probs=38.6
Q ss_pred cCCcccccccccccCE--------eecCCCccchhhHHHHh--cc-----CCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPI--------LLQCKHLFCEDCVSEWL--ER-----ERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv--------~L~CgHiFc~~Cl~~wl--~~-----~~tCPlCR~~i~ 412 (431)
.+.+|.||++...+.. ..+|.|.||..|++.|- .+ .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4678999999876554 36799999999999998 34 478999998764
No 49
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.17 E-value=0.00042 Score=73.15 Aligned_cols=50 Identities=30% Similarity=0.731 Sum_probs=42.4
Q ss_pred hccCCcccccccccccCEeecCCCccchhhHHHHhcc-----CCCCCCCccccCC
Q 014069 364 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-----ERTCPLCRALVKP 413 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-----~~tCPlCR~~i~~ 413 (431)
+..+-+|.+|.+.-++++...|.|.||..|+.++... .-+||.|...+..
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 3345589999999999999999999999999998863 4589999887753
No 50
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.17 E-value=8.4e-05 Score=59.05 Aligned_cols=45 Identities=29% Similarity=0.619 Sum_probs=23.3
Q ss_pred Ccccccccccc-c---CE----eecCCCccchhhHHHHhcc---C--------CCCCCCccccC
Q 014069 368 DLCAICQEKMH-A---PI----LLQCKHLFCEDCVSEWLER---E--------RTCPLCRALVK 412 (431)
Q Consensus 368 d~C~IC~e~~~-~---pv----~L~CgHiFc~~Cl~~wl~~---~--------~tCPlCR~~i~ 412 (431)
.+|.||++... + |. ...|++.||..|+.+|+.. . .+||.|++++.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999998764 2 22 1279999999999999963 1 26999999875
No 51
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.04 E-value=0.00022 Score=73.97 Aligned_cols=43 Identities=30% Similarity=0.903 Sum_probs=36.4
Q ss_pred CcccccccccccCE----eecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 368 DLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 368 d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.+|++|+|.|...+ ...|.|.||..|+..|.. .+||.||-...
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 48999999997664 568999999999999965 58999987655
No 52
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00036 Score=71.26 Aligned_cols=44 Identities=30% Similarity=0.860 Sum_probs=32.1
Q ss_pred CcccccccccccCE----eecCCCccchhhHHHHhcc---CCCCCCCcccc
Q 014069 368 DLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLER---ERTCPLCRALV 411 (431)
Q Consensus 368 d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~~---~~tCPlCR~~i 411 (431)
..|.||-+-..... .-.|||+||..|+.+|+.. .++||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 47999944333222 2359999999999999975 35899998443
No 53
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00013 Score=73.64 Aligned_cols=48 Identities=29% Similarity=0.728 Sum_probs=39.9
Q ss_pred CCcccccccccccCEe-ecCCCccchhhHHHHhcc-CCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLER-ERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~ 414 (431)
+..|+||++.++.... -.|.|.||.+|+..-+.. .+.||.||+.+..+
T Consensus 43 ~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 4589999999987764 479999999999888765 66899999987643
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.88 E-value=0.00046 Score=71.96 Aligned_cols=54 Identities=31% Similarity=0.759 Sum_probs=47.1
Q ss_pred ccCCcccccccccccCEe-ecCCCccchhhHHHHhccCCCCCCCccccCCCCCcc
Q 014069 365 AAGDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 418 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~ 418 (431)
..+..|++|...+.+|+. +.|||.||..|+..|+..+..||.|+..+...+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 445789999999999998 599999999999999999999999998887665443
No 55
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00033 Score=69.37 Aligned_cols=47 Identities=26% Similarity=0.660 Sum_probs=42.5
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
..+.|-||...+..|+++.|+|.||..|-..-++....|++|.+...
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence 34679999999999999999999999999999988899999977654
No 56
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00048 Score=70.82 Aligned_cols=50 Identities=34% Similarity=0.914 Sum_probs=40.2
Q ss_pred cCCcccccccccccC-----EeecCCCccchhhHHHHhcc--CCCCCCCccccCCCC
Q 014069 366 AGDLCAICQEKMHAP-----ILLQCKHLFCEDCVSEWLER--ERTCPLCRALVKPAD 415 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p-----v~L~CgHiFc~~Cl~~wl~~--~~tCPlCR~~i~~~~ 415 (431)
.+..|+||++.+..+ +.+.|||.|..+|++.|+.+ .+.||.|...-...+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~ 59 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQ 59 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHH
Confidence 467999999998766 46899999999999999953 458999976544333
No 57
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0012 Score=66.94 Aligned_cols=48 Identities=25% Similarity=0.665 Sum_probs=44.2
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.+++.|+||.....+.+..||+|.-|..||.+-+...+.|-.|+..+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 456799999999999999999999999999999999999999998775
No 58
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.0015 Score=63.25 Aligned_cols=60 Identities=17% Similarity=0.436 Sum_probs=53.6
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHHHhccCCCCCCCccccCCCCCcccCCCCccc
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTSL 426 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~~DGsts~ 426 (431)
...|++|.+.+.+.. .-+|||++|.+|+...+.....||+|-.++++.|+...+.|.|-+
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGGTGf 284 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGGTGF 284 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeecccccc
Confidence 458999999998753 559999999999999999999999999999999999999998754
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.50 E-value=0.0013 Score=50.22 Aligned_cols=41 Identities=22% Similarity=0.660 Sum_probs=29.2
Q ss_pred cCCcccccccccccCEe-ecCCCccchhhHHHHhcc--CCCCCC
Q 014069 366 AGDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLER--ERTCPL 406 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~--~~tCPl 406 (431)
....|+|.+..+++|++ ..|+|+|..+.+.+|+++ ...||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35689999999999987 499999999999999943 457998
No 60
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.45 E-value=0.00072 Score=74.15 Aligned_cols=35 Identities=31% Similarity=0.733 Sum_probs=30.2
Q ss_pred eecCCCccchhhHHHHhccCCCCCCCccccCCCCC
Q 014069 382 LLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 416 (431)
Q Consensus 382 ~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l 416 (431)
.-+|+|.||..|+..|-.-..+||+||..+..-.+
T Consensus 141 ~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 141 EKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred ccccccccHHHHhhhhhhhcccCchhhhhhheeee
Confidence 34799999999999999999999999998865443
No 61
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.42 E-value=0.0025 Score=63.23 Aligned_cols=44 Identities=32% Similarity=0.842 Sum_probs=37.3
Q ss_pred CcccccccccccCEee-cCCCccchhhHHHHh-ccCCCCCCC-cccc
Q 014069 368 DLCAICQEKMHAPILL-QCKHLFCEDCVSEWL-ERERTCPLC-RALV 411 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl-~~~~tCPlC-R~~i 411 (431)
..|+.|...+.+|.++ .|+|.||++|+...+ +....||.| |+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdv 321 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDV 321 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccc
Confidence 5799999999999988 578999999999877 457799999 4443
No 62
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0029 Score=64.39 Aligned_cols=43 Identities=28% Similarity=0.872 Sum_probs=34.3
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.+.|.||.++..+.+.+||||+-| |..-- +.-.+||.||..+.
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 468999999999999999999966 55332 33456999999875
No 63
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0016 Score=55.11 Aligned_cols=27 Identities=37% Similarity=0.887 Sum_probs=25.0
Q ss_pred cCCCccchhhHHHHhccCCCCCCCccc
Q 014069 384 QCKHLFCEDCVSEWLERERTCPLCRAL 410 (431)
Q Consensus 384 ~CgHiFc~~Cl~~wl~~~~tCPlCR~~ 410 (431)
.|+|.||..|+.+|+++...||+|.++
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 599999999999999999999999654
No 64
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.06 E-value=0.0049 Score=63.28 Aligned_cols=45 Identities=36% Similarity=0.807 Sum_probs=36.0
Q ss_pred ccCCcccccccccccC----EeecCCCccchhhHHHHhcc--CCCCCCCcc
Q 014069 365 AAGDLCAICQEKMHAP----ILLQCKHLFCEDCVSEWLER--ERTCPLCRA 409 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~p----v~L~CgHiFc~~Cl~~wl~~--~~tCPlCR~ 409 (431)
+.+..|-.|-+.+-.. .-|||.|+||..|+.+.+.+ .++||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3456899999876422 36899999999999999965 558999994
No 65
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.98 E-value=0.0018 Score=65.23 Aligned_cols=48 Identities=25% Similarity=0.791 Sum_probs=42.4
Q ss_pred CCcccccccccccCE-eecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAPI-LLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv-~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
-..|.+|...+.++. ..-|=|.||..||...+.....||+|...+...
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 358999999999886 568999999999999999999999998887644
No 66
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0015 Score=64.58 Aligned_cols=42 Identities=33% Similarity=0.905 Sum_probs=36.4
Q ss_pred CCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
+..|+||++...+.+.|+|||. -|.+|-.. ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 5689999999999999999998 78888644 458999999875
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0038 Score=64.51 Aligned_cols=56 Identities=27% Similarity=0.584 Sum_probs=40.4
Q ss_pred cCCCCchhhhhccCCcccccccccccC---EeecCCCccchhhHHHHhcc--------CCCCCCCcc
Q 014069 354 YGSYATTEQVNAAGDLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLER--------ERTCPLCRA 409 (431)
Q Consensus 354 ~~~~at~eq~~~~~d~C~IC~e~~~~p---v~L~CgHiFc~~Cl~~wl~~--------~~tCPlCR~ 409 (431)
++..++.++.......|.||.++..-. +.+||+|+||..|+..++.. .-.||-|..
T Consensus 171 ~deea~~~~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 171 FDEEATLEKFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hhHHHHHHHHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 333445555666677999999987542 58999999999999999853 236766543
No 68
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.64 E-value=0.0074 Score=61.13 Aligned_cols=55 Identities=24% Similarity=0.602 Sum_probs=44.8
Q ss_pred CCchhhhhccCCcccccccccccCEeecCCCccchhhHHHH--hccCCCCCCCcccc
Q 014069 357 YATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEW--LERERTCPLCRALV 411 (431)
Q Consensus 357 ~at~eq~~~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~w--l~~~~tCPlCR~~i 411 (431)
.+++++.++++..|.||-+...-..++||+|..|--|-.+. +..++.||+||..-
T Consensus 51 tsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 44555666677799999999998899999999999997653 45688999999853
No 69
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.62 E-value=0.0049 Score=68.43 Aligned_cols=47 Identities=30% Similarity=0.890 Sum_probs=40.0
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhcc--CCCCCCCccccCCCC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLER--ERTCPLCRALVKPAD 415 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~--~~tCPlCR~~i~~~~ 415 (431)
..|.+|.+ ...++..+|+|.||.+|+..-++. ...||.||..+..++
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 777889999999999999998865 336999999876544
No 70
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.47 E-value=0.0076 Score=45.60 Aligned_cols=47 Identities=30% Similarity=0.710 Sum_probs=37.9
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
...|..|...-...+++||+|..|..|... ++-+.||+|.+++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 346888888888889999999999999654 45678999999886543
No 71
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.20 E-value=0.017 Score=52.75 Aligned_cols=56 Identities=16% Similarity=0.608 Sum_probs=40.2
Q ss_pred hccCCcccccccccccCEeecCCC-----ccchhhHHHHhcc--CCCCCCCccccC----CCCCcccC
Q 014069 364 NAAGDLCAICQEKMHAPILLQCKH-----LFCEDCVSEWLER--ERTCPLCRALVK----PADLRSFG 420 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~pv~L~CgH-----iFc~~Cl~~wl~~--~~tCPlCR~~i~----~~~l~~~~ 420 (431)
...+..|-||++...+ ...||.. .-|.+|+.+|+.. ...|++|+.+.. .+.++.|+
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~kpl~~W~ 71 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNYKKCTKWR 71 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEecCCCcccc
Confidence 3456799999998653 3467765 3599999999975 558999988763 33445553
No 72
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.01 E-value=0.032 Score=57.51 Aligned_cols=75 Identities=20% Similarity=0.535 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhhhhccCCCCchhhhhccCCcccccccccccCEee-----------------c-----CCCccchhhHH
Q 014069 338 QSLFAAIRALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHAPILL-----------------Q-----CKHLFCEDCVS 395 (431)
Q Consensus 338 ~~~~~~lr~l~~~~~~~~~~at~eq~~~~~d~C~IC~e~~~~pv~L-----------------~-----CgHiFc~~Cl~ 395 (431)
.+|+...+..-.++..|..+ +..++.+.|.-|+....+-+.. + |..+.|.+|+-
T Consensus 246 drF~e~F~~~V~~Np~y~~~----~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~ 321 (358)
T PF10272_consen 246 DRFVEAFKEQVEQNPRYSYP----ESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMG 321 (358)
T ss_pred HHHHHHHHHHHHhCCccccC----CCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHH
Confidence 34444444443344444333 2223456788898754332211 2 55678999999
Q ss_pred HHhcc-------------CCCCCCCccccCCCCC
Q 014069 396 EWLER-------------ERTCPLCRALVKPADL 416 (431)
Q Consensus 396 ~wl~~-------------~~tCPlCR~~i~~~~l 416 (431)
+|+.. +.+||+||+.+.-.|+
T Consensus 322 kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 322 KWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred HHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 99942 3489999999876554
No 73
>PHA02862 5L protein; Provisional
Probab=94.99 E-value=0.018 Score=51.81 Aligned_cols=45 Identities=22% Similarity=0.665 Sum_probs=35.4
Q ss_pred CCcccccccccccCEeecCC-----CccchhhHHHHhcc--CCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPILLQCK-----HLFCEDCVSEWLER--ERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~Cg-----HiFc~~Cl~~wl~~--~~tCPlCR~~i~ 412 (431)
++.|-||++.-.+. .-||+ ..-|++|+.+|++. +..||+|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 57899999986554 46775 35799999999964 558999998764
No 74
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.79 E-value=0.015 Score=67.57 Aligned_cols=48 Identities=33% Similarity=0.790 Sum_probs=38.3
Q ss_pred ccCCcccccccccc---cCEeecCCCccchhhHHHHhcc----------CCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMH---APILLQCKHLFCEDCVSEWLER----------ERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~---~pv~L~CgHiFc~~Cl~~wl~~----------~~tCPlCR~~i~ 412 (431)
+.+|.|.||..+-- ..++|.|+|+||..|.+..+++ --+||+|..++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 35789999997642 3478999999999999988764 238999988775
No 75
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.08 Score=53.54 Aligned_cols=48 Identities=21% Similarity=0.594 Sum_probs=40.8
Q ss_pred cCCcccccccccccCEeec-CCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHAPILLQ-CKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~-CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
+...|++|+....+|..+. -|-+||..|+..++.....||.-..+..-
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASV 347 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchH
Confidence 4569999999999997665 49999999999999999999987666543
No 76
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.36 E-value=0.014 Score=56.70 Aligned_cols=44 Identities=32% Similarity=0.841 Sum_probs=30.4
Q ss_pred cccccccccc-cC-EeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 369 LCAICQEKMH-AP-ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 369 ~C~IC~e~~~-~p-v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
.|--|.---. .+ -++.|+|+||..|...- ....||+|+++++..
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence 3555554333 33 36799999999998653 233999999997644
No 77
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.047 Score=61.05 Aligned_cols=40 Identities=25% Similarity=0.817 Sum_probs=35.0
Q ss_pred CcccccccccccCE-eecCCCccchhhHHHHhccCCCCCCCccc
Q 014069 368 DLCAICQEKMHAPI-LLQCKHLFCEDCVSEWLERERTCPLCRAL 410 (431)
Q Consensus 368 d~C~IC~e~~~~pv-~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~ 410 (431)
..|..|-..+.-|. ...|||.||..|+. +....||.|+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 48999999999885 67999999999998 667899999873
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.76 E-value=0.059 Score=53.18 Aligned_cols=56 Identities=18% Similarity=0.500 Sum_probs=43.5
Q ss_pred ccCCcccccccccccC----EeecCCCccchhhHHHHhccCCCCCCCccccCCCCCcccCC
Q 014069 365 AAGDLCAICQEKMHAP----ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGD 421 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~p----v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~~D 421 (431)
.....|||+...|... ..-+|||+|++.++.+.- ....||.|-.++...|+....+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 3445899999998543 245999999999999973 4568999999999887765443
No 79
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.57 E-value=0.021 Score=57.03 Aligned_cols=48 Identities=27% Similarity=0.705 Sum_probs=38.0
Q ss_pred CCcccccccccccC---EeecCCCccchhhHHHHhcc-----------------------CCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLER-----------------------ERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~p---v~L~CgHiFc~~Cl~~wl~~-----------------------~~tCPlCR~~i~~~ 414 (431)
...|.||+--|.+. ++++|-|.||..|+.+++.. +..||.||..+..+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 34799998877644 58899999999999988752 23799999988744
No 80
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.046 Score=54.48 Aligned_cols=44 Identities=36% Similarity=0.921 Sum_probs=36.7
Q ss_pred Ccccccccccc------cCEeecCCCccchhhHHHHhcc-CCCCCCCcccc
Q 014069 368 DLCAICQEKMH------APILLQCKHLFCEDCVSEWLER-ERTCPLCRALV 411 (431)
Q Consensus 368 d~C~IC~e~~~------~pv~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i 411 (431)
..|-||-+++. .|..|.|||.+|..|+...+.. .-.||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999885 4678899999999999887765 44799999984
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.77 E-value=0.055 Score=54.87 Aligned_cols=53 Identities=25% Similarity=0.579 Sum_probs=38.0
Q ss_pred ccCCcccccccccccCE----eecCCCccchhhHHHHhcc-CCCCCCCccccCCCCCc
Q 014069 365 AAGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLR 417 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l~ 417 (431)
+++|.|+.|+|.+...- --+||-..|..|....-+. ...||-||....+++++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~ 69 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR 69 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence 34567999999985332 2367877888887665443 56899999987766654
No 82
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.11 Score=50.09 Aligned_cols=46 Identities=26% Similarity=0.613 Sum_probs=37.6
Q ss_pred CCccccccccccc--CEeecCCCccchhhHHHHhcc--------CCCCCCCccccC
Q 014069 367 GDLCAICQEKMHA--PILLQCKHLFCEDCVSEWLER--------ERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~--pv~L~CgHiFc~~Cl~~wl~~--------~~tCPlCR~~i~ 412 (431)
+..|..|...+.+ .++|-|-|.||.+|+.+|-.. .-.||.|..+|-
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4579999988764 578999999999999999753 338999988764
No 83
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.19 E-value=0.09 Score=38.86 Aligned_cols=42 Identities=29% Similarity=0.767 Sum_probs=21.2
Q ss_pred ccccccccccC--Eee--cCCCccchhhHHHHhc-cCCCCCCCcccc
Q 014069 370 CAICQEKMHAP--ILL--QCKHLFCEDCVSEWLE-RERTCPLCRALV 411 (431)
Q Consensus 370 C~IC~e~~~~p--v~L--~CgHiFc~~Cl~~wl~-~~~tCPlCR~~i 411 (431)
|++|.+++... ... +|++..|..|...... ....||-||++-
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78898888332 233 5789999999999886 477899999863
No 84
>PHA03096 p28-like protein; Provisional
Probab=91.97 E-value=0.081 Score=53.05 Aligned_cols=42 Identities=36% Similarity=0.690 Sum_probs=30.5
Q ss_pred CcccccccccccC--------EeecCCCccchhhHHHHhcc---CCCCCCCcc
Q 014069 368 DLCAICQEKMHAP--------ILLQCKHLFCEDCVSEWLER---ERTCPLCRA 409 (431)
Q Consensus 368 d~C~IC~e~~~~p--------v~L~CgHiFc~~Cl~~wl~~---~~tCPlCR~ 409 (431)
..|.||++..... ....|.|.||..|+..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5799999976432 35589999999999999854 334555543
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.064 Score=53.82 Aligned_cols=42 Identities=31% Similarity=0.921 Sum_probs=29.5
Q ss_pred cccccccccc-cCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 369 LCAICQEKMH-APILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 369 ~C~IC~e~~~-~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.|.-|--.+. -....||+|+||.+|.+. ...+.||.|-..+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 5665643322 235779999999999754 66789999966553
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.52 E-value=0.082 Score=61.55 Aligned_cols=43 Identities=28% Similarity=0.740 Sum_probs=39.0
Q ss_pred CCcccccccccc-cCEeecCCCccchhhHHHHhccCCCCCCCcc
Q 014069 367 GDLCAICQEKMH-APILLQCKHLFCEDCVSEWLERERTCPLCRA 409 (431)
Q Consensus 367 ~d~C~IC~e~~~-~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~ 409 (431)
...|.||.+.++ ..-...|||.+|..|...|+..+..||+|..
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 348999999998 6678899999999999999999999999974
No 87
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=91.50 E-value=0.26 Score=41.10 Aligned_cols=31 Identities=16% Similarity=0.682 Sum_probs=25.8
Q ss_pred ccCCcccccccccccCE--eecCCCccchhhHH
Q 014069 365 AAGDLCAICQEKMHAPI--LLQCKHLFCEDCVS 395 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv--~L~CgHiFc~~Cl~ 395 (431)
..+..|++|...+.+.. ..||||+||..|..
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34668999999998764 67999999999974
No 88
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.11 Score=49.88 Aligned_cols=40 Identities=38% Similarity=0.906 Sum_probs=33.0
Q ss_pred cccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccC
Q 014069 369 LCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 369 ~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.|-.|.+.-.....+||.|. +|..|-.. -..||.|+.+..
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 39999999888889999987 99999643 456999988764
No 89
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.56 E-value=0.17 Score=36.99 Aligned_cols=38 Identities=29% Similarity=0.997 Sum_probs=25.2
Q ss_pred cccccccccc--CEeecCC-----CccchhhHHHHhcc--CCCCCCC
Q 014069 370 CAICQEKMHA--PILLQCK-----HLFCEDCVSEWLER--ERTCPLC 407 (431)
Q Consensus 370 C~IC~e~~~~--pv~L~Cg-----HiFc~~Cl~~wl~~--~~tCPlC 407 (431)
|-||++.-.+ +...||+ -..|..|+.+|+.. +.+|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788877543 4677886 25799999999974 5678887
No 90
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.26 E-value=0.77 Score=41.00 Aligned_cols=48 Identities=25% Similarity=0.614 Sum_probs=38.7
Q ss_pred CcccccccccccCEee----cCCCccchhhHHHHhcc---CCCCCCCccccCCCC
Q 014069 368 DLCAICQEKMHAPILL----QCKHLFCEDCVSEWLER---ERTCPLCRALVKPAD 415 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L----~CgHiFc~~Cl~~wl~~---~~tCPlCR~~i~~~~ 415 (431)
-+|.||+|.-.+...| -||-..|.-|....++. ...||.|+..++...
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4899999998887655 38988999998776654 679999999987654
No 91
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.26 E-value=0.19 Score=44.85 Aligned_cols=42 Identities=24% Similarity=0.657 Sum_probs=30.3
Q ss_pred CCccccccccccc--CE-eecCC------CccchhhHHHHhccCCCCCCCc
Q 014069 367 GDLCAICQEKMHA--PI-LLQCK------HLFCEDCVSEWLERERTCPLCR 408 (431)
Q Consensus 367 ~d~C~IC~e~~~~--pv-~L~Cg------HiFc~~Cl~~wl~~~~tCPlCR 408 (431)
.-+|+||.+...+ .+ .++|+ |+||.+|+.+|-...+.=|.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 3579999999877 43 45675 8999999999954444444433
No 92
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.28 Score=48.99 Aligned_cols=48 Identities=25% Similarity=0.728 Sum_probs=36.4
Q ss_pred ccccccccc-ccCE----eecCCCccchhhHHHHhcc-CCCCCCCccccCCCCC
Q 014069 369 LCAICQEKM-HAPI----LLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADL 416 (431)
Q Consensus 369 ~C~IC~e~~-~~pv----~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l 416 (431)
.|+.|..+. .+|- .-+|+|..|++|+...+.. ...||-|-..+.....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 599998753 3441 2399999999999999976 4589999887765543
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.89 E-value=0.32 Score=44.56 Aligned_cols=33 Identities=27% Similarity=0.668 Sum_probs=24.2
Q ss_pred CCcccccccccccCEeecCC-------Cc------cchhhHHHHhc
Q 014069 367 GDLCAICQEKMHAPILLQCK-------HL------FCEDCVSEWLE 399 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~Cg-------Hi------Fc~~Cl~~wl~ 399 (431)
+-.|+||+|-..+.++|-|. .. -|..|+.+.-+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 45799999999999988652 11 34678887653
No 94
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=0.26 Score=53.71 Aligned_cols=58 Identities=34% Similarity=0.726 Sum_probs=47.6
Q ss_pred cCCCCchhhhhccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 354 YGSYATTEQVNAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 354 ~~~~at~eq~~~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
-.+.++.+++.+..+.|.+|.+++ .....+|. |..|+..|...+..||+|++.+..++
T Consensus 466 ~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 466 SLSEATPSQLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred CCCCCChhhhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 334566777778889999999999 66677888 78999999999999999999887554
No 95
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.28 E-value=1.6 Score=45.41 Aligned_cols=44 Identities=23% Similarity=0.631 Sum_probs=33.6
Q ss_pred Cccccccccc---ccCEeecCCCccchhhHHHHhccC---CCCCCCcccc
Q 014069 368 DLCAICQEKM---HAPILLQCKHLFCEDCVSEWLERE---RTCPLCRALV 411 (431)
Q Consensus 368 d~C~IC~e~~---~~pv~L~CgHiFc~~Cl~~wl~~~---~tCPlCR~~i 411 (431)
..|||=.+.- ..|.+|.|||+.|.+-+.+..+.. ..||.|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4788866543 457899999999999998887653 4899994433
No 96
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.16 E-value=0.2 Score=36.88 Aligned_cols=43 Identities=28% Similarity=0.735 Sum_probs=26.3
Q ss_pred cccccccccccCEeecCC-CccchhhHHHHhccCCCCCCCccccCC
Q 014069 369 LCAICQEKMHAPILLQCK-HLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 369 ~C~IC~e~~~~pv~L~Cg-HiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
.|--|+-. +.-...|. |..|..|+...+.+...||+|..+++.
T Consensus 4 nCKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 35566643 44456686 999999999999999999999998864
No 97
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=87.71 E-value=0.29 Score=51.24 Aligned_cols=35 Identities=29% Similarity=0.739 Sum_probs=31.4
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER 400 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~ 400 (431)
++..|+||-.-+++|+.|+|+|..|.-|....+.+
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 45689999999999999999999999999987754
No 98
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=87.48 E-value=0.53 Score=33.85 Aligned_cols=38 Identities=24% Similarity=0.731 Sum_probs=23.6
Q ss_pred ccccccccccCEeec---CCCccchhhHHHHhccCC--CCCCC
Q 014069 370 CAICQEKMHAPILLQ---CKHLFCEDCVSEWLERER--TCPLC 407 (431)
Q Consensus 370 C~IC~e~~~~pv~L~---CgHiFc~~Cl~~wl~~~~--tCPlC 407 (431)
|.+|.+......+=+ |+=.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888877776543 888899999999997654 79987
No 99
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=0.38 Score=44.93 Aligned_cols=46 Identities=26% Similarity=0.628 Sum_probs=33.9
Q ss_pred cccccccccccC-------EeecCCCccchhhHHHHhcc-----------CCCCCCCccccCCC
Q 014069 369 LCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLER-----------ERTCPLCRALVKPA 414 (431)
Q Consensus 369 ~C~IC~e~~~~p-------v~L~CgHiFc~~Cl~~wl~~-----------~~tCPlCR~~i~~~ 414 (431)
.|-||...--+. -...||.-||.-|+..|++. -..||.|..++.-+
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 577887654332 24579999999999999963 23799998887543
No 100
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=85.54 E-value=0.21 Score=55.18 Aligned_cols=49 Identities=31% Similarity=0.762 Sum_probs=40.5
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhcc---CCCCCCCccccCCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER---ERTCPLCRALVKPAD 415 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~---~~tCPlCR~~i~~~~ 415 (431)
..+|+||.+.+.+|+.+.|.|.||..|+..-+.. ...||+|+..+....
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 3579999999999999999999999998877754 347999987765443
No 101
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.93 E-value=0.36 Score=48.27 Aligned_cols=32 Identities=28% Similarity=0.797 Sum_probs=25.4
Q ss_pred CCCccchhhHHHHhcc-------------CCCCCCCccccCCCCC
Q 014069 385 CKHLFCEDCVSEWLER-------------ERTCPLCRALVKPADL 416 (431)
Q Consensus 385 CgHiFc~~Cl~~wl~~-------------~~tCPlCR~~i~~~~l 416 (431)
|....|.+|+.+|+.. +.+||+||+.+...|+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5677899999999842 4589999999876654
No 102
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=84.71 E-value=0.62 Score=46.50 Aligned_cols=42 Identities=31% Similarity=0.732 Sum_probs=35.6
Q ss_pred Ccccccccccc----cCEeecCCCccchhhHHHHhccCCCCCCCcc
Q 014069 368 DLCAICQEKMH----APILLQCKHLFCEDCVSEWLERERTCPLCRA 409 (431)
Q Consensus 368 d~C~IC~e~~~----~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~ 409 (431)
..|+||.+.+. .+..++|||..|..|........-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999864 4568999999999999988776789999987
No 103
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.13 E-value=0.74 Score=46.56 Aligned_cols=41 Identities=34% Similarity=0.885 Sum_probs=33.9
Q ss_pred CcccccccccccCEeecC--CCccchhhHHHHhccCCCCCCCccccC
Q 014069 368 DLCAICQEKMHAPILLQC--KHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~C--gHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.+|+||.+.+..|+ ..| ||.-|..|-. +....||.||.++.
T Consensus 49 leCPvC~~~l~~Pi-~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 49 LDCPVCFNPLSPPI-FQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred ccCchhhccCcccc-eecCCCcEehhhhhh---hhcccCCccccccc
Confidence 48999999999887 355 7999999975 34678999999886
No 104
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.88 E-value=0.68 Score=51.94 Aligned_cols=51 Identities=27% Similarity=0.711 Sum_probs=38.8
Q ss_pred ccCCccccccccc--ccCEeecCCC-----ccchhhHHHHhcc--CCCCCCCccccCCCC
Q 014069 365 AAGDLCAICQEKM--HAPILLQCKH-----LFCEDCVSEWLER--ERTCPLCRALVKPAD 415 (431)
Q Consensus 365 ~~~d~C~IC~e~~--~~pv~L~CgH-----iFc~~Cl~~wl~~--~~tCPlCR~~i~~~~ 415 (431)
+++..|.||+.+- .+|..-||++ ..|++|+.+|+.- ...|-+|+.+++-++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 4457899999764 3455668874 3799999999974 568999999887555
No 105
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.85 E-value=0.37 Score=46.96 Aligned_cols=45 Identities=31% Similarity=0.799 Sum_probs=33.3
Q ss_pred CCccccccccc-ccC-Ee---ec-CCCccchhhHHHHhccC-CCCC--CCcccc
Q 014069 367 GDLCAICQEKM-HAP-IL---LQ-CKHLFCEDCVSEWLERE-RTCP--LCRALV 411 (431)
Q Consensus 367 ~d~C~IC~e~~-~~p-v~---L~-CgHiFc~~Cl~~wl~~~-~tCP--lCR~~i 411 (431)
+..|++|..+. -+| ++ -| |-|..|++|+.+.+.+. ..|| -|.+-+
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 45899999873 333 22 24 99999999999999874 4799 675544
No 106
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=81.71 E-value=0.69 Score=52.14 Aligned_cols=45 Identities=29% Similarity=0.820 Sum_probs=33.7
Q ss_pred cCCcccccccccccCE----eecCCCccchhhHHHHhcc-C------CCCCCCccc
Q 014069 366 AGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLER-E------RTCPLCRAL 410 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~~-~------~tCPlCR~~ 410 (431)
...+|.||.+.+.... --.|-|+||..||..|-.. + =.||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 3458999999986432 2358899999999999753 1 179999843
No 107
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.23 E-value=0.86 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.717 Sum_probs=22.7
Q ss_pred eecCCCccchhhHHHHhccCCCCCC
Q 014069 382 LLQCKHLFCEDCVSEWLERERTCPL 406 (431)
Q Consensus 382 ~L~CgHiFc~~Cl~~wl~~~~tCPl 406 (431)
...|+|+.|.+|..+|+.....||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 4579999999999999999889985
No 108
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=79.62 E-value=0.89 Score=50.90 Aligned_cols=47 Identities=13% Similarity=0.393 Sum_probs=35.3
Q ss_pred cCCcccccccccccCE----ee---cCCCccchhhHHHHhcc------CCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPI----LL---QCKHLFCEDCVSEWLER------ERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv----~L---~CgHiFc~~Cl~~wl~~------~~tCPlCR~~i~ 412 (431)
+.+.|.+|..++..++ .. .|+|.||..||..|.++ ...|++|...+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3467888888777643 33 49999999999999975 346899977653
No 109
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.09 E-value=0.22 Score=51.47 Aligned_cols=47 Identities=26% Similarity=0.581 Sum_probs=40.0
Q ss_pred CcccccccccccC----EeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHAP----ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~p----v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..|+||.+.+++- ..+-|||.+|..|+..|+.....||.||..+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 4699999888654 3578999999999999999988999999988643
No 110
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.50 E-value=1.3 Score=50.21 Aligned_cols=34 Identities=26% Similarity=0.663 Sum_probs=27.4
Q ss_pred cCCccccccccccc-C-EeecCCCccchhhHHHHhc
Q 014069 366 AGDLCAICQEKMHA-P-ILLQCKHLFCEDCVSEWLE 399 (431)
Q Consensus 366 ~~d~C~IC~e~~~~-p-v~L~CgHiFc~~Cl~~wl~ 399 (431)
.++.|.+|.-.+.. | .+-||||.||.+|+.+-..
T Consensus 816 p~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 46799999987643 3 5779999999999988763
No 111
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=73.58 E-value=1.7 Score=43.10 Aligned_cols=46 Identities=24% Similarity=0.798 Sum_probs=35.5
Q ss_pred CCccccccccccc----CEeecCC-----CccchhhHHHHhc--cCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHA----PILLQCK-----HLFCEDCVSEWLE--RERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~----pv~L~Cg-----HiFc~~Cl~~wl~--~~~tCPlCR~~i~ 412 (431)
+..|-||+++... +...||. +..|..|+..|+. ....|..|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999997643 4567775 4579999999997 5668999987654
No 112
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.34 E-value=2.1 Score=42.08 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=30.9
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE 399 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~ 399 (431)
.-+.|..|+....+|+..+=||+||.+||.+++-
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3468999999999999999999999999999874
No 113
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.35 E-value=1.5 Score=43.22 Aligned_cols=46 Identities=22% Similarity=0.650 Sum_probs=33.8
Q ss_pred cCCcccccccccccCE----eecCC-----CccchhhHHHHhccC--------CCCCCCcccc
Q 014069 366 AGDLCAICQEKMHAPI----LLQCK-----HLFCEDCVSEWLERE--------RTCPLCRALV 411 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv----~L~Cg-----HiFc~~Cl~~wl~~~--------~tCPlCR~~i 411 (431)
.+..|-||...-++.. +-||. |--|..|+..|++.+ -.||.|+.+-
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 4557899998766543 23663 668999999999642 2699998864
No 114
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.26 E-value=1.6 Score=47.94 Aligned_cols=35 Identities=40% Similarity=0.976 Sum_probs=28.3
Q ss_pred ccccccccc----ccCEeecCCCccchhhHHHHhccCCCCC
Q 014069 369 LCAICQEKM----HAPILLQCKHLFCEDCVSEWLERERTCP 405 (431)
Q Consensus 369 ~C~IC~e~~----~~pv~L~CgHiFc~~Cl~~wl~~~~tCP 405 (431)
.|.||...+ ..|+.+.|||..|..|+..-.. .+||
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred hchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 699997766 3678999999999999987654 4677
No 115
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=72.05 E-value=1.2 Score=33.05 Aligned_cols=42 Identities=31% Similarity=0.767 Sum_probs=22.2
Q ss_pred CcccccccccccCEe-ecCCCccchhhHHHHhcc---C--CCCCCCccc
Q 014069 368 DLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLER---E--RTCPLCRAL 410 (431)
Q Consensus 368 d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~---~--~tCPlCR~~ 410 (431)
..|++....+..|++ ..|.|.-|-+ +..|++. . -.||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 369999999999986 4899997754 4455542 2 269999763
No 116
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.56 E-value=2.2 Score=42.68 Aligned_cols=33 Identities=30% Similarity=0.820 Sum_probs=29.3
Q ss_pred CcccccccccccCEeecC----CCccchhhHHHHhcc
Q 014069 368 DLCAICQEKMHAPILLQC----KHLFCEDCVSEWLER 400 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~C----gHiFc~~Cl~~wl~~ 400 (431)
..|.+|+|.+++.-...| .|.||-.|-++-+++
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 589999999999988888 599999999998875
No 117
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.76 E-value=1.5 Score=40.51 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=22.2
Q ss_pred hccCCcccccccccccC---EeecCCCccch
Q 014069 364 NAAGDLCAICQEKMHAP---ILLQCKHLFCE 391 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~p---v~L~CgHiFc~ 391 (431)
..+..+|.||+|++... .+|||-.+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34566999999999755 47999988875
No 118
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=69.70 E-value=13 Score=40.16 Aligned_cols=91 Identities=12% Similarity=0.114 Sum_probs=54.7
Q ss_pred ccchhHHHHHHHHHHHHhheeeeeeccCCcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 014069 197 ERKNYILFMIFIGFMFQVIGIYWWFRSDDILYPLLMIPPSTIPPFWHAVFIILVNDTMVRQAAMAMKCLLLIYYKNGRGH 276 (431)
Q Consensus 197 ~rk~~~l~~i~~~~~~~i~~vy~~f~~~~l~~~Li~l~p~~~~~~~~~lw~V~itd~ilr~i~i~lK~lil~l~~~~~~~ 276 (431)
.|+...+...++.+...+...|+.+... ..++|...-...-...++|.+.....|.+.+.+. .+..
T Consensus 379 ~rH~R~L~v~~~Ll~~P~~~~y~l~~~~-------------~i~tWll~v~s~~~~t~vkv~~sl~iY~Lf~vd~-~~~~ 444 (508)
T PF13705_consen 379 WRHFRALSVCLFLLVFPLYLSYYLWSFF-------------PIDTWLLIVTSFCVETIVKVLGSLAIYILFMVDA-RREE 444 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Confidence 3444455544445555555555433221 1345554444444455667777777888877775 3678
Q ss_pred cccccCcchhhHHHHHHHHHHHcCc
Q 014069 277 NFRRQGQILTLVEYALLLYRALLPT 301 (431)
Q Consensus 277 ~~~~~g~~l~~lE~~s~lyr~llpi 301 (431)
+|++-+++.+++.......+.+..+
T Consensus 445 ~WE~LDD~VYyv~a~~~~~EFl~~l 469 (508)
T PF13705_consen 445 PWEKLDDYVYYVRATGRVLEFLVGL 469 (508)
T ss_pred chhhcccEEEEEeccCcEeeehhhh
Confidence 8999999988887766666555443
No 119
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.16 E-value=6.2 Score=41.34 Aligned_cols=34 Identities=35% Similarity=0.819 Sum_probs=25.7
Q ss_pred CCcccccccccccC----EeecCCCccchhhHHHHhcc
Q 014069 367 GDLCAICQEKMHAP----ILLQCKHLFCEDCVSEWLER 400 (431)
Q Consensus 367 ~d~C~IC~e~~~~p----v~L~CgHiFc~~Cl~~wl~~ 400 (431)
..+|.||..+.... ....|+|.||.+|+.+.++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 45899999443322 25679999999999998863
No 120
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.79 E-value=8.2 Score=38.16 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=37.9
Q ss_pred CCcccccccccccC----EeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAP----ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~p----v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
...|+|---+|... ..-+|||+|-+.-+.+. ...+|+.|.+.....|..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeE
Confidence 35799877777654 35699999999888774 367999999998877654
No 121
>COG4393 Predicted membrane protein [Function unknown]
Probab=57.84 E-value=91 Score=32.28 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 014069 145 FARWVEQVLPFSLLLLVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTA 193 (431)
Q Consensus 145 ~~~wl~~~lPF~lILl~k~~~~H~~gi~~~i~l~~t~~~aN~~i~~qVa 193 (431)
+...++..||+.+++-..-.+...--.+..+|+..-|.+.---+-.+.-
T Consensus 5 Fvs~Lqs~LP~alLlg~~w~~~p~~~~~~vvwl~~L~~~~g~~~~~y~p 53 (405)
T COG4393 5 FVSFLQSVLPLALLLGITWNKKPIFKSFFVVWLGFLFGYFGFFIAAYFP 53 (405)
T ss_pred HHHHHHHHHHHHHHHcCCcccccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4667899999999887655555555555556666555554444444433
No 122
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=57.32 E-value=4.2 Score=40.68 Aligned_cols=45 Identities=24% Similarity=0.574 Sum_probs=23.0
Q ss_pred cCCcccccccccccCEeec-----CCCccchhhHHHHhccCCCCCCCccc
Q 014069 366 AGDLCAICQEKMHAPILLQ-----CKHLFCEDCVSEWLERERTCPLCRAL 410 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~-----CgHiFc~~Cl~~wl~~~~tCPlCR~~ 410 (431)
....|++|=....-.+... -.|.+|..|-.+|-.....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 3468999998754433322 24778999999998888899999554
No 123
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=55.41 E-value=1.3 Score=35.32 Aligned_cols=40 Identities=28% Similarity=0.715 Sum_probs=23.1
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
..|+.|+.++...- +|..|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECcccccc-ceecccCCCcccHHH
Confidence 46999998865322 78888888765 455678999988773
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=54.31 E-value=6.6 Score=37.80 Aligned_cols=42 Identities=24% Similarity=0.661 Sum_probs=34.7
Q ss_pred CcccccccccccCEe-ecCCCccchhhHHHHhccCCCCCCCcc
Q 014069 368 DLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLERERTCPLCRA 409 (431)
Q Consensus 368 d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~~~tCPlCR~ 409 (431)
..|.+|+...-..++ =.|+-.+|..|+.+.+++...||.|..
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 379999998766653 467777999999999999999999944
No 125
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.43 E-value=11 Score=38.48 Aligned_cols=48 Identities=23% Similarity=0.593 Sum_probs=34.1
Q ss_pred CCcccccccccc--------c---------C--EeecCCCccchhhHHHHhcc---------CCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMH--------A---------P--ILLQCKHLFCEDCVSEWLER---------ERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~--------~---------p--v~L~CgHiFc~~Cl~~wl~~---------~~tCPlCR~~i~~~ 414 (431)
+.+|++|+..-. + | ...||||+.-++-..-|-+- +..||+|-..+.-+
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 458999997532 1 1 24589999888888888753 45899998877533
No 126
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.28 E-value=6.8 Score=41.65 Aligned_cols=51 Identities=35% Similarity=0.668 Sum_probs=37.5
Q ss_pred cCCccccccccccc-CEeecCCCccchhhHHHHhcc------C--CCC--CCCccccCCCCC
Q 014069 366 AGDLCAICQEKMHA-PILLQCKHLFCEDCVSEWLER------E--RTC--PLCRALVKPADL 416 (431)
Q Consensus 366 ~~d~C~IC~e~~~~-pv~L~CgHiFc~~Cl~~wl~~------~--~tC--PlCR~~i~~~~l 416 (431)
....|-||.+.... ...+.|+|.||..|+...+.+ . -+| +-|++.+...++
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i 130 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTV 130 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCcee
Confidence 34689999999885 678899999999999998864 1 245 456665554444
No 127
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.89 E-value=5.5 Score=40.24 Aligned_cols=48 Identities=31% Similarity=0.727 Sum_probs=40.8
Q ss_pred ccCCcccccccccccCEee-cCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
..++.|-+|...+.-|.+- .|.|.||..|...|....+.||-|+....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 3467899999999887655 49999999999999999999999987654
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.39 E-value=16 Score=41.24 Aligned_cols=43 Identities=19% Similarity=0.484 Sum_probs=32.5
Q ss_pred cccccccccccCE--eecCCCccchhhHHHHhccCCCCCC--Ccccc
Q 014069 369 LCAICQEKMHAPI--LLQCKHLFCEDCVSEWLERERTCPL--CRALV 411 (431)
Q Consensus 369 ~C~IC~e~~~~pv--~L~CgHiFc~~Cl~~wl~~~~tCPl--CR~~i 411 (431)
.|.+|...+..-. .--|+|.-|.+|+..|+.....||. |-..-
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c 827 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLC 827 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCccc
Confidence 6778876654332 2359999999999999999888988 75443
No 129
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=46.99 E-value=16 Score=37.40 Aligned_cols=45 Identities=24% Similarity=0.587 Sum_probs=36.3
Q ss_pred CcccccccccccC----EeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 368 DLCAICQEKMHAP----ILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 368 d~C~IC~e~~~~p----v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
..|+||.+.+... +--+|++..|..|+..-...+..||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 6899999987322 23478898999999998888999999997654
No 130
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.52 E-value=8 Score=40.49 Aligned_cols=29 Identities=41% Similarity=0.954 Sum_probs=0.0
Q ss_pred EeecCCCccchhhHHHHhc------cCCCCCCCccccC
Q 014069 381 ILLQCKHLFCEDCVSEWLE------RERTCPLCRALVK 412 (431)
Q Consensus 381 v~L~CgHiFc~~Cl~~wl~------~~~tCPlCR~~i~ 412 (431)
+-+.|||++-.. .|-. +..+||+||..-+
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~ 339 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGP 339 (416)
T ss_dssp --------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCccccCC
Confidence 457899986544 4643 2568999998654
No 131
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=42.74 E-value=87 Score=35.98 Aligned_cols=38 Identities=29% Similarity=0.621 Sum_probs=29.1
Q ss_pred cccCcchhhHHHHHHHHHHHcCcchhhhhhhcchhhhHH
Q 014069 279 RRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGSLF 317 (431)
Q Consensus 279 ~~~g~~l~~lE~~s~lyr~llpi~~w~~y~l~~~~g~lf 317 (431)
..-|.+-+-+|...++|. ++|.|+|+...+...|..+|
T Consensus 167 spvgsfa~c~evvlLiYT-v~plPLyL~~~~gi~YSilF 204 (1318)
T KOG3618|consen 167 SPVGSFAMCIEVVLLIYT-VMPLPLYLSLCLGIAYSILF 204 (1318)
T ss_pred CchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHH
Confidence 344777888999988885 55999999988876666554
No 132
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=41.17 E-value=24 Score=26.50 Aligned_cols=25 Identities=40% Similarity=0.857 Sum_probs=14.5
Q ss_pred cCCCccchhhHHHHhccCCCCCCCc
Q 014069 384 QCKHLFCEDCVSEWLERERTCPLCR 408 (431)
Q Consensus 384 ~CgHiFc~~Cl~~wl~~~~tCPlCR 408 (431)
.|++.||.+|=.=.-+.-.+||-|-
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 6899999999543334556899883
No 133
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=41.07 E-value=8.9 Score=42.19 Aligned_cols=38 Identities=26% Similarity=0.786 Sum_probs=24.6
Q ss_pred CCcccccccc-----c-cc--CEeecCCCccchhhHHHHhccCCCCCCC
Q 014069 367 GDLCAICQEK-----M-HA--PILLQCKHLFCEDCVSEWLERERTCPLC 407 (431)
Q Consensus 367 ~d~C~IC~e~-----~-~~--pv~L~CgHiFc~~Cl~~wl~~~~tCPlC 407 (431)
+..|.+|... + .+ .....|+++||..|+.. ....||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 4567777532 1 11 12457999999999654 34459999
No 134
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=40.32 E-value=9.8 Score=39.31 Aligned_cols=64 Identities=9% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCccchhhHHH----HHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 014069 132 SREGSYQSYDIHQ----FARWV-EQVLPFSLLLLVVFVR---QHLQGFFVTVWITAVIFKSNDILRKQTALK 195 (431)
Q Consensus 132 ~~~~~~q~~e~q~----~~~wl-~~~lPF~lILl~k~~~---~H~~gi~~~i~l~~t~~~aN~~i~~qValk 195 (431)
++++|.+.||=-. ..-|+ --+.|++.-+.....+ .....+..+.+++.+...+|..+..+++.+
T Consensus 101 ~~~~s~h~yee~~~~~m~~~~lpvi~aPyLFWla~iaascf~A~v~a~V~~~gLAl~LLila~~v~s~as~r 172 (489)
T PF07415_consen 101 RRQSSQHIYEEPHQRSMNPPWLPVIIAPYLFWLAGIAASCFSASVSAAVLFTGLALSLLILAALVNSYASQR 172 (489)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CccchhHHHHhhcccccCCccchhhHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554322 22343 1234444443333222 334445667778888888888887777765
No 135
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.37 E-value=20 Score=36.64 Aligned_cols=42 Identities=24% Similarity=0.685 Sum_probs=31.4
Q ss_pred Cccccccccc---ccCEeecCCCccchhhHHHHhcc---CCCCCCCcc
Q 014069 368 DLCAICQEKM---HAPILLQCKHLFCEDCVSEWLER---ERTCPLCRA 409 (431)
Q Consensus 368 d~C~IC~e~~---~~pv~L~CgHiFc~~Cl~~wl~~---~~tCPlCR~ 409 (431)
..||+-.+.- ..|+.+.|||+.-.+-++..-+. ...||.|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 3788755542 45789999999999998886654 458999943
No 136
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.96 E-value=18 Score=38.00 Aligned_cols=42 Identities=24% Similarity=0.656 Sum_probs=31.0
Q ss_pred cCCcccccccccccC-----EeecCCCccchhhHHHHhccCCCCCCC
Q 014069 366 AGDLCAICQEKMHAP-----ILLQCKHLFCEDCVSEWLERERTCPLC 407 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p-----v~L~CgHiFc~~Cl~~wl~~~~tCPlC 407 (431)
..-.|+.|...+... ..=.|||.||..|...|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 345899998776432 223499999999999998877777555
No 137
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.47 E-value=28 Score=39.55 Aligned_cols=42 Identities=19% Similarity=0.555 Sum_probs=30.7
Q ss_pred ccCCcccccccccc-------cCEeecCCCccchhhHHHHhccCCCCCCC
Q 014069 365 AAGDLCAICQEKMH-------APILLQCKHLFCEDCVSEWLERERTCPLC 407 (431)
Q Consensus 365 ~~~d~C~IC~e~~~-------~pv~L~CgHiFc~~Cl~~wl~~~~tCPlC 407 (431)
..++.|.-|.+..- .-+.+.|+|+||..|+..-..+.. |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 34568999998654 235789999999999987665544 6555
No 138
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=35.55 E-value=18 Score=36.86 Aligned_cols=32 Identities=38% Similarity=0.793 Sum_probs=19.1
Q ss_pred EeecCCCc--cchhhHHHHh-ccCCCCCCCccccC
Q 014069 381 ILLQCKHL--FCEDCVSEWL-ERERTCPLCRALVK 412 (431)
Q Consensus 381 v~L~CgHi--Fc~~Cl~~wl-~~~~tCPlCR~~i~ 412 (431)
+-|.|||+ +|..-.++=- .++..||+||..-+
T Consensus 318 vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp 352 (429)
T KOG3842|consen 318 VYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP 352 (429)
T ss_pred EEEeccccccccccccccccCcccCcCCeeeeecc
Confidence 46899987 5642221111 12568999987544
No 139
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.47 E-value=47 Score=25.47 Aligned_cols=45 Identities=24% Similarity=0.644 Sum_probs=30.5
Q ss_pred cccccccccccCE--eecCC--CccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 369 LCAICQEKMHAPI--LLQCK--HLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 369 ~C~IC~e~~~~pv--~L~Cg--HiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
.|--|-.++.... ..-|. ..||.+|....+ +..||.|...+....
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 4666666664332 33354 459999998876 578999988776543
No 140
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=35.42 E-value=24 Score=33.61 Aligned_cols=42 Identities=26% Similarity=0.782 Sum_probs=28.9
Q ss_pred hhhccCCcccccccc-c----cc-C--EeecCCCccchhhHHHHhccCCCCCCCc
Q 014069 362 QVNAAGDLCAICQEK-M----HA-P--ILLQCKHLFCEDCVSEWLERERTCPLCR 408 (431)
Q Consensus 362 q~~~~~d~C~IC~e~-~----~~-p--v~L~CgHiFc~~Cl~~wl~~~~tCPlCR 408 (431)
.....+..|.+|.+. . +. . .-..|+-+||..|.. +..||.|.
T Consensus 147 lC~~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 147 LCQQKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred HHHhCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 344557899999863 1 11 1 134799999999975 27799993
No 141
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=35.33 E-value=12 Score=39.11 Aligned_cols=46 Identities=22% Similarity=0.658 Sum_probs=0.0
Q ss_pred CCcccccccccc-----------------cC--EeecCCCccchhhHHHHhcc---------CCCCCCCccccC
Q 014069 367 GDLCAICQEKMH-----------------AP--ILLQCKHLFCEDCVSEWLER---------ERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~-----------------~p--v~L~CgHiFc~~Cl~~wl~~---------~~tCPlCR~~i~ 412 (431)
..+|++|+..-. .| ..-||||+.-++...-|-+- +..||+|-.++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 458999996421 11 24599999999999888753 358999988875
No 142
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.98 E-value=27 Score=30.42 Aligned_cols=41 Identities=34% Similarity=0.673 Sum_probs=32.7
Q ss_pred CcccccccccccCE--------------eecCCCccchhhHHHHhccCCCCCCCc
Q 014069 368 DLCAICQEKMHAPI--------------LLQCKHLFCEDCVSEWLERERTCPLCR 408 (431)
Q Consensus 368 d~C~IC~e~~~~pv--------------~L~CgHiFc~~Cl~~wl~~~~tCPlCR 408 (431)
..|--|+..+.++. -..|++.||.+|=.-+-+.-.+||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999999876531 347999999999877777778999995
No 143
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.98 E-value=33 Score=29.35 Aligned_cols=25 Identities=28% Similarity=0.865 Sum_probs=19.3
Q ss_pred CCccchhhHHHHhcc---------CCCCCCCccc
Q 014069 386 KHLFCEDCVSEWLER---------ERTCPLCRAL 410 (431)
Q Consensus 386 gHiFc~~Cl~~wl~~---------~~tCPlCR~~ 410 (431)
.=.||..||..++.. +-.||.||.-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 556999999998853 2369999873
No 144
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=33.69 E-value=22 Score=28.14 Aligned_cols=13 Identities=38% Similarity=1.239 Sum_probs=9.3
Q ss_pred ccchhhHHHHhcc
Q 014069 388 LFCEDCVSEWLER 400 (431)
Q Consensus 388 iFc~~Cl~~wl~~ 400 (431)
.||..|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999963
No 145
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=33.15 E-value=23 Score=25.87 Aligned_cols=38 Identities=18% Similarity=0.514 Sum_probs=22.1
Q ss_pred ccccccccccCE-e-ecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 370 CAICQEKMHAPI-L-LQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 370 C~IC~e~~~~pv-~-L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
|..|...+.... . ..-+..||.+| .+|-.|+.++...+
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 555666554332 2 25566677665 46777777776554
No 146
>COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]
Probab=31.54 E-value=2.5e+02 Score=25.01 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=48.5
Q ss_pred hhHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccchhHHHHHHHH
Q 014069 140 YDIHQFARWV---EQVLPFSLLLLVVF-------VRQHLQGFFVTVWITAVIFKSNDILRKQTALKGERKNYILFMIFIG 209 (431)
Q Consensus 140 ~e~q~~~~wl---~~~lPF~lILl~k~-------~~~H~~gi~~~i~l~~t~~~aN~~i~~qValk~~rk~~~l~~i~~~ 209 (431)
.|+|.-.|-- -.|+|-.+||+... -.-|+.|+..+. .-..|+-...++ ....+++-..+.|..+.
T Consensus 42 ~eLqraira~gNatEYIPi~lill~~lemnga~tw~ihilG~il~~---gRv~Ha~g~~~~--~~~~R~~Gm~aTw~~li 116 (131)
T COG3788 42 SELQRAIRAHGNATEYIPIGLILLLFLEMNGAETWMVHILGIILTA---GRVLHAYGLHHR--LSPWRASGMSATWCALI 116 (131)
T ss_pred HHHHHHHHHcCChHHHhHHHHHHHHHHHHcCchhHHHHHHHHHHHH---HHHHHHHHHhcc--CCcchhhhHHHHHHHHH
Confidence 6777777664 57889888887654 346777765543 445566555544 55666667777776555
Q ss_pred HHHHhheeeeeec
Q 014069 210 FMFQVIGIYWWFR 222 (431)
Q Consensus 210 ~~~~i~~vy~~f~ 222 (431)
+. .+..+||.++
T Consensus 117 v~-~lanl~y~p~ 128 (131)
T COG3788 117 VM-VLANLWYLPW 128 (131)
T ss_pred HH-HHHHHHhhcc
Confidence 43 5556665443
No 147
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.11 E-value=34 Score=35.15 Aligned_cols=41 Identities=32% Similarity=0.690 Sum_probs=31.2
Q ss_pred CcccccccccccCE---eecCCCccchhhHHHHhccCCCCCCCc
Q 014069 368 DLCAICQEKMHAPI---LLQCKHLFCEDCVSEWLERERTCPLCR 408 (431)
Q Consensus 368 d~C~IC~e~~~~pv---~L~CgHiFc~~Cl~~wl~~~~tCPlCR 408 (431)
..|-.|.++....- .-.|+|+||.+|=.-.-+.-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 45999977765542 346899999999766556677899995
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=29.73 E-value=20 Score=27.61 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=16.9
Q ss_pred cCCcccccccccccCE----eecCCCccchhhHHHHh
Q 014069 366 AGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWL 398 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl 398 (431)
....|.+|...|.--. --.||++||.+|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3468999999985322 23699999999976543
No 149
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.47 E-value=21 Score=36.46 Aligned_cols=44 Identities=23% Similarity=0.637 Sum_probs=31.9
Q ss_pred cCCcccccccccccCEe-e--cC--CCccchhhHHHHhccCCCCCCCcc
Q 014069 366 AGDLCAICQEKMHAPIL-L--QC--KHLFCEDCVSEWLERERTCPLCRA 409 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~-L--~C--gHiFc~~Cl~~wl~~~~tCPlCR~ 409 (431)
....|++|-....-.+. + .= .|..|..|-.+|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45689999987543321 1 12 366888899999988899999965
No 150
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=87 Score=33.23 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=23.8
Q ss_pred hhccCCcccccccccccC------EeecCCCccchhhHHHH
Q 014069 363 VNAAGDLCAICQEKMHAP------ILLQCKHLFCEDCVSEW 397 (431)
Q Consensus 363 ~~~~~d~C~IC~e~~~~p------v~L~CgHiFc~~Cl~~w 397 (431)
+......|+-|....+.. ..+.|+|.||..|-...
T Consensus 364 l~~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l 404 (445)
T KOG1814|consen 364 LESNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELL 404 (445)
T ss_pred HHhcCCCCCcccceeecCCCccceeeccccccceeehhhhc
Confidence 334456899998877543 35678888888776554
No 151
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.90 E-value=42 Score=32.81 Aligned_cols=27 Identities=26% Similarity=0.737 Sum_probs=22.4
Q ss_pred cchhhHHHHhccCCCCCCCccccCCCC
Q 014069 389 FCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 389 Fc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
-|..|-...-.....||+|++.-..++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrn 222 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRN 222 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCC
Confidence 689999998888999999988765443
No 152
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.76 E-value=16 Score=37.13 Aligned_cols=43 Identities=26% Similarity=0.620 Sum_probs=30.8
Q ss_pred CCcccccccccccCEee----cC--CCccchhhHHHHhccCCCCCCCcc
Q 014069 367 GDLCAICQEKMHAPILL----QC--KHLFCEDCVSEWLERERTCPLCRA 409 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L----~C--gHiFc~~Cl~~wl~~~~tCPlCR~ 409 (431)
...|++|-....-.+.. .= .+..|..|-.+|-.....||.|-.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 34899999875332211 12 266888899999988889999965
No 153
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.53 E-value=1.2e+03 Score=28.35 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=9.9
Q ss_pred chHHHH----HHHHHHHHHHHH
Q 014069 240 PFWHAV----FIILVNDTMVRQ 257 (431)
Q Consensus 240 ~~~~~l----w~V~itd~ilr~ 257 (431)
++|++| -.|.+.|+++-.
T Consensus 1192 ssWN~LDgflv~vsviDilvs~ 1213 (1956)
T KOG2302|consen 1192 SSWNVLDGFLVAVSVIDILVSQ 1213 (1956)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH
Confidence 466654 234556666655
No 154
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=26.90 E-value=1.6e+02 Score=23.04 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhcccchhHHHHHHHHHHHHhheeeeeec
Q 014069 168 LQGFFVTVWITAVIFKSNDILRKQTALKGERKNYILFMIFIGFMFQVIGIYWWFR 222 (431)
Q Consensus 168 ~~gi~~~i~l~~t~~~aN~~i~~qValk~~rk~~~l~~i~~~~~~~i~~vy~~f~ 222 (431)
-.||....|+. +.++.++.....+.......+..++..++..+..+||.|.
T Consensus 13 T~GIY~l~W~y----~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k 63 (75)
T PF14018_consen 13 TCGIYGLYWLY----KIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYK 63 (75)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666655544 4556555553333234444555555555666777776553
No 155
>PF14353 CpXC: CpXC protein
Probab=26.74 E-value=68 Score=27.82 Aligned_cols=56 Identities=14% Similarity=0.212 Sum_probs=30.3
Q ss_pred cccccccccccCEeecCCCccchhhHHHHhcc---CCCCCCCccccCCCCCcccCCCCc
Q 014069 369 LCAICQEKMHAPILLQCKHLFCEDCVSEWLER---ERTCPLCRALVKPADLRSFGDGST 424 (431)
Q Consensus 369 ~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~---~~tCPlCR~~i~~~~l~~~~DGst 424 (431)
+|+-|...+...+-..-.-.--.+-....+.. ..+||.|...+.-.---.|.|..-
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCC
Confidence 58888888765543322222223333344433 348999988775443334444443
No 156
>KOG1341 consensus Na+/K+ transporter [Inorganic ion transport and metabolism]
Probab=26.21 E-value=2.1e+02 Score=32.18 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccch
Q 014069 156 SLLLLVVFVRQHLQGFFVTVWITAVIFKSNDILRKQTALKGERKN 200 (431)
Q Consensus 156 ~lILl~k~~~~H~~gi~~~i~l~~t~~~aN~~i~~qValk~~rk~ 200 (431)
-.||++.++.-|+.|+..++. +.+.-+.-++.|..++-+..
T Consensus 464 csil~vY~l~~nIvafV~llv----~i~t~k~~~eVv~~~gisp~ 504 (854)
T KOG1341|consen 464 CSILVVYFLGWNIVAFVTLLV----FIYTAKTSREVVRSKGISPG 504 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhcchhhhhhcccCCCCcc
Confidence 467788899999888765543 33344444555655554444
No 157
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.06 E-value=40 Score=39.52 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=32.8
Q ss_pred cCCcccccccccccCEeecCCC-----ccchhhHHHHhccCCCCCCCccccCCC
Q 014069 366 AGDLCAICQEKMHAPILLQCKH-----LFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgH-----iFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
....|+-|-..........||. .||.+|- +......||.|.......
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IEVEEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCcccc--CcCCCCcCCCCCCCCCcc
Confidence 3458999998865555667883 5999993 334446799998876543
No 158
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.92 E-value=52 Score=37.00 Aligned_cols=44 Identities=32% Similarity=0.591 Sum_probs=35.7
Q ss_pred cccccccccccCEeecCCC-ccchhhHHHHhc--c----CCCCCCCccccC
Q 014069 369 LCAICQEKMHAPILLQCKH-LFCEDCVSEWLE--R----ERTCPLCRALVK 412 (431)
Q Consensus 369 ~C~IC~e~~~~pv~L~CgH-iFc~~Cl~~wl~--~----~~tCPlCR~~i~ 412 (431)
.|+||-....-...-.||| .-|..|..+... . ...||.||..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999999888888889999 799999987653 2 446799998664
No 159
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.08 E-value=18 Score=35.86 Aligned_cols=44 Identities=32% Similarity=0.813 Sum_probs=34.4
Q ss_pred CCcccccccccc------cCEeec--------CCCccchhhHHHHhccC-CCCCCCccc
Q 014069 367 GDLCAICQEKMH------APILLQ--------CKHLFCEDCVSEWLERE-RTCPLCRAL 410 (431)
Q Consensus 367 ~d~C~IC~e~~~------~pv~L~--------CgHiFc~~Cl~~wl~~~-~tCPlCR~~ 410 (431)
+..|.||...+. .|..+. |+|..|..|+..-+.+. ..||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 357999988776 244556 99999999999987654 589999864
No 160
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=25.00 E-value=62 Score=21.08 Aligned_cols=34 Identities=21% Similarity=0.582 Sum_probs=20.4
Q ss_pred ccccccccccC--EeecCCCccchhhHHHHhccCCCCCCCcccc
Q 014069 370 CAICQEKMHAP--ILLQCKHLFCEDCVSEWLERERTCPLCRALV 411 (431)
Q Consensus 370 C~IC~e~~~~p--v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i 411 (431)
|..|.+.+... ....=+..||..| ..|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcC
Confidence 77777776653 2233356677665 4677776655
No 161
>PRK11595 DNA utilization protein GntX; Provisional
Probab=24.83 E-value=65 Score=30.94 Aligned_cols=38 Identities=21% Similarity=0.542 Sum_probs=21.6
Q ss_pred cccccccccccCEeecCCCccchhhHHHHhccCCCCCCCcccc
Q 014069 369 LCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALV 411 (431)
Q Consensus 369 ~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i 411 (431)
.|.+|...+... .+..|..|...+-.....||.|-.+.
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcccCcCccCCCcC
Confidence 588887655321 12367777666533234677776554
No 162
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.55 E-value=1.3e+02 Score=28.36 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=21.3
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
...|+.|...+. ..+-+....+||.|...+...+
T Consensus 113 ~y~C~~~~~r~s---------------fdeA~~~~F~Cp~Cg~~L~~~d 146 (176)
T COG1675 113 YYVCPNCHVKYS---------------FDEAMELGFTCPKCGEDLEEYD 146 (176)
T ss_pred ceeCCCCCCccc---------------HHHHHHhCCCCCCCCchhhhcc
Confidence 457777766544 1233445689999988776443
No 163
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=24.39 E-value=49 Score=32.41 Aligned_cols=28 Identities=25% Similarity=0.660 Sum_probs=22.3
Q ss_pred ccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 388 LFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 388 iFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
.-|..|..+.-.....||+|+..-...+
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccCC
Confidence 3688999988888999999988665443
No 164
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=24.39 E-value=77 Score=24.13 Aligned_cols=36 Identities=25% Similarity=0.579 Sum_probs=26.0
Q ss_pred CCccccccccc--ccCE--eecCCCccchhhHHHHhccCCCCCC
Q 014069 367 GDLCAICQEKM--HAPI--LLQCKHLFCEDCVSEWLERERTCPL 406 (431)
Q Consensus 367 ~d~C~IC~e~~--~~pv--~L~CgHiFc~~Cl~~wl~~~~tCPl 406 (431)
+..|++|-+.+ .+.+ -..||-.+|.+|... ...|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 45799999999 4454 357999999999633 455644
No 165
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.74 E-value=90 Score=28.02 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=21.8
Q ss_pred ccCCcccccccccccCEeecCCCccchh
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCED 392 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~ 392 (431)
..++.--||++.-+.-++-.|||.||..
T Consensus 55 pvg~hlfi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 55 PVGDHLFICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred ecCCcEEEEecccccEEEEeccccccCh
Confidence 3456667899887776788999999974
No 166
>PLN02189 cellulose synthase
Probab=23.19 E-value=71 Score=37.68 Aligned_cols=47 Identities=26% Similarity=0.742 Sum_probs=31.5
Q ss_pred cCCcccccccccccC----Eee---cCCCccchhhHHHHh-ccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAP----ILL---QCKHLFCEDCVSEWL-ERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p----v~L---~CgHiFc~~Cl~~wl-~~~~tCPlCR~~i~ 412 (431)
.+..|.||-++.... ... .|+---|..|..-=- +.++.||.|++..+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 456899999986422 223 355558999983211 23668999998776
No 167
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=23.01 E-value=72 Score=26.56 Aligned_cols=38 Identities=21% Similarity=0.432 Sum_probs=29.9
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
...|+-|...++--...| +..|+-.+..|..|+++++.
T Consensus 33 rS~C~~C~~~L~~~~lIP---------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIP---------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccccch---------HHHHHHhCCCCcccCCCCCh
Confidence 357999999887655555 56788889999999998863
No 168
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.61 E-value=29 Score=35.16 Aligned_cols=117 Identities=19% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhheeeeeeccCCcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhh
Q 014069 201 YILFMIFIGFMFQVIGIYWWFRSDDILYPLLMIPPSTIPPFWHAVFIILVNDTMVRQAAMAMK----------CLLLIYY 270 (431)
Q Consensus 201 ~~l~~i~~~~~~~i~~vy~~f~~~~l~~~Li~l~p~~~~~~~~~lw~V~itd~ilr~i~i~lK----------~lil~l~ 270 (431)
......+-.+...+..+.|+| |+|+.-+ -+-..++...++.-+++.++-|++| |+++++.
T Consensus 21 ~~a~l~~~~llll~ail~w~~---------iimsd~t-~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi 90 (381)
T PF05297_consen 21 PHASLLFGLLLLLVAILVWFF---------IIMSDLT-QGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMI 90 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHH---------HHHhccc-cchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q ss_pred ccCCCccccccCcchhhHHHHHHHHHHHcCcchhhhhhhcchhhhHHHHHHHHHHHHH
Q 014069 271 KNGRGHNFRRQGQILTLVEYALLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTF 328 (431)
Q Consensus 271 ~~~~~~~~~~~g~~l~~lE~~s~lyr~llpi~~w~~y~l~~~~g~lf~~ll~~lYl~~ 328 (431)
..--...|-..|+. .++-.+..++..++...+|+...+-..||..|=.++.+...++
T Consensus 91 ~lLv~~L~tLtGQ~-LF~Gi~~l~l~~lLaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~ 147 (381)
T PF05297_consen 91 VLLVSMLWTLTGQT-LFVGIVILFLCCLLALGVWFYMWLLRELGASFWTILAFCLAFL 147 (381)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
No 169
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=22.34 E-value=48 Score=27.23 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=21.3
Q ss_pred ccCCCCCCCccccCCCCCcccCCCC
Q 014069 399 ERERTCPLCRALVKPADLRSFGDGS 423 (431)
Q Consensus 399 ~~~~tCPlCR~~i~~~~l~~~~DGs 423 (431)
.....|+.|.+++..+..-.++||.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~ 100 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGH 100 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCe
Confidence 3467899999999988888999994
No 170
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.18 E-value=61 Score=26.20 Aligned_cols=30 Identities=30% Similarity=0.732 Sum_probs=22.0
Q ss_pred CCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 386 KHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 386 gHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
.|.||.+|....+ +..||.|-..+....++
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~RP~R 57 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVARPIR 57 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhcCcCC
Confidence 3789999998754 46899998776554443
No 171
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=21.91 E-value=67 Score=32.95 Aligned_cols=43 Identities=9% Similarity=-0.145 Sum_probs=35.1
Q ss_pred CCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCcccc
Q 014069 367 GDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALV 411 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i 411 (431)
..+|..|-+..-..+..+|+|- ||-+|.. +.-..+||.|....
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 3589999998888888899986 9999987 56678999996543
No 172
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.53 E-value=1.1e+02 Score=26.41 Aligned_cols=43 Identities=26% Similarity=0.668 Sum_probs=25.1
Q ss_pred cCCccccccccccc-----CEeecCCCccchhhHHHHhccCC--CCCCCcc
Q 014069 366 AGDLCAICQEKMHA-----PILLQCKHLFCEDCVSEWLERER--TCPLCRA 409 (431)
Q Consensus 366 ~~d~C~IC~e~~~~-----pv~L~CgHiFc~~Cl~~wl~~~~--tCPlCR~ 409 (431)
.+..|.+|...+.- ..-..|+|.+|..|-.. ..... .|.+|++
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 45689999987631 23457889999888543 11122 4666643
No 173
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=69 Score=36.25 Aligned_cols=45 Identities=27% Similarity=0.638 Sum_probs=31.4
Q ss_pred cCCcccccccccccCE----------eecCCCcc--------------------chhhHHHHhcc--------CCCCCCC
Q 014069 366 AGDLCAICQEKMHAPI----------LLQCKHLF--------------------CEDCVSEWLER--------ERTCPLC 407 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv----------~L~CgHiF--------------------c~~Cl~~wl~~--------~~tCPlC 407 (431)
+-..|.-|++++.+|. .+.||..| |..|.+++-+. ...||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 3458999999987762 45676554 88999887642 2369999
Q ss_pred ccc
Q 014069 408 RAL 410 (431)
Q Consensus 408 R~~ 410 (431)
.-.
T Consensus 180 GP~ 182 (750)
T COG0068 180 GPH 182 (750)
T ss_pred CCC
Confidence 543
No 174
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the