Query 014069
Match_columns 431
No_of_seqs 278 out of 1851
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.4 6E-13 2.1E-17 105.2 5.4 63 363-425 11-76 (78)
2 2djb_A Polycomb group ring fin 99.3 2E-12 6.9E-17 100.9 5.2 55 365-419 13-68 (72)
3 3ng2_A RNF4, snurf, ring finge 99.3 1.5E-12 5E-17 100.7 2.8 52 366-417 9-67 (71)
4 2d8t_A Dactylidin, ring finger 99.3 1.2E-12 4.1E-17 101.9 2.0 52 365-416 13-64 (71)
5 2ysl_A Tripartite motif-contai 99.2 5.3E-12 1.8E-16 98.2 4.7 52 365-416 18-72 (73)
6 2ea6_A Ring finger protein 4; 99.2 2.9E-12 1E-16 98.2 3.1 50 364-413 12-68 (69)
7 2xeu_A Ring finger protein 4; 99.2 3.1E-12 1.1E-16 96.6 2.6 51 367-417 3-60 (64)
8 1x4j_A Ring finger protein 38; 99.2 4E-12 1.4E-16 99.9 3.2 50 365-414 21-73 (75)
9 1iym_A EL5; ring-H2 finger, ub 99.2 6.9E-12 2.4E-16 92.3 4.0 47 366-412 4-54 (55)
10 2ecy_A TNF receptor-associated 99.2 8.7E-12 3E-16 95.5 4.5 52 365-416 13-65 (66)
11 2kiz_A E3 ubiquitin-protein li 99.2 9.5E-12 3.2E-16 95.9 4.3 51 364-414 11-64 (69)
12 2yur_A Retinoblastoma-binding 99.2 1.1E-11 3.8E-16 97.3 4.8 51 365-415 13-66 (74)
13 2ecn_A Ring finger protein 141 99.2 5.6E-12 1.9E-16 97.5 2.6 57 365-422 13-70 (70)
14 2ecw_A Tripartite motif-contai 99.2 1.5E-11 5.1E-16 97.7 5.0 53 365-417 17-75 (85)
15 2ecm_A Ring finger and CHY zin 99.2 9.9E-12 3.4E-16 91.4 3.5 47 366-412 4-54 (55)
16 1t1h_A Gspef-atpub14, armadill 99.2 1.5E-11 5.3E-16 97.0 4.6 52 366-417 7-59 (78)
17 1v87_A Deltex protein 2; ring- 99.2 1.5E-11 5.2E-16 103.9 4.8 61 366-427 24-107 (114)
18 2ct2_A Tripartite motif protei 99.2 1.3E-11 4.3E-16 99.2 3.9 58 365-422 13-77 (88)
19 2ecv_A Tripartite motif-contai 99.2 1.7E-11 5.8E-16 97.4 4.6 53 365-417 17-75 (85)
20 2csy_A Zinc finger protein 183 99.2 1.3E-11 4.4E-16 98.3 3.9 48 365-412 13-60 (81)
21 4ayc_A E3 ubiquitin-protein li 99.2 1E-11 3.4E-16 109.1 3.4 49 366-414 52-100 (138)
22 1chc_A Equine herpes virus-1 r 99.2 1.2E-11 4.2E-16 94.9 3.5 48 366-413 4-52 (68)
23 2ep4_A Ring finger protein 24; 99.2 1.6E-11 5.6E-16 95.9 4.0 49 365-413 13-64 (74)
24 2l0b_A E3 ubiquitin-protein li 99.2 1.3E-11 4.3E-16 101.0 3.4 48 366-413 39-89 (91)
25 2ecl_A Ring-box protein 2; RNF 99.1 1.1E-11 3.9E-16 99.3 2.8 49 366-414 14-77 (81)
26 2egp_A Tripartite motif-contai 99.1 7.7E-12 2.6E-16 98.6 1.7 53 365-417 10-69 (79)
27 3lrq_A E3 ubiquitin-protein li 99.1 1.3E-11 4.6E-16 102.6 2.3 52 366-417 21-74 (100)
28 3ztg_A E3 ubiquitin-protein li 99.1 4.2E-11 1.4E-15 97.4 4.4 48 365-412 11-61 (92)
29 2y43_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 99.6 3.1 52 365-416 20-72 (99)
30 3fl2_A E3 ubiquitin-protein li 99.1 4.5E-11 1.5E-15 102.8 3.5 49 365-413 50-99 (124)
31 1g25_A CDK-activating kinase a 99.0 1E-10 3.5E-15 89.2 4.2 52 367-418 3-60 (65)
32 2ysj_A Tripartite motif-contai 99.0 1.2E-10 4.2E-15 88.1 4.3 43 365-407 18-63 (63)
33 1jm7_A BRCA1, breast cancer ty 99.0 1E-10 3.5E-15 98.1 4.0 51 367-417 21-74 (112)
34 3dpl_R Ring-box protein 1; ubi 99.0 1.2E-10 4.1E-15 98.4 4.4 47 366-412 36-100 (106)
35 2ecj_A Tripartite motif-contai 99.0 1.3E-10 4.5E-15 86.1 4.0 43 365-407 13-58 (58)
36 2ckl_A Polycomb group ring fin 99.0 1.3E-10 4.4E-15 97.5 4.4 50 365-414 13-63 (108)
37 2kre_A Ubiquitin conjugation f 99.0 1.9E-10 6.4E-15 96.1 4.1 52 366-417 28-79 (100)
38 2kr4_A Ubiquitin conjugation f 99.0 1.6E-10 5.4E-15 93.6 3.5 52 366-417 13-64 (85)
39 4ap4_A E3 ubiquitin ligase RNF 99.0 2E-10 6.7E-15 98.5 3.8 53 366-418 6-65 (133)
40 1wgm_A Ubiquitin conjugation f 99.0 2.8E-10 9.5E-15 94.8 4.3 52 366-417 21-73 (98)
41 1z6u_A NP95-like ring finger p 99.0 2.4E-10 8E-15 102.2 3.8 49 366-414 77-126 (150)
42 3l11_A E3 ubiquitin-protein li 98.9 1.1E-10 3.6E-15 99.1 0.6 47 366-412 14-61 (115)
43 1rmd_A RAG1; V(D)J recombinati 98.9 2.5E-10 8.5E-15 96.9 2.6 51 366-416 22-73 (116)
44 3hct_A TNF receptor-associated 98.9 2.4E-10 8.1E-15 97.6 2.1 51 365-415 16-67 (118)
45 2ckl_B Ubiquitin ligase protei 98.9 2.9E-10 9.8E-15 102.5 2.3 47 367-413 54-102 (165)
46 2vje_B MDM4 protein; proto-onc 98.9 6.4E-10 2.2E-14 85.0 3.1 48 365-412 5-55 (63)
47 2vje_A E3 ubiquitin-protein li 98.9 6.9E-10 2.4E-14 85.1 3.2 47 366-412 7-56 (64)
48 4ap4_A E3 ubiquitin ligase RNF 98.9 3.4E-10 1.2E-14 97.0 1.5 54 364-417 69-129 (133)
49 4a0k_B E3 ubiquitin-protein li 98.9 2.4E-10 8.2E-15 98.3 0.2 48 366-413 47-112 (117)
50 2c2l_A CHIP, carboxy terminus 98.9 2.2E-09 7.6E-14 103.0 6.6 52 366-417 207-259 (281)
51 1jm7_B BARD1, BRCA1-associated 98.9 6.8E-10 2.3E-14 94.6 2.5 51 365-417 20-71 (117)
52 1bor_A Transcription factor PM 98.8 5.6E-10 1.9E-14 83.2 1.5 45 366-413 5-49 (56)
53 2d8s_A Cellular modulator of i 98.8 2.3E-09 7.7E-14 86.1 4.6 50 365-414 13-71 (80)
54 2y1n_A E3 ubiquitin-protein li 98.8 2E-09 6.7E-14 109.8 4.4 47 368-414 333-380 (389)
55 4ic3_A E3 ubiquitin-protein li 98.8 1.1E-09 3.7E-14 86.2 1.9 44 366-413 23-67 (74)
56 3knv_A TNF receptor-associated 98.8 1.3E-09 4.3E-14 96.5 2.0 49 365-413 29-78 (141)
57 1e4u_A Transcriptional repress 98.7 4.6E-09 1.6E-13 83.8 4.0 56 365-421 9-69 (78)
58 2yu4_A E3 SUMO-protein ligase 98.7 2E-09 6.7E-14 88.6 1.6 51 366-416 6-66 (94)
59 2ea5_A Cell growth regulator w 98.7 8.4E-09 2.9E-13 80.1 4.0 53 363-420 11-64 (68)
60 2f42_A STIP1 homology and U-bo 98.7 1.4E-08 4.9E-13 93.3 5.7 52 366-417 105-157 (179)
61 2ecg_A Baculoviral IAP repeat- 98.7 5.3E-09 1.8E-13 82.3 2.4 44 366-413 24-68 (75)
62 3hcs_A TNF receptor-associated 98.6 6.5E-09 2.2E-13 93.8 1.8 51 365-415 16-67 (170)
63 2yho_A E3 ubiquitin-protein li 98.6 6.9E-09 2.4E-13 82.8 1.5 55 366-425 17-72 (79)
64 2bay_A PRE-mRNA splicing facto 98.5 2.4E-08 8.4E-13 76.0 2.3 55 368-422 4-59 (61)
65 2ct0_A Non-SMC element 1 homol 98.5 9.2E-08 3.1E-12 75.7 4.9 48 365-412 13-63 (74)
66 3htk_C E3 SUMO-protein ligase 98.4 1.2E-07 4.1E-12 91.7 3.8 51 367-417 181-236 (267)
67 3t6p_A Baculoviral IAP repeat- 98.3 9.7E-08 3.3E-12 96.2 1.6 43 366-412 294-337 (345)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.2 7.3E-07 2.5E-11 67.6 3.5 48 365-412 4-58 (60)
69 1wim_A KIAA0161 protein; ring 98.1 3.8E-07 1.3E-11 74.5 -0.0 50 367-416 5-69 (94)
70 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.2E-06 4.2E-11 87.5 1.7 47 366-412 307-372 (381)
71 3vk6_A E3 ubiquitin-protein li 97.6 3.2E-05 1.1E-09 64.1 3.5 44 369-412 3-48 (101)
72 3nw0_A Non-structural maintena 96.8 0.00095 3.3E-08 63.7 5.1 48 367-414 180-230 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 93.1 0.041 1.4E-06 44.6 2.3 31 367-397 3-36 (101)
74 3m62_A Ubiquitin conjugation f 92.2 0.062 2.1E-06 60.3 3.0 51 367-417 891-942 (968)
75 2ko5_A Ring finger protein Z; 91.9 0.077 2.6E-06 43.4 2.4 45 368-414 29-74 (99)
76 2lri_C Autoimmune regulator; Z 82.5 0.78 2.7E-05 34.9 2.8 48 365-412 10-61 (66)
77 2cs3_A Protein C14ORF4, MY039 77.1 2 6.9E-05 34.1 3.5 35 366-400 14-52 (93)
78 1wil_A KIAA1045 protein; ring 72.0 2.7 9.2E-05 33.7 3.1 32 365-397 13-47 (89)
79 1mm2_A MI2-beta; PHD, zinc fin 63.8 2 6.9E-05 31.8 0.8 48 364-411 6-57 (61)
80 3o36_A Transcription intermedi 61.7 3.3 0.00011 37.1 2.0 47 366-412 3-53 (184)
81 3u5n_A E3 ubiquitin-protein li 61.7 1.9 6.3E-05 39.6 0.3 48 365-412 5-56 (207)
82 3i2d_A E3 SUMO-protein ligase 57.4 5.3 0.00018 40.2 2.8 50 367-417 249-304 (371)
83 4fo9_A E3 SUMO-protein ligase 54.6 6.3 0.00021 39.5 2.8 50 367-417 215-270 (360)
84 2l5u_A Chromodomain-helicase-D 53.6 4.7 0.00016 29.8 1.3 42 365-409 9-57 (61)
85 1z60_A TFIIH basal transcripti 53.4 8.7 0.0003 28.6 2.7 40 368-407 16-58 (59)
86 3mpx_A FYVE, rhogef and PH dom 50.4 6 0.0002 39.7 1.9 46 367-412 375-431 (434)
87 2ro1_A Transcription intermedi 49.4 4.7 0.00016 36.5 0.9 45 367-411 2-50 (189)
88 1xwh_A Autoimmune regulator; P 49.3 2.5 8.4E-05 31.8 -0.9 47 365-411 6-56 (66)
89 2co8_A NEDD9 interacting prote 48.0 16 0.00055 28.0 3.7 42 366-415 14-56 (82)
90 3t7l_A Zinc finger FYVE domain 46.8 9.3 0.00032 30.4 2.1 47 365-411 18-74 (90)
91 1joc_A EEA1, early endosomal a 45.3 15 0.00051 31.1 3.3 29 368-396 70-102 (125)
92 2k16_A Transcription initiatio 42.9 5.4 0.00018 30.4 0.1 47 367-413 18-71 (75)
93 1wig_A KIAA1808 protein; LIM d 42.8 21 0.00072 26.6 3.5 37 368-412 6-42 (73)
94 2l43_A N-teminal domain from h 42.4 6.3 0.00021 31.4 0.5 52 365-416 23-81 (88)
95 1zbd_B Rabphilin-3A; G protein 42.3 15 0.00053 31.5 3.0 30 366-395 54-88 (134)
96 1fp0_A KAP-1 corepressor; PHD 41.7 9.2 0.00031 30.7 1.3 44 364-410 22-72 (88)
97 1f62_A Transcription factor WS 40.7 11 0.00038 26.3 1.6 41 369-409 2-49 (51)
98 1m3v_A FLIN4, fusion of the LI 39.9 18 0.00061 29.8 3.0 49 369-417 34-85 (122)
99 1vfy_A Phosphatidylinositol-3- 39.2 13 0.00045 28.3 1.8 29 368-396 12-44 (73)
100 2yql_A PHD finger protein 21A; 38.7 3.1 0.0001 30.2 -1.8 45 365-409 7-55 (56)
101 3zyq_A Hepatocyte growth facto 38.4 22 0.00076 32.9 3.6 45 367-411 164-220 (226)
102 2zet_C Melanophilin; complex, 38.4 29 0.001 30.4 4.2 29 366-394 67-100 (153)
103 1z2q_A LM5-1; membrane protein 37.0 13 0.00044 29.1 1.5 46 367-412 21-78 (84)
104 1x64_A Alpha-actinin-2 associa 36.6 33 0.0011 26.4 3.9 41 367-415 25-65 (89)
105 1wev_A Riken cDNA 1110020M19; 35.3 7.2 0.00025 31.0 -0.3 48 365-412 14-74 (88)
106 2lbm_A Transcriptional regulat 35.1 27 0.00091 30.4 3.3 46 364-409 60-116 (142)
107 3lqh_A Histone-lysine N-methyl 35.0 14 0.00047 33.5 1.6 45 367-411 2-64 (183)
108 2d8x_A Protein pinch; LIM doma 34.9 24 0.00081 25.8 2.6 39 368-414 6-44 (70)
109 2cor_A Pinch protein; LIM doma 34.9 26 0.00088 26.5 2.9 40 367-414 15-54 (79)
110 2d8z_A Four and A half LIM dom 34.7 37 0.0013 24.6 3.8 39 368-414 6-44 (70)
111 2puy_A PHD finger protein 21A; 34.1 2.8 9.7E-05 30.8 -2.7 46 366-411 4-53 (60)
112 1dvp_A HRS, hepatocyte growth 33.8 12 0.00043 34.3 1.1 30 367-396 161-194 (220)
113 1wep_A PHF8; structural genomi 33.6 23 0.0008 27.2 2.5 56 368-424 13-77 (79)
114 1v6g_A Actin binding LIM prote 33.4 26 0.00087 26.4 2.7 41 367-415 15-55 (81)
115 1y02_A CARP2, FYVE-ring finger 33.4 3.4 0.00012 35.1 -2.6 44 367-410 19-66 (120)
116 1x4u_A Zinc finger, FYVE domai 32.9 15 0.0005 28.7 1.2 30 367-396 14-47 (84)
117 2yw8_A RUN and FYVE domain-con 32.7 16 0.00056 28.4 1.5 31 367-397 19-53 (82)
118 2dar_A PDZ and LIM domain prot 32.4 33 0.0011 26.5 3.2 41 367-415 25-65 (90)
119 1wyh_A SLIM 2, skeletal muscle 31.9 37 0.0013 24.7 3.3 40 367-414 5-46 (72)
120 2dlo_A Thyroid receptor-intera 31.6 30 0.001 26.1 2.8 40 367-414 15-54 (81)
121 2e6r_A Jumonji/ARID domain-con 31.3 7.3 0.00025 31.3 -0.9 59 366-424 15-82 (92)
122 1nyp_A Pinch protein; LIM doma 31.3 35 0.0012 24.5 3.0 40 367-414 5-44 (66)
123 1wfk_A Zinc finger, FYVE domai 31.1 17 0.00057 28.9 1.3 46 367-412 9-65 (88)
124 1x6a_A LIMK-2, LIM domain kina 31.1 37 0.0013 25.4 3.3 38 368-413 16-53 (81)
125 2d8v_A Zinc finger FYVE domain 30.2 19 0.00066 27.3 1.4 32 366-398 7-39 (67)
126 1weo_A Cellulose synthase, cat 30.0 1.1E+02 0.0037 24.6 5.8 47 366-412 15-69 (93)
127 1x62_A C-terminal LIM domain p 28.0 32 0.0011 25.8 2.4 39 367-413 15-53 (79)
128 1x4l_A Skeletal muscle LIM-pro 28.0 52 0.0018 23.9 3.6 40 367-414 5-48 (72)
129 2jne_A Hypothetical protein YF 27.6 4.6 0.00016 33.1 -2.6 41 367-412 32-72 (101)
130 3ql9_A Transcriptional regulat 27.4 40 0.0014 28.8 3.1 45 365-409 55-110 (129)
131 2gmg_A Hypothetical protein PF 27.3 14 0.00049 30.6 0.2 28 379-411 67-94 (105)
132 2o35_A Hypothetical protein DU 27.2 21 0.00073 29.3 1.2 13 388-400 42-54 (105)
133 3fyb_A Protein of unknown func 27.0 22 0.00074 29.2 1.2 13 388-400 41-53 (104)
134 2cu8_A Cysteine-rich protein 2 26.6 43 0.0015 24.8 2.9 40 367-414 9-49 (76)
135 1x63_A Skeletal muscle LIM-pro 26.3 59 0.002 24.3 3.7 40 367-414 15-56 (82)
136 2fiy_A Protein FDHE homolog; F 26.0 12 0.00042 36.6 -0.5 46 365-410 180-231 (309)
137 2l3k_A Rhombotin-2, linker, LI 25.8 42 0.0014 27.6 2.9 47 368-416 37-85 (123)
138 2ysm_A Myeloid/lymphoid or mix 25.5 18 0.00062 29.5 0.5 35 365-399 5-42 (111)
139 1wen_A Inhibitor of growth fam 25.4 56 0.0019 24.7 3.3 42 367-412 16-67 (71)
140 1x68_A FHL5 protein; four-and- 25.3 48 0.0016 24.6 2.9 39 367-413 5-47 (76)
141 1x4k_A Skeletal muscle LIM-pro 24.9 48 0.0016 24.1 2.8 39 368-414 6-46 (72)
142 2cur_A Skeletal muscle LIM-pro 23.6 44 0.0015 24.1 2.4 37 368-412 6-42 (69)
143 2xjy_A Rhombotin-2; oncoprotei 23.5 48 0.0016 27.2 2.8 47 368-414 30-79 (131)
144 1wd2_A Ariadne-1 protein homol 23.1 15 0.00051 27.1 -0.4 33 368-400 7-47 (60)
145 1we9_A PHD finger family prote 23.0 11 0.00038 27.7 -1.1 44 366-409 5-57 (64)
146 1rut_X Flinc4, fusion protein 22.1 31 0.0011 30.5 1.5 46 368-413 33-81 (188)
147 2cuq_A Four and A half LIM dom 20.9 72 0.0025 23.6 3.2 39 368-414 16-54 (80)
148 1weu_A Inhibitor of growth fam 20.6 59 0.002 26.0 2.7 40 368-411 37-86 (91)
149 2jmo_A Parkin; IBR, E3 ligase, 20.5 12 0.00043 28.9 -1.4 20 384-405 55-74 (80)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35 E-value=6e-13 Score=105.15 Aligned_cols=63 Identities=30% Similarity=0.703 Sum_probs=54.9
Q ss_pred hhccCCcccccccccccC---EeecCCCccchhhHHHHhccCCCCCCCccccCCCCCcccCCCCcc
Q 014069 363 VNAAGDLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTS 425 (431)
Q Consensus 363 ~~~~~d~C~IC~e~~~~p---v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~~DGsts 425 (431)
....+..|+||++.+.++ ..++|+|.||..|+.+|++...+||+||+.+...++..-..|.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~ 76 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTG 76 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCSSCTT
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCCCCCC
Confidence 334567999999999765 467999999999999999999999999999999988888888775
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2e-12 Score=100.89 Aligned_cols=55 Identities=25% Similarity=0.606 Sum_probs=48.6
Q ss_pred ccCCcccccccccccCEee-cCCCccchhhHHHHhccCCCCCCCccccCCCCCccc
Q 014069 365 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSF 419 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~ 419 (431)
+.+..|+||++.+.+|+.+ +|||.||..|+..|++.+.+||+||+.+...+....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 3456899999999999987 999999999999999988999999999987765443
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=1.5e-12 Score=100.72 Aligned_cols=52 Identities=27% Similarity=0.728 Sum_probs=47.1
Q ss_pred cCCcccccccccccC-------EeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p-------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
++..|+||++.+.++ +.++|||.||..|+.+|++.+.+||+||+.+..++++
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 67 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhee
Confidence 456899999999887 8899999999999999999999999999999877654
No 4
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-12 Score=101.92 Aligned_cols=52 Identities=35% Similarity=0.636 Sum_probs=47.0
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 416 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l 416 (431)
..+..|+||++.+.+++.++|||.||..|+..|+....+||+||+.+..+++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 3457899999999999999999999999999999998999999999876543
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.3e-12 Score=98.16 Aligned_cols=52 Identities=29% Similarity=0.783 Sum_probs=46.3
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhc---cCCCCCCCccccCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---RERTCPLCRALVKPADL 416 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~---~~~tCPlCR~~i~~~~l 416 (431)
..+..|+||++.+.+|+.++|||.||..|+..|++ ....||+||+.+..+++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 44679999999999999999999999999999996 45689999999987765
No 6
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.9e-12 Score=98.19 Aligned_cols=50 Identities=28% Similarity=0.759 Sum_probs=44.7
Q ss_pred hccCCcccccccccccC-------EeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 364 NAAGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~p-------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
...+..|+||++.+.++ +.++|||.||..|+..|+..+.+||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999999887 889999999999999999999999999998864
No 7
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.22 E-value=3.1e-12 Score=96.58 Aligned_cols=51 Identities=27% Similarity=0.723 Sum_probs=46.1
Q ss_pred CCcccccccccccC-------EeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~p-------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
+..|+||++.+.++ +.++|||.||..|+.+|++++.+||+||+.+..+++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 46899999999876 7899999999999999999999999999999877654
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4e-12 Score=99.85 Aligned_cols=50 Identities=38% Similarity=0.936 Sum_probs=44.6
Q ss_pred ccCCcccccccccccC---EeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 365 AAGDLCAICQEKMHAP---ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~p---v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..+..|+||++.+..+ +.++|+|.||..|+..|+..+.+||+||+.+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3567899999999877 6789999999999999999999999999988653
No 9
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.21 E-value=6.9e-12 Score=92.33 Aligned_cols=47 Identities=40% Similarity=0.904 Sum_probs=41.9
Q ss_pred cCCccccccccccc---CEeec-CCCccchhhHHHHhccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHA---PILLQ-CKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~---pv~L~-CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
++..|+||++.+.+ +..++ |+|.||..|+.+|++++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45689999999987 67777 9999999999999999999999998764
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.7e-12 Score=95.52 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=45.9
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhc-cCCCCCCCccccCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKPADL 416 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~-~~~tCPlCR~~i~~~~l 416 (431)
.++..|+||++.+.+|+.++|||.||..|+..|+. ...+||+||+.+..+++
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 34568999999999999999999999999999994 56789999999987653
No 11
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=9.5e-12 Score=95.92 Aligned_cols=51 Identities=31% Similarity=0.815 Sum_probs=43.7
Q ss_pred hccCCcccccccccc---cCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 364 NAAGDLCAICQEKMH---APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~---~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...+..|+||++.+. .++.++|+|.||..|+..|+....+||+||+.+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999885 346799999999999999999989999999998643
No 12
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=97.34 Aligned_cols=51 Identities=27% Similarity=0.740 Sum_probs=44.3
Q ss_pred ccCCcccccccccccCEeec-CCCccchhhHHHHhccC--CCCCCCccccCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQ-CKHLFCEDCVSEWLERE--RTCPLCRALVKPAD 415 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~-CgHiFc~~Cl~~wl~~~--~tCPlCR~~i~~~~ 415 (431)
..+..|+||++.+.+|+.++ |||.||..|+..|+... .+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34568999999999999999 99999999999999764 68999999865443
No 13
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=5.6e-12 Score=97.48 Aligned_cols=57 Identities=32% Similarity=0.894 Sum_probs=48.1
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCC-CcccCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD-LRSFGDG 422 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~-l~~~~DG 422 (431)
..+..|+||++.+.+ +.++|+|.||..|+..|+.+..+||+||+.+...+ ...+.||
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~G 70 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSSG 70 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCCCC
Confidence 346789999999999 99999999999999999999999999999997554 2334444
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=1.5e-11 Score=97.74 Aligned_cols=53 Identities=30% Similarity=0.760 Sum_probs=47.2
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhcc------CCCCCCCccccCCCCCc
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER------ERTCPLCRALVKPADLR 417 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~------~~tCPlCR~~i~~~~l~ 417 (431)
..+..|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+..++++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 346789999999999999999999999999999987 67899999999876554
No 15
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.17 E-value=9.9e-12 Score=91.36 Aligned_cols=47 Identities=34% Similarity=0.772 Sum_probs=42.1
Q ss_pred cCCccccccccccc----CEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~----pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.+..|+||++.+.+ ++.++|+|.||..|+.+|+....+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999999865 678999999999999999998899999999874
No 16
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.17 E-value=1.5e-11 Score=96.98 Aligned_cols=52 Identities=23% Similarity=0.508 Sum_probs=46.8
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc-CCCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l~ 417 (431)
++..|+||++.+.+|+.++|||.||..|+..|+.. ..+||.||+.+...++.
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 45689999999999999999999999999999987 77899999999866554
No 17
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.17 E-value=1.5e-11 Score=103.94 Aligned_cols=61 Identities=23% Similarity=0.508 Sum_probs=48.4
Q ss_pred cCCcccccccccccCE------------------eecCCCccchhhHHHHh-----ccCCCCCCCccccCCCCCcccCCC
Q 014069 366 AGDLCAICQEKMHAPI------------------LLQCKHLFCEDCVSEWL-----ERERTCPLCRALVKPADLRSFGDG 422 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv------------------~L~CgHiFc~~Cl~~wl-----~~~~tCPlCR~~i~~~~l~~~~DG 422 (431)
.++.|+||++.+.++. .++|+|.||..||..|+ ....+||+||+.+.... -.-++|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~-g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT-GTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS-SSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC-CCCCCC
Confidence 3568999999997653 78999999999999999 45679999999987553 445667
Q ss_pred Ccccc
Q 014069 423 STSLL 427 (431)
Q Consensus 423 sts~~ 427 (431)
.++.+
T Consensus 103 ~m~~~ 107 (114)
T 1v87_A 103 KMEVF 107 (114)
T ss_dssp SCCCS
T ss_pred eEEEE
Confidence 76644
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=99.20 Aligned_cols=58 Identities=29% Similarity=0.724 Sum_probs=49.2
Q ss_pred ccCCccccccccccc----CEeecCCCccchhhHHHHhccC---CCCCCCccccCCCCCcccCCC
Q 014069 365 AAGDLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERE---RTCPLCRALVKPADLRSFGDG 422 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~----pv~L~CgHiFc~~Cl~~wl~~~---~tCPlCR~~i~~~~l~~~~DG 422 (431)
..+..|+||++.+.+ |+.++|||.||..|+..|+... ..||+||+.+...++....+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n 77 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDN 77 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEEC
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHH
Confidence 445689999999998 9999999999999999999875 799999999987766554443
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.7e-11 Score=97.40 Aligned_cols=53 Identities=34% Similarity=0.889 Sum_probs=47.1
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhcc------CCCCCCCccccCCCCCc
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER------ERTCPLCRALVKPADLR 417 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~------~~tCPlCR~~i~~~~l~ 417 (431)
..+..|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+..++++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 346789999999999999999999999999999976 77999999999876543
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=98.32 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=44.5
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.....|+||++.+.+|+.++|||.||..|+..|+....+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 345689999999999999999999999999999998899999999986
No 21
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.16 E-value=1e-11 Score=109.12 Aligned_cols=49 Identities=37% Similarity=0.945 Sum_probs=45.0
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
.+..|+||++.+.+|+.++|||.||..|+..|+....+||+||+++...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 3457999999999999999999999999999999999999999998643
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.16 E-value=1.2e-11 Score=94.89 Aligned_cols=48 Identities=35% Similarity=0.937 Sum_probs=43.8
Q ss_pred cCCcccccccccccC-EeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHAP-ILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p-v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
.+..|+||++.+.++ +.++|||.||..|+..|+....+||+||+++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 457899999999987 789999999999999999988999999999863
No 23
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=95.86 Aligned_cols=49 Identities=37% Similarity=0.873 Sum_probs=43.0
Q ss_pred ccCCcccccccccccCE---eecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 365 AAGDLCAICQEKMHAPI---LLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv---~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
..++.|+||++.+.++. .++|+|.||..|+.+|++.+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 45678999999997664 45999999999999999988999999999864
No 24
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=101.02 Aligned_cols=48 Identities=38% Similarity=0.898 Sum_probs=43.2
Q ss_pred cCCccccccccccc---CEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~---pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
.+..|+||++.+.. ++.++|+|.||..|+..|+..+.+||+||+.+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999999877 6789999999999999999999999999998864
No 25
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-11 Score=99.30 Aligned_cols=49 Identities=31% Similarity=0.771 Sum_probs=41.6
Q ss_pred cCCccccccccccc--------------CEee-cCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 366 AGDLCAICQEKMHA--------------PILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 366 ~~d~C~IC~e~~~~--------------pv~L-~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
.++.|+||++.+.+ ++.+ +|+|.||..|+.+|+.++.+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 46789999999865 3444 5999999999999999999999999988644
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.14 E-value=7.7e-12 Score=98.60 Aligned_cols=53 Identities=26% Similarity=0.674 Sum_probs=46.6
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhcc-------CCCCCCCccccCCCCCc
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-------ERTCPLCRALVKPADLR 417 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-------~~tCPlCR~~i~~~~l~ 417 (431)
..+..|+||++.+.+|+.++|||.||..|+..|+.. ...||.||..+..++++
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 346789999999999999999999999999999976 56899999999866543
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.12 E-value=1.3e-11 Score=102.58 Aligned_cols=52 Identities=35% Similarity=0.775 Sum_probs=46.5
Q ss_pred cCCcccccccccccCEe-ecCCCccchhhHHHHhccC-CCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLERE-RTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~~-~tCPlCR~~i~~~~l~ 417 (431)
.+..|+||++.+.+|+. ++|||.||..|+..|+... .+||+||.++..+++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 45689999999999999 9999999999999999887 6999999999766554
No 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=4.2e-11 Score=97.42 Aligned_cols=48 Identities=29% Similarity=0.772 Sum_probs=42.7
Q ss_pred ccCCcccccccccccCEeec-CCCccchhhHHHHhcc--CCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILLQ-CKHLFCEDCVSEWLER--ERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~-CgHiFc~~Cl~~wl~~--~~tCPlCR~~i~ 412 (431)
..+..|+||++.+.+|+.++ |||.||..|+..|+.. ...||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44578999999999999999 9999999999999964 358999999973
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.09 E-value=3.2e-11 Score=99.64 Aligned_cols=52 Identities=31% Similarity=0.745 Sum_probs=46.4
Q ss_pred ccCCcccccccccccCEee-cCCCccchhhHHHHhccCCCCCCCccccCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPADL 416 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l 416 (431)
..+..|+||++.+.+|+.+ +|||.||..|+..|+....+||.||..+...++
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence 3456899999999999988 899999999999999998999999999876543
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.07 E-value=4.5e-11 Score=102.82 Aligned_cols=49 Identities=31% Similarity=0.691 Sum_probs=43.9
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCC-CCCCCccccCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVKP 413 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~-tCPlCR~~i~~ 413 (431)
..+..|+||++.+.+|+.++|||.||..|+..|+.... .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 34568999999999999999999999999999998544 89999999975
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=1e-10 Score=89.18 Aligned_cols=52 Identities=29% Similarity=0.747 Sum_probs=44.0
Q ss_pred CCccccccc-ccccC----EeecCCCccchhhHHHHhcc-CCCCCCCccccCCCCCcc
Q 014069 367 GDLCAICQE-KMHAP----ILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLRS 418 (431)
Q Consensus 367 ~d~C~IC~e-~~~~p----v~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l~~ 418 (431)
+..|+||++ .+.+| +.++|||.||..|+.+|+.+ ...||+||+.+..++++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 457999999 88887 46899999999999999765 468999999998777643
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=88.13 Aligned_cols=43 Identities=33% Similarity=0.878 Sum_probs=39.0
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhc---cCCCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---RERTCPLC 407 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~---~~~tCPlC 407 (431)
..+..|+||++.+.+|+.++|||.||..|+..|++ ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45678999999999999999999999999999997 45689998
No 33
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=1e-10 Score=98.14 Aligned_cols=51 Identities=31% Similarity=0.827 Sum_probs=45.4
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCC---CCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER---TCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~---tCPlCR~~i~~~~l~ 417 (431)
...|+||++.+.+|+.++|||.||..|+..|+.... .||.||..+...++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ 74 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence 457999999999999999999999999999998653 899999999876654
No 34
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.03 E-value=1.2e-10 Score=98.43 Aligned_cols=47 Identities=32% Similarity=0.675 Sum_probs=41.7
Q ss_pred cCCcccccccccccC------------------EeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAP------------------ILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p------------------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.++.|+||++.+.++ +.++|+|.||..|+..|+.++.+||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 467899999998765 45899999999999999999999999999864
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=86.06 Aligned_cols=43 Identities=35% Similarity=1.148 Sum_probs=38.4
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhc---cCCCCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---RERTCPLC 407 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~---~~~tCPlC 407 (431)
.++..|+||++.+.+|+.++|||.||..|+..|+. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45678999999999999999999999999999954 56789998
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.03 E-value=1.3e-10 Score=97.54 Aligned_cols=50 Identities=26% Similarity=0.777 Sum_probs=45.8
Q ss_pred ccCCcccccccccccCEee-cCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 365 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..+..|+||++.+.+|+.+ +|||.||..|+..|+....+||.||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4567899999999999998 9999999999999999989999999998754
No 37
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.00 E-value=1.9e-10 Score=96.14 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=47.6
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
.+..|+||++.|.+|+.++|||.||..||..|+....+||.||.++...++.
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 3568999999999999999999999999999999888999999999876654
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.99 E-value=1.6e-10 Score=93.60 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=47.0
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
.+..|+||++.|.+|+.++|||.||..||..|+....+||.||.++...++.
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLE 64 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcc
Confidence 4568999999999999999999999999999999888999999998765543
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.98 E-value=2e-10 Score=98.48 Aligned_cols=53 Identities=26% Similarity=0.716 Sum_probs=47.8
Q ss_pred cCCcccccccccccC-------EeecCCCccchhhHHHHhccCCCCCCCccccCCCCCcc
Q 014069 366 AGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLRS 418 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p-------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~ 418 (431)
++..|+||++.+.+| +.++|||.||..|+.+|++.+.+||+||+.+..+++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 456899999999988 89999999999999999999999999999998776644
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.97 E-value=2.8e-10 Score=94.75 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=47.7
Q ss_pred cCCcccccccccccCEeecCC-CccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAPILLQCK-HLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~Cg-HiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
.+..|+||++.|++|+.++|| |.||..||..|+....+||+||.++...++.
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence 456899999999999999999 9999999999999888999999999876654
No 41
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.96 E-value=2.4e-10 Score=102.16 Aligned_cols=49 Identities=29% Similarity=0.723 Sum_probs=44.6
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhccCC-CCCCCccccCCC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVKPA 414 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~-tCPlCR~~i~~~ 414 (431)
.+..|+||++.+.+|+.++|||.||..|+..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4568999999999999999999999999999998754 899999999865
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.94 E-value=1.1e-10 Score=99.05 Aligned_cols=47 Identities=34% Similarity=0.855 Sum_probs=42.9
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc-CCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~ 412 (431)
++..|+||++.+.+|+.++|||.||..|+..|+.. ..+||+||..+.
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 35689999999999999999999999999999976 668999999885
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.93 E-value=2.5e-10 Score=96.91 Aligned_cols=51 Identities=37% Similarity=0.808 Sum_probs=46.0
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc-CCCCCCCccccCCCCC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADL 416 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l 416 (431)
.+..|+||++.+.+|+.++|||.||..|+..|+.. ..+||.||.++...++
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 45689999999999999999999999999999986 6799999999876554
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.92 E-value=2.4e-10 Score=97.62 Aligned_cols=51 Identities=20% Similarity=0.578 Sum_probs=45.3
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCC-CCCCCccccCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVKPAD 415 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~-tCPlCR~~i~~~~ 415 (431)
..+..|+||++.+.+|+.++|||.||..|+..|+.... +||+||..+...+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 34568999999999999999999999999999998755 9999999987654
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=2.9e-10 Score=102.46 Aligned_cols=47 Identities=30% Similarity=0.815 Sum_probs=42.8
Q ss_pred CCcccccccccccCEee-cCCCccchhhHHHHhcc-CCCCCCCccccCC
Q 014069 367 GDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLER-ERTCPLCRALVKP 413 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~ 413 (431)
+..|+||++.+.+|+.+ +|||.||..|+..|+.. ...||+||..+..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45899999999999987 99999999999999987 7789999999854
No 46
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.89 E-value=6.4e-10 Score=85.00 Aligned_cols=48 Identities=19% Similarity=0.603 Sum_probs=43.4
Q ss_pred ccCCcccccccccccCEee--cCCCc-cchhhHHHHhccCCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILL--QCKHL-FCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L--~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
+.+..|.||++...+++.+ ||||. ||.+|...|.++...||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4457899999999999877 99998 999999999988889999999985
No 47
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.88 E-value=6.9e-10 Score=85.08 Aligned_cols=47 Identities=30% Similarity=0.737 Sum_probs=43.0
Q ss_pred cCCcccccccccccCEee--cCCCc-cchhhHHHHhccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPILL--QCKHL-FCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L--~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
++..|.||++...+++.+ ||||. ||.+|+..|.+....||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999999999977 99999 899999999998889999999885
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=3.4e-10 Score=97.00 Aligned_cols=54 Identities=26% Similarity=0.710 Sum_probs=47.7
Q ss_pred hccCCcccccccccccC-------EeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 364 NAAGDLCAICQEKMHAP-------ILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~p-------v~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
.+++..|+||++.+.++ +.++|||.||..|+.+|++..++||+||+.+..+++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence 34567899999999876 8899999999999999999999999999999876653
No 49
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.87 E-value=2.4e-10 Score=98.31 Aligned_cols=48 Identities=31% Similarity=0.632 Sum_probs=1.0
Q ss_pred cCCcccccccccccCE------------------eecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHAPI------------------LLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv------------------~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
.++.|+||++.+.++. .++|+|.||..|+.+|+..+.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 4579999999987631 25899999999999999999999999998653
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=2.2e-09 Score=102.96 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=45.4
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc-CCCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER-ERTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l~ 417 (431)
....|+||++.|.+|+.++|||.||..||..|+.. ..+||.||.++...++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence 45689999999999999999999999999999986 44599999999765543
No 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=6.8e-10 Score=94.59 Aligned_cols=51 Identities=31% Similarity=0.791 Sum_probs=44.9
Q ss_pred ccCCcccccccccccCEee-cCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 365 AAGDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
..+..|+||++.+.+|+.+ +|||.||..|+..|+. ..||.||..+...+++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence 3457899999999999999 9999999999999988 7899999998755543
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=5.6e-10 Score=83.16 Aligned_cols=45 Identities=31% Similarity=0.682 Sum_probs=39.8
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
++..|+||++.+.+|+.++|||.||..|+..| ...||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence 45689999999999999999999999998773 5689999998864
No 53
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=86.12 Aligned_cols=50 Identities=26% Similarity=0.812 Sum_probs=41.8
Q ss_pred ccCCcccccccccc--cCEeecCC-----CccchhhHHHHhccC--CCCCCCccccCCC
Q 014069 365 AAGDLCAICQEKMH--APILLQCK-----HLFCEDCVSEWLERE--RTCPLCRALVKPA 414 (431)
Q Consensus 365 ~~~d~C~IC~e~~~--~pv~L~Cg-----HiFc~~Cl~~wl~~~--~tCPlCR~~i~~~ 414 (431)
..++.|.||++++. ++..+||+ |.||..|+.+|+..+ .+||+||..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34678999998874 56788997 999999999999764 5899999998644
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.81 E-value=2e-09 Score=109.79 Aligned_cols=47 Identities=36% Similarity=0.952 Sum_probs=43.6
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhc-cCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLE-RERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~-~~~tCPlCR~~i~~~ 414 (431)
..|+||++.+.+++.++|||.||..|+..|+. ...+||+||+++...
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 58999999999999999999999999999998 678999999998754
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.80 E-value=1.1e-09 Score=86.21 Aligned_cols=44 Identities=30% Similarity=0.841 Sum_probs=40.2
Q ss_pred cCCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
++..|+||++.+.+++.+||||. ||..|+..| ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 45689999999999999999999 999999988 889999998863
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.79 E-value=1.3e-09 Score=96.49 Aligned_cols=49 Identities=27% Similarity=0.598 Sum_probs=43.4
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccCC-CCCCCccccCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERER-TCPLCRALVKP 413 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~-tCPlCR~~i~~ 413 (431)
+.+..|+||++.+.+|+.++|||.||..|+..|+.... +||.||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 44568999999999999999999999999999998654 89999997643
No 57
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.75 E-value=4.6e-09 Score=83.84 Aligned_cols=56 Identities=18% Similarity=0.414 Sum_probs=43.1
Q ss_pred ccCCcccccccccc--cCEeec--CCCccchhhHHHHhcc-CCCCCCCccccCCCCCcccCC
Q 014069 365 AAGDLCAICQEKMH--APILLQ--CKHLFCEDCVSEWLER-ERTCPLCRALVKPADLRSFGD 421 (431)
Q Consensus 365 ~~~d~C~IC~e~~~--~pv~L~--CgHiFc~~Cl~~wl~~-~~tCPlCR~~i~~~~l~~~~D 421 (431)
+++..|+||++.+. ++..++ |||.||..|+..++.. ...||.||+++...++ .|+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~-~~~~ 69 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA-VYKP 69 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS-CCCS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch-hhcc
Confidence 44568999999884 344554 9999999999998854 5689999999986653 3443
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=2e-09 Score=88.62 Aligned_cols=51 Identities=31% Similarity=0.709 Sum_probs=43.2
Q ss_pred cCCcccccccccccCEeec-CCCccchhhHHHHhccC------CCCCC--Cccc-cCCCCC
Q 014069 366 AGDLCAICQEKMHAPILLQ-CKHLFCEDCVSEWLERE------RTCPL--CRAL-VKPADL 416 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~-CgHiFc~~Cl~~wl~~~------~tCPl--CR~~-i~~~~l 416 (431)
.+..|+||++.|.+|+.++ |||.||..||..|+... .+||. |+.. +...++
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC
Confidence 4568999999999999996 99999999999999753 48999 9876 655544
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=8.4e-09 Score=80.08 Aligned_cols=53 Identities=30% Similarity=0.762 Sum_probs=43.6
Q ss_pred hhccCCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccCCCCCcccC
Q 014069 363 VNAAGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVKPADLRSFG 420 (431)
Q Consensus 363 ~~~~~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~~ 420 (431)
...++..|.||++...+++.+||||. ||..|+.. ...||+||+.+.. .++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~-~~~i~~ 64 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE-SFALSG 64 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC-EECCCS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc-eEEeec
Confidence 34456799999999999999999999 99999974 4789999999863 344443
No 60
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.69 E-value=1.4e-08 Score=93.32 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=45.6
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhccC-CCCCCCccccCCCCCc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVKPADLR 417 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~-~tCPlCR~~i~~~~l~ 417 (431)
....|+||++.|.+|+.++|||.||..||..|+... .+||.||.++...++.
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLI 157 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCc
Confidence 456899999999999999999999999999999763 4799999998766554
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=5.3e-09 Score=82.27 Aligned_cols=44 Identities=30% Similarity=0.846 Sum_probs=38.9
Q ss_pred cCCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccCC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
.+..|+||++.+.+++.+||||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34589999999999999999999 99999964 4789999999864
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.63 E-value=6.5e-09 Score=93.85 Aligned_cols=51 Identities=20% Similarity=0.588 Sum_probs=44.9
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccC-CCCCCCccccCCCC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE-RTCPLCRALVKPAD 415 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~-~tCPlCR~~i~~~~ 415 (431)
.++..|+||++.+.+|+.++|||.||..|+..|+... .+||.||..+..++
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 3456899999999999999999999999999999764 49999999987654
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=6.9e-09 Score=82.83 Aligned_cols=55 Identities=29% Similarity=0.664 Sum_probs=44.8
Q ss_pred cCCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccCCCCCcccCCCCcc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVKPADLRSFGDGSTS 425 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~~DGsts 425 (431)
++..|.||++...+++.+||||. ||..|+..| ..||+||.++.. .++.|....++
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~-~~~i~~p~~~~ 72 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH-VQHVYLPTHTS 72 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE-EEECBCTTCCC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC-eEEEEeCcchh
Confidence 34689999999999999999999 999999876 499999999874 34555544444
No 64
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.53 E-value=2.4e-08 Score=75.96 Aligned_cols=55 Identities=15% Similarity=0.327 Sum_probs=49.5
Q ss_pred CcccccccccccCEee-cCCCccchhhHHHHhccCCCCCCCccccCCCCCcccCCC
Q 014069 368 DLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERERTCPLCRALVKPADLRSFGDG 422 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~~~~DG 422 (431)
..|+||.+.|.+|+.+ +|||+|+..||.+|+.++.+||+++.++..+++.+.+-+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 5799999999999999 999999999999999888889999999988887665543
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=9.2e-08 Score=75.70 Aligned_cols=48 Identities=21% Similarity=0.508 Sum_probs=40.5
Q ss_pred ccCCcccccccccccCEe-ecCCCccchhhHHHHhccC--CCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLERE--RTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~~~--~tCPlCR~~i~ 412 (431)
+.-+.|+||++.+..... ..|+|.||..|+..|++++ .+||+||+...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 344689999999876553 3899999999999999876 79999998765
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.2e-07 Score=91.70 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=44.3
Q ss_pred CCcccccccccccCEee-cCCCccchhhHHHHhccC--CCCCC--CccccCCCCCc
Q 014069 367 GDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERE--RTCPL--CRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~--~tCPl--CR~~i~~~~l~ 417 (431)
+..|+||++.|.+|+.. .|||.||..||..|+... .+||. ||+.+...+++
T Consensus 181 el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 181 ELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 45899999999999985 999999999999999764 47999 99988766654
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.34 E-value=9.7e-08 Score=96.19 Aligned_cols=43 Identities=33% Similarity=1.019 Sum_probs=39.9
Q ss_pred cCCcccccccccccCEeecCCCc-cchhhHHHHhccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHL-FCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHi-Fc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 45789999999999999999999 999999887 78999999986
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.21 E-value=7.3e-07 Score=67.57 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=39.9
Q ss_pred ccCCcccccccccccCEeecCC--C---ccchhhHHHHhcc--CCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILLQCK--H---LFCEDCVSEWLER--ERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~Cg--H---iFc~~Cl~~wl~~--~~tCPlCR~~i~ 412 (431)
++++.|.||+++..++..+||. | .||..|+.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3467899999987777788965 4 8999999999964 578999998875
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.10 E-value=3.8e-07 Score=74.46 Aligned_cols=50 Identities=22% Similarity=0.689 Sum_probs=39.6
Q ss_pred CCcccccccccccCEee---cCCCccchhhHHHHhcc--------CCCCCC--Cccc--cCCCCC
Q 014069 367 GDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER--------ERTCPL--CRAL--VKPADL 416 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L---~CgHiFc~~Cl~~wl~~--------~~tCPl--CR~~--i~~~~l 416 (431)
...|+||++++..+..+ +|||.||.+|+..++.. ...||. |+.. +.++++
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 45799999999877543 79999999999999863 237999 9998 665443
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.01 E-value=1.2e-06 Score=87.53 Aligned_cols=47 Identities=26% Similarity=0.622 Sum_probs=37.8
Q ss_pred cCCccccccccccc----CE----eecCCCccchhhHHHHhccC-----------CCCCCCccccC
Q 014069 366 AGDLCAICQEKMHA----PI----LLQCKHLFCEDCVSEWLERE-----------RTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~----pv----~L~CgHiFc~~Cl~~wl~~~-----------~tCPlCR~~i~ 412 (431)
...+|+||++.+.+ |. ..+|+|.||..|+.+|+++. .+||.||+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34589999998865 21 24799999999999999752 47999999886
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.61 E-value=3.2e-05 Score=64.15 Aligned_cols=44 Identities=30% Similarity=0.765 Sum_probs=36.0
Q ss_pred cccccccccccC-EeecCCCccchhhHHHHhc-cCCCCCCCccccC
Q 014069 369 LCAICQEKMHAP-ILLQCKHLFCEDCVSEWLE-RERTCPLCRALVK 412 (431)
Q Consensus 369 ~C~IC~e~~~~p-v~L~CgHiFc~~Cl~~wl~-~~~tCPlCR~~i~ 412 (431)
.|.+|--.+..- ...||+|+||.+|...|.+ +.++||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 477787666543 5789999999999999985 5689999999885
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.83 E-value=0.00095 Score=63.70 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=38.7
Q ss_pred CCcccccccccccCEee-cCCCccchhhHHHHhccC--CCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAPILL-QCKHLFCEDCVSEWLERE--RTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L-~CgHiFc~~Cl~~wl~~~--~tCPlCR~~i~~~ 414 (431)
-..|.+|.+......+= .|+|.||..|+..|++.. ..||.|+...+.+
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 35799999998876643 499999999999999764 4899998866533
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.07 E-value=0.041 Score=44.65 Aligned_cols=31 Identities=19% Similarity=0.760 Sum_probs=26.4
Q ss_pred CCcccccccc-cccCEe--ecCCCccchhhHHHH
Q 014069 367 GDLCAICQEK-MHAPIL--LQCKHLFCEDCVSEW 397 (431)
Q Consensus 367 ~d~C~IC~e~-~~~pv~--L~CgHiFc~~Cl~~w 397 (431)
+..|.||.+. ..+++. +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4579999986 567777 899999999999983
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.20 E-value=0.062 Score=60.28 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCcccccccccccCEeecCC-CccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAPILLQCK-HLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~Cg-HiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
...|+|-.+.|.+|+.+|.| +.|=..+|.+|+.+..+||+-|.++...++.
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~li 942 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVT 942 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccc
Confidence 45899999999999999998 5799999999999999999999999866654
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.89 E-value=0.077 Score=43.38 Aligned_cols=45 Identities=24% Similarity=0.731 Sum_probs=36.9
Q ss_pred CcccccccccccCEeecCC-CccchhhHHHHhccCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHAPILLQCK-HLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~Cg-HiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..|-.|+-..+ -...|. |..|..|+...+.....||+|..++..+
T Consensus 29 ~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 47999997655 344565 9999999999999999999999988643
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=82.50 E-value=0.78 Score=34.87 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=32.5
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhccC----CCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERE----RTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~----~tCPlCR~~i~ 412 (431)
..+..|.+|.+.-.--.--.|...||..|+...+... =.||.|++...
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 4456899998642211112678899999998877653 27999976543
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.08 E-value=2 Score=34.11 Aligned_cols=35 Identities=31% Similarity=0.754 Sum_probs=29.1
Q ss_pred cCCcccccccccccCEeecC----CCccchhhHHHHhcc
Q 014069 366 AGDLCAICQEKMHAPILLQC----KHLFCEDCVSEWLER 400 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~C----gHiFc~~Cl~~wl~~ 400 (431)
+...|.+|++.+++.-...| .|.||-.|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 34589999999998866666 599999999998864
No 78
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=72.02 E-value=2.7 Score=33.66 Aligned_cols=32 Identities=22% Similarity=0.706 Sum_probs=23.5
Q ss_pred ccCCcccccccccccCEeec---CCCccchhhHHHH
Q 014069 365 AAGDLCAICQEKMHAPILLQ---CKHLFCEDCVSEW 397 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~---CgHiFc~~Cl~~w 397 (431)
..++.|.||...- ...++| |+-+||..|+.+.
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 3678999998432 333344 6799999999996
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=63.80 E-value=2 Score=31.82 Aligned_cols=48 Identities=19% Similarity=0.467 Sum_probs=30.2
Q ss_pred hccCCcccccccccccCEeecCCCccchhhHHHHhcc----CCCCCCCcccc
Q 014069 364 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRALV 411 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i 411 (431)
+..++.|.+|.+.-.--.--.|...||..|+..-+.. .=.||.|+...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3456789999863211111257788999998764443 23699996643
No 80
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=61.74 E-value=3.3 Score=37.14 Aligned_cols=47 Identities=32% Similarity=0.610 Sum_probs=31.1
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc----CCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i~ 412 (431)
.++.|.+|...-.--.--.|...||..|+..-+.. .=.||.|+..-.
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 46789999865221111257788999998766553 237999987543
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=61.67 E-value=1.9 Score=39.64 Aligned_cols=48 Identities=27% Similarity=0.543 Sum_probs=31.6
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhcc----CCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i~ 412 (431)
..++.|.+|...-.--..-.|...||..|+..-+.. .=.||.|+..-.
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 456789999854221011257788999998776653 237999987543
No 82
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=57.42 E-value=5.3 Score=40.22 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=35.7
Q ss_pred CCcccccccccccCEe-ecCCCccchhhHHHHhc---c--CCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWLE---R--ERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl~---~--~~tCPlCR~~i~~~~l~ 417 (431)
...|++-...+..|++ ..|.|.-|-+. ..|+. + .-.||.|.+.+..+++.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 4589999999999985 57999966543 23332 2 34799999988665554
No 83
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=54.58 E-value=6.3 Score=39.54 Aligned_cols=50 Identities=26% Similarity=0.616 Sum_probs=35.5
Q ss_pred CCcccccccccccCEe-ecCCCccchhhHHHHh---cc--CCCCCCCccccCCCCCc
Q 014069 367 GDLCAICQEKMHAPIL-LQCKHLFCEDCVSEWL---ER--ERTCPLCRALVKPADLR 417 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~-L~CgHiFc~~Cl~~wl---~~--~~tCPlCR~~i~~~~l~ 417 (431)
...|++-...++.|++ ..|.|.-|-+. ..|+ .+ .-.||.|.+.+..+++.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 3579999999999975 58999955442 2333 22 34799999988766554
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=53.57 E-value=4.7 Score=29.80 Aligned_cols=42 Identities=24% Similarity=0.727 Sum_probs=29.3
Q ss_pred ccCCcccccccccccCEee---cCCCccchhhHHHHhcc----CCCCCCCcc
Q 014069 365 AAGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER----ERTCPLCRA 409 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L---~CgHiFc~~Cl~~wl~~----~~tCPlCR~ 409 (431)
..++.|.+|... . .++ .|...||..|+..-+.. .=.||.|+.
T Consensus 9 ~~~~~C~vC~~~--g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG--G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC--S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC--C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 346789999874 2 233 57788999999875533 237999965
No 85
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=53.43 E-value=8.7 Score=28.56 Aligned_cols=40 Identities=28% Similarity=0.684 Sum_probs=30.4
Q ss_pred CcccccccccccCE---eecCCCccchhhHHHHhccCCCCCCC
Q 014069 368 DLCAICQEKMHAPI---LLQCKHLFCEDCVSEWLERERTCPLC 407 (431)
Q Consensus 368 d~C~IC~e~~~~pv---~L~CgHiFc~~Cl~~wl~~~~tCPlC 407 (431)
..|-.|+..+.+.. -..|++.||.+|=.=.-+.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999986654 34789999999965444556689988
No 86
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.36 E-value=6 Score=39.68 Aligned_cols=46 Identities=17% Similarity=0.476 Sum_probs=0.0
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHHHhc-------cCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLE-------RERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~-------~~~tCPlCR~~i~ 412 (431)
...|..|...+.--. .-.||++||..|-..... ..+.|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 458999999885332 347999999999876541 2457888866553
No 87
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=49.40 E-value=4.7 Score=36.53 Aligned_cols=45 Identities=31% Similarity=0.651 Sum_probs=29.9
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhcc----CCCCCCCcccc
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRALV 411 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i 411 (431)
++.|.+|.+.-.--..-.|...||..|+..=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5789999965321122356788999999765543 23799997653
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=49.26 E-value=2.5 Score=31.80 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=29.6
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhcc----CCCCCCCcccc
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRALV 411 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i 411 (431)
..++.|.+|...-.--.--.|...||..|+..-+.. .=.||.|...-
T Consensus 6 ~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 356789999974211111257778999998754433 22699996543
No 89
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.95 E-value=16 Score=27.95 Aligned_cols=42 Identities=38% Similarity=0.764 Sum_probs=29.9
Q ss_pred cCCccccccccccc-CEeecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 366 AGDLCAICQEKMHA-PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 366 ~~d~C~IC~e~~~~-pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
..+.|+.|...+.. ..+..-+..||.+| ..|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 45689999988743 23345577788877 56888988887554
No 90
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.76 E-value=9.3 Score=30.43 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=31.0
Q ss_pred ccCCcccccccccccCE----eecCCCccchhhHHHHhc------cCCCCCCCcccc
Q 014069 365 AAGDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLE------RERTCPLCRALV 411 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~------~~~tCPlCR~~i 411 (431)
.+...|.+|...|.--. -..||++||..|...... ..+.|-.|-..+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred ccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 34468999999886332 347999999999765431 133566665444
No 91
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=45.29 E-value=15 Score=31.07 Aligned_cols=29 Identities=24% Similarity=0.811 Sum_probs=22.2
Q ss_pred CcccccccccccCE----eecCCCccchhhHHH
Q 014069 368 DLCAICQEKMHAPI----LLQCKHLFCEDCVSE 396 (431)
Q Consensus 368 d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~ 396 (431)
..|.+|...|.--. --.||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 47999999886432 347999999999654
No 92
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=42.89 E-value=5.4 Score=30.41 Aligned_cols=47 Identities=19% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCcccccccccccCEee---cCCCccchhhHHHHhcc----CCCCCCCccccCC
Q 014069 367 GDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER----ERTCPLCRALVKP 413 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L---~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i~~ 413 (431)
+..|.+|.........+ .|..-||..|+..-... .-.||.|+..+..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 44799998765433333 56777999998754432 3479999876653
No 93
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.81 E-value=21 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.499 Sum_probs=24.3
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
..|+-|...+....+..-+..||.+| .+|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 46777777766555555666677666 45777777665
No 94
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=42.36 E-value=6.3 Score=31.40 Aligned_cols=52 Identities=17% Similarity=0.425 Sum_probs=33.3
Q ss_pred ccCCccccccccc--ccCEee---cCCCccchhhHHHHhcc--CCCCCCCccccCCCCC
Q 014069 365 AAGDLCAICQEKM--HAPILL---QCKHLFCEDCVSEWLER--ERTCPLCRALVKPADL 416 (431)
Q Consensus 365 ~~~d~C~IC~e~~--~~pv~L---~CgHiFc~~Cl~~wl~~--~~tCPlCR~~i~~~~l 416 (431)
+.++.|.+|...- ....++ .|.-.||..|+..-... .=.||.|......+.+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~ 81 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPAL 81 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC-
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhh
Confidence 4567999999754 222333 56778999999754322 3369999776554444
No 95
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=42.30 E-value=15 Score=31.50 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=21.5
Q ss_pred cCCcccccccccc--cC---EeecCCCccchhhHH
Q 014069 366 AGDLCAICQEKMH--AP---ILLQCKHLFCEDCVS 395 (431)
Q Consensus 366 ~~d~C~IC~e~~~--~p---v~L~CgHiFc~~Cl~ 395 (431)
.+..|.+|...+. .. .-..|+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4568999999883 11 345788888888854
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=41.72 E-value=9.2 Score=30.69 Aligned_cols=44 Identities=34% Similarity=0.752 Sum_probs=30.6
Q ss_pred hccCCcccccccccccCEee---cCCCccchhhHHHHhcc----CCCCCCCccc
Q 014069 364 NAAGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER----ERTCPLCRAL 410 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~pv~L---~CgHiFc~~Cl~~wl~~----~~tCPlCR~~ 410 (431)
...++.|.+|...- .++ .|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~g---~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPG---DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSS---CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCC---CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 44567999999752 233 56677999999776644 2379999754
No 97
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=40.74 E-value=11 Score=26.34 Aligned_cols=41 Identities=29% Similarity=0.697 Sum_probs=26.5
Q ss_pred cccccccccccCEee---cCCCccchhhHHHHhcc----CCCCCCCcc
Q 014069 369 LCAICQEKMHAPILL---QCKHLFCEDCVSEWLER----ERTCPLCRA 409 (431)
Q Consensus 369 ~C~IC~e~~~~pv~L---~CgHiFc~~Cl~~wl~~----~~tCPlCR~ 409 (431)
.|.+|...-.....+ .|...||..|+..=+.. .=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888654333333 57788999999754433 226888854
No 98
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.89 E-value=18 Score=29.85 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=37.3
Q ss_pred ccccccccccc---CEeecCCCccchhhHHHHhccCCCCCCCccccCCCCCc
Q 014069 369 LCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADLR 417 (431)
Q Consensus 369 ~C~IC~e~~~~---pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l~ 417 (431)
.|..|...+.+ .-...=+..||..|..+.+..+..|..|..+|...++.
T Consensus 34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~ 85 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVM 85 (122)
T ss_dssp CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESS
T ss_pred CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheE
Confidence 78899888852 33455678899999988776656899999999865543
No 99
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.18 E-value=13 Score=28.27 Aligned_cols=29 Identities=31% Similarity=0.695 Sum_probs=22.1
Q ss_pred CcccccccccccCE----eecCCCccchhhHHH
Q 014069 368 DLCAICQEKMHAPI----LLQCKHLFCEDCVSE 396 (431)
Q Consensus 368 d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~ 396 (431)
+.|.+|...|.--. --.||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 58999999886432 247999999999643
No 100
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.67 E-value=3.1 Score=30.17 Aligned_cols=45 Identities=22% Similarity=0.631 Sum_probs=26.9
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHhcc----CCCCCCCcc
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRA 409 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----~~tCPlCR~ 409 (431)
..++.|.+|...-.--.--.|...||..|+..-+.. .=.||.|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346789999975211111257778999998754433 124777743
No 101
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.44 E-value=22 Score=32.88 Aligned_cols=45 Identities=22% Similarity=0.629 Sum_probs=30.4
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHHHhc--------cCCCCCCCcccc
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLE--------RERTCPLCRALV 411 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~--------~~~tCPlCR~~i 411 (431)
++.|.+|...|.--. .-.||++||..|-..... ..+.|-.|-..+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l 220 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQL 220 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHh
Confidence 468999999886332 347999999999765421 134666665544
No 102
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.39 E-value=29 Score=30.44 Aligned_cols=29 Identities=24% Similarity=0.639 Sum_probs=21.8
Q ss_pred cCCccccccccccc-----CEeecCCCccchhhH
Q 014069 366 AGDLCAICQEKMHA-----PILLQCKHLFCEDCV 394 (431)
Q Consensus 366 ~~d~C~IC~e~~~~-----pv~L~CgHiFc~~Cl 394 (431)
.+..|.+|...+.- ..-..|+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 45789999998631 234578999999986
No 103
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=37.03 E-value=13 Score=29.11 Aligned_cols=46 Identities=24% Similarity=0.587 Sum_probs=30.3
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHHHh--------ccCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWL--------ERERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl--------~~~~tCPlCR~~i~ 412 (431)
...|.+|...|.--. --.||++||..|..... +..+.|-.|-..+.
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 458999999986432 24799999999976542 11235666654443
No 104
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.64 E-value=33 Score=26.40 Aligned_cols=41 Identities=17% Similarity=0.385 Sum_probs=32.0
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
...|.-|.+.+....+..-+..||.+| ..|-.|+..+....
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred CCCcccCCCEecccEEEECCceECccC--------CEecCCCCCCCCCC
Confidence 458999999887766666778888877 57999998886543
No 105
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.30 E-value=7.2 Score=30.99 Aligned_cols=48 Identities=21% Similarity=0.574 Sum_probs=32.6
Q ss_pred ccCCcccccccccc---cCEee--cCCCccchhhHHHHhcc--------CCCCCCCccccC
Q 014069 365 AAGDLCAICQEKMH---APILL--QCKHLFCEDCVSEWLER--------ERTCPLCRALVK 412 (431)
Q Consensus 365 ~~~d~C~IC~e~~~---~pv~L--~CgHiFc~~Cl~~wl~~--------~~tCPlCR~~i~ 412 (431)
+.+..|.+|...-. +..++ .|...||..|+..-+.. .=.|+.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 45678999997643 23332 57788999999865531 237999976554
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=35.08 E-value=27 Score=30.40 Aligned_cols=46 Identities=22% Similarity=0.564 Sum_probs=31.2
Q ss_pred hccCCcccccccccccCEeecCCCccchhhHHHHhc---------c--CCCCCCCcc
Q 014069 364 NAAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLE---------R--ERTCPLCRA 409 (431)
Q Consensus 364 ~~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~---------~--~~tCPlCR~ 409 (431)
+..++.|.+|.+--.--.--.|-..||..|+..-+. . .=.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 345679999997543211226778899999996553 1 237999964
No 107
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=35.02 E-value=14 Score=33.48 Aligned_cols=45 Identities=20% Similarity=0.528 Sum_probs=30.3
Q ss_pred CCcccccccccccCE----ee---cCCCccchhhHHHH------hc-----cCCCCCCCcccc
Q 014069 367 GDLCAICQEKMHAPI----LL---QCKHLFCEDCVSEW------LE-----RERTCPLCRALV 411 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L---~CgHiFc~~Cl~~w------l~-----~~~tCPlCR~~i 411 (431)
++.|++|...+.+.. .. .|..-||..|+.-- +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 568999998876542 34 46777888887421 11 146899997754
No 108
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.94 E-value=24 Score=25.77 Aligned_cols=39 Identities=18% Similarity=0.516 Sum_probs=26.4
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..|..|.+.+....+..-+..||.+| .+|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC--------FRCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT--------SBCSSSCCBCSSS
T ss_pred CcCccCCCEecceEEEECcccccccC--------CEeCCCCCcCCCC
Confidence 46888887776555555566677666 4677887777654
No 109
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.93 E-value=26 Score=26.52 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...|+-|...+....+..-+..||.+| .+|..|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC--------CEeCCCCCccCCC
Confidence 468999999887666666677788777 5799999888754
No 110
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.72 E-value=37 Score=24.57 Aligned_cols=39 Identities=15% Similarity=0.445 Sum_probs=26.9
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..|+.|.+.+....+..-+..||.+| .+|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKEC--------FVCTACRKQLSGQ 44 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTT--------SBCSSSCCBCTTS
T ss_pred CCCcccCCeeccceEEECccccCCCC--------CccCCCCCcCCcC
Confidence 46888888776655556667777766 4677887777543
No 111
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=34.11 E-value=2.8 Score=30.75 Aligned_cols=46 Identities=22% Similarity=0.614 Sum_probs=28.7
Q ss_pred cCCcccccccccccCEeecCCCccchhhHHHHhcc----CCCCCCCcccc
Q 014069 366 AGDLCAICQEKMHAPILLQCKHLFCEDCVSEWLER----ERTCPLCRALV 411 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i 411 (431)
.++.|.+|...-.--.--.|...||..|+..-+.. .-.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46789999874211111257788999998754433 22688886543
No 112
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=33.84 E-value=12 Score=34.28 Aligned_cols=30 Identities=23% Similarity=0.753 Sum_probs=22.8
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHH
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSE 396 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~ 396 (431)
+..|.+|...|.--. .-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 468999999886322 347999999999654
No 113
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.65 E-value=23 Score=27.15 Aligned_cols=56 Identities=23% Similarity=0.625 Sum_probs=34.8
Q ss_pred Ccccccccccc-cCEee---cCCCccchhhHHHHhc-----cCCCCCCCccccCCCCCcccCCCCc
Q 014069 368 DLCAICQEKMH-APILL---QCKHLFCEDCVSEWLE-----RERTCPLCRALVKPADLRSFGDGST 424 (431)
Q Consensus 368 d~C~IC~e~~~-~pv~L---~CgHiFc~~Cl~~wl~-----~~~tCPlCR~~i~~~~l~~~~DGst 424 (431)
..| +|..... ....+ .|..-||..|+.---. ..-.||.|+..-.+..++.++++..
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~K~~~~~~~ 77 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKNWHSGPS 77 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCSCBCCCCCCSCC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCCCceeeeccccC
Confidence 356 8887663 22233 4666799999853221 2458999988766665666666543
No 114
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.45 E-value=26 Score=26.43 Aligned_cols=41 Identities=24% Similarity=0.648 Sum_probs=29.4
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
...|+.|.+.+....+..-+..||.+| .+|-.|++++...+
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC--------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------SSCSSSCCCCCSSS
T ss_pred CCcCccccCEeccceEEECCceeCccC--------CccccCCCCCCCCC
Confidence 347999998877655556677777776 56888888876443
No 115
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.39 E-value=3.4 Score=35.05 Aligned_cols=44 Identities=30% Similarity=0.656 Sum_probs=29.4
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHHHhccCCCCCCCccc
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWLERERTCPLCRAL 410 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~ 410 (431)
...|..|...|..-. --.||.+||..|........+.|-.|...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 358999999886432 35799999999976655556678777543
No 116
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.86 E-value=15 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=22.4
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHH
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSE 396 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~ 396 (431)
-..|.+|...|.--. --.||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 357999999885332 247999999999643
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.73 E-value=16 Score=28.36 Aligned_cols=31 Identities=26% Similarity=0.717 Sum_probs=23.3
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHHH
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEW 397 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~w 397 (431)
...|.+|...|.--. --.||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 347999999886432 2479999999997643
No 118
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.36 E-value=33 Score=26.49 Aligned_cols=41 Identities=17% Similarity=0.467 Sum_probs=32.2
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPAD 415 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~ 415 (431)
...|+.|...+....+..-+..||.+| ..|..|+.++....
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE--------FNCAHCKNTMAYIG 65 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT--------CBCSSSCCBCSSSC
T ss_pred CCCCccCCCEecceEEEECCccccccC--------CccCCCCCCCCCCE
Confidence 468999999887777667788888877 57899998887543
No 119
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.93 E-value=37 Score=24.71 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=28.0
Q ss_pred CCcccccccccc--cCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMH--APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~--~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...|.-|...+. +.++..-+..||..| .+|..|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEECccccCccc--------CeECCCCCcCCCC
Confidence 357888888877 345555677777776 4688888877644
No 120
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.63 E-value=30 Score=26.06 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=28.8
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...|+-|...+....+..-+..||.+| .+|..|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAMGKAYHPGC--------FTCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT--------CBCSSSCCBCTTS
T ss_pred CCccccCCCeecceeEEECCccccHHh--------cCcccCCCccCCC
Confidence 457888888877665556677777766 5688898888643
No 121
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.27 E-value=7.3 Score=31.26 Aligned_cols=59 Identities=20% Similarity=0.435 Sum_probs=35.2
Q ss_pred cCCcccccccccccCEee---cCCCccchhhHHHHhcc----CCCCCCCcccc--CCCCCcccCCCCc
Q 014069 366 AGDLCAICQEKMHAPILL---QCKHLFCEDCVSEWLER----ERTCPLCRALV--KPADLRSFGDGST 424 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L---~CgHiFc~~Cl~~wl~~----~~tCPlCR~~i--~~~~l~~~~DGst 424 (431)
.++.|.+|...-....++ .|...||..|+..-+.. .=.||.|+..- +......|.++..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~~~~~~~~Gf~~~~~ 82 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQPPEAFGFEQATQ 82 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHHSCCSSCCSCCCCCC
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccccCCccccChhhcCC
Confidence 456899999765433333 57778999998754433 22699996532 2223334555543
No 122
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.27 E-value=35 Score=24.48 Aligned_cols=40 Identities=10% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...|+.|.+.+....+..-+..||.+| ..|..|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCCcccCCEecceEEEECccccccCc--------CEECCCCCCCCCC
Confidence 357888988877666656677778776 5688888887643
No 123
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.15 E-value=17 Score=28.89 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=30.9
Q ss_pred CCcccccccccccCE----eecCCCccchhhHHHHh-------ccCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPI----LLQCKHLFCEDCVSEWL-------ERERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv----~L~CgHiFc~~Cl~~wl-------~~~~tCPlCR~~i~ 412 (431)
...|.+|...|.--. --.||++||..|..... +..+.|-.|...+.
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~ 65 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILT 65 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHH
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHH
Confidence 347999999886432 24799999999976532 12346777755543
No 124
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.13 E-value=37 Score=25.44 Aligned_cols=38 Identities=18% Similarity=0.656 Sum_probs=27.7
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
..|+.|.+.+....+..-+..||.+| ..|..|+.++..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCSCCBCCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred CcCccCCCCcCceEEEECCceecccc--------CCccCCCCccCC
Confidence 47888888877655556677777766 568888888854
No 125
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.22 E-value=19 Score=27.34 Aligned_cols=32 Identities=28% Similarity=0.612 Sum_probs=24.1
Q ss_pred cCCcccccccccccCEeecC-CCccchhhHHHHh
Q 014069 366 AGDLCAICQEKMHAPILLQC-KHLFCEDCVSEWL 398 (431)
Q Consensus 366 ~~d~C~IC~e~~~~pv~L~C-gHiFc~~Cl~~wl 398 (431)
...-|.||.++- .-.-+.| +-.||..|.++.-
T Consensus 7 e~pWC~ICneDA-tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDA-TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCC-CEEETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCC-eEEecCCCCceehHHHHHHHc
Confidence 345799999983 2345677 7889999988865
No 126
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=29.98 E-value=1.1e+02 Score=24.63 Aligned_cols=47 Identities=26% Similarity=0.728 Sum_probs=32.7
Q ss_pred cCCcccccccccccC----Eee---cCCCccchhhHHHHh-ccCCCCCCCccccC
Q 014069 366 AGDLCAICQEKMHAP----ILL---QCKHLFCEDCVSEWL-ERERTCPLCRALVK 412 (431)
Q Consensus 366 ~~d~C~IC~e~~~~p----v~L---~CgHiFc~~Cl~~wl-~~~~tCPlCR~~i~ 412 (431)
....|.||-++.-.. ... .|+--.|..|..-=. +..+.||.|+...+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 456899999986322 223 456567999986433 34678999988876
No 127
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.97 E-value=32 Score=25.82 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=30.4
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
...|.-|.+.+....+..-+..||.+| .+|-.|+..+..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPEC--------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTT--------TSCSSSCCCHHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCc--------CeeCCCCCCCCC
Confidence 468999999887766667778888877 468889888753
No 128
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.97 E-value=52 Score=23.94 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=28.5
Q ss_pred CCccccccccccc----CEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~~----pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...|+-|.+.+.. .++..-+..||.+| .+|..|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~~ 48 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLVGR 48 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCTTS
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCCCC
Confidence 3578999888774 44555677788777 4688888888643
No 129
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=27.57 E-value=4.6 Score=33.09 Aligned_cols=41 Identities=24% Similarity=0.537 Sum_probs=28.4
Q ss_pred CCcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
+..|+.|+.++... =++.+|..|-.. +.....||-|.+++.
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceec----CCEEECccccch-hhccccCcchhhHHH
Confidence 46899999887531 234457777654 445678999988874
No 130
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=27.39 E-value=40 Score=28.80 Aligned_cols=45 Identities=22% Similarity=0.565 Sum_probs=29.4
Q ss_pred ccCCcccccccccccCEeecCCCccchhhHHHHh------c-----cCCCCCCCcc
Q 014069 365 AAGDLCAICQEKMHAPILLQCKHLFCEDCVSEWL------E-----RERTCPLCRA 409 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl------~-----~~~tCPlCR~ 409 (431)
..++.|.+|.+--+-..--.|-..||.+|+..-+ + ..=.|++|+.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456899999753321122677899999998642 1 1237999955
No 131
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.28 E-value=14 Score=30.58 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=17.8
Q ss_pred cCEeecCCCccchhhHHHHhccCCCCCCCcccc
Q 014069 379 APILLQCKHLFCEDCVSEWLERERTCPLCRALV 411 (431)
Q Consensus 379 ~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i 411 (431)
.+....||+.|+. -+.....||.|+..-
T Consensus 67 p~~C~~CG~~F~~-----~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVFKA-----EINIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBCCC-----CSSCCSSCSSSCCCC
T ss_pred CcChhhCcCeecc-----cCCCCCCCcCCCCCc
Confidence 3444579998831 233456899997753
No 132
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=27.21 E-value=21 Score=29.28 Aligned_cols=13 Identities=38% Similarity=1.232 Sum_probs=11.2
Q ss_pred ccchhhHHHHhcc
Q 014069 388 LFCEDCVSEWLER 400 (431)
Q Consensus 388 iFc~~Cl~~wl~~ 400 (431)
.||..|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999963
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=26.98 E-value=22 Score=29.19 Aligned_cols=13 Identities=38% Similarity=1.262 Sum_probs=11.1
Q ss_pred ccchhhHHHHhcc
Q 014069 388 LFCEDCVSEWLER 400 (431)
Q Consensus 388 iFc~~Cl~~wl~~ 400 (431)
.||..|+..|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999963
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.64 E-value=43 Score=24.75 Aligned_cols=40 Identities=18% Similarity=0.436 Sum_probs=28.2
Q ss_pred CCcccccccccc-cCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMH-APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~-~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...|+.|.+.+. ...+..-+..||.+| ..|..|+.++...
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 457999998876 444455667777766 5688888888644
No 135
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.35 E-value=59 Score=24.28 Aligned_cols=40 Identities=18% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCcccccccccc--cCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 367 GDLCAICQEKMH--APILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 367 ~d~C~IC~e~~~--~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
...|+.|.+.+. +.++..-+..||.+| .+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEECcccccccc--------CchhhCCCccCCC
Confidence 357999998887 445555677788776 5788898888654
No 136
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.95 E-value=12 Score=36.62 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=33.9
Q ss_pred ccCCcccccccccccCEee----cCC--CccchhhHHHHhccCCCCCCCccc
Q 014069 365 AAGDLCAICQEKMHAPILL----QCK--HLFCEDCVSEWLERERTCPLCRAL 410 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv~L----~Cg--HiFc~~Cl~~wl~~~~tCPlCR~~ 410 (431)
.....|++|-....-.++. .=| +..|..|-.+|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3457999999876544332 123 668889999998888899999765
No 137
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.76 E-value=42 Score=27.57 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=27.6
Q ss_pred Cccccccccccc--CEeecCCCccchhhHHHHhccCCCCCCCccccCCCCC
Q 014069 368 DLCAICQEKMHA--PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPADL 416 (431)
Q Consensus 368 d~C~IC~e~~~~--pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~~l 416 (431)
..|..|...+.. .....=+..||..|....+. ..|..|.......+.
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~--~~~~~~~~~~~~~~~ 85 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK--INGGSGGSGGSGGDV 85 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH--HHTCCCCCCSCCSCC
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc--cccCCCCCCCccCCC
Confidence 367777777732 23445567788888877654 335556555444443
No 138
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=25.47 E-value=18 Score=29.48 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=24.8
Q ss_pred ccCCcccccccccccCE---eecCCCccchhhHHHHhc
Q 014069 365 AAGDLCAICQEKMHAPI---LLQCKHLFCEDCVSEWLE 399 (431)
Q Consensus 365 ~~~d~C~IC~e~~~~pv---~L~CgHiFc~~Cl~~wl~ 399 (431)
..++.|.+|.+.-.... --.|...||..|+.....
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 35678999987644321 236889999999987664
No 139
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.41 E-value=56 Score=24.73 Aligned_cols=42 Identities=24% Similarity=0.591 Sum_probs=26.6
Q ss_pred CCcccccccccccCEeec-----CC-CccchhhHHHHhcc----CCCCCCCccccC
Q 014069 367 GDLCAICQEKMHAPILLQ-----CK-HLFCEDCVSEWLER----ERTCPLCRALVK 412 (431)
Q Consensus 367 ~d~C~IC~e~~~~pv~L~-----Cg-HiFc~~Cl~~wl~~----~~tCPlCR~~i~ 412 (431)
...| +|..... ...+. |. .-||..|+. +.. +-.||.|+..-+
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 4467 8987543 33444 44 479999986 333 337999976543
No 140
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.26 E-value=48 Score=24.58 Aligned_cols=39 Identities=13% Similarity=0.406 Sum_probs=27.0
Q ss_pred CCccccccccccc----CEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 367 GDLCAICQEKMHA----PILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 367 ~d~C~IC~e~~~~----pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
.+.|+.|...+.. ..+..-+..||.+| ..|..|+.++..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCCC
Confidence 3578888887774 45555667777777 467788777753
No 141
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.85 E-value=48 Score=24.07 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=26.1
Q ss_pred Cccccccccccc--CEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHA--PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~--pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..|+.|.+.+.. .++..-+..||.+| ..|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEEECcCeecccC--------CcccccCCccCCC
Confidence 468888887763 34445566677666 4677887777544
No 142
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.64 E-value=44 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.420 Sum_probs=23.3
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVK 412 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~ 412 (431)
+.|+-|.+.+....+..-+..||.+| .+|..|+.++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcceEEECccccccCc--------CEECCCCCCCC
Confidence 46777777665544444556666665 35777777765
No 143
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=23.46 E-value=48 Score=27.19 Aligned_cols=47 Identities=11% Similarity=0.363 Sum_probs=32.8
Q ss_pred Cccccccccccc---CEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~---pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..|..|...+.+ +-...=+..+|..|..+-+.....|..|..+|...
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 478888877752 33445577889998877655444788888888643
No 144
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.10 E-value=15 Score=27.12 Aligned_cols=33 Identities=24% Similarity=0.637 Sum_probs=21.0
Q ss_pred CcccccccccccCE-----e-ec--CCCccchhhHHHHhcc
Q 014069 368 DLCAICQEKMHAPI-----L-LQ--CKHLFCEDCVSEWLER 400 (431)
Q Consensus 368 d~C~IC~e~~~~pv-----~-L~--CgHiFc~~Cl~~wl~~ 400 (431)
..|+-|...++... . .. |++.||..|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46888877665431 1 12 7777888887777543
No 145
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.00 E-value=11 Score=27.67 Aligned_cols=44 Identities=25% Similarity=0.615 Sum_probs=28.1
Q ss_pred cCCccccccccccc-CEee---cCCCccchhhHHHHhc-----cCCCCCCCcc
Q 014069 366 AGDLCAICQEKMHA-PILL---QCKHLFCEDCVSEWLE-----RERTCPLCRA 409 (431)
Q Consensus 366 ~~d~C~IC~e~~~~-pv~L---~CgHiFc~~Cl~~wl~-----~~~tCPlCR~ 409 (431)
.+..|++|.....+ ...+ .|..-||..|+.--.. ..-.||.|+.
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 45679999987642 2233 4666788888754322 2347999965
No 146
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.12 E-value=31 Score=30.54 Aligned_cols=46 Identities=13% Similarity=0.389 Sum_probs=30.2
Q ss_pred Cccccccccccc---CEeecCCCccchhhHHHHhccCCCCCCCccccCC
Q 014069 368 DLCAICQEKMHA---PILLQCKHLFCEDCVSEWLERERTCPLCRALVKP 413 (431)
Q Consensus 368 d~C~IC~e~~~~---pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~ 413 (431)
..|..|...+.. .....=+..||..|..+-+.....|+.|.+.|..
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPA 81 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECT
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCcccc
Confidence 367777777653 3344556778888877655433368888887764
No 147
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.93 E-value=72 Score=23.63 Aligned_cols=39 Identities=15% Similarity=0.399 Sum_probs=28.0
Q ss_pred CcccccccccccCEeecCCCccchhhHHHHhccCCCCCCCccccCCC
Q 014069 368 DLCAICQEKMHAPILLQCKHLFCEDCVSEWLERERTCPLCRALVKPA 414 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~CgHiFc~~Cl~~wl~~~~tCPlCR~~i~~~ 414 (431)
..|+.|.+.+....+..-+..||.+| .+|-.|+.++...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (80)
T 2cuq_A 16 PRCARCSKTLTQGGVTYRDQPWHREC--------LVCTGCQTPLAGQ 54 (80)
T ss_dssp CCCTTTCCCCCSCCEESSSSEECTTT--------CBCSSSCCBCTTC
T ss_pred CcCCCCCCEecCcEEEECCchhhhhh--------CCcccCCCcCCCC
Confidence 57888888776655556677777766 4688888888543
No 148
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.56 E-value=59 Score=26.01 Aligned_cols=40 Identities=25% Similarity=0.643 Sum_probs=25.5
Q ss_pred CcccccccccccCEeec-----CC-CccchhhHHHHhcc----CCCCCCCcccc
Q 014069 368 DLCAICQEKMHAPILLQ-----CK-HLFCEDCVSEWLER----ERTCPLCRALV 411 (431)
Q Consensus 368 d~C~IC~e~~~~pv~L~-----Cg-HiFc~~Cl~~wl~~----~~tCPlCR~~i 411 (431)
..| +|..... ...+. |. .-||..|+. +.. +-.||.|+..-
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 456 9988543 23443 44 469999986 332 33799997654
No 149
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.53 E-value=12 Score=28.95 Aligned_cols=20 Identities=30% Similarity=0.938 Sum_probs=16.0
Q ss_pred cCCCccchhhHHHHhccCCCCC
Q 014069 384 QCKHLFCEDCVSEWLERERTCP 405 (431)
Q Consensus 384 ~CgHiFc~~Cl~~wl~~~~tCP 405 (431)
.|+|.||..|...|-. .+|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5899999999988865 5553
Done!