Query 014071
Match_columns 431
No_of_seqs 270 out of 2611
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 01:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4E-50 8.6E-55 388.7 44.2 365 63-430 12-381 (455)
2 PRK10367 DNA-damage-inducible 100.0 2.7E-46 5.9E-51 361.9 45.1 351 65-418 6-360 (441)
3 PRK10189 MATE family multidrug 100.0 1.2E-45 2.5E-50 360.8 47.0 366 63-431 24-400 (478)
4 PRK00187 multidrug efflux prot 100.0 3.6E-45 7.8E-50 357.3 46.1 365 64-431 6-382 (464)
5 PRK09575 vmrA multidrug efflux 100.0 1.6E-44 3.4E-49 352.3 43.4 364 65-430 9-376 (453)
6 PRK01766 multidrug efflux prot 100.0 5.9E-43 1.3E-47 342.7 46.5 366 63-431 7-380 (456)
7 TIGR00797 matE putative efflux 100.0 1.1E-37 2.4E-42 294.5 41.7 337 76-415 1-341 (342)
8 KOG1347 Uncharacterized membra 100.0 3.8E-34 8.2E-39 274.9 38.5 367 64-431 24-390 (473)
9 TIGR01695 mviN integral membra 100.0 8.1E-30 1.8E-34 253.5 42.2 353 70-430 2-368 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 3.8E-29 8.2E-34 247.8 38.0 351 71-429 2-371 (488)
11 PRK15099 O-antigen translocase 100.0 1.3E-27 2.8E-32 231.6 39.1 340 70-425 3-347 (416)
12 PF03023 MVIN: MviN-like prote 99.9 4.2E-22 9.1E-27 193.5 41.5 326 97-429 4-342 (451)
13 COG0728 MviN Uncharacterized m 99.9 1.1E-20 2.5E-25 180.6 40.6 357 68-428 7-375 (518)
14 PRK00187 multidrug efflux prot 99.9 1.8E-22 4E-27 197.5 25.8 207 62-269 230-443 (464)
15 PRK10189 MATE family multidrug 99.9 1.6E-21 3.6E-26 190.9 28.5 215 63-278 254-470 (478)
16 PRK01766 multidrug efflux prot 99.9 2E-21 4.3E-26 190.6 25.8 206 63-269 234-441 (456)
17 COG0534 NorM Na+-driven multid 99.9 2.8E-21 6E-26 187.7 26.1 212 59-272 232-445 (455)
18 PRK10459 colanic acid exporter 99.9 3.1E-19 6.7E-24 177.0 38.6 335 68-427 5-342 (492)
19 PRK09575 vmrA multidrug efflux 99.9 1.1E-20 2.3E-25 184.8 26.1 205 62-269 228-435 (453)
20 TIGR01695 mviN integral membra 99.9 1E-18 2.2E-23 173.9 32.5 230 64-302 219-453 (502)
21 COG2244 RfbX Membrane protein 99.9 1.4E-18 3E-23 171.8 33.2 346 65-428 3-350 (480)
22 PRK10367 DNA-damage-inducible 99.8 2.9E-17 6.2E-22 159.5 27.1 198 65-269 229-430 (441)
23 PF03023 MVIN: MviN-like prote 99.8 1.5E-16 3.1E-21 154.8 31.5 204 65-270 195-403 (451)
24 PF01554 MatE: MatE; InterPro 99.8 3.5E-19 7.7E-24 149.3 6.2 160 76-236 1-162 (162)
25 COG0728 MviN Uncharacterized m 99.8 1.4E-14 3.1E-19 139.0 35.0 205 65-271 229-438 (518)
26 TIGR02900 spore_V_B stage V sp 99.7 4.4E-16 9.6E-21 154.4 25.6 203 62-269 219-433 (488)
27 PF01943 Polysacc_synt: Polysa 99.7 2.1E-14 4.6E-19 130.9 33.0 271 71-357 2-273 (273)
28 PRK10459 colanic acid exporter 99.7 2.9E-14 6.3E-19 141.5 34.9 200 64-269 203-404 (492)
29 PRK15099 O-antigen translocase 99.7 7.6E-15 1.6E-19 142.4 25.7 201 62-269 209-411 (416)
30 COG2244 RfbX Membrane protein 99.6 5.7E-13 1.2E-17 131.9 26.4 187 63-255 208-396 (480)
31 PF13440 Polysacc_synt_3: Poly 99.6 2.3E-11 4.9E-16 109.5 32.1 246 87-355 3-250 (251)
32 PF01554 MatE: MatE; InterPro 99.5 1.9E-14 4.2E-19 120.5 6.3 134 296-431 1-134 (162)
33 TIGR00797 matE putative efflux 99.4 1E-11 2.2E-16 117.3 17.4 131 62-193 210-341 (342)
34 KOG1347 Uncharacterized membra 99.1 6.5E-10 1.4E-14 107.8 10.0 205 64-269 243-451 (473)
35 PF07260 ANKH: Progressive ank 99.0 3.2E-06 7E-11 75.0 28.8 313 65-388 8-343 (345)
36 PF14667 Polysacc_synt_C: Poly 98.6 9E-06 1.9E-10 66.4 18.3 78 190-269 2-79 (146)
37 PF04506 Rft-1: Rft protein; 98.6 1.4E-05 3E-10 79.0 21.6 201 68-269 253-469 (549)
38 PF04506 Rft-1: Rft protein; 98.5 9.7E-05 2.1E-09 73.2 24.4 357 72-429 5-405 (549)
39 KOG2864 Nuclear division RFT1 98.3 0.003 6.6E-08 59.2 27.5 358 66-430 6-386 (530)
40 KOG2864 Nuclear division RFT1 98.2 0.0014 2.9E-08 61.5 23.4 200 68-269 239-448 (530)
41 PF01943 Polysacc_synt: Polysa 97.2 0.002 4.4E-08 58.3 9.8 71 64-135 201-272 (273)
42 COG4267 Predicted membrane pro 96.5 0.72 1.6E-05 42.8 28.3 264 118-403 74-360 (467)
43 PF07260 ANKH: Progressive ank 96.4 0.15 3.3E-06 46.1 14.1 138 284-431 7-151 (345)
44 PF13440 Polysacc_synt_3: Poly 96.3 0.03 6.5E-07 49.9 9.5 66 69-134 184-250 (251)
45 PF04505 Dispanin: Interferon- 76.7 18 0.00039 25.9 7.0 43 345-388 36-78 (82)
46 COG4267 Predicted membrane pro 74.9 77 0.0017 30.0 13.6 117 142-265 320-437 (467)
47 PF03904 DUF334: Domain of unk 41.3 1E+02 0.0022 26.7 6.2 62 140-201 142-212 (230)
48 PF03303 WTF: WTF protein; In 37.2 2.8E+02 0.0062 24.2 17.8 19 1-20 1-19 (247)
49 PF14184 YrvL: Regulatory prot 30.6 2.7E+02 0.0059 22.0 13.3 101 148-250 4-105 (132)
50 PF05313 Pox_P21: Poxvirus P21 24.0 2.1E+02 0.0046 23.9 5.1 26 244-269 135-160 (189)
51 PF01102 Glycophorin_A: Glycop 23.5 93 0.002 24.2 2.9 23 247-269 68-90 (122)
52 PF11947 DUF3464: Protein of u 21.1 4.6E+02 0.01 21.4 9.3 25 66-90 62-86 (153)
53 PRK10921 twin-arginine protein 20.5 6.3E+02 0.014 22.7 11.0 25 278-302 98-122 (258)
54 PF10160 Tmemb_40: Predicted m 20.4 6.3E+02 0.014 22.7 11.6 48 360-409 109-156 (261)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4e-50 Score=388.66 Aligned_cols=365 Identities=28% Similarity=0.389 Sum_probs=347.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcc
Q 014071 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 142 (431)
.++..|+++++++|.+++++.+.+++.+|++++||++++++|+.+++.++..++ +.+..|++.+..++++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 346889999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014071 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (431)
++++..++++.++++++++..++ +++.++++.+++.++|+.+.+.+|+++..++.|+..++..+.+++|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888777 89999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CCcchhHHHHHHHHHHHHHHHHHHHhhCCC--CCCCCCCCHHhHHHHHHHHHHHHHH
Q 014071 222 IAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLAS 297 (431)
Q Consensus 222 ~~~~~~~~~i~l~~~li~~-~~-~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 297 (431)
.+++++++|+++|++|+++ ++ +|+.|+++||.+++++..++..+++.+++. .....+..+.+++.+|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 999999999999999999999999988653 3333344345678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 014071 298 AVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSF 377 (431)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 377 (431)
++++..+...+...+.+.+++| ++.+|+|+++.++.++.++++.|++++..++++|++|+||++++++..+.+++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcC
Q 014071 378 LIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 378 ~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g 430 (431)
++++..+++++++++++.++|++|+|+.+.+..++++.++.+++++.+.+++|
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g 381 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSG 381 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=361.92 Aligned_cols=351 Identities=19% Similarity=0.206 Sum_probs=323.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 65 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
++.|+++++++|.++++++..+.+.+|+.++||+ |++++++++++.++.++. ..+..+++.+..+++||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 5678999999999999999999999999999998 677899999999999988 88889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014071 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (431)
+++..++++.++++.+++..++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+..+..+++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988877 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCC-CC-CCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 014071 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA-CG-PTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 223 ~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
++++.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++ .+ .+.+.++...++.+|+++|+|.|..++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988899999999999999999988877776532 11 111112211134789999999999999
Q ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Q 014071 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIG 380 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 380 (431)
...+...+.+.+.+++++| ++++|+|+++.++.++.+++..|++++.+|.+||++|+||++++|+..+.+++++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 67999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHH
Q 014071 381 LTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALC 418 (431)
Q Consensus 381 ~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~ 418 (431)
.+.+++++++++++.++|++|+|+.+.+..++++.++.
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~ 360 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVIL 360 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.2e-45 Score=360.81 Aligned_cols=366 Identities=19% Similarity=0.226 Sum_probs=335.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcc
Q 014071 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 142 (431)
+-+..|+++++++|.++++++..+.+.+|+.++|++|++++|+++++.++..+. +.+..|++++..++++|++|++|+|
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 345699999999999999999999999999999999999999999999999888 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014071 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG--QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (431)
++++..++++.+++.++++.+++ +++.++++.+++ .|+|+.+.+..|+++..++.|+..+....++++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 99999999999999999988877 788999999984 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHHHHhhC-C--CCCCCCC-CCHHhHHHHHHHH
Q 014071 220 AVIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSG-A--CGPTWSG-FSWKAFHSLWSFV 291 (431)
Q Consensus 220 ~~~~~~~~~~~i~l~~~li~~~----~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~ 291 (431)
+++++++.++|+++++++++.. ++|+.|+++|+.+++++..++..+++.++ + .+.++++ +.+.+++.+|+++
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 262 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVM 262 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHH
Confidence 9999999999999999999854 68999999999999999988877666543 1 1222222 2223568899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 014071 292 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVV 371 (431)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~ 371 (431)
++|+|.+++.........+.+.+++.+| +..+|+|+++.++.++.+++..|++++..+++||++|+||++++|+..+.
T Consensus 263 ~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~ 340 (478)
T PRK10189 263 GIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRH 340 (478)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999998888888877888888887 77999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 014071 372 AVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi 431 (431)
+.++++++++.++++++++++++.++|++|+|+.+.+..++++.++.+++++++.+.+|+
T Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~ 400 (478)
T PRK10189 341 VFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAG 400 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999999887763
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.6e-45 Score=357.28 Aligned_cols=365 Identities=22% Similarity=0.240 Sum_probs=333.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
+++.|++++.++|.+++++++.+.+.+|+.+++|+|++++++++++.++.+++ ..+..|++++..++++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 47889999999999999999999999999999999999999999999999988 77889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 014071 144 MGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIA 223 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 223 (431)
+++.+++++.+.+.++++..++..+.++++.+++.|+|+.+.+..|+++..++.|+..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999998887775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHHHHhhCCC--CCC-CCCCCHHhHHHHHHHHHHHHH
Q 014071 224 AVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGAC--GPT-WSGFSWKAFHSLWSFVRLSLA 296 (431)
Q Consensus 224 ~~~~~~~i~l~~~li~~~----~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~p 296 (431)
+++.++|+++|++|++.+ ++|+.|+++|+.+++.+..+...+++++++. +.+ +.+..+.+++.+|+++|.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999853 4899999999999998888777666665431 111 122223456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 014071 297 SAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSS 376 (431)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 376 (431)
.++++..+...+.+++.+++++| ++++|+++++.++..+.+++..|++++..+.++|++|+||++++++..|.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccCC--cH---HHHHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 014071 377 FLIGLTLSLILIVTRNQYPALFSS--DP---EVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 377 ~~~~~~~~~~~~~~~~~i~~lf~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~gi 431 (431)
.+++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+.+|+
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~ 382 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGA 382 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 999999999999999999999964 44 78999999999999999999999887653
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.6e-44 Score=352.28 Aligned_cols=364 Identities=19% Similarity=0.215 Sum_probs=335.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 65 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
+..|++++.++|.+++++...+.+.+|+.+++++ |++++++++++.++.++. ..+..+++.+..++++|++|++|+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 5678999999999999999999999999999985 999999999999999988 77888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014071 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (431)
+++.+++++.++++++++..++ +++.++++.+++.++++.+.+..|+++..++.|+..+.....+++|+.|+++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999988877 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCHHhHHHHHHHHHHHHHHHHHH
Q 014071 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS-GFSWKAFHSLWSFVRLSLASAVML 301 (431)
Q Consensus 223 ~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~ 301 (431)
++.+.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++.+.++. +..+.+++.+|++++.|.|..++.
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~ 247 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMY 247 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHH
Confidence 9999999999999999988899999999999999999998888777654322221 111235678999999999999999
Q ss_pred HHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH
Q 014071 302 CVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGL 381 (431)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 381 (431)
....+.....+.+.+.+|+ +.++|+|+++.++..+..++..|++++..|.+||++|+||++++++..+.++++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~ 326 (453)
T PRK09575 248 LYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGI 326 (453)
T ss_pred HHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 9888888888888888874 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCC-cHHHHHHHHHHHHHHHHHHHHhhHhhhhcC
Q 014071 382 TLSLILIVTRNQYPALFSS-DPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 382 ~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g 430 (431)
+.+++++++++++.++|++ |+|+.+.+.+++++.++++++++++.+..+
T Consensus 327 ~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~ 376 (453)
T PRK09575 327 AWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASA 376 (453)
T ss_pred HHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995 789999999999999999999999877654
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=5.9e-43 Score=342.71 Aligned_cols=366 Identities=23% Similarity=0.354 Sum_probs=336.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcc
Q 014071 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 142 (431)
.++.+|++++.++|.+++++...+.+.+|+.+++++|++++++++++.++..+. ..+..|++.+..+.++|++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Confidence 357799999999999999999999999999999999999999999999988777 7788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014071 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (431)
++++.+++++.+++..+++++++ +.+.++++.+++.++++.+.+..|+++.+++.++..+...+++++++.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999988777 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCCcchhHHHHHHHHHHHHHHHHHHHhhCCCC---CCCCCCCHHhHHHHHHHHHHH
Q 014071 222 IAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGACG---PTWSGFSWKAFHSLWSFVRLS 294 (431)
Q Consensus 222 ~~~~~~~~~i~l~~~li~~~----~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 294 (431)
.++++.++|+++++++++.. ++|+.|+++++.+++++..++..+++++++.. +.+.++.+.+++.+|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 99999999999999998642 48999999999999999999888887764321 112222334567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 014071 295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVF 374 (431)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~ 374 (431)
+|.+++...+...+.++..+++.+| ++++++|+++.++.++..++..|++.+..+.++|++|+||++++|+..+.+++
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999888888888989887 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 014071 375 SSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi 431 (431)
++.+++++.+++++.+++++.++|++|+|+.+.+..++++..++.++++++.+.+|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 380 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGA 380 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988764
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.1e-37 Score=294.55 Aligned_cols=337 Identities=33% Similarity=0.531 Sum_probs=309.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchHHHHHHHHHHHH
Q 014071 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (431)
Q Consensus 76 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 155 (431)
|.++++++..+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.+++++|++|+|+.++.+++...+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Q 014071 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILS 234 (431)
Q Consensus 156 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~ 234 (431)
+..+++++++ +++.+++..+++.+++..+.+..++++..++.++.++.....+++++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998887 789999999998788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CCcchhHHHHHHHHHHHHHHHHHHHhhC-CCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014071 235 WLLIL-KLG-LGLVGAAVALNASWWFIDITRLLYIFSG-ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMAL 311 (431)
Q Consensus 235 ~~li~-~~~-~Gi~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 311 (431)
+++++ .++ +|+.|+++++.+++++..++..++.+|+ +.+.+|++....+++.+|++++++.|..++++...+....+
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99988 667 8899999999999999999888777653 23333222223456789999999999999999999999999
Q ss_pred HHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014071 312 ILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTR 391 (431)
Q Consensus 312 ~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (431)
+.+++.++ +.++++|+++.++.++..+++.+++++..|.+++++++||.+++++..++++++.++++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcHHHHHHHHHHHHHH
Q 014071 392 NQYPALFSSDPEVIDLVIDLTPLL 415 (431)
Q Consensus 392 ~~i~~lf~~~~~~~~~~~~~l~~~ 415 (431)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988875
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=274.92 Aligned_cols=367 Identities=47% Similarity=0.749 Sum_probs=353.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
..+.|++++++.|..+..+.....+.+++.++||+|+.++++.+++.+..+..++.+..|+..+..++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 014071 144 MGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIA 223 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 223 (431)
.....+++.......+++...++.+.++++..+++++++...+..|.++..+..+.+.....+..+++++++..+..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHH
Q 014071 224 AVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCV 303 (431)
Q Consensus 224 ~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 303 (431)
....++|+++++++++..++|..|++++..+++++...+...+.........|..+..+ ++.++++++.++|..++..+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999998888776566777777777 89999999999999999999
Q ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 014071 304 EIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTL 383 (431)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (431)
+++.+....+..+.+++.+.++++.+++.++....++++.+++.+.+.++++.+|+|+++++|...+.++..++.++...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999997778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 014071 384 SLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 384 ~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi 431 (431)
+..+...++.+..+|++|+|+.+...+..|+++++.+.++.|.+..|+
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gv 390 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGV 390 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhhe
Confidence 999999999999999999999999999999999999999999999874
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=8.1e-30 Score=253.46 Aligned_cols=353 Identities=14% Similarity=0.099 Sum_probs=292.3
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHhhHhHhhhcCCCcchHHH
Q 014071 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLAL-AAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGV 146 (431)
Q Consensus 70 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-a~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 146 (431)
+.|.+.-.++++++..+.+++|..++++ +|++++ ++++.+.++.+.+..... .|++++..+...++.+++ |+.++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5678889999999999999999999997 899999 899999999876623333 467888767666553332 67777
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014071 147 YLQRSWIILITTALM-LMFM-YIFAQQILSLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (431)
.+.++.......+.. ..++ +++.+++..++ +.+++..+.+..|+++..++.++..+....++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766665544444 4454 77888888887 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhH--HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 014071 223 AAVALLLHTILSWLLILKLGLGLVGAA--VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 223 ~~~~~~~~i~l~~~li~~~~~Gi~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
+++.++++++...++. .++|..|++ +++.+++.+..++..++++|++.+.+ .+++ .+++.+|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLK-PRFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CcCC-CCChhHHHHHHHHHHHHHH
Confidence 9999888776544443 458999988 99999999998888777766432111 1121 2346789999999999999
Q ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Q 014071 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNM-VSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLI 379 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (431)
.....+...++..+.+.++ +.++++|+.+.++..+... +..+++++..|.+++++|+||.+++++..++++++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877766 5689999999999988764 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccCC----cHHHHHHHHHHHHHHHHHHHHhhHhhhhcC
Q 014071 380 GLTLSLILIVTRNQYPALFSS----DPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 380 ~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g 430 (431)
+++.+++++++++++.++|.+ |+|..+.+..++++++++.++.+++.++.+
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 368 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLR 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865 567788899999999999999998877654
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.98 E-value=3.8e-29 Score=247.83 Aligned_cols=351 Identities=15% Similarity=0.146 Sum_probs=290.4
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchHHHHHH
Q 014071 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (431)
Q Consensus 71 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 149 (431)
.|.+.|.+++++...+.+.+|+.+++| +|++++|.++.+.++..++......|++++..+.++|..|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999997 7999999999999999887344556999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 014071 150 RSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALL 228 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 228 (431)
++..+....+++++++ +.+.+++...++.+++. ..++++..+..++..+....++++|+.+|.+..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988777 67778777776666543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCCcchhHHHHHHHHHHHHHHHHHHHhhCCC---CCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 014071 229 LHTILSWLLILK-----LGLGLVGAAVALNASWWFIDITRLLYIFSGAC---GPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 229 ~~i~l~~~li~~-----~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
+++.++..++.. .+.|+.|+++++.+++.+..+...++++|+++ +..+.+....+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998776665542 23678888899999999998887766654322 1112222233467899999999999999
Q ss_pred HHHHHHHHHHHHHHHccccc-----hh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 014071 301 LCVEIWYFMALILFAGYLKN-----AK---LSVAGL-SICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVV 371 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~ 371 (431)
+....+....+++++++... .. ...+.| +++.++..+...+..+++++..|.+++++|+||.+++++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988877765321 01 233333 4667788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhc
Q 014071 372 AVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLS 429 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 429 (431)
+++++..+++++++++..+++++.++|.++++ +..+++++++..++.+++.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~ 371 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQ 371 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876543 5677888888888888877654
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=99.97 E-value=1.3e-27 Score=231.56 Aligned_cols=340 Identities=11% Similarity=0.005 Sum_probs=279.7
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchHHHHH
Q 014071 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL 148 (431)
Q Consensus 70 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 148 (431)
+.|.+.....+.+...+.+++-..++.| +|++++|.++...++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677788888999999999998888885 89999999999999999875555888888988899988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 014071 149 QRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 227 (431)
++++.+.+..+++++++ +.+.+++...++.+++. ..++.+..+..+...+.....+.+|+.||++.++...+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 78889999888777652 24456666666677778899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCC-CCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014071 228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC-GPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIW 306 (431)
Q Consensus 228 ~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 306 (431)
++|+.+ +++.... .|+.|+++|+.+++.+..+...++++|++. +.++.+++ .+++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444432 499999999999999988877777765432 11111222 2467889999999999999999999
Q ss_pred HHHHHHHHHc-cccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 014071 307 YFMALILFAG-YLKNAKLSVAGLSICMNILG-WSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLS 384 (431)
Q Consensus 307 ~~~~~~~~~~-~~~~~~~~~a~~~i~~~i~~-~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (431)
....++.+++ .+| ++++|.|+++.|+.. +...+..+++++..|.++++ +|.+|.++..++..++...++++.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988885 666 779999999999977 45899999999999999995 6789999999999999999999999
Q ss_pred HHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHh
Q 014071 385 LILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQ 425 (431)
Q Consensus 385 ~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 425 (431)
+++++++++++++|.+|+ ++.+.+++++++++.++...+
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~ 347 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGA 347 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765 344566666666665554443
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.93 E-value=4.2e-22 Score=193.47 Aligned_cols=326 Identities=17% Similarity=0.155 Sum_probs=280.1
Q ss_pred cCChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHhhHhHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q 014071 97 HISTL-ALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQIL 173 (431)
Q Consensus 97 ~lg~~-~~a~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 173 (431)
++|.. +..+|.++.++..++...+. .++.++..|...+.. ++++++.++..+....+.....+.++++ +++++++.
T Consensus 4 ~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv 82 (451)
T PF03023_consen 4 FFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIV 82 (451)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46655 57799999999998833443 468999999999998 8889999999999888888888888877 88999999
Q ss_pred HHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCC---cchh
Q 014071 174 SLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG---LVGA 248 (431)
Q Consensus 174 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~G---i~g~ 248 (431)
+.+ +.+++..+.+..++++..+..++..+..++.+++++++|...+....+..++..++...++... .| +.+.
T Consensus 83 ~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~l 160 (451)
T PF03023_consen 83 RLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYAL 160 (451)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHH
Confidence 987 5677888999999999999999999999999999999999999999888887766655444444 66 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHH
Q 014071 249 AVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGL 328 (431)
Q Consensus 249 ~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 328 (431)
++|..++.++..++.+...+|...+.+. +++. +.+..|++++...|..+......+...+++.+++.++.| +++++
T Consensus 161 a~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l 236 (451)
T PF03023_consen 161 AWGVLIGAIIQFLIQLPYLRRFGFRFRP-KFDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccc-cCCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHH
Confidence 9999999999999988888875433221 1111 234688999999999999999999999999999998844 89999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC----CcHH
Q 014071 329 SICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFS----SDPE 403 (431)
Q Consensus 329 ~i~~~i~~~~~-~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~~~~ 403 (431)
+.+.++.++.. .+..+++++..|..+++..+||.++.++..+++++....+.+|.++.++.++++++++.. -|+|
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999966 668899999999999999999999999999999999999999999999999999999864 2666
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhc
Q 014071 404 VIDLVIDLTPLLALCIVINNIQPVLS 429 (431)
Q Consensus 404 ~~~~~~~~l~~~~~~~~~~~~~~~~~ 429 (431)
-.+.....+.+++++.++.+++.++.
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~ 342 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLS 342 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78889999999999999999887653
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.92 E-value=1.1e-20 Score=180.59 Aligned_cols=357 Identities=14% Similarity=0.072 Sum_probs=294.6
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHhh-cCChH-HHHHHHHHHHHHHHHHHHHHHH-HHHhHhhHhHhhhcCCCcchH
Q 014071 68 KKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTL-ALAAVSVENSVIAGFSFGAMLG-MGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~-~~a~~~~~~~i~~~~~~~~~~g-l~~~~~~~~s~~~g~~~~~~~ 144 (431)
.+++|.+.-....++++.+.+++-..+++ .+|+. ...++.++.++.+++.-.+..| ++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 45778888888889999999999777777 58885 6779999999999885555554 689999999999887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014071 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLI-GQ--TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (431)
++..+........+.+.++++ .++.+++.+.. +. +++....+....+++.+..++..+.....+++++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 777777765666666666666 77888888544 33 233333688888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHH
Q 014071 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 221 ~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
+..+..++.-+.....+....+....+.+++..++-+...++.+..++|.+...++ ++.. +....|++.+...|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p-~~~~-~~~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKP-RFGF-KDPGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCCC-CchhHHHHHHHHHHHHHH
Confidence 99999888877566555554333477889999999999999999999985422111 1111 125889999999999999
Q ss_pred HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Q 014071 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLI 379 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (431)
....+++..+++.+++....| +++.++.+.++.++.. .+..++++...|..|++..++|.++.++..++++++++++
T Consensus 245 ~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999744 8889999999999977 7799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccCC----cHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 014071 380 GLTLSLILIVTRNQYPALFSS----DPEVIDLVIDLTPLLALCIVINNIQPVL 428 (431)
Q Consensus 380 ~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 428 (431)
++|.++++..++++++++... +++-.....+.+..++++.++..+.-++
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll 375 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLL 375 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999997632 4555778889999999999988877654
No 14
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=1.8e-22 Score=197.47 Aligned_cols=207 Identities=18% Similarity=0.160 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCc
Q 014071 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 62 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 141 (431)
.+++.+|++++.++|.++.++.+.....+|..+++++|++++++++++.++..+. +.+..|++++..++++|++|++|+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 4457799999999999999999999999999999999999999999999999988 889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCc
Q 014071 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ--TQ---EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSK 215 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 215 (431)
|++++..+.++.++...+++.+++ +++.+++.+++.. ++ |+.+.+..|+++.+++.++..++.+..+++||.||
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999988877 7899999999853 43 68889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 216 IMVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 216 ~~~~~~~~~~~~-~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
++.+++.++++. ++++++++++.+.+++|+.|+|+++.+++.+..++..+.+++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 999999999999888999999999999999998777666644
No 15
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.90 E-value=1.6e-21 Score=190.93 Aligned_cols=215 Identities=15% Similarity=0.136 Sum_probs=198.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcc
Q 014071 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 142 (431)
+++.+|++++.+.|..+......+...+.+.+++++|++++|+++++.++.++. ..+..|++++.+++++|++|++|.+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 457899999999999999999999999988899999999999999999999998 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014071 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (431)
++++..+.+..++...++.++++ +++.+++..+|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999999998887 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 014071 222 IAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSG 278 (431)
Q Consensus 222 ~~~~~~-~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~ 278 (431)
+++.+. ++.+++.+++....++|+.|.|++..+++.+..++..+.+++++++++..+
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~~~ 470 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKYPR 470 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCCC
Confidence 999885 788888888877778999999999999999999988888877665554333
No 16
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=2e-21 Score=190.60 Aligned_cols=206 Identities=20% Similarity=0.171 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcc
Q 014071 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 142 (431)
+++.+|++++.++|.++++....+...++..+++++|++++++++++.++.++. ..+..|++.+.++.++|++|++|++
T Consensus 234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~ 312 (456)
T PRK01766 234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTL 312 (456)
T ss_pred CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 356789999999999999999999999999999999999999999999999988 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014071 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (431)
++++..+.++.++..++++.+++ +.+.+++.++|..|+|+.+.+..|+++..+..++..++....+++||.||++.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~ 392 (456)
T PRK01766 313 DARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFF 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHH
Confidence 99999999999999999988777 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 222 IAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 222 ~~~~~~-~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
.++++. ++++++.+++.+..++|+.|+++++.+++++..++..+++++
T Consensus 393 ~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 393 ITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 789999999888778999999999999999999988877766
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=2.8e-21 Score=187.66 Aligned_cols=212 Identities=20% Similarity=0.228 Sum_probs=198.9
Q ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcC
Q 014071 59 FSREFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGA 138 (431)
Q Consensus 59 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~ 138 (431)
..+++++..|++++.++|.++.++.......+.+.+++++|++.+|+++++.++.++. +.+..|+++++++++++++|+
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga 310 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGA 310 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 3355668999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchh
Q 014071 139 GQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIM 217 (431)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 217 (431)
+|+|++++..+.+..++..+++...++ +++.+++.++|..++|+.+.+..++++..+..++.+.+.+..+++||.||++
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~ 390 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAK 390 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 999999999999999999999999887 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCC
Q 014071 218 VLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC 272 (431)
Q Consensus 218 ~~~~~~~~~~-~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~ 272 (431)
.+++.++.+. .+.+++.+++.... +|..|.|++...++.+..+...++++++++
T Consensus 391 ~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 391 IPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999985 66788888887766 999999999999999999999988888543
No 18
>PRK10459 colanic acid exporter; Provisional
Probab=99.89 E-value=3.1e-19 Score=177.00 Aligned_cols=335 Identities=10% Similarity=0.091 Sum_probs=259.2
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchHHH
Q 014071 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGV 146 (431)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~ 146 (431)
++..+-+....++++...+.+++...+++| +|++++|.++.+..+..++......|++++.. |. +|.+ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--HH
Confidence 567788888999999999999999999996 89999999999999999885666778887653 21 1111 23
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Q 014071 147 YLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAV 225 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 225 (431)
.......+....++++.++ +.+.+++..+++ +++. ...+++..+..++..+.......+++.++.+........
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3455556666666666655 555666655554 4443 345777778888888888899999999999999988888
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 014071 226 ALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEI 305 (431)
Q Consensus 226 ~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 305 (431)
..+...++...+.. .++|+.+..++..++..+..+...+..++ ++++++ + .+++..|++++++.|...+.....
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~-~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYRPAL---H-FSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCCccc---e-ecHHHHHHHHhhhHHHHHHHHHHH
Confidence 88777766655544 36899999999999988877654333322 222111 1 134678999999999999999999
Q ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 014071 306 WYFMALILFAGYLKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLS 384 (431)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (431)
+....|+++++.+.+ ++++|.|+.+.++.++.. .+...+++...|..++. ++|.++.++..++.+++...+++|+.
T Consensus 225 ~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 225 LNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887753 789999999999988754 55667888999999885 57889999999999999999999999
Q ss_pred HHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 014071 385 LILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPV 427 (431)
Q Consensus 385 ~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 427 (431)
+++.+++++++.++.+|+ ++.+...++++++..++..+...
T Consensus 302 ~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~ 342 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNP 342 (492)
T ss_pred HHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887654 56678888888888777666544
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=1.1e-20 Score=184.75 Aligned_cols=205 Identities=13% Similarity=0.160 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCC
Q 014071 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (431)
Q Consensus 62 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 140 (431)
.+++..|++++.++|..+......+...+...+++++|+ +++|+++++.++..+. ..+..|++.+.+++++|++|+||
T Consensus 228 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~ 306 (453)
T PRK09575 228 FNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQ 306 (453)
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCC
Confidence 445778999999999999999999999999999998885 5899999999999998 88999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 014071 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ-TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (431)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (431)
+|++++..++++.+++..+++.+++ +.+.+++..+|+. |+|+.+.+..|+++..++.++..+..+..+++||.||++.
T Consensus 307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 386 (453)
T PRK09575 307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK 386 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999999999999887 7899999999985 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 219 ~~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+++.++...++++++.+++... +|+.|+|+++.+++++..++..+++++
T Consensus 387 ~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 387 ALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999988888899888888665 799999999999999998888777765
No 20
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.86 E-value=1e-18 Score=173.92 Aligned_cols=230 Identities=18% Similarity=0.153 Sum_probs=198.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
++..|++++.+.|..+++....+...+|+.+.+++|++++++++.+.++.++....+..+++++..|.+++.+|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 36789999999999999999999999999986689999999999999999876344678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 014071 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ----TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (431)
.++..+++......+++++++. +.+++++..++.+ ++|....+..++++.+++.++..+.....+.+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999999887 7899999998755 5577888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHH
Q 014071 219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASA 298 (431)
Q Consensus 219 ~~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 298 (431)
+++.+..+.++|++++++++.. +|+.|+++|+.+++.+..++..++++|+.... +..+..+++.|...+..
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~as~ 449 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGI-------LPFGVLKVLAKLVIASA 449 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------CchHHHHHHHHHHHHHH
Confidence 9999999999999999999876 89999999999999999988887777631110 11234556666666555
Q ss_pred HHHH
Q 014071 299 VMLC 302 (431)
Q Consensus 299 ~~~~ 302 (431)
++..
T Consensus 450 ~m~~ 453 (502)
T TIGR01695 450 IIGG 453 (502)
T ss_pred HHHH
Confidence 5543
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.86 E-value=1.4e-18 Score=171.84 Aligned_cols=346 Identities=15% Similarity=0.113 Sum_probs=262.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 65 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
...+++.|.+.-...+++...+.+++....++| +|+++.|.++.+.++..++......|+..+..+.++++..++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 345778899999999999999999999999995 8999999999999999988666679999999999999876666555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014071 144 MGVY-LQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (431)
.+.. ...........+++.........+. ++ .....+++..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5554 4444444444443333332222222 12 23345777889999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHH
Q 014071 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLC 302 (431)
Q Consensus 223 ~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 302 (431)
.+.. ..-......+.. .......++...+..........+.++++....+..++. .++..|+.++.++|......
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHH
Confidence 4444 111122122221 345556666677776666666655543221111111111 36789999999999999999
Q ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 014071 303 VEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLT 382 (431)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 382 (431)
...+....|+++++.+-+ +.++|.|+.+.++......+..+++.+..|..++.+.++|.++.++..+.++++...++++
T Consensus 228 ~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 228 LNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 014071 383 LSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVL 428 (431)
Q Consensus 383 ~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 428 (431)
..+++.++++++..++.+++ .+.+...+.++++..++.++....
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~ 350 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLT 350 (480)
T ss_pred HHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887655 233677777777777766665543
No 22
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.80 E-value=2.9e-17 Score=159.54 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=170.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchH
Q 014071 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 65 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 144 (431)
+..|++++.+.|..+++........+-..+++++|++++|+++++.++.++. +.+..|++++.+++++|++|++|+|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 4689999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCc---hhHHH
Q 014071 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSK---IMVLA 220 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~ 220 (431)
++..+.+..++...+.+++++ +.+.+++..+|..|+|+.+.+..++++..+..+.........+.++|.+| ++.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999999887 78999999999999999999999999988764433344455555555555 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 221 ~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+.+.++..+ ..+... ++|+.|+|++..+++.+..++..+++++
T Consensus 388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~ 430 (441)
T PRK10367 388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRR 430 (441)
T ss_pred HHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877542 111222 3799999999999999999888877665
No 23
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.80 E-value=1.5e-16 Score=154.83 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=191.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchH
Q 014071 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 65 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 144 (431)
+..|++++...|..++.....+...+|+.+.+++++.++++++.+.++.++....+..++++...|..++...++|.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 67899999999999999999999999999999999999999999999999875677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014071 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (431)
++..++++...+.+.+|+++. +.+++++++++. -+.|..+.....+++++++.|+..+...+...+.+.||++.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999887 899999998764 356667888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhC
Q 014071 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (431)
Q Consensus 220 ~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~ 270 (431)
++.++++.++|++++.++... +|..|.++|+.++.++..++..+.++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888 9999999999999999999998888774
No 24
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.77 E-value=3.5e-19 Score=149.28 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=155.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchHHHHHHHHHHHH
Q 014071 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (431)
Q Consensus 76 p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 155 (431)
|.++++++..+...+|+.+++++|++++++++++.++.++. ..+..|++++..+.++|++|++|++++++.+++++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999999 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-HHHHHH
Q 014071 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LLHTIL 233 (431)
Q Consensus 156 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~l 233 (431)
..++++++++ +.+.+++..+++.|+|+.+.+..|+++..++.++..+.....+++++.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 88999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHH
Q 014071 234 SWL 236 (431)
Q Consensus 234 ~~~ 236 (431)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 25
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.75 E-value=1.4e-14 Score=138.97 Aligned_cols=205 Identities=16% Similarity=0.087 Sum_probs=188.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchH
Q 014071 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 65 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 144 (431)
...|++.+...|..++....++...+|+.+.+.+.+...+.+..+.++.++..-.+..++.+...|..|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999874578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014071 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (431)
++..+.++.++.++++|.++. ..+++|+.+.+. -+++....+...+..+.++.++..+..++...+++.+|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999988 889999998763 244556677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCC
Q 014071 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA 271 (431)
Q Consensus 220 ~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~ 271 (431)
+++.+++.++|+.+++.+... +|..|.++++.++.++.+.+.++.++|+.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999777776 88889999999999999888888887753
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=4.4e-16 Score=154.44 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CCh------H---HHHHH-HHHHHHHHHHHHHHHHHHHHhHhh
Q 014071 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-IST------L---ALAAV-SVENSVIAGFSFGAMLGMGSALET 130 (431)
Q Consensus 62 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~------~---~~a~~-~~~~~i~~~~~~~~~~gl~~~~~~ 130 (431)
.+++.+|++++.++|.+++++...+...+|+.++++ +++ + .++.+ +.+.++.++. ..+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 345688999999999999999999999999999985 321 1 22222 3455666766 5678899999999
Q ss_pred HhHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 014071 131 LCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKF 209 (431)
Q Consensus 131 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 209 (431)
.+++..|++|+++.++..++...++...++++++. ..++++++.++..+++ +..++++.+++.++..+.....++
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877 7889999988865433 567899999999999999999999
Q ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 210 LQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 210 l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+++.||++.+++.++++.++|++++++++...++|+.|+++++.+++.+..++..++.+|
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998873334899999999999999999888887765
No 27
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.74 E-value=2.1e-14 Score=130.95 Aligned_cols=271 Identities=18% Similarity=0.194 Sum_probs=204.3
Q ss_pred HHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchHHHHHH
Q 014071 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (431)
Q Consensus 71 ~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 149 (431)
+|.+.-...+++...+.+++-..++.| +|++++|.++....+.+++......|++++..+..++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 566777888899999999999999995 89999999999999999885666899999998888886433 344444555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Q 014071 150 RSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLL 229 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 229 (431)
......+..+++........ ..++.+ +... .+........+..........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444433333332221 233333 2211 222222222257788888999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014071 230 HTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFM 309 (431)
Q Consensus 230 ~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 309 (431)
..++...++.. +.++.+..++..++..+..++..++.+|+.. .+.+..+++..|++++.+.|..+......+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766666554 3448899999999999988888888776431 222223367899999999999999999999999
Q ss_pred HHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014071 310 ALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNEL 357 (431)
Q Consensus 310 ~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~ 357 (431)
.+.++++.+.+ ++++|.|+++.++......+..++.++..|..++.+
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999864 889999999999999999999999999999999853
No 28
>PRK10459 colanic acid exporter; Provisional
Probab=99.73 E-value=2.9e-14 Score=141.46 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=172.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcc
Q 014071 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 142 (431)
++..|++++.+.|...+++...+...+|+.++|+ +|++++|.|+.+.++.+.....+...++....|..++. ++|.+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4678999999999999999999999999999995 79999999999999988753455556777788888885 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014071 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 221 (431)
+.++.+++.......+++|+.+. ...+++++.++.+++ +..+...++++++...+..+.......+++.||++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 99999999999999999998887 788999988765543 456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 222 ~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
.+++..+++++..+.+... +|+.|+++++.+++.+...+..++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888877766655 799999999999999988888877755
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.70 E-value=7.6e-15 Score=142.37 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCC
Q 014071 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (431)
Q Consensus 62 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 140 (431)
.+++.+|++++.+.|..++++...+...+|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.+++. +|
T Consensus 209 ~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 209 WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 34577899999999999999999999999999998 899999999999999988442678899999999999995 67
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014071 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 219 (431)
+++.++.+++........+++.++. ++++++++.++.+++ ++.+.+++++++++..+...+......+...++++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 286 KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999998888888777 789999999887653 3346778899888888887777777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 220 ~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
....+...++++++++++++. +|..|+++++.+++.+...+......+
T Consensus 364 ~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999988 899999999999999999877765544
No 30
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.60 E-value=5.7e-13 Score=131.86 Aligned_cols=187 Identities=21% Similarity=0.287 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCc
Q 014071 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 63 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 141 (431)
.++.+|++++.+.|..+..+...+.+.+|+.+++ .+|++++|.|+.+.++.... ..+...++....|..++...++|.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 3578999999999999999999999999999999 48999999999888888888 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014071 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (431)
++.++..++...+....+++..+. ..+++++...+.+++. ..+...++++++..++..+.......+++.||++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999888 7888899887655432 2267788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q 014071 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNAS 255 (431)
Q Consensus 221 ~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~ 255 (431)
+.+.++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999987 8999999998 44
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.57 E-value=2.3e-11 Score=109.53 Aligned_cols=246 Identities=16% Similarity=0.155 Sum_probs=176.5
Q ss_pred HHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 014071 87 LGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM 165 (431)
Q Consensus 87 ~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (431)
.+++-..+++| +|++++|.++....+..+.......|+.+.... ..++|+++.++..+.......+.++...++
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777885 899999999999999998845556777777544 234556666666666655544444333332
Q ss_pred HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 014071 166 YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245 (431)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi 245 (431)
...+..++ .+++ ...++....+..+...+....++.+++.+|.+..........+....+...+... +.+.
T Consensus 78 ---~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 12222233 3332 2344566777888889999999999999999999999999888774444444432 3488
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Q 014071 246 VGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSV 325 (431)
Q Consensus 246 ~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (431)
.+..++..++.++..++..+..+++ .+.. + +.+..| .++.+.|..............+.++++.+. |++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRRK-LRLS--F----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cCCC--c----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH
Confidence 8888888888888776665533321 1111 1 122334 789999999999999999999999999844 38899
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014071 326 AGLSICMNILGWSN-MVSIGMNAAVSVRTSN 355 (431)
Q Consensus 326 a~~~i~~~i~~~~~-~~~~al~~a~~~~v~~ 355 (431)
|.|+++.++..... .+..++++...|.+++
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999888 9999999999999886
No 32
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.51 E-value=1.9e-14 Score=120.45 Aligned_cols=134 Identities=28% Similarity=0.409 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 014071 296 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFS 375 (431)
Q Consensus 296 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~ 375 (431)
|.+++++.+.+...+++.+++++| ++++++++++.++..+...+..|++++..+.+++++|+||++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 014071 376 SFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi 431 (431)
+.+++++.+++++++++++.++|+.|+|+.+.+.+++++..++.++.+++.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGI 134 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887763
No 33
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.41 E-value=1e-11 Score=117.29 Aligned_cols=131 Identities=23% Similarity=0.284 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCc
Q 014071 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 62 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 141 (431)
++++..|++++.++|.++.++...+...+|+.+++++|++++++++++.++.++. ..+..+++++..+.++++++++|.
T Consensus 210 ~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 288 (342)
T TIGR00797 210 PDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDP 288 (342)
T ss_pred CCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3457889999999999999999999999999999999999999999999999988 788899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014071 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWM 193 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 193 (431)
++.++..+++..+....+++.+++ +++.+++.+++.+|+++.+.+..++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 289 KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999887 7899999999999999999888887664
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.06 E-value=6.5e-10 Score=107.75 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=183.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCc
Q 014071 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST--LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~--~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 141 (431)
.+.++++++.+.|..+...+++....+-....|.++. .++++.++...+.... ..+..+++.++...++..+|+++.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence 6789999999999999999999999999999998874 6899999999999988 778889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014071 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (431)
+++|.....+...+...+...+.. +...+.+...|..++|+.+...+..++++++........+..+..+|.|+.....
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 999999999999998888888776 7888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 221 VIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 221 ~~~~~~~-~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
++++... ++.+++...+-+..++|..|.|++...+..+..........+
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~ 451 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR 451 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee
Confidence 9988875 777777777777778999999999999966666666655554
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.99 E-value=3.2e-06 Score=75.03 Aligned_cols=313 Identities=13% Similarity=0.048 Sum_probs=186.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcC--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCc
Q 014071 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI--ST-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 65 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~l--g~-~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 141 (431)
..+.++.++-+|+.++.....+.-.+.+.-+++- .+ +.+|+|+++..+.-++ ..+...+-+....+ +.+++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHH-----hcchh
Confidence 4678899999999999999999988877777753 23 3599999999999888 55666666654333 33333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHHH-HcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 014071 142 DMMGVYLQRSWIILITTALMLMFM-Y-IFAQQILS-LIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 218 (431)
++.+ .+......+.+......++ + .....++. .++-++++.+.+...+.++.+.-.+.++....++++--.+++..
T Consensus 82 srr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 3222 2222223333333332333 3 34444443 67889999999999999999999999999999998886777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-C--CCcchhHHHHHHHHHHHHHHHH-HHHhh-CCCCCCCCCCCHHhHHHHHHHHHH
Q 014071 219 LAVIAAVALLLHTILSWLLILKL-G--LGLVGAAVALNASWWFIDITRL-LYIFS-GACGPTWSGFSWKAFHSLWSFVRL 293 (431)
Q Consensus 219 ~~~~~~~~~~~~i~l~~~li~~~-~--~Gi~g~~~a~~i~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 293 (431)
....++...+..+++...++... + -+..--.++...+..+.+-+.. -++.. .+..+........+...+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 66665555555555554555311 1 1111112233333333222222 22211 222222222222334578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-ccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHH----
Q 014071 294 SLASAVMLCVEIWYFMALILFAGY-LKNA---KLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTA---- 365 (431)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~---- 365 (431)
.+|.+........+--+.+.++++ +++. +++++...+.+.+.-+.+....-+. +..|.. ..+++.++.
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~r-~~~paf---~~~~~~~~~~~~~ 316 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTELR-AVYPAF---DKNNPQNKLRNCG 316 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhHH-hhCchh---hccCccccccccc
Confidence 999999999999998888888888 4432 3456665544444433333222111 222222 122222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Q 014071 366 ----KLSLVVAVFSSFLIGLTLSLILI 388 (431)
Q Consensus 366 ----~~~~~~~~~~~~~~~~~~~~~~~ 388 (431)
+..+++....++++++.++..++
T Consensus 317 ~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 317 NPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33677777777777777776653
No 36
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.60 E-value=9e-06 Score=66.43 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=73.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 190 ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+++++++.++..+.....+.+++.||++..++.+..+.++|+++++++++. +|..|+++|+.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999877 999999999999999999988888877
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.56 E-value=1.4e-05 Score=79.03 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=163.4
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHhhc--C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCc---
Q 014071 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH--I-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL--- 141 (431)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~--l-g~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~--- 141 (431)
+++++.....+.+++.-.+.+--|++++.. + ..++-|.|++++++-+++.=.+..-+-.+.-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678899999999999999999999999997 4 6678999999999999876777788888888888887655432
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 014071 142 ------DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214 (431)
Q Consensus 142 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 214 (431)
++..+.+...+.+...+++++... ...++.++.+++++.-....+...+++.+..+|+.+++.+...++++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 345667777888888888777776 7788888888765544444567789999999999999999999999997
Q ss_pred chhHHHHHH---HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 215 KIMVLAVIA---AVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 215 ~~~~~~~~~---~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
..+.....+ .+..++.+..+++++.+ ++|..|..+|+.+...+..+...++++|
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544443 44456667778888876 7999999999999999999999888877
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.46 E-value=9.7e-05 Score=73.17 Aligned_cols=357 Identities=11% Similarity=-0.010 Sum_probs=193.8
Q ss_pred HhHHHHHHHHHHHhHHHHH-HHHHhhcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhHhHhhhcCCCcchHHHHHH
Q 014071 72 YLAGPAIFMTICQYPLGAI-TQVFSGHISTLALAAVSVENSVIA-GFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (431)
Q Consensus 72 ~~~~p~~~~~~~~~~~~~i-~~~~i~~lg~~~~a~~~~~~~i~~-~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 149 (431)
+.+.-.++.+++..+.+++ ++..+-+++++.+|..++=..+.. -+-+..-.++-.+.++.-.+...+++.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 4455677778888888776 555555799998888755444443 22155667888887665444322223333333333
Q ss_pred HHHHHHHHHHHHHHHH-H-HhHHH----HHHHc-CCCHH---HHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHcCc
Q 014071 150 RSWIILITTALMLMFM-Y-IFAQQ----ILSLI-GQTQE---ISNAAGTFATWMIPQLFAYALNFPM----VKFLQAQSK 215 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~-~~~~~----i~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~----~~~l~~~g~ 215 (431)
....+..+++.+++.+ + +...+ ...+. ...++ ..+.....+.+...+...-.+...+ +..+.-.-|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 3333333333322222 1 10100 11111 11111 1112222333344444444344433 333333334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh-cCCCc------chhHHHHHHHHHHHHHHHHHHHhh-C-CCCCCC----CCCCH-
Q 014071 216 IMVLAVIAAVALLLHTILSWLLILK-LGLGL------VGAAVALNASWWFIDITRLLYIFS-G-ACGPTW----SGFSW- 281 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~i~l~~~li~~-~~~Gi------~g~~~a~~i~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~- 281 (431)
.+.-........+++..+....... .+++. .-+.++..++++...+........ . .....+ .+...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 4444444444444444433332211 11111 123455666666655433322211 1 110111 11111
Q ss_pred --HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 014071 282 --KAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY--LKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNE 356 (431)
Q Consensus 282 --~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~i~~~~~-~~~~al~~a~~~~v~~~ 356 (431)
.....-++.++.......+...-.+...-+.+++.. +.+ .++-|.|.++.|+.+++. ++..-+..+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 001123677888888888888888888888888888 554 678889999999988854 66778899998888888
Q ss_pred hhcCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 014071 357 LGAAHP---------RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPV 427 (431)
Q Consensus 357 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 427 (431)
..+++. +++.+.....++....+++++..+--...+.+.+++.++.-....+...++.++...++.++|.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765533 34555666666666666666666666666666666654333333458889999999999999987
Q ss_pred hc
Q 014071 428 LS 429 (431)
Q Consensus 428 ~~ 429 (431)
..
T Consensus 404 ~E 405 (549)
T PF04506_consen 404 TE 405 (549)
T ss_pred HH
Confidence 64
No 39
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=0.003 Score=59.22 Aligned_cols=358 Identities=11% Similarity=-0.007 Sum_probs=183.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHH-HHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 66 EGKKLWYLAGPAIFMTICQYPLGAI-TQVFSGHISTLALAAVSVENSVIAGF-SFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 66 ~~~~~~~~~~p~~~~~~~~~~~~~i-~~~~i~~lg~~~~a~~~~~~~i~~~~-~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
...+-.+.+.-.+..+++..+.++. +...+.+++++.+|..++-..+.+-. -+..-.++.-+..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 4455566667777777777777665 66666689999999988776666522 1344455666644433332 123334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014071 144 MGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE-ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (431)
..+..+.+..+..+..+.+..+++ .+... .|+- ..+.-..-+.+...+...-.+...+.-..|..-+.+.-.+.
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl--~~~~s---~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWL--GFLSS---SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHH--HHhhc---cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 444444444444444443333211 11111 1111 11111222333334444444444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHh-cC-CCcchhHHHHHHHHHHHHHHHHHHHhh-CC-CCCC-----C----CCCCHH--hHHHH
Q 014071 223 AAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFS-GA-CGPT-----W----SGFSWK--AFHSL 287 (431)
Q Consensus 223 ~~~~~~~~i~l~~~li~~-~~-~Gi~g~~~a~~i~~~~~~~~~~~~~~~-~~-~~~~-----~----~~~~~~--~~~~~ 287 (431)
...+.++..+..+..... .+ .++..-++|.........+...+++.+ ++ .+.. . .+.... ...--
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 666665553333333332 11 344444444444433333322222222 21 0000 0 000000 00012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCChHHH
Q 014071 288 WSFVRLSLASAVMLCVEIWYFMALILFAGYLKN-AKLSVAGLSICMNILGW-SNMVSIGMNAAVSVRTSNELGAAHPRTA 365 (431)
Q Consensus 288 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~i~~~i~~~-~~~~~~al~~a~~~~v~~~~g~~~~~~~ 365 (431)
++..|.-.....+...-.+...-+.++++.... .-.+-|.|.++.|..++ .-++...+........++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 234444444444555555555555555553321 01245688889888776 4477888889999999998888877777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcC
Q 014071 366 KLSLV---VAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 366 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g 430 (431)
|+... ..++....+++...+.-...++.+..++.++.-....+...++++++..++.++|.+..|
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEa 386 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEA 386 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHH
Confidence 76554 344444444444444444445556666654332222356789999999999999988653
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=0.0014 Score=61.45 Aligned_cols=200 Identities=15% Similarity=0.092 Sum_probs=150.1
Q ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcchH
Q 014071 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 68 ~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 144 (431)
++..+......-+.+.-.+.+--|.+++.. +.-.+-|.|.+.++.-+++.-.+...+--......+|....++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 455666666677778888888888888883 34457788888888777765666677777777788887777766666
Q ss_pred HHH---HHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014071 145 GVY---LQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 145 ~~~---~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (431)
++. ....+.....++++++.. ....+.++.+++++.-....+...+++.+..+|+.+++.+..++..+.+..+-.-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 554 455566666666666555 5677778888876554445566789999999999999999999999987655433
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 221 ---VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 221 ---~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
....+.++..++++++++.+ +|..|..+|.++...+..+...+++++
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567778899999998 788999999999998888888777776
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.25 E-value=0.002 Score=58.28 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=65.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhh
Q 014071 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA 135 (431)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~ 135 (431)
++..|++++.+.|..++.+...+...+|+.++++ .|++++|.|+.+.++.... ..+...+.+...|.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999995 7999999999999999998 778888999999998875
No 42
>COG4267 Predicted membrane protein [Function unknown]
Probab=96.49 E-value=0.72 Score=42.78 Aligned_cols=264 Identities=9% Similarity=0.042 Sum_probs=150.4
Q ss_pred HHHHHHHHHhHhhHhHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHH
Q 014071 118 FGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQL 197 (431)
Q Consensus 118 ~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (431)
..+..|+....++.+|...=++|.+++..-..-...+....+..+..+. -....+... .|=...+...
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v-------f~~~~~~si-----~yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV-------FFVNNQYSI-----VYKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh-------hhhcCchhH-----HHHHHHHHHH
Confidence 4566788888888999888888888877666555555444444444221 111122111 1112233444
Q ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 014071 198 FAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS 277 (431)
Q Consensus 198 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 277 (431)
..++..-+...++.+.+|.+...+.-.++.++...+..++-. .++.|..++.-++..+.......++.|.-..+...
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i 218 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRI 218 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccc
Confidence 555556666778999999999999889998888888776654 59999999999999998888887777632222222
Q ss_pred CCCHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHH------HHHHHHHHHHHHHH-----HHHH
Q 014071 278 GFSWK-AFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAG------LSICMNILGWSNMV-----SIGM 345 (431)
Q Consensus 278 ~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~i~~~i~~~~~~~-----~~al 345 (431)
.++.. .++....+ .+......++.+.++.+.=..++|....+. |-+..-...+...| ...+
T Consensus 219 ~FdFL~~~~~y~SL-------llIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 219 GFDFLLYRRKYPSL-------LLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred ceehhhhhhcchHH-------HHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 22221 11111122 222333344445554443222222111111 33333333333333 3334
Q ss_pred HHHHHHHHHHHhhc----C-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCcHH
Q 014071 346 NAAVSVRTSNELGA----A-------HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPE 403 (431)
Q Consensus 346 ~~a~~~~v~~~~g~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~ 403 (431)
.+...+..-+.+.+ | +.+......++.+.-.+-+-...++.+.++++.+...|.-++-
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~ 360 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY 360 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 55555554443322 2 2233344455555566667778888899999999988876543
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.42 E-value=0.15 Score=46.09 Aligned_cols=138 Identities=12% Similarity=0.116 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 014071 284 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYL-KNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHP 362 (431)
Q Consensus 284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~ 362 (431)
...++++.+.-+|.+++.....+.-.+.+--+++- -+..+.+|+|+++..+.-++..+...+.+.....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 45788999999999999999988888887777653 3324669999999999999999998888777666544 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HH----Hhcccc-ccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcCC
Q 014071 363 RTAKLSLVVAVFSSFLIGLTLSLI-LI----VTRNQY-PALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~i-~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~gi 431 (431)
+ |+.....+ .+.++..+++ .. -++..+ -.++.-|+++.+.+...+.++.+.-+++++..+.+|+
T Consensus 82 s--rr~~vl~~---~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGI 151 (345)
T PF07260_consen 82 S--RRKAVLCM---AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGI 151 (345)
T ss_pred h--hHHHHHHH---HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2 22222222 2222222222 11 122222 2355678999999999999999999999999988875
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.27 E-value=0.03 Score=49.93 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=60.0
Q ss_pred HHHHhHHHHHHHHHHHhHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHh
Q 014071 69 KLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQ 134 (431)
Q Consensus 69 ~~~~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~ 134 (431)
+.++.+.|..+..+.......+|.++++. +|++++|.|+.+.++.......+..++++...|..+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999999999999996 8999999999999999987237889999998888876
No 45
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=76.70 E-value=18 Score=25.88 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014071 345 MNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILI 388 (431)
Q Consensus 345 l~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (431)
++...+..+...+.+||++++++..+++.+++.+-.+. +++++
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~-g~~~~ 78 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII-GIVII 78 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH-HHHHH
Confidence 34445566778889999999999999999888554444 44433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=74.92 E-value=77 Score=30.00 Aligned_cols=117 Identities=10% Similarity=0.184 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014071 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (431)
++.....++.+.-.+-+-.+.++. ++.++.+..+++-++-.. +..++-.++.........+-.+.-=.++.+..+
T Consensus 320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l----~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l 395 (467)
T COG4267 320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYL----DLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL 395 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344455566665566666666665 788999999998765433 335555555555544444444555556777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHH
Q 014071 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLL 265 (431)
Q Consensus 221 ~~~~~~~~~~i~l~~~li~~~~~Gi~g~~~a~~i~~~~~~~~~~~ 265 (431)
..+..-.+.|.++++++... +-|..|+ +..++.++..++...
T Consensus 396 ~~t~~fli~N~ilT~i~l~l-gp~~~g~--gff~a~fl~vlv~~~ 437 (467)
T COG4267 396 ELTALFLISNGILTFIFLEL-GPGYYGV--GFFLASFLYVLVAFK 437 (467)
T ss_pred hhhhHHHHHhHHHHHHHHHh-Cccceeh--HHHHHHHHHHHHHHh
Confidence 77777778888888887753 3344443 334444444444433
No 47
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=41.30 E-value=1e+02 Score=26.75 Aligned_cols=62 Identities=3% Similarity=0.022 Sum_probs=33.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH---------HHHHHHHHHHHHHhHHHHHH
Q 014071 140 QLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE---------ISNAAGTFATWMIPQLFAYA 201 (431)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~ 201 (431)
+++...+.+..++...+++-+++++++.+..++..+++.+.- ..+....|+++++.++|...
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 444555555555555555555555556667777777763321 11223455555555555543
No 48
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=37.20 E-value=2.8e+02 Score=24.18 Aligned_cols=19 Identities=42% Similarity=0.492 Sum_probs=14.0
Q ss_pred CCCcCCCccccccCcchhhh
Q 014071 1 MENNAKQPLISPLLEEEDQE 20 (431)
Q Consensus 1 ~~~~~~~~~~~p~~~~~~~~ 20 (431)
|+||+ .++.+|++|+++..
T Consensus 1 MknNy-~~LksslDEe~~lk 19 (247)
T PF03303_consen 1 MKNNY-TSLKSSLDEEDELK 19 (247)
T ss_pred CCCCc-cccCCccchhcccC
Confidence 67776 47889998887733
No 49
>PF14184 YrvL: Regulatory protein YrvL
Probab=30.64 E-value=2.7e+02 Score=22.02 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Q 014071 148 LQRSWIILITTALMLMFMYIFAQQILSLIGQTQE-ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVA 226 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 226 (431)
+...........++.+..++....+.+++|-+=| ......-.+.....+.|+..+...+...+.-.+-++... ....
T Consensus 4 ~~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~ 81 (132)
T PF14184_consen 4 FIIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLA 81 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHH
Confidence 3344444555555555556677778888875432 222233334445667888877777777666664444443 2455
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHH
Q 014071 227 LLLHTILSWLLILKLGLGLVGAAV 250 (431)
Q Consensus 227 ~~~~i~l~~~li~~~~~Gi~g~~~ 250 (431)
..+...+++..++..|.=+.+..+
T Consensus 82 ~~id~~~t~~~i~~aD~~m~sI~i 105 (132)
T PF14184_consen 82 FIIDFLFTWITIYTADELMESISI 105 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhcceee
Confidence 677778888887765543444443
No 50
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=24.03 E-value=2.1e+02 Score=23.86 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 244 GLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 244 Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
++.|...++.++.++.+++...+.++
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~n 160 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFN 160 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheee
Confidence 44566677888888887777776665
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.51 E-value=93 Score=24.23 Aligned_cols=23 Identities=17% Similarity=-0.060 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 014071 247 GAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 247 g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
|..++.+.+-+...++..|+++|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333333344445554
No 52
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.10 E-value=4.6e+02 Score=21.38 Aligned_cols=25 Identities=4% Similarity=-0.067 Sum_probs=16.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHH
Q 014071 66 EGKKLWYLAGPAIFMTICQYPLGAI 90 (431)
Q Consensus 66 ~~~~~~~~~~p~~~~~~~~~~~~~i 90 (431)
..|-.+..++|.+++.....+...+
T Consensus 62 ~rRm~~~~GiP~~lG~~~f~~~y~l 86 (153)
T PF11947_consen 62 LRRMAVFVGIPTALGVAVFVVFYYL 86 (153)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHH
Confidence 3344556778888887766655544
No 53
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=20.47 E-value=6.3e+02 Score=22.68 Aligned_cols=25 Identities=4% Similarity=-0.225 Sum_probs=13.1
Q ss_pred CCCHHhHHHHHHHHHHHHHHHHHHH
Q 014071 278 GFSWKAFHSLWSFVRLSLASAVMLC 302 (431)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~p~~~~~~ 302 (431)
...+..++..+...-.+........
T Consensus 98 gLy~~Err~~~~~~~~s~~LF~~G~ 122 (258)
T PRK10921 98 ALYKHERRLVVPLLVSSSLLFYIGM 122 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666665555555443
No 54
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=20.38 E-value=6.3e+02 Score=22.66 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHHHHH
Q 014071 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVI 409 (431)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~ 409 (431)
...+.+++..-.+..++...++.-++..+.+++ ..++.++.+...-+.
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg 156 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGG 156 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCC
Confidence 345566666666666666666666666666776 566665544444333
Done!