Query 014071
Match_columns 431
No_of_seqs 270 out of 2611
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 04:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 9.7E-42 3.3E-46 334.1 29.5 367 61-430 5-378 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2E-21 6.9E-26 189.7 20.8 205 64-269 234-445 (460)
3 2k1k_A Ephrin type-A receptor 25.0 78 0.0027 18.0 3.0 14 247-260 15-28 (38)
4 2jwa_A Receptor tyrosine-prote 22.6 1.1E+02 0.0037 18.1 3.3 10 261-270 29-38 (44)
5 2ks1_B Epidermal growth factor 20.9 1.4E+02 0.0048 17.6 4.7 10 260-269 28-37 (44)
6 1pw4_A Glycerol-3-phosphate tr 16.8 5.6E+02 0.019 22.9 27.9 32 66-97 26-57 (451)
7 3o7q_A L-fucose-proton symport 15.5 6E+02 0.021 22.6 27.8 42 70-111 28-71 (438)
8 4ev6_A Magnesium transport pro 11.3 4.6E+02 0.016 23.2 6.4 17 255-271 321-337 (339)
9 4aps_A DI-OR tripeptide H+ sym 8.8 1E+03 0.036 21.4 17.8 10 352-361 341-350 (491)
10 3hd7_A Vesicle-associated memb 7.8 4.7E+02 0.016 18.0 3.9 37 354-390 49-85 (91)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=9.7e-42 Score=334.05 Aligned_cols=367 Identities=22% Similarity=0.352 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCC
Q 014071 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (431)
Q Consensus 61 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 140 (431)
...++..|++++.++|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++.+..+.+++++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 34557899999999999999999999999999999999999999999999998877 77889999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014071 141 LDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 220 (431)
+++.++.+++++.+..+.++++++++++.++++.+++.+++..+.+..|+++..++.++..+.....+++++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999887767788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-c---CCCcchhHHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCHHhHHHHHHHHHH
Q 014071 221 VIAAVALLLHTILSWLLILK-L---GLGLVGAAVALNASWWFIDITRLLYIFSGACGPT---WSGFSWKAFHSLWSFVRL 293 (431)
Q Consensus 221 ~~~~~~~~~~i~l~~~li~~-~---~~Gi~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 293 (431)
+.++++.++|+++++++++. + ++|+.|+++|+.+++++..++..++++|++...+ +.++...+++.+|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 4 6999999999999999999998888877542211 223333456788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 014071 294 SLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAV 373 (431)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~al~~a~~~~v~~~~g~~~~~~~~~~~~~~~ 373 (431)
++|..++.....+.+..++.+++.+| ++++|+|+++.++.++..++..+++++..|.+++++|+||.+++++..++++
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999986 7799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHhhHhhhhcC
Q 014071 374 FSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g 430 (431)
+++..++++.+++++++++++.++|++|+++.+.+..++++++++.++++++.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 378 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAG 378 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887654
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.88 E-value=2e-21 Score=189.74 Aligned_cols=205 Identities=15% Similarity=0.114 Sum_probs=192.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHhHhhhcCCCcch
Q 014071 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 64 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~a~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 143 (431)
++..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++.++. ..+..+++++..|.+++.+|++|.++
T Consensus 234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~~ 312 (460)
T 3mkt_A 234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTKG 312 (460)
T ss_dssp TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 35668899999999999999999999999999999999999999999999999 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014071 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 222 (431)
.++..+++..+...++++++++ +++.+++..++..|++..+.+..++++.+++.++.++.....+++++.||++.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 392 (460)
T 3mkt_A 313 AAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHR 392 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 9999999999999999999887 889999999998888888899999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHh----cC-CCcchhHHHHHHHHHHHHHHHHHHHhh
Q 014071 223 AAVAL-LLHTILSWLLILK----LG-LGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 223 ~~~~~-~~~i~l~~~li~~----~~-~Gi~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
++++. ++++++++++.+. .+ +|+.|+++|+.+++.+..++..+.++|
T Consensus 393 ~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 393 TFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 9999999999987 67 999999999999999998877666655
No 3
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.95 E-value=78 Score=18.00 Aligned_cols=14 Identities=7% Similarity=-0.135 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHHH
Q 014071 247 GAAVALNASWWFID 260 (431)
Q Consensus 247 g~~~a~~i~~~~~~ 260 (431)
|..++...+-.+..
T Consensus 15 GiVvG~v~gv~li~ 28 (38)
T 2k1k_A 15 AVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHH
Confidence 34444444333333
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.62 E-value=1.1e+02 Score=18.14 Aligned_cols=10 Identities=10% Similarity=-0.071 Sum_probs=4.6
Q ss_pred HHHHHHHhhC
Q 014071 261 ITRLLYIFSG 270 (431)
Q Consensus 261 ~~~~~~~~~~ 270 (431)
+....+++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3334555553
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=20.85 E-value=1.4e+02 Score=17.61 Aligned_cols=10 Identities=10% Similarity=0.095 Sum_probs=4.0
Q ss_pred HHHHHHHHhh
Q 014071 260 DITRLLYIFS 269 (431)
Q Consensus 260 ~~~~~~~~~~ 269 (431)
.+...++++|
T Consensus 28 ~~~~~~~~RR 37 (44)
T 2ks1_B 28 ALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 3333344444
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=16.78 E-value=5.6e+02 Score=22.89 Aligned_cols=32 Identities=0% Similarity=-0.198 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhc
Q 014071 66 EGKKLWYLAGPAIFMTICQYPLGAITQVFSGH 97 (431)
Q Consensus 66 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~ 97 (431)
.++.+.....-.+...............+..+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ 57 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=15.54 E-value=6e+02 Score=22.61 Aligned_cols=42 Identities=5% Similarity=0.045 Sum_probs=18.5
Q ss_pred HHHhHHHHHHHHHHHhHHHHHHHHHhhc--CChHHHHHHHHHHH
Q 014071 70 LWYLAGPAIFMTICQYPLGAITQVFSGH--ISTLALAAVSVENS 111 (431)
Q Consensus 70 ~~~~~~p~~~~~~~~~~~~~i~~~~i~~--lg~~~~a~~~~~~~ 111 (431)
++....-.++..........+...+..+ +++.+.+.......
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 71 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFY 71 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444444444444444444444443 34545554443333
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=11.32 E-value=4.6e+02 Score=23.17 Aligned_cols=17 Identities=6% Similarity=-0.136 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhCC
Q 014071 255 SWWFIDITRLLYIFSGA 271 (431)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ 271 (431)
..++.+++.+++++||+
T Consensus 321 ~m~~~~~~~~~~fkrk~ 337 (339)
T 4ev6_A 321 LMVVIIMIFVYIFRRSG 337 (339)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33444455555565543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=8.82 E-value=1e+03 Score=21.44 Aligned_cols=10 Identities=0% Similarity=-0.230 Sum_probs=4.2
Q ss_pred HHHHHhhcCC
Q 014071 352 RTSNELGAAH 361 (431)
Q Consensus 352 ~v~~~~g~~~ 361 (431)
.+...+|+++
T Consensus 341 ~l~~r~~~r~ 350 (491)
T 4aps_A 341 WLWTAWKKNQ 350 (491)
T ss_dssp HHHHHTTTC-
T ss_pred HHHHHHhccC
Confidence 3444455443
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=7.77 E-value=4.7e+02 Score=18.00 Aligned_cols=37 Identities=11% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014071 354 SNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVT 390 (431)
Q Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (431)
++.+.+.-.+--++..++-+++.+++++++.+++++.
T Consensus 49 s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ii 85 (91)
T 3hd7_A 49 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIII 85 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!