Query 014071
Match_columns 431
No_of_seqs 270 out of 2611
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 04:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014071.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014071hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 45.8 80 0.0059 26.4 18.6 25 243-267 407-431 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 9.6 3.9E+02 0.028 20.9 18.0 25 243-267 376-400 (417)
3 d1lghb_ f.3.1.1 (B:) Light-har 9.0 1.6E+02 0.012 15.9 3.3 34 360-393 9-42 (43)
4 d1nkzb_ f.3.1.1 (B:) Light-har 6.6 2E+02 0.015 15.0 4.7 34 361-394 7-40 (41)
5 d2yvxa3 f.57.1.1 (A:276-448) M 3.8 6.8E+02 0.049 17.7 6.7 31 135-165 68-98 (173)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 3.8 2E+02 0.014 16.2 1.3 36 353-392 2-37 (53)
7 d1jo5a_ f.3.1.1 (A:) Light-har 3.5 3.2E+02 0.024 15.0 2.1 34 360-393 14-47 (48)
8 d2csba3 a.60.2.4 (A:410-464) T 3.3 2.8E+02 0.02 14.7 1.6 11 360-370 23-33 (55)
9 d1ijdb_ f.3.1.1 (B:) Light-har 3.0 4.1E+02 0.03 13.7 4.8 33 360-392 7-39 (40)
10 d1u61a_ a.149.1.1 (A:) Hypothe 2.9 7.1E+02 0.052 16.4 4.7 30 345-374 94-123 (127)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=45.78 E-value=80 Score=26.39 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=12.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHH
Q 014071 243 LGLVGAAVALNASWWFIDITRLLYI 267 (431)
Q Consensus 243 ~Gi~g~~~a~~i~~~~~~~~~~~~~ 267 (431)
.|..+..+.......+..++.....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666555554444444444444333
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.60 E-value=3.9e+02 Score=20.86 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=9.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHH
Q 014071 243 LGLVGAAVALNASWWFIDITRLLYI 267 (431)
Q Consensus 243 ~Gi~g~~~a~~i~~~~~~~~~~~~~ 267 (431)
.|.....+...+...+..++..+.+
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~l 400 (417)
T d1pv7a_ 376 IGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4554444333333333333333333
No 3
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=9.02 E-value=1.6e+02 Score=15.89 Aligned_cols=34 Identities=3% Similarity=0.006 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014071 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQ 393 (431)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (431)
++-++..+.+..++..-..++++.=++.+..+++
T Consensus 9 ~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 9 EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677777888887777777777777766654
No 4
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=6.56 E-value=2e+02 Score=15.03 Aligned_cols=34 Identities=3% Similarity=-0.030 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014071 361 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQY 394 (431)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (431)
+.++..+....+.+....++++.=++.+...+++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4578888899999999988888877777666553
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.82 E-value=6.8e+02 Score=17.75 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=20.4
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 014071 135 AYGAGQLDMMGVYLQRSWIILITTALMLMFM 165 (431)
Q Consensus 135 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (431)
+.|+-+.++.++.+++=...++..+..+.++
T Consensus 68 a~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 68 ATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp HTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466677777777777777777666554
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.79 E-value=2e+02 Score=16.24 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=19.8
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014071 353 TSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRN 392 (431)
Q Consensus 353 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (431)
+++.+|++..+-++........+ +...++.+.-+-|
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~----G~a~gl~lvy~TD 37 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLW----GAVGAVGLVWATD 37 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHHhhhhhhh----hhhhheeeeeeeh
Confidence 35667777666666666655544 4444444444443
No 7
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.52 E-value=3.2e+02 Score=14.97 Aligned_cols=34 Identities=6% Similarity=0.069 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014071 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQ 393 (431)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (431)
++-++..+.+..++..-..++++.=++.+..+++
T Consensus 14 ~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 14 EQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666777777777777777766666665554
No 8
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.31 E-value=2.8e+02 Score=14.71 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=8.1
Q ss_pred CChHHHHHHHH
Q 014071 360 AHPRTAKLSLV 370 (431)
Q Consensus 360 ~~~~~~~~~~~ 370 (431)
||+++++++.+
T Consensus 23 gnpervkqlar 33 (55)
T d2csba3 23 GNPERVKQLAR 33 (55)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 67788877765
No 9
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.00 E-value=4.1e+02 Score=13.70 Aligned_cols=33 Identities=3% Similarity=0.020 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014071 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRN 392 (431)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (431)
++.+++.+....+.+....++++.=++.+...+
T Consensus 7 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 7 EQAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 345778888888888888888877666655443
No 10
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=2.90 E-value=7.1e+02 Score=16.36 Aligned_cols=30 Identities=7% Similarity=-0.117 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 014071 345 MNAAVSVRTSNELGAAHPRTAKLSLVVAVF 374 (431)
Q Consensus 345 l~~a~~~~v~~~~g~~~~~~~~~~~~~~~~ 374 (431)
++.++-..+|..+=.+++++++....+.+.
T Consensus 94 lad~fEAliGalYLd~~~e~~~~~i~~~~~ 123 (127)
T d1u61a_ 94 HSTAFEALIGYHHLLNNRERLDEIVYKAIA 123 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 668888899998877889999999887653
Done!