Query 014073
Match_columns 431
No_of_seqs 260 out of 2608
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 01:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.8E-49 4E-54 384.1 44.9 365 63-430 12-381 (455)
2 PRK10367 DNA-damage-inducible 100.0 1.5E-45 3.3E-50 356.8 46.0 351 65-418 6-360 (441)
3 PRK10189 MATE family multidrug 100.0 6.9E-45 1.5E-49 355.4 47.6 365 63-430 24-399 (478)
4 PRK00187 multidrug efflux prot 100.0 2.7E-44 5.9E-49 351.2 46.5 364 64-430 6-381 (464)
5 PRK09575 vmrA multidrug efflux 100.0 1E-43 2.3E-48 346.5 44.4 363 65-430 9-376 (453)
6 PRK01766 multidrug efflux prot 100.0 2E-42 4.4E-47 339.0 47.0 366 63-431 7-380 (456)
7 TIGR00797 matE putative efflux 100.0 2.5E-37 5.3E-42 292.3 42.4 337 76-415 1-341 (342)
8 KOG1347 Uncharacterized membra 100.0 9.7E-34 2.1E-38 272.2 38.5 367 64-431 24-390 (473)
9 TIGR01695 mviN integral membra 100.0 1.3E-29 2.7E-34 252.1 42.8 353 70-430 2-368 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 9.5E-29 2.1E-33 245.0 39.2 351 71-429 2-371 (488)
11 PRK15099 O-antigen translocase 100.0 4.5E-27 9.7E-32 227.8 39.7 341 70-426 3-348 (416)
12 PF03023 MVIN: MviN-like prote 99.9 1.4E-22 3.1E-27 196.8 42.2 326 97-429 4-342 (451)
13 COG0728 MviN Uncharacterized m 99.9 7.6E-21 1.7E-25 181.8 40.9 357 68-428 7-375 (518)
14 PRK00187 multidrug efflux prot 99.9 1.6E-22 3.5E-27 197.9 26.0 207 62-269 230-443 (464)
15 PRK10189 MATE family multidrug 99.9 2.4E-21 5.2E-26 189.8 28.4 214 63-277 254-469 (478)
16 PRK01766 multidrug efflux prot 99.9 2.9E-21 6.3E-26 189.5 26.0 205 64-269 235-441 (456)
17 COG0534 NorM Na+-driven multid 99.9 4.1E-21 8.8E-26 186.5 26.3 210 61-272 234-445 (455)
18 PRK10459 colanic acid exporter 99.9 5.6E-19 1.2E-23 175.2 39.0 335 68-427 5-342 (492)
19 PRK09575 vmrA multidrug efflux 99.9 2.2E-20 4.7E-25 182.6 26.6 205 62-269 228-435 (453)
20 TIGR01695 mviN integral membra 99.9 6.6E-19 1.4E-23 175.3 32.8 229 65-302 220-453 (502)
21 COG2244 RfbX Membrane protein 99.9 1.8E-18 3.9E-23 171.1 33.9 346 65-428 3-350 (480)
22 PF03023 MVIN: MviN-like prote 99.8 2.6E-17 5.7E-22 160.0 31.8 204 65-270 195-403 (451)
23 COG0728 MviN Uncharacterized m 99.8 9.6E-16 2.1E-20 147.0 35.1 207 65-273 229-440 (518)
24 PRK10367 DNA-damage-inducible 99.8 6.9E-17 1.5E-21 156.9 27.9 198 65-269 229-430 (441)
25 PF01554 MatE: MatE; InterPro 99.8 4.8E-19 1.1E-23 148.5 5.1 160 76-236 1-162 (162)
26 TIGR02900 spore_V_B stage V sp 99.8 4.5E-16 9.7E-21 154.4 25.8 202 63-269 220-433 (488)
27 PRK10459 colanic acid exporter 99.7 2E-14 4.3E-19 142.7 35.4 200 64-269 203-404 (492)
28 PF01943 Polysacc_synt: Polysa 99.7 4.1E-14 8.8E-19 129.1 33.7 270 71-356 2-272 (273)
29 PRK15099 O-antigen translocase 99.7 1.2E-14 2.5E-19 141.1 26.1 200 63-269 210-411 (416)
30 COG2244 RfbX Membrane protein 99.6 2.2E-13 4.7E-18 134.9 26.4 187 63-255 208-396 (480)
31 PF13440 Polysacc_synt_3: Poly 99.5 8.9E-11 1.9E-15 105.7 33.2 246 87-355 3-250 (251)
32 PF01554 MatE: MatE; InterPro 99.5 4E-14 8.6E-19 118.6 6.7 134 296-431 1-134 (162)
33 TIGR00797 matE putative efflux 99.4 6.5E-12 1.4E-16 118.7 17.7 131 62-193 210-341 (342)
34 KOG1347 Uncharacterized membra 99.0 9.6E-10 2.1E-14 106.6 10.0 205 64-269 243-451 (473)
35 PF07260 ANKH: Progressive ank 99.0 4.3E-06 9.4E-11 74.3 29.6 313 65-388 8-343 (345)
36 PF04506 Rft-1: Rft protein; 98.6 1.2E-05 2.5E-10 79.6 21.5 201 68-269 253-469 (549)
37 PF14667 Polysacc_synt_C: Poly 98.6 1.3E-05 2.9E-10 65.4 18.6 78 190-269 2-79 (146)
38 PF04506 Rft-1: Rft protein; 98.4 0.00025 5.4E-09 70.3 24.3 357 72-429 5-405 (549)
39 KOG2864 Nuclear division RFT1 98.2 0.0018 3.8E-08 60.8 23.7 200 68-269 239-448 (530)
40 KOG2864 Nuclear division RFT1 98.0 0.014 3.1E-07 54.9 27.6 358 66-430 6-386 (530)
41 PF01943 Polysacc_synt: Polysa 97.3 0.002 4.3E-08 58.3 10.0 71 64-135 201-272 (273)
42 PF07260 ANKH: Progressive ank 96.9 0.046 1E-06 49.3 14.4 142 284-431 7-151 (345)
43 PF13440 Polysacc_synt_3: Poly 96.2 0.033 7.1E-07 49.7 9.4 67 69-135 184-251 (251)
44 COG4267 Predicted membrane pro 95.5 2.2 4.7E-05 39.7 29.8 264 118-403 74-360 (467)
45 COG4267 Predicted membrane pro 70.8 98 0.0021 29.4 13.6 93 143-239 321-414 (467)
46 PF04505 Dispanin: Interferon- 63.3 52 0.0011 23.5 6.9 42 345-387 36-77 (82)
47 KOG2468 Dolichol kinase [Lipid 54.6 1E+02 0.0022 29.8 9.0 75 294-377 379-453 (510)
48 PF03904 DUF334: Domain of unk 48.6 70 0.0015 27.7 6.3 62 140-201 142-212 (230)
49 PF03303 WTF: WTF protein; In 30.6 3.7E+02 0.008 23.5 17.9 37 1-38 1-38 (247)
50 PRK10739 putative antibiotic t 28.0 3.2E+02 0.007 23.4 7.3 65 348-416 19-83 (197)
51 PF04505 Dispanin: Interferon- 27.8 2.3E+02 0.005 20.2 6.1 33 130-162 42-74 (82)
52 TIGR00427 membrane protein, Ma 23.0 4.2E+02 0.009 22.7 7.2 65 348-416 22-86 (201)
53 PF10160 Tmemb_40: Predicted m 22.1 5.8E+02 0.013 22.9 11.5 49 361-411 110-158 (261)
54 PRK11111 hypothetical protein; 21.4 5.4E+02 0.012 22.3 7.6 72 348-423 25-96 (214)
55 KOG3249 Uncharacterized conser 20.5 3.8E+02 0.0082 22.0 5.8 14 27-40 69-82 (181)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.8e-49 Score=384.11 Aligned_cols=365 Identities=28% Similarity=0.389 Sum_probs=347.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcc
Q 014073 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (431)
.++..|+++++++|++++++...+++++|++++||+|++++++.++++++..++ +.+..|++.|+.+.++|++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 346889999999999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014073 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (431)
++++..++++.++++++++..++ +++.++++.+++.++|+.+.+..|+++..++.|+..++.++.+.+|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888777 89999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-cC-CcchhHHHHHHHHHHHHHHHHHHHHHhCCC--cCccCCCChHhHHHHHHHHHHHHHH
Q 014073 222 IAAVALLLHTILSWLLILK-LG-LGLVGAAVALNASWWFIDITRLLYIFSGAC--GPTWSGFSWKAFHSLWSFVRLSLAS 297 (431)
Q Consensus 222 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 297 (431)
.++++.++|+++|++|++. ++ +|+.|+++||++++++.+++..+++.+++. .....+..+.+++.+|++++.|.|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 67 999999999999999999999999988763 3333344345678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHH
Q 014073 298 AVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSF 377 (431)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 377 (431)
.+++..+...+...+.+.+.+| ++.+|+|+++.++.++.++++.|++++..+++++++|+||++++|+..+.+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 77999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhcC
Q 014073 378 LIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 378 ~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~g 430 (431)
.+++..+++++++++++.++|++|+++.+.+..++++.++.+++++++.+.+|
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g 381 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSG 381 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876
No 2
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=356.78 Aligned_cols=351 Identities=19% Similarity=0.206 Sum_probs=322.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcch
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (431)
++.|+++++++|.++++++..+.+.+|+.++|++ |++++++++++.++.++. ..+..+++.+..+++||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 5678999999999999999999999999999998 677899999999999988 78889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014073 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (431)
+++..++++.++++++++..++ ..+.++++++++.++|+.+.+.+|+++..++.|+..+..+..+++|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 9999999999999999988877 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCC-Cc-CccCCCChHhHHHHHHHHHHHHHHHHH
Q 014073 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGA-CG-PTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 223 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
++++.++|+++++++++.+++|+.|+++|+.+++++.+++..+++++++ .+ .+.+.++...++.+|+++|++.|..++
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~ 244 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR 244 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence 9999999999999999988899999999999999999988877776532 11 111112211134789999999999999
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHH
Q 014073 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIG 380 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 380 (431)
...+...+.+.+.+++.+| ++++|+|+++.++.++.+++..|++++.+|++||++|+||++|+|+..+.+.+++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~ 322 (441)
T PRK10367 245 SLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVA 322 (441)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHH
Q 014073 381 LTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALC 418 (431)
Q Consensus 381 ~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~ 418 (431)
.+.+++++++++++.++|++|+++.+.+..++++..+.
T Consensus 323 ~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~ 360 (441)
T PRK10367 323 LLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVIL 360 (441)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754
No 3
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=6.9e-45 Score=355.43 Aligned_cols=365 Identities=19% Similarity=0.227 Sum_probs=334.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcc
Q 014073 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (431)
+-+..|++++.++|.++++++..+...+|+.+++++|++++|+++++.++..+. ..+..|++.+..++++|++|++|+|
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~ 102 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRR 102 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 345799999999999999999999999999999999999999999999999888 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014073 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIG--QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (431)
++++..++++.++..++++.+++ +++.++++.++. .|+|+.+.+..|+++..++.|+..+..+.++++|+.||++.+
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~ 182 (478)
T PRK10189 103 RARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIP 182 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHh
Confidence 99999999999999999988877 788999999994 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc----CCcchhHHHHHHHHHHHHHHHHHHHHHhC-C--CcCccCC-CChHhHHHHHHHH
Q 014073 220 AVIAAVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSG-A--CGPTWSG-FSWKAFHSLWSFV 291 (431)
Q Consensus 220 ~~~~~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~~ 291 (431)
++.++++.++|+++++++++.. ++|+.|+++|+.+++++..++..+++.++ + .+.++++ +...+++.+|+++
T Consensus 183 ~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 262 (478)
T PRK10189 183 LLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVM 262 (478)
T ss_pred HHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHH
Confidence 9999999999999999999853 68999999999999999988877766543 2 2222222 1223568899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 014073 292 RLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVV 371 (431)
Q Consensus 292 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~ 371 (431)
+.|+|..++.........+.+.+++.+| ++++|+|+++.++..+.+++..|++++..+++|+++|+||++++|+..+.
T Consensus 263 ~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~ 340 (478)
T PRK10189 263 GIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRH 340 (478)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999888888888888888887 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhcC
Q 014073 372 AVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~g 430 (431)
+.++++++++..+++++++++++.++|++|+++.+.+..++++.++.+++++++.+.+|
T Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g 399 (478)
T PRK10189 341 VFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPA 399 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988766
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.7e-44 Score=351.15 Aligned_cols=364 Identities=22% Similarity=0.240 Sum_probs=333.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcch
Q 014073 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 64 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (431)
+++.|++++.++|.+++++...+..++|+.+++|+|++++++++++.++.++. ..+..|++.+..++++|++|++|+++
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~~ 84 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIEG 84 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhh
Confidence 46899999999999999999999999999999999999999999999999988 77889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 014073 144 MGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIA 223 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 223 (431)
+++.+++++.+..+++++..++..+.++++++++.|+|+.+.+..|+++..++.|+..+....++++|+.|+++.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~ 164 (464)
T PRK00187 85 ATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVIS 164 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999999999999887775577999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc----CCcchhHHHHHHHHHHHHHHHHHHHHHhCCC--cCc-cCCCChHhHHHHHHHHHHHHH
Q 014073 224 AVALLLHTILSWLLILKL----GLGLVGAAVALNASWWFIDITRLLYIFSGAC--GPT-WSGFSWKAFHSLWSFVRLSLA 296 (431)
Q Consensus 224 ~~~~~~~i~~~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~p 296 (431)
+++.++|+++|++|++.. ++|+.|+++|+.+++....+...+++++++. +.+ +++....+++.+|+++|.++|
T Consensus 165 ~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P 244 (464)
T PRK00187 165 LAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLP 244 (464)
T ss_pred HHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhh
Confidence 999999999999999853 4899999999999999888777666665431 111 112223456789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHH
Q 014073 297 SAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSS 376 (431)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 376 (431)
.++++..+...+.+++.+++++| ++++|+++++.++..+...+..|++++..++++|++|+||++++++..+.++.++
T Consensus 245 ~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~ 322 (464)
T PRK00187 245 IGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFG 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcccccccccCC--cH---HHHHHHHhHHHHHHHHHHHHhHhhhhcC
Q 014073 377 FLIGLTLSLILIVTRNQYPALFSS--DP---EVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 377 ~~~~~~~~~~~~~~~~~i~~lf~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~i~~g 430 (431)
++++++.++++.++++++.++|++ |+ ++.+.+..++++.+++.++++++.+.+|
T Consensus 323 ~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~ 381 (464)
T PRK00187 323 AVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMG 381 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999964 44 6889999999999999999999988765
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1e-43 Score=346.53 Aligned_cols=363 Identities=19% Similarity=0.222 Sum_probs=335.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcch
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHI-STLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~l-g~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (431)
+..|++++.++|.+++++...+++++|+.+++++ |++++++++++.++.++. ..+..+++.+..++++|++|+||+|+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 5679999999999999999999999999999985 999999999999999988 77888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014073 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (431)
+++.+++++.++.+++++..++ +.+.++++.+++.+++..+.+..|+++..++.++..+.....+++|+.|+++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999999999988877 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCcc--CCCChHhHHHHHHHHHHHHHHHHH
Q 014073 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTW--SGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 223 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
++.+.++|+++++++++.+++|+.|+++|+.+++++..++..+++++++.+.++ +++ +.+++.+|++++.|.|..++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~~ 246 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFFM 246 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHHH
Confidence 999999999999999998889999999999999999999888887765432222 222 23567899999999999999
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHH
Q 014073 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIG 380 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 380 (431)
.....+...+.+.+.+.+|+ ++++|+|+++.++..+...+..|++++..|.++|++|+||++|+|+..+.++++++..+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~ 325 (453)
T PRK09575 247 YLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAG 325 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888874 45799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccccccccCC-cHHHHHHHHhHHHHHHHHHHHHhHhhhhcC
Q 014073 381 LTLSLILIVTRNQYPALFSS-DPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 381 ~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~g 430 (431)
++.++++..+++++.++|++ |+++.+.+.+++++..+++++++++.+.++
T Consensus 326 ~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~ 376 (453)
T PRK09575 326 IAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASA 376 (453)
T ss_pred HHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995 789999999999999999999999877654
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=2e-42 Score=338.99 Aligned_cols=366 Identities=23% Similarity=0.353 Sum_probs=336.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcc
Q 014073 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (431)
.++.+|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+. ..+..|++.+..+.++|++|++|+|
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Confidence 357899999999999999999999999999999999999999999999988777 6788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014073 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (431)
++++.++++..+++++++++.++ +.+.+++..+++.+++..+.+..|+++.+++.++..+..++++++++.|+++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888777 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh----cCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCc---CccCCCChHhHHHHHHHHHHH
Q 014073 222 IAAVALLLHTILSWLLILK----LGLGLVGAAVALNASWWFIDITRLLYIFSGACG---PTWSGFSWKAFHSLWSFVRLS 294 (431)
Q Consensus 222 ~~~~~~~~~i~~~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 294 (431)
.+.++.++|+++++++++. .++|+.|+++++.+++++..++..+++++++.. ..+.++...+++.+|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 9999999999999999864 248999999999999999999988887764321 112222234567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Q 014073 295 LASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVF 374 (431)
Q Consensus 295 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~ 374 (431)
+|.+++...+...+.++..+++.+| ++++++++++.++..+...+..|++.+..+.++|++|+||++++|+..+.+++
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999887 66899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhcCC
Q 014073 375 SSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~gi 431 (431)
+++.++++.++++..+++++.++|++|+++.+.+..++++..+..++++++.+.+|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 380 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGA 380 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999988764
No 7
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=2.5e-37 Score=292.28 Aligned_cols=337 Identities=33% Similarity=0.531 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 014073 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (431)
Q Consensus 76 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 155 (431)
|.++++++..+...+|+.+++++|++++++++++.++..+. ..+..|++++..+.+++++|++|+|+.++.+++...+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Q 014073 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILS 234 (431)
Q Consensus 156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 234 (431)
..++++.+++ +++.+++..+++.+++..+.+..++++..++.++..+..+..+++++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998887 789999999988788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcC-CcchhHHHHHHHHHHHHHHHHHHHHHhC-CCcCccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014073 235 WLLIL-KLG-LGLVGAAVALNASWWFIDITRLLYIFSG-ACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMAL 311 (431)
Q Consensus 235 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 311 (431)
+++++ .++ +|+.|+++++.+++++..++..++.+++ +.+.++++....+++.+|++++++.|..+++....+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99998 677 8899999999999999999888777653 23333222223456789999999999999999999999999
Q ss_pred HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 014073 312 ILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTR 391 (431)
Q Consensus 312 ~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (431)
+.+.+.++ ++++++|+++.++..+...+..+++++..|.+++++++||.+++++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcHHHHHHHHhHHHHH
Q 014073 392 NQYPALFSSDPEVIDLVIDLTPLL 415 (431)
Q Consensus 392 ~~i~~lf~~~~~~~~~~~~~l~~~ 415 (431)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988875
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=9.7e-34 Score=272.16 Aligned_cols=367 Identities=47% Similarity=0.749 Sum_probs=353.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcch
Q 014073 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 64 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (431)
..+.|++++++.|+.+..+.......+++.++||+|+.++++.+++.+..+..++.+..|+..+..++++|++|+++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 57899999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHH
Q 014073 144 MGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIA 223 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 223 (431)
...+.+++..+....+++...++.+.++++..+++++++...+..|.++..+..+.+........++|++++..+..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 014073 224 AVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCV 303 (431)
Q Consensus 224 ~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 303 (431)
....++|+.+++++++..++|..|++++..+++++.......+.........|..+..+ .+.++++++.++|..++..+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 99999999999999999999999999999999999999999998776556667777666 88999999999999999999
Q ss_pred HHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHH
Q 014073 304 EIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTL 383 (431)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (431)
|.+.+.+..++.+.++.....+++.+++.++....++.+.+++.+.+.++++.+|+|+++++|...+.+....+.++...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999997778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhcCC
Q 014073 384 SLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 384 ~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~gi 431 (431)
+..+..+++.+..+|++|+++.+.+.+..++++++.++++.+.+.+|+
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gv 390 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGV 390 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhhe
Confidence 999999999999999999999999999999999999999999999874
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.3e-29 Score=252.12 Aligned_cols=353 Identities=14% Similarity=0.099 Sum_probs=292.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhCCCCcchHHH
Q 014073 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLAL-AAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGV 146 (431)
Q Consensus 70 il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~-~~~~~a~~l~~~~~~~~~-~gl~~a~~~~vs~~~g~~~~~~~~~ 146 (431)
++|.+.-.++++++..+.+++|..++++ +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788889999999999999999999997 899999 899999999976623333 468888777766654332 67777
Q ss_pred HHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014073 147 YLQRSWIILITTALM-LMFM-YIFAQQILSLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (431)
.+.++.....+.+.. ..++ +++++++..++ +.+++..+.+..|+++..++.++..+..+.++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 777766665544443 4444 67888888887 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhHH--HHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHH
Q 014073 223 AAVALLLHTILSWLLILKLGLGLVGAA--VALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 223 ~~~~~~~~i~~~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
+++..+++++...++. .++|..|++ +++.+++.+..++..++.+|++.+.+ .+++ .+++.+|++++++.|..++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~k~~l~~~~p~~~~ 235 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLK-PRFN-FRDPGLKRFLKLFLPTTLG 235 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CcCC-CCChhHHHHHHHHHHHHHH
Confidence 9999887776544443 358999988 99999999998888777766432211 1222 2356789999999999999
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHH
Q 014073 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNM-VSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLI 379 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (431)
.....+...++..+.+.++ +.++++|+.+.++..++.. +..+++++..|.+++++|+||.+++|+..++++++...+
T Consensus 236 ~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01695 236 SSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLL 313 (502)
T ss_pred HHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988877766 5589999999999988764 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccccccCC----cHHHHHHHHhHHHHHHHHHHHHhHhhhhcC
Q 014073 380 GLTLSLILIVTRNQYPALFSS----DPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 380 ~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~g 430 (431)
+++.++++.++++++.++|.+ |++..+.+..++++++++.++.+++.+.++
T Consensus 314 ~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 368 (502)
T TIGR01695 314 TIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLR 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 567788899999999999999988877653
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.98 E-value=9.5e-29 Score=245.03 Aligned_cols=351 Identities=15% Similarity=0.146 Sum_probs=290.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchHHHHHH
Q 014073 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (431)
Q Consensus 71 l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 149 (431)
+|.+.|.++++++..+.+++|+.+++| +|++++|+++.+.++..++......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999997 7999999999999999987344456999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 014073 150 RSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALL 228 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 228 (431)
+++.+..+.+++.+++ +.+.+++...++.+++. ..++++..+..++..+....++.+|+.+|.+..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988777 67777777766666543 346788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----cCCcchhHHHHHHHHHHHHHHHHHHHHHhCCC---cCccCCCChHhHHHHHHHHHHHHHHHHH
Q 014073 229 LHTILSWLLILK-----LGLGLVGAAVALNASWWFIDITRLLYIFSGAC---GPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 229 ~~i~~~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
+++.++..++.. .++|+.|+++++.+++.+..+...++.++++. +..+.+....+++.+|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 988776666542 23678889999999999999887766554321 1112222233467899999999999999
Q ss_pred HHHHHHHHHHHHHHHcccch-----hh---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHH
Q 014073 301 LCVEIWYFMALILFAGYLKN-----AK---LSVAGL-SICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVV 371 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~-----~~---~~~a~~-~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~ 371 (431)
+....+...+++.+++.... .. ...+.| +++.++..++..+..+++++..|.+++++|+||.+++++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999988877764311 01 223333 4566788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhc
Q 014073 372 AVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLS 429 (431)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 429 (431)
++++...++++.++++..+++++.++|.++++ +..+++++++..++.+++.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~ 371 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQ 371 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876543 5678888888888888877654
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=99.97 E-value=4.5e-27 Score=227.82 Aligned_cols=341 Identities=11% Similarity=-0.007 Sum_probs=281.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchHHHHH
Q 014073 70 LWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYL 148 (431)
Q Consensus 70 il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~ 148 (431)
++|.+.....+.++..+.+++-..+++| +|++++|.++..+++..++......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 5677888888999999999998888885 89999999999999999775555888888888999988 67888999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Q 014073 149 QRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL 227 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 227 (431)
..++.+.++.+++++++ +.+.+++...+..+++ . ..++.+..+..+...+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877 7888999887776665 2 24556666666677778899999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCC-cCccCCCChHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014073 228 LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC-GPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIW 306 (431)
Q Consensus 228 ~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 306 (431)
++|+.+ +++.... .|+.|+++|+.+++.+..+...++++|++. +.++.+++ .+++.+|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999877 4444432 499999999999999998877777765432 11111222 2467889999999999999999999
Q ss_pred HHHHHHHHHc-ccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 014073 307 YFMALILFAG-YLKNAKLSVAGLSICMNILGW-SNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLS 384 (431)
Q Consensus 307 ~~~~~~~~~~-~~~~~~~~~a~~~i~~~i~~~-~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (431)
....++.+++ .+| ++++|.|+.+.|+... ...+..+++++..|.++++ +|.+|.++..++..++...++.+.+
T Consensus 234 ~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998886 666 6699999999999774 5899999999999999995 6789999999999999999999999
Q ss_pred HHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhh
Q 014073 385 LILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQP 426 (431)
Q Consensus 385 ~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 426 (431)
+++.++++++.++|.+|+ ++.+.++++++.++.++...+.
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~ 348 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAY 348 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876 4446667777666666554433
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.94 E-value=1.4e-22 Score=196.78 Aligned_cols=326 Identities=16% Similarity=0.137 Sum_probs=281.2
Q ss_pred cCChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q 014073 97 HISTL-ALAAVSVENSVIAGFSFGAM-LGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQIL 173 (431)
Q Consensus 97 ~lg~~-~~~~~~~a~~l~~~~~~~~~-~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 173 (431)
++|.. +.++|.++.++..++...+. .+++++..|..++.. ++++|+.++..+....+....++.++++ +++++++.
T Consensus 4 ~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv 82 (451)
T PF03023_consen 4 FFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIV 82 (451)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46655 67899999999998833443 468999999999998 8899999999999888888888888777 88999999
Q ss_pred HHc--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCc---chhH
Q 014073 174 SLI--GQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLG---LVGA 248 (431)
Q Consensus 174 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~ 248 (431)
.++ +.+++..+.+...+++..+..++..+..++.+++++++|...+....++.++..++...++... +| +.+.
T Consensus 83 ~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~l 160 (451)
T PF03023_consen 83 RLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYAL 160 (451)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHH
Confidence 987 5678888999999999999999999999999999999999999999888887766655555544 66 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHH
Q 014073 249 AVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGL 328 (431)
Q Consensus 249 ~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 328 (431)
++|..++..+..++.+...+|...+.+. +++ .+.+..|++++...|..+.....++...+++.+++.++.| .++++
T Consensus 161 a~g~~~g~~~~~l~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l 236 (451)
T PF03023_consen 161 AWGVLIGAIIQFLIQLPYLRRFGFRFRP-KFD-WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSAL 236 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccc-cCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHH
Confidence 9999999999999988888875533221 111 1235688999999999999999999999999999998854 89999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccC----CcHH
Q 014073 329 SICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFS----SDPE 403 (431)
Q Consensus 329 ~i~~~i~~~~~-~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~----~~~~ 403 (431)
+.+.++.+++. .+..+++++..|..++...+||.++.++..+++++....+.+|.+++++.+++++++++. -|++
T Consensus 237 ~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~ 316 (451)
T PF03023_consen 237 NYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAE 316 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHH
Confidence 99999999966 568899999999999999999999999999999999999999999999999999999874 2667
Q ss_pred HHHHHHhHHHHHHHHHHHHhHhhhhc
Q 014073 404 VIDLVIDLTPLLALCIVINNIQPVLS 429 (431)
Q Consensus 404 ~~~~~~~~l~~~~~~~~~~~~~~i~~ 429 (431)
..+.....+++++++.++.+++.++.
T Consensus 317 ~~~~ta~~l~~y~~~l~~~~l~~ll~ 342 (451)
T PF03023_consen 317 DTQLTASALRIYALGLPFYALNDLLS 342 (451)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 78899999999999999999887653
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.92 E-value=7.6e-21 Score=181.84 Aligned_cols=357 Identities=13% Similarity=0.060 Sum_probs=296.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhh-cCChH-HHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhhCCCCcchH
Q 014073 68 KKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTL-ALAAVSVENSVIAGFSFGAML-GMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 68 ~~il~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~-~~~~~~~a~~l~~~~~~~~~~-gl~~a~~~~vs~~~g~~~~~~~ 144 (431)
++++|.+.-....++++.+.+++...+++ .+|+. ..+++.++.++.+++--.+.. +++++..|...++..++++|+.
T Consensus 7 ~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~ 86 (518)
T COG0728 7 MSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAA 86 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHH
Confidence 56788888888899999999999777777 68985 678999999999987444444 4689999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014073 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLI-GQ--TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (431)
++..+........+.+.++++ .++.+++.+.. +. +++....+....++..|..++.++.....+.+++.+|...+.
T Consensus 87 ~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a 166 (518)
T COG0728 87 RFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPA 166 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhh
Confidence 887777776666666677766 77888888554 32 233333578888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHH
Q 014073 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVM 300 (431)
Q Consensus 221 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (431)
+..++.++.-+.....+.+..+....+.+++..++-+.+.++.+..++|.+...+.+ +. .+.+..|++.+.-.|..+.
T Consensus 167 ~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~-~~-~~~~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 167 FAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR-FG-FKDPGLKRFLKLMLPALLG 244 (518)
T ss_pred hhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC-CC-CCchhHHHHHHHHHHHHHH
Confidence 999998887775666555543334778999999999999999999998865222211 11 1226889999999999999
Q ss_pred HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHH
Q 014073 301 LCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLI 379 (431)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (431)
....+++..+++.+++.+.+| +++.++.++++.+++. .+..++++...|.++++..++|.++.++..++++++++++
T Consensus 245 ~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999755 8899999999999977 7799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccccccccCC----cHHHHHHHHhHHHHHHHHHHHHhHhhhh
Q 014073 380 GLTLSLILIVTRNQYPALFSS----DPEVIDLVIDLTPLLALCIVINNIQPVL 428 (431)
Q Consensus 380 ~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 428 (431)
++|.++++.++++++++++.. +++......+.+..++++.++..+.-++
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll 375 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLL 375 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999998632 4566788899999999999988876554
No 14
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=1.6e-22 Score=197.89 Aligned_cols=207 Identities=18% Similarity=0.160 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCc
Q 014073 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 62 ~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (431)
.+++.+|++++.++|.++.++.+.....+|+.+++++|++++++++++.++..+. +.+..|++.+..++++|++|+||+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3456799999999999999999999999999999999999999999999999988 889999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--CH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCc
Q 014073 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ--TQ---EISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSK 215 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (431)
|++++..+.++.++...+++..++ +.+.+++.+++.. ++ |+.+.+..|+++.+++.++..++.+..+++||.||
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999988877 7899999999953 33 67889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 216 IMVLAVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 216 ~~~~~~~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
++.+++.++++. ++++++++++.+.+++|+.|+|+++.+++++..+...+.+++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999986 999999999999888999999999999999998877666644
No 15
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.90 E-value=2.4e-21 Score=189.78 Aligned_cols=214 Identities=15% Similarity=0.138 Sum_probs=197.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcc
Q 014073 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 63 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (431)
+++.+|++++.+.|..+..+...+...+.+.+++++|++++|+++++.++.++. ..+..|++++.+++++|++|++|.+
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~~~lvg~~~Ga~~~~ 332 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSASTIITGTRLGKGQIA 332 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 457899999999999999999999999988999999999999999999999988 7899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014073 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (431)
++++..+.+..++...++.+.++ +++++++.++|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++
T Consensus 333 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~ 412 (478)
T PRK10189 333 QAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMW 412 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHH
Confidence 99999999999999999888887 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccC
Q 014073 222 IAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS 277 (431)
Q Consensus 222 ~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 277 (431)
.++++. ++.+++.+++.+..++|+.|.|++..+++.+..++..++++++++++..+
T Consensus 413 i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~~~ 469 (478)
T PRK10189 413 VSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWKYP 469 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccCCC
Confidence 999884 77788888887777899999999999999999998888887766555333
No 16
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=2.9e-21 Score=189.50 Aligned_cols=205 Identities=20% Similarity=0.179 Sum_probs=194.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcch
Q 014073 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 64 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (431)
++.+|++++.++|.+++.+.......++..+++++|++++++++++.++.+++ ..+..|++.+.++.++|++|+||+++
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~~~~v~~~~Ga~~~~~ 313 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMALTIRVGFELGAGRTLD 313 (456)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 46789999999999999999999999999999999999999999999999988 78899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014073 144 MGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (431)
+++..+.++.++..++++..++ +.+.+++.+++..|+|+.+.+..|+++..+..++..++.+..+++||.||++.+++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~ 393 (456)
T PRK01766 314 ARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFI 393 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHH
Confidence 9999999999999999988877 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 223 AAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 223 ~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
++++. ++++++.+++.+..++|+.|+|+++.+++++..++..+++++
T Consensus 394 ~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 394 TFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 789999999888778999999999999999999988888766
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=4.1e-21 Score=186.52 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCC
Q 014073 61 REFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (431)
Q Consensus 61 ~~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 140 (431)
+++++..|++++.++|..+.++.......+-+.+++++|++.+|+++++.++.++. +.+..|++++++++++|++|+||
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCC
Confidence 44558999999999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014073 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (431)
.|++++..+.+..++..+++....+ +++++++.++|..++|+.+.+..++++..+..++.+++.+..+.+||.||++.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 9999999999999999999998887 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCC
Q 014073 220 AVIAAVAL-LLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGAC 272 (431)
Q Consensus 220 ~~~~~~~~-~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 272 (431)
++.++++. .+.+++.+++.+.. +|..|.|++...++.+..+...++++++++
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~ 445 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW 445 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999984 66788888887766 999999999999999999999999888543
No 18
>PRK10459 colanic acid exporter; Provisional
Probab=99.88 E-value=5.6e-19 Score=175.16 Aligned_cols=335 Identities=10% Similarity=0.092 Sum_probs=259.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchHHH
Q 014073 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGV 146 (431)
Q Consensus 68 ~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~ 146 (431)
++..+-+....++++...+.+++-..+++| +|++++|.++.+..+..++......|++.+.. |. +|.+ ++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~~ 75 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--HL 75 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--HH
Confidence 567788888999999999999999999995 89999999999999999885566677777642 21 1211 23
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Q 014073 147 YLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAV 225 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 225 (431)
.....+.+....++...++ +.+.+++..+++ +++. ...+++..+..++..+.....+.+++.++.+.......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~ 150 (492)
T PRK10459 76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS 150 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence 3455566666666666655 555666655554 4442 345777778888888888899999999999999988888
Q ss_pred HHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHHHHHHH
Q 014073 226 ALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEI 305 (431)
Q Consensus 226 ~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 305 (431)
..+...++...+.. .++|+.+..++..++..+..++..+.. +++++.++ + .+++..|++++++.|...+.....
T Consensus 151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~---~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFG-RKIYRPAL-H---FSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHh-cccCCccc-e---ecHHHHHHHHhhhHHHHHHHHHHH
Confidence 87777766665543 468999999999999988776543333 22222111 1 235678999999999999999999
Q ss_pred HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHH
Q 014073 306 WYFMALILFAGYLKNAKLSVAGLSICMNILGWSN-MVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLS 384 (431)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (431)
+...+|..+++.+.+ +++++.|+.+.++..++. .+...+++...|..++. ++|.++.++..++..++...+++|.+
T Consensus 225 ~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 225 LNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887653 678999999999988754 45566788999999885 57889999999999999999999999
Q ss_pred HHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhh
Q 014073 385 LILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPV 427 (431)
Q Consensus 385 ~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 427 (431)
+++.++++++..++.+++ +..+...++++++..++..+...
T Consensus 302 ~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~ 342 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNP 342 (492)
T ss_pred HHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887765 66788899988888777766554
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.88 E-value=2.2e-20 Score=182.61 Aligned_cols=205 Identities=13% Similarity=0.160 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCC
Q 014073 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST-LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQ 140 (431)
Q Consensus 62 ~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~-~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~ 140 (431)
.+++..|++++.++|..++.....+...+.+.+++++|+ +++++++++.++..+. ..+..|++.+..++++|++|+||
T Consensus 228 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~~~lvg~~~Ga~~ 306 (453)
T PRK09575 228 FNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGMQPPVSYYFGARQ 306 (453)
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhcCCC
Confidence 345678999999999999999999999999999998885 5899999999999988 88999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 014073 141 LDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ-TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (431)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (431)
+|++++..+.++.+++..+++..++ +.+.+++.++|+. |+|+.+.+..|+++..++.++..+..+..+++||.||++.
T Consensus 307 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~ 386 (453)
T PRK09575 307 YDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGK 386 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999999999999887 7899999999985 7899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 219 LAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 219 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+++.++...++++++.+++... +|+.|+|+++.+++++..++..+++++
T Consensus 387 ~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 387 ALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888888888765 799999999999999998888776665
No 20
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.86 E-value=6.6e-19 Score=175.30 Aligned_cols=229 Identities=18% Similarity=0.160 Sum_probs=198.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchH
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 144 (431)
+..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++.++....+..+++++..|.++++++++|+++.
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 67899999999999999999999999999866899999999999999998763446789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014073 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQ----TQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (431)
++.++++......++++.+++ +.+++++..++.+ ++|..+.+..++++.+++.++..+..+..+.+++.||++.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 999999999999999999887 7899999998765 56778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHH
Q 014073 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAV 299 (431)
Q Consensus 220 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 299 (431)
++.+..+.++|+++++++++. +|..|+++++.+++.+..++..++.+|+.... +..+..+++.|...+..+
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~as~~ 450 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGI-------LPFGVLKVLAKLVIASAI 450 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------CchHHHHHHHHHHHHHHH
Confidence 999999999999999999876 89999999999999999998887776631110 113455556666555555
Q ss_pred HHH
Q 014073 300 MLC 302 (431)
Q Consensus 300 ~~~ 302 (431)
+..
T Consensus 451 m~~ 453 (502)
T TIGR01695 451 IGG 453 (502)
T ss_pred HHH
Confidence 443
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.86 E-value=1.8e-18 Score=171.08 Aligned_cols=346 Identities=15% Similarity=0.113 Sum_probs=263.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcch
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (431)
+..+++.|.+.....+++...+.+++-...++| +|+++.|.++.+.++..++......|++.+....++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 345788999999999999999999999999995 8999999999999999988666668999999999999876666655
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014073 144 MGVY-LQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (431)
.+.. ....+......+.+.........+. ++ .....+.+..+..+.........+.+|+.++.+.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5555 4444444444444433332222222 12 23345777889999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHHHH
Q 014073 223 AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLC 302 (431)
Q Consensus 223 ~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 302 (431)
.+.. ..-......+.. ....+..++..++..........+..+++.+..+..++. .++.++++++.+.|......
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~ 227 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRF-SLALLKELLRFGLPLLLSSL 227 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHhhHHHHHHH
Confidence 4433 111122222221 345556666666666666655555542221111112221 46799999999999999999
Q ss_pred HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHH
Q 014073 303 VEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLT 382 (431)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 382 (431)
...+...+|+.+.+.+-+ +++++.|+.+.++......+..+++.+..|.+++...+++.++.++..++.+++...++.+
T Consensus 228 ~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (480)
T COG2244 228 LNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIP 306 (480)
T ss_pred HHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998754 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhh
Q 014073 383 LSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVL 428 (431)
Q Consensus 383 ~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 428 (431)
..+++.++++++..++.+++ ...+...++++++...+.++....
T Consensus 307 ~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~ 350 (480)
T COG2244 307 ALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLT 350 (480)
T ss_pred HHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887765 333677777777777777666544
No 22
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.82 E-value=2.6e-17 Score=160.04 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=191.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchH
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 144 (431)
+..|++++...|..++....++...+|+.+.+++++..++++..++++.++....+..++++...|..++...+||.++.
T Consensus 195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~ 274 (451)
T PF03023_consen 195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF 274 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 67899999999999999999999999999999999999999999999999875667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014073 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (431)
++.+++++....++.+|.++. +.+++|+++++. .+.|..+.+...++++++++|++++...+...+.++||++.+
T Consensus 275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~ 354 (451)
T PF03023_consen 275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence 999999999999999999887 889999998763 466778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhC
Q 014073 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSG 270 (431)
Q Consensus 220 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 270 (431)
++.++++.++|++++.++.+. +|..|.++++.++.++..+++.+.++|+
T Consensus 355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 9999999999999999999998888773
No 23
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.79 E-value=9.6e-16 Score=147.05 Aligned_cols=207 Identities=16% Similarity=0.080 Sum_probs=191.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchH
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 144 (431)
+..|++++...|..++....++...+|+.+.+.+.+...+.+..+.++.++..-.+..++++...|..|+...++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 67899999999999999999999999999999999999999999999999874578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHH
Q 014073 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIG----QTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVL 219 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (431)
++..+++++++.++++|.++. ..+++|+++.+. .+++....+...+.+++.+.+++.+..++...+++++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999988 889999998763 355667778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 014073 220 AVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACG 273 (431)
Q Consensus 220 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~ 273 (431)
+++.+++.++|+++++.+... +|..|.++++.++.++++.++++.++|+...
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~ 440 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVY 440 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999888877 8888999999999999999998888875433
No 24
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.79 E-value=6.9e-17 Score=156.92 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=169.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchH
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 144 (431)
+..|++++.+.|..+++........+-+.+++++|++++++++++.++.++. +.+..|++++.+++++|++|+||.|++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 4689999999999999999999999999999999999999999999999999 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC---chhHHH
Q 014073 145 GVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS---KIMVLA 220 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~ 220 (431)
++..+.+..++...+....++ +.+.+++..+|..|+|+.+.+..++++..+..+.........+.++|.+ |++.++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~ 387 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM 387 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 999999999999999998887 7899999999999999999999999998876443323444444444444 599999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 221 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+.+.++..+ ..+..+ ++|+.|.|++..+++.+..++..+++++
T Consensus 388 ~~~~~~~~~----~~~~~~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~ 430 (441)
T PRK10367 388 AVAAAGFAL----TLLTLP--WLGNHGLWLALTVFLALRGLSLAAIWRR 430 (441)
T ss_pred HHHHHHHHH----HHHHHH--HcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887442 111222 3799999999999999999988877665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.76 E-value=4.8e-19 Score=148.48 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchHHHHHHHHHHHH
Q 014073 76 PAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIIL 155 (431)
Q Consensus 76 p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 155 (431)
|.++++++..+...+|+.+++++|++++++++++.++.++. ..+..|++.+..+.++|++|++|+|++++.+++++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999999 77999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH-HHHHHH
Q 014073 156 ITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVAL-LLHTIL 233 (431)
Q Consensus 156 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 233 (431)
..++++..++ +.+.+++..+++.++|..+.+..|+++..++.++..+.....+++++.||++.+++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999988 88999999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 014073 234 SWL 236 (431)
Q Consensus 234 ~~~ 236 (431)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 875
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.75 E-value=4.5e-16 Score=154.42 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-C---C---hHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHH
Q 014073 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGH-I---S---TLALAAV----SVENSVIAGFSFGAMLGMGSALETL 131 (431)
Q Consensus 63 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~-l---g---~~~~~~~----~~a~~l~~~~~~~~~~gl~~a~~~~ 131 (431)
.++.+|++++.++|.+++++...+...+|+.++++ + | .++.+.+ +.+.++.++. ..+..+++.+..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999985 3 2 1122222 3555677766 56788999999999
Q ss_pred HHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014073 132 CGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFL 210 (431)
Q Consensus 132 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 210 (431)
+++.+|++|+++.++..+++..++..++++.+++ ..+++++..++..+++ +..++++.+++.++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887 7889999998865433 5678999999999999999999999
Q ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 211 QAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
++.||++.+++.++++.++|++++++++....+|+.|+++++.+++.+..++..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999873334899999999999999999988887765
No 27
>PRK10459 colanic acid exporter; Provisional
Probab=99.74 E-value=2e-14 Score=142.73 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=173.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcc
Q 014073 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLD 142 (431)
Q Consensus 64 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~ 142 (431)
++..|++++.+.|...+++...+...+|+.+++ .+|++++|.|+.++++.+.....+...++....|..++. ++|.+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 467899999999999999999999999999999 589999999999999998763455566778888988885 67888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014073 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (431)
+.++.+++...+...+++|..++ ..++++++.++.+++ +..+...+++.++...+..+.......+++.||++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 99999999999999999998887 788999998776543 566788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 222 IAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 222 ~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
.+++..+++++..+.+... +|+.|+++++.+++.+...+..++..|
T Consensus 359 ~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888777776655 899999999999999988888877755
No 28
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.73 E-value=4.1e-14 Score=129.08 Aligned_cols=270 Identities=17% Similarity=0.191 Sum_probs=204.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchHHHHHH
Q 014073 71 WYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (431)
Q Consensus 71 l~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 149 (431)
+|.+.-...+++...+.+++-..++.| +|++++|.++...++.+++......|++++....+++...+ +++.+....
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 567778888999999999999999995 89999999999999999885556889999988888886433 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Q 014073 150 RSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLL 229 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 229 (431)
.......+.++........ ...+..+ +.. ..+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~----~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLI----ASFFGNP-SLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcCCc-hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333222 1233333 221 1122222222257778888999999999999999999999888
Q ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014073 230 HTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFM 309 (431)
Q Consensus 230 ~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 309 (431)
..+...+++.. +.++.+..++..++..+..++..++.+|+. + .+....+++..|++++.+.|..+......+...
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKL-R---PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQ 226 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-c---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776666654 345889999999999999888888877633 1 222223367899999999999999999999999
Q ss_pred HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014073 310 ALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNE 356 (431)
Q Consensus 310 ~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~ 356 (431)
.+..+++.+.+ ++++|.|+++.++......+..++.++..|.+++.
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998864 77899999999999999999999999999999885
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.69 E-value=1.2e-14 Score=141.11 Aligned_cols=200 Identities=11% Similarity=0.006 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCc
Q 014073 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 63 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (431)
+++.+|++++.+.|..++++...+...+|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.+++. +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 3567899999999999999999999999999997 899999999999999988443678899999999999995 577
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014073 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (431)
++.++.+++.......++++.+++ .+++++++.++.+++ ++.+.+++++.+++..+...+......+.+.++++...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998888888777 789999999987653 33467788898888888877777777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 221 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
...+...++++++++++++. +|..|+++++.+++.+...+......+
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999998 899999999999999999877765544
No 30
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.62 E-value=2.2e-13 Score=134.91 Aligned_cols=187 Identities=21% Similarity=0.286 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCc
Q 014073 63 FLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 63 ~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (431)
.++.+|++++.++|..+..+...+.+.+|+.+++ .+|++++|.|+.+.++.... ..+...++....|..++.+.++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 4578999999999999999999999999999999 58999999999888888888 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014073 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (431)
++.++..+++..+...++++..++ ..+++|+...+.+++.. .+...+.+.++..++..+.......+++.|+.+..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999988 78999999877655432 267788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHH
Q 014073 221 VIAAVALLLHTILSWLLILKLGLGLVGAAVALNAS 255 (431)
Q Consensus 221 ~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~ 255 (431)
+.+.++.++|++++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999988 8999999998 44
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.54 E-value=8.9e-11 Score=105.69 Aligned_cols=246 Identities=16% Similarity=0.157 Sum_probs=176.6
Q ss_pred HHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 014073 87 LGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFM 165 (431)
Q Consensus 87 ~~~i~~~~i~-~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (431)
.+++-..+++ .+|++++|.|+....+..+.......|+...... ..++|+++.++..+.......+.++....+
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778 4899999999999999998845456667666433 234556666666666665544444444332
Q ss_pred HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 014073 166 YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGL 245 (431)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~ 245 (431)
...+..++ .+++. ..++....+..+...+....++.+++++|.+..........+.......++... +.+.
T Consensus 78 ---~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 148 (251)
T PF13440_consen 78 ---AILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL 148 (251)
T ss_pred ---HHHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 22222233 33332 234566777888889999999999999999999999999888775444444432 3488
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcCccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHH
Q 014073 246 VGAAVALNASWWFIDITRLLYIFSGACGPTWSGFSWKAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSV 325 (431)
Q Consensus 246 ~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (431)
.+..++..++..+..+...+..++ +.+.. + +.+..| .++.+.|..+...........+.++++.+- +++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~~~~ 219 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLRR-KLRLS--F----KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GPEAV 219 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCCC--c----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHH
Confidence 888888888888877766653332 11111 1 122234 789999999999999999999999999843 37899
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 014073 326 AGLSICMNILGWSN-MVSIGMNAAVSVRTSN 355 (431)
Q Consensus 326 a~~~i~~~i~~~~~-~~~~~~~~a~~~~v~~ 355 (431)
|.|+.+.++...+. .+..++++...|.+++
T Consensus 220 g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 220 GIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999888 9999999999999886
No 32
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.49 E-value=4e-14 Score=118.57 Aligned_cols=134 Identities=28% Similarity=0.409 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHH
Q 014073 296 ASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAVFS 375 (431)
Q Consensus 296 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~ 375 (431)
|.+++++.+.+...++..+++++| ++++++++++.++..+...+..+++++..+.+++++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 888999999999999999999996 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhcCC
Q 014073 376 SFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~gi 431 (431)
..+++++.++++..+++++.++|++|+++.+.+.+++++..++.++.+++...+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGI 134 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887653
No 33
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.43 E-value=6.5e-12 Score=118.66 Aligned_cols=131 Identities=23% Similarity=0.284 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCc
Q 014073 62 EFLKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 62 ~~~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (431)
++++..|++++.++|.+++++...+...+|+.+++++|++++++|+++.++.++. ..+..+++++..|.++++++++|.
T Consensus 210 ~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 288 (342)
T TIGR00797 210 PDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL-FMPAFGFGIAVSILVGQALGAGDP 288 (342)
T ss_pred CCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3457889999999999999999999999999999999999999999999999988 778899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014073 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWM 193 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 193 (431)
++.++..+++.++...++++..++ .++.+++.+++..|+++.+.+..++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 289 KRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999887 7899999999999999999888887764
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.04 E-value=9.6e-10 Score=106.63 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=181.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCc
Q 014073 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST--LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 64 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~--~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (431)
++.++++++.+.|..+...++.....+-....|.++. .++++.++........ .....+++.+++..++..+|+++.
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~-~~~~~~~~~a~strv~neLGag~p 321 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH-LMIPGAFSAAVSTRVSNELGAGKP 321 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHcCCCh
Confidence 7889999999999999999999999999999998875 5899999999999887 678889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014073 142 DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (431)
+.+|.....+...+...+...... +...+.+...|..++|+.+...+.....+++........+..+..+|.|+.+...
T Consensus 322 ~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga 401 (473)
T KOG1347|consen 322 KRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGA 401 (473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceE
Confidence 999999999999998888888776 7788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 221 VIAAVA-LLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 221 ~~~~~~-~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+.++.. -++.+.....+-+..++|..|.|.+...+..+..........+
T Consensus 402 ~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~ 451 (473)
T KOG1347|consen 402 VINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR 451 (473)
T ss_pred EEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee
Confidence 888887 3666666666666678999999999999966666666655554
No 35
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.98 E-value=4.3e-06 Score=74.25 Aligned_cols=313 Identities=12% Similarity=0.048 Sum_probs=191.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCc
Q 014073 65 KEGKKLWYLAGPAIFMTICQYPLGAITQVFSGHIST---LALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL 141 (431)
Q Consensus 65 ~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~~lg~---~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~ 141 (431)
..++.++++-.|..++.+...+...+-+.-+++-.+ +.+|+|+++..+.-++ ..+...+-+....+ +++++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~-----V~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVF-----VNSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHH-----hcchh
Confidence 457889999999999999999999988888886333 3499999999999988 66777776664444 33333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-H-HhHHHHH-HHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhH
Q 014073 142 DMMGVYLQRSWIILITTALMLMFM-Y-IFAQQIL-SLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMV 218 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (431)
++-+ .+......+.+......++ + .+...++ ..++.++++.+.++..+.++.+--++.++....++++.-.+++..
T Consensus 82 srr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 3322 2222223333333333333 3 3444444 467889999999999999999999999999999998887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-C--CcchhHHHHHHHHHHHHHHH--HHHHHHhCCCcCccCCCChHhHHHHHHHHHH
Q 014073 219 LAVIAAVALLLHTILSWLLILKL-G--LGLVGAAVALNASWWFIDIT--RLLYIFSGACGPTWSGFSWKAFHSLWSFVRL 293 (431)
Q Consensus 219 ~~~~~~~~~~~~i~~~~~li~~~-~--~g~~g~~~a~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (431)
....++...+..+++..+++... + -++.--.++...+..+.+-+ +.++..-++...........+...+++++++
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F 240 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKF 240 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHH
Confidence 77777776666666655555321 1 11111112222222222221 1222111111222222223345688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-cchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHH----
Q 014073 294 SLASAVMLCVEIWYFMALILFAGY-LKNA---KLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTA---- 365 (431)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~---- 365 (431)
.+|.+.........--+.+.++++ ++++ ++++++..+.+...-+.+....-+. +..|..- .+++.++.
T Consensus 241 ~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~r-~~~paf~---~~~~~~~~~~~~ 316 (345)
T PF07260_consen 241 WWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTELR-AVYPAFD---KNNPQNKLRNCG 316 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhHH-hhCchhh---ccCccccccccc
Confidence 999999999888888888888887 5443 3566665555554444433333222 2222221 12222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Q 014073 366 ----KLSLVVAVFSSFLIGLTLSLILI 388 (431)
Q Consensus 366 ----~~~~~~~~~~~~~~~~~~~~~~~ 388 (431)
+..+++....++.+++..+..++
T Consensus 317 ~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 317 NPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33677777777777777766654
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.58 E-value=1.2e-05 Score=79.60 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=163.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCc---
Q 014073 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQL--- 141 (431)
Q Consensus 68 ~~il~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~--- 141 (431)
+++++++.....++++..+.+--|.+++.. ...++-|.|++++.+-+++.-.+...+--+.-...++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~~ 332 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKKK 332 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchhh
Confidence 678999999999999999999999999997 46678999999999999887778888988888888887765432
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 014073 142 ------DMMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS 214 (431)
Q Consensus 142 ------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 214 (431)
++..+.+...+++...+++++... ...++.++.+++++.-....+...+++++..+|+.+++.+..++.++..
T Consensus 333 ~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a 412 (549)
T PF04506_consen 333 QPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVA 412 (549)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhC
Confidence 345567777777778888777666 7778888888765443344457789999999999999999999999987
Q ss_pred chhHHHHH---HHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 215 KIMVLAVI---AAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 215 ~~~~~~~~---~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
..+..... ..+..++.+..++++... ++|..|..+|+++...+..+...+++++
T Consensus 413 ~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 413 SESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554433 344456667888888876 7999999999999999999999888876
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.57 E-value=1.3e-05 Score=65.40 Aligned_cols=78 Identities=26% Similarity=0.336 Sum_probs=73.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 190 ATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
+++.+++.++..+.....+.+++.||++..++.+.++.++|+++++++++. +|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999999999999999887 999999999999999999998888877
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.35 E-value=0.00025 Score=70.33 Aligned_cols=357 Identities=11% Similarity=-0.018 Sum_probs=191.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHhhCCCCcchHHHHHH
Q 014073 72 YLAGPAIFMTICQYPLGAITQVF-SGHISTLALAAVSVENSVIA-GFSFGAMLGMGSALETLCGQAYGAGQLDMMGVYLQ 149 (431)
Q Consensus 72 ~~~~p~~~~~~~~~~~~~i~~~~-i~~lg~~~~~~~~~a~~l~~-~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~ 149 (431)
+.+.-.++.+++..+.+++-+.+ +-+++++.+|..++=..+.. .+.+..--++..++.+.-.+...+++.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 44555677788888887765544 55799998888755444443 22255666888886654333322223334434333
Q ss_pred HHHHHHHHHHHHHHHH-H-HhHHHH----HHHc-CCCHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC----c
Q 014073 150 RSWIILITTALMLMFM-Y-IFAQQI----LSLI-GQTQE---ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQS----K 215 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~-~-~~~~~l----~~~~-~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~----~ 215 (431)
.+..+..++++++..+ + +...++ ..+. ...++ ..+.....+.+...+...-.+...+....|..- |
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 3333444444433222 1 111111 1111 11111 111222233444444444444444433333333 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-cCCcc------hhHHHHHHHHHHHHHHHHHHHHHh-C-CC----cCccCCCCh-
Q 014073 216 IMVLAVIAAVALLLHTILSWLLILK-LGLGL------VGAAVALNASWWFIDITRLLYIFS-G-AC----GPTWSGFSW- 281 (431)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~li~~-~~~g~------~g~~~a~~i~~~~~~~~~~~~~~~-~-~~----~~~~~~~~~- 281 (431)
.+.-........+.+.......... .+++. .-+.++..+++....+........ . .. ....++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 3333333333344443333332111 01111 123455556665554433222111 1 11 111111111
Q ss_pred --HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 014073 282 --KAFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGY--LKNAKLSVAGLSICMNILGW-SNMVSIGMNAAVSVRTSNE 356 (431)
Q Consensus 282 --~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~i~~~-~~~~~~~~~~a~~~~v~~~ 356 (431)
.....-++.++.........+.-.+...-+.+++.. +.+ .++-|.|.+++++.++ .=.+...+..+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011124678888888888888888888888888887 554 5677899999999777 4455677888888888887
Q ss_pred hccCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhh
Q 014073 357 LGAAHP---------RTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPV 427 (431)
Q Consensus 357 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 427 (431)
..+++. +++.+.....+++...+++.+..+-...++.+.+++.++.-.-..+...+++++...++.++|.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765433 34555666666666666666666656666666666654333333468889999999999999887
Q ss_pred hc
Q 014073 428 LS 429 (431)
Q Consensus 428 ~~ 429 (431)
..
T Consensus 404 ~E 405 (549)
T PF04506_consen 404 TE 405 (549)
T ss_pred HH
Confidence 64
No 39
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.0018 Score=60.76 Aligned_cols=200 Identities=15% Similarity=0.093 Sum_probs=151.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCcchH
Q 014073 68 KKLWYLAGPAIFMTICQYPLGAITQVFSGH---ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQAYGAGQLDMM 144 (431)
Q Consensus 68 ~~il~~~~p~~~~~~~~~~~~~i~~~~i~~---lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~~g~~~~~~~ 144 (431)
++.++......-+.++..+.+-=|.+++.. +.-.+-|.|.+.+.+-+++.-.+...+--..-...+|...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 456666667777888888888888988883 44456777888877777766667778888888888888777766665
Q ss_pred HH---HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHH
Q 014073 145 GV---YLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLA 220 (431)
Q Consensus 145 ~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (431)
++ +....+.+...+++.++.. ...++.++.+++++.-....+...+++++..+|+.+++.+..++..+.+..+..-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 54 4555666666677666555 6677778888776544444455789999999999999999999999987655443
Q ss_pred ---HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 014073 221 ---VIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFS 269 (431)
Q Consensus 221 ---~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 269 (431)
....+..+..++.+++++-. +|..|..+|+++...+..+...+++++
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567778899999998 778999999999999998888777766
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=0.014 Score=54.91 Aligned_cols=358 Identities=10% Similarity=-0.024 Sum_probs=180.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH-HHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhCCCCcch
Q 014073 66 EGKKLWYLAGPAIFMTICQYPLGAI-TQVFSGHISTLALAAVSVENSVIAGF-SFGAMLGMGSALETLCGQAYGAGQLDM 143 (431)
Q Consensus 66 ~~~~il~~~~p~~~~~~~~~~~~~i-~~~~i~~lg~~~~~~~~~a~~l~~~~-~~~~~~gl~~a~~~~vs~~~g~~~~~~ 143 (431)
...+-.+.+.-.+..+++..+.++. +++.+.+++++.+|..++-..+.+-. .+..--++.-|..+.-++. +++.++
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te 83 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTE 83 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHH
Confidence 4455566666777777777777765 55555689999999887766666522 1444456666644332221 123345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHHH
Q 014073 144 MGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQE-ISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAVI 222 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (431)
..+..+.+--+..+++++...+++. +... .++. ..+.-..-+.+...+...-.+...+.-..|..-+.+.-...
T Consensus 84 ~~n~~wlS~~L~~~i~~~~i~~wl~---~~~s--~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 84 FINLLWLSVPLQTAINVACIYFWLG---FLSS--SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHH---Hhhc--cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444333111 1110 0110 01111112333334444444444444455555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCcchhHHHHHHHHHHHHHHHHHHH-HHhCC-CcC-----------ccCCCChHhHHHH
Q 014073 223 AAVALLLHTILSWLLILKL--GLGLVGAAVALNASWWFIDITRLLY-IFSGA-CGP-----------TWSGFSWKAFHSL 287 (431)
Q Consensus 223 ~~~~~~~~i~~~~~li~~~--~~g~~g~~~a~~i~~~~~~~~~~~~-~~~~~-~~~-----------~~~~~~~~~~~~~ 287 (431)
..+..++.-+..+...... .+++..-++|.........+...+. ++.++ ... +....+......-
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd 238 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFFD 238 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccccc
Confidence 5555555533333333321 1344444444444443333322222 22222 000 0000010001122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccCChHHH
Q 014073 288 WSFVRLSLASAVMLCVEIWYFMALILFAGYLKN-AKLSVAGLSICMNILGW-SNMVSIGMNAAVSVRTSNELGAAHPRTA 365 (431)
Q Consensus 288 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~i~~~i~~~-~~~~~~~~~~a~~~~v~~~~g~~~~~~~ 365 (431)
++..+.......+...-++...-+..+++.... +-.+=|.|.+++++-++ .-++...+........++...+++.|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 344455555555555555444444444443211 01134578788887555 4566777888888888888877777777
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhcC
Q 014073 366 KLSLV---VAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSG 430 (431)
Q Consensus 366 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~g 430 (431)
|+... ..++....+++.....-...++.+..++.+..-.-..+...++++++..++.++|.+..|
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEa 386 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEA 386 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHH
Confidence 76554 444444444444444444444555666654332233356889999999999999987653
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.27 E-value=0.002 Score=58.32 Aligned_cols=71 Identities=13% Similarity=0.121 Sum_probs=66.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 014073 64 LKEGKKLWYLAGPAIFMTICQYPLGAITQVFSG-HISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA 135 (431)
Q Consensus 64 ~~~~~~il~~~~p~~~~~~~~~~~~~i~~~~i~-~lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~ 135 (431)
++..|++++.+.|..++.+...+...+|+.+++ ..|++++|.|+.+.++.... ..+...+.+...|..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~-~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI-SFLLSSISTVLFPRLSRL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999 58999999999999999988 778889999999999875
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.91 E-value=0.046 Score=49.27 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCh
Q 014073 284 FHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYL-KNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHP 362 (431)
Q Consensus 284 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~ 362 (431)
...++++.+.-+|..++.....+.-.+.+.-+++- -+..+.+|+|+++..+.-++..+...+.+.....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 45778999999999999999999999988887763 3334669999999999999999999888877766554 22
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHccccc-ccccCCcHHHHHHHHhHHHHHHHHHHHHhHhhhhcCC
Q 014073 363 RTAKLSLVVAVFSSFLIG-LTLSLILIVTRNQY-PALFSSDPEVIDLVIDLTPLLALCIVINNIQPVLSGE 431 (431)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i-~~lf~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~gi 431 (431)
+|.+..... ...+.+.. +...+..--++..+ -+++.-|+++.+.++..+.++.+.-+++++.-+.+|+
T Consensus 82 srr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGI 151 (345)
T PF07260_consen 82 SRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGI 151 (345)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 222222221 11111111 11222222333333 3456778999999999999999999999999988885
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.23 E-value=0.033 Score=49.71 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=60.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 014073 69 KLWYLAGPAIFMTICQYPLGAITQVFSGH-ISTLALAAVSVENSVIAGFSFGAMLGMGSALETLCGQA 135 (431)
Q Consensus 69 ~il~~~~p~~~~~~~~~~~~~i~~~~i~~-lg~~~~~~~~~a~~l~~~~~~~~~~gl~~a~~~~vs~~ 135 (431)
+.++.+.|..++.+.......+|.++++. +|++++|.|+.+.++.......+..++++...|..+|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37999999999999999999999999996 99999999999999999772378899999999988763
No 44
>COG4267 Predicted membrane protein [Function unknown]
Probab=95.47 E-value=2.2 Score=39.74 Aligned_cols=264 Identities=9% Similarity=0.036 Sum_probs=148.9
Q ss_pred HHHHHHHHHhHHHHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHH
Q 014073 118 FGAMLGMGSALETLCGQAYGAGQLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQEISNAAGTFATWMIPQL 197 (431)
Q Consensus 118 ~~~~~gl~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 197 (431)
..+..|+....++.+|...=++|.+++..-+.....+....+..+..+. -....+... . |=.......
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v-------f~~~~~~si---~--yk~l~~~~F 141 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV-------FFVNNQYSI---V--YKILACALF 141 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh-------hhhcCchhH---H--HHHHHHHHH
Confidence 4567888999999999988888888887766665555555544443221 111111111 1 111223334
Q ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHHhCCCcCccC
Q 014073 198 FAYALNFPMVKFLQAQSKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDITRLLYIFSGACGPTWS 277 (431)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 277 (431)
.......+...++.+.+|.+...+.-.++.++.+.+..++-. .+..|..++.-++..+.......++.|.-...+..
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i 218 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRI 218 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccccc
Confidence 445556666778899999999998888888888887777664 58999999999999999888888777631111111
Q ss_pred CCChH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHH------HHHHHHHHHHHHHH-----HHHH
Q 014073 278 GFSWK-AFHSLWSFVRLSLASAVMLCVEIWYFMALILFAGYLKNAKLSVAG------LSICMNILGWSNMV-----SIGM 345 (431)
Q Consensus 278 ~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~i~~~i~~~~~~~-----~~~~ 345 (431)
.++.. ..+.... ..+......++.++++.+.=..+++.+..+. |-+..-.+.+...| ...+
T Consensus 219 ~FdFL~~~~~y~S-------LllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~l 291 (467)
T COG4267 219 GFDFLLYRRKYPS-------LLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISL 291 (467)
T ss_pred ceehhhhhhcchH-------HHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeee
Confidence 12211 1111212 2222333344455554443222221111111 22222223332222 3344
Q ss_pred HHHHHHHHHhhhcc-----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCcHH
Q 014073 346 NAAVSVRTSNELGA-----------AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPE 403 (431)
Q Consensus 346 ~~a~~~~v~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~ 403 (431)
.+...+.--+.+.+ ++.++.....+..+.-.+-+....++.++++++.+..+|.-++-
T Consensus 292 ET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~ 360 (467)
T COG4267 292 ETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY 360 (467)
T ss_pred eehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 44555443333221 22334444555555556667777888889999999998876543
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=70.79 E-value=98 Score=29.37 Aligned_cols=93 Identities=10% Similarity=0.169 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCchhHHHH
Q 014073 143 MMGVYLQRSWIILITTALMLMFM-YIFAQQILSLIGQTQEISNAAGTFATWMIPQLFAYALNFPMVKFLQAQSKIMVLAV 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (431)
+.....++.+.-..-+-...++. ++.++.+..+++-++-. .+..++...+..........-.+.--.++.+..+.
T Consensus 321 kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~ 396 (467)
T COG4267 321 KMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALE 396 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34444555555555555555554 77889999998765433 33455555555555444444445555677777877
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014073 222 IAAVALLLHTILSWLLIL 239 (431)
Q Consensus 222 ~~~~~~~~~i~~~~~li~ 239 (431)
.+..-.+.|-++++++..
T Consensus 397 ~t~~fli~N~ilT~i~l~ 414 (467)
T COG4267 397 LTALFLISNGILTFIFLE 414 (467)
T ss_pred hhhHHHHHhHHHHHHHHH
Confidence 788888889999888875
No 46
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=63.29 E-value=52 Score=23.52 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014073 345 MNAAVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLIL 387 (431)
Q Consensus 345 ~~~a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (431)
++...+..+...+.+||++.+++..+++-+++.+-... +++.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~-g~~~ 77 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII-GIVI 77 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH-HHHH
Confidence 33444556777888999999999999998888554433 4443
No 47
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=54.61 E-value=1e+02 Score=29.81 Aligned_cols=75 Identities=8% Similarity=-0.041 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHH
Q 014073 294 SLASAVMLCVEIWYFMALILFAGYLKNAKLSVAGLSICMNILGWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVAV 373 (431)
Q Consensus 294 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~~ 373 (431)
+-|.+++...-.+.-..-.++.+..-++ ...+..+......|++.+++.++|+.+|+.+..+-+|...-++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~---------~ral~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGG---------DRALALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCc---------hhhhhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 4566666655444444445555544332 2334455577889999999999999999999999999888776
Q ss_pred HHHH
Q 014073 374 FSSF 377 (431)
Q Consensus 374 ~~~~ 377 (431)
....
T Consensus 450 Afiv 453 (510)
T KOG2468|consen 450 AFIV 453 (510)
T ss_pred HHHH
Confidence 4433
No 48
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=48.60 E-value=70 Score=27.70 Aligned_cols=62 Identities=3% Similarity=0.044 Sum_probs=31.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCH---------HHHHHHHHHHHHHHhHHHHHH
Q 014073 140 QLDMMGVYLQRSWIILITTALMLMFMYIFAQQILSLIGQTQ---------EISNAAGTFATWMIPQLFAYA 201 (431)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~ 201 (431)
+++...+.+..++...+++-+++++++.+..++..+++.+. +..+....|+++++.++|...
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 33444455555554444444444445666677777665321 112234556666666666554
No 49
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=30.65 E-value=3.7e+02 Score=23.52 Aligned_cols=37 Identities=27% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCcCCCccccccCcchh-hhhcccccccCCCCCCCCcc
Q 014073 1 MENNAKQPLISPLLEEED-QEQNRKPQNHLLVPESLPAV 38 (431)
Q Consensus 1 ~~~~~~~~l~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~ 38 (431)
|+||+ -+|.||++|+++ +..+..+-+...++|-+...
T Consensus 1 MknNy-~~LksslDEe~~lk~d~EIDLEKG~lpeynSee 38 (247)
T PF03303_consen 1 MKNNY-TSLKSSLDEEDELKTDHEIDLEKGPLPEYNSEE 38 (247)
T ss_pred CCCCc-cccCCccchhcccCCCCceecccCCCCcccCCC
Confidence 67776 478899998887 33333333333444443333
No 50
>PRK10739 putative antibiotic transporter; Provisional
Probab=27.96 E-value=3.2e+02 Score=23.37 Aligned_cols=65 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHH
Q 014073 348 AVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLA 416 (431)
Q Consensus 348 a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~ 416 (431)
+..|..-..-...+.++-|+..++.. ..+..+.+++.++++.+.++|.-+-+..+.+...+....
T Consensus 19 g~ipiflslt~~~~~~~r~~ia~~a~----~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~i 83 (197)
T PRK10739 19 GNLPIFMSVLKHLEPKRRRAIMIREL----LIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLI 83 (197)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
No 51
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=27.83 E-value=2.3e+02 Score=20.22 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=24.6
Q ss_pred HHHHHhhCCCCcchHHHHHHHHHHHHHHHHHHH
Q 014073 130 TLCGQAYGAGQLDMMGVYLQRSWIILITTALML 162 (431)
Q Consensus 130 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (431)
..+-..+.+||.+++++.-+++..++.+..+..
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 556677889999999988888887775544443
No 52
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.98 E-value=4.2e+02 Score=22.74 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHH
Q 014073 348 AVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLA 416 (431)
Q Consensus 348 a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~ 416 (431)
+..|.....-+..+.++-++..++.. +.+..+.+++.++++.+.++|.-+-+....+...+....
T Consensus 22 g~ipvfl~lt~~~~~~~r~~ia~~~~----l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~i 86 (201)
T TIGR00427 22 GNIPIFISLTEYYTAAERNKIAKKAN----ISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTI 86 (201)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
No 53
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=22.05 E-value=5.8e+02 Score=22.89 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhH
Q 014073 361 HPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDL 411 (431)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~ 411 (431)
..+.+++..-.+..++....+.-++..+.+++ ..++.++.+....+...
T Consensus 110 s~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~ 158 (261)
T PF10160_consen 110 SRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWG 158 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCee
Confidence 44555555555556666666666666666665 55665554444443333
No 54
>PRK11111 hypothetical protein; Provisional
Probab=21.39 E-value=5.4e+02 Score=22.32 Aligned_cols=72 Identities=10% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCcHHHHHHHHhHHHHHHHHHHHHh
Q 014073 348 AVSVRTSNELGAAHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQYPALFSSDPEVIDLVIDLTPLLALCIVINN 423 (431)
Q Consensus 348 a~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~~~~~~~~~~~ 423 (431)
+..|..-..-...+.++-|+..++.. +....+.+++.++++++.++|+-+-+..+.+..++....-.....+
T Consensus 25 g~ipiflslt~~~s~~~r~~ia~~a~----l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 25 GILPVFISMTSHQTAAERNKTNLTAN----LSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
No 55
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=3.8e+02 Score=22.01 Aligned_cols=14 Identities=43% Similarity=0.489 Sum_probs=5.6
Q ss_pred ccCCCCCCCCcccc
Q 014073 27 NHLLVPESLPAVST 40 (431)
Q Consensus 27 ~~~~~~~~~~~~~~ 40 (431)
....+++.+|..++
T Consensus 69 ~~e~v~e~qP~~St 82 (181)
T KOG3249|consen 69 DDEDVPEKQPPSST 82 (181)
T ss_pred ccccCchhcCCccc
Confidence 33334444444333
Done!