Query 014073
Match_columns 431
No_of_seqs 260 out of 2608
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 05:00:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014073.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014073hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 21.0 2.1E+02 0.015 23.4 19.3 26 243-268 407-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 16.6 2.4E+02 0.018 22.3 18.1 9 243-251 376-384 (417)
3 d1nkzb_ f.3.1.1 (B:) Light-har 8.2 1.6E+02 0.012 15.4 4.6 35 360-394 6-40 (41)
4 d1m56d_ f.23.8.1 (D:) Bacteria 6.2 2.2E+02 0.016 15.1 3.9 32 356-387 3-34 (42)
5 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.2 2.2E+02 0.016 16.1 1.7 26 353-378 2-27 (53)
6 d1lghb_ f.3.1.1 (B:) Light-har 4.2 3.2E+02 0.023 14.6 3.3 34 360-393 9-42 (43)
7 d1ijdb_ f.3.1.1 (B:) Light-har 3.9 3.3E+02 0.024 14.1 4.7 33 360-392 7-39 (40)
8 d2csba3 a.60.2.4 (A:410-464) T 3.1 3E+02 0.022 14.6 1.6 11 360-370 23-33 (55)
9 d1q90b_ f.21.1.2 (B:) Cytochro 3.0 9E+02 0.066 17.7 6.5 64 198-261 91-155 (212)
10 d1j1va_ a.4.12.2 (A:) Chromoso 2.9 5.3E+02 0.039 16.0 3.1 37 336-372 35-71 (94)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=20.99 E-value=2.1e+02 Score=23.44 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=13.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH
Q 014073 243 LGLVGAAVALNASWWFIDITRLLYIF 268 (431)
Q Consensus 243 ~g~~g~~~a~~i~~~~~~~~~~~~~~ 268 (431)
.|..+..+.......+..++......
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655555555555555444444433
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=16.55 E-value=2.4e+02 Score=22.33 Aligned_cols=9 Identities=33% Similarity=0.689 Sum_probs=3.9
Q ss_pred CcchhHHHH
Q 014073 243 LGLVGAAVA 251 (431)
Q Consensus 243 ~g~~g~~~a 251 (431)
+|.....+.
T Consensus 376 ~g~~~~~~~ 384 (417)
T d1pv7a_ 376 IGFQGAYLV 384 (417)
T ss_dssp HCHHHHHHH
T ss_pred HCHHHHHHH
Confidence 454444433
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=8.24 E-value=1.6e+02 Score=15.42 Aligned_cols=35 Identities=3% Similarity=-0.029 Sum_probs=27.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 014073 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQY 394 (431)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (431)
++.|++.+....+.+....++++.=++.+...+|+
T Consensus 6 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 6 EQSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 35688899999999999988888777766665553
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.23 E-value=2.2e+02 Score=15.12 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=17.9
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014073 356 ELGAAHPRTAKLSLVVAVFSSFLIGLTLSLIL 387 (431)
Q Consensus 356 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (431)
-+|+-|.+.-+|...--+++..-.++.+.+++
T Consensus 3 kHG~MDi~vQEKTF~gFik~~t~~~i~~i~~l 34 (42)
T d1m56d_ 3 VAGSMDITQQEKTFAGFVRMVTWAAVVIVAAL 34 (42)
T ss_dssp CTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666665555444444333
No 5
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.23 E-value=2.2e+02 Score=16.07 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=16.7
Q ss_pred HHhhhccCChHHHHHHHHHHHHHHHH
Q 014073 353 TSNELGAAHPRTAKLSLVVAVFSSFL 378 (431)
Q Consensus 353 v~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (431)
+++.+|++..+-+++-......++..
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a 27 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAV 27 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 45677777777777766666654443
No 6
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.21 E-value=3.2e+02 Score=14.59 Aligned_cols=34 Identities=3% Similarity=0.006 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 014073 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRNQ 393 (431)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (431)
++.++..+.+..++..-..++++.=++...-.++
T Consensus 9 ~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 9 EEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666677777766666666655555544443
No 7
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=3.87 E-value=3.3e+02 Score=14.11 Aligned_cols=33 Identities=3% Similarity=0.020 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 014073 360 AHPRTAKLSLVVAVFSSFLIGLTLSLILIVTRN 392 (431)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (431)
++.+++.+....+.+....++++.=++.+...+
T Consensus 7 ~eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 7 EQAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 456788899999999888888876666554443
No 8
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.15 E-value=3e+02 Score=14.60 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=7.9
Q ss_pred CChHHHHHHHH
Q 014073 360 AHPRTAKLSLV 370 (431)
Q Consensus 360 ~~~~~~~~~~~ 370 (431)
||+++++++.+
T Consensus 23 gnpervkqlar 33 (55)
T d2csba3 23 GNPERVKQLAR 33 (55)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 57788877765
No 9
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.98 E-value=9e+02 Score=17.72 Aligned_cols=64 Identities=13% Similarity=-0.036 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Q 014073 198 FAYALNFPMVKFLQAQ-SKIMVLAVIAAVALLLHTILSWLLILKLGLGLVGAAVALNASWWFIDI 261 (431)
Q Consensus 198 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~~~a~~i~~~~~~~ 261 (431)
.+.....+.+.++.|. ++++...+..-+...+-....-+.-+.+.+|-.+.+-+++..+....+
T Consensus 91 ~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~~~l~~~i 155 (212)
T d1q90b_ 91 VLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAI 155 (212)
T ss_dssp HHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHH
Confidence 3334455556655444 666666666666655555555666667779998888888888876554
No 10
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.85 E-value=5.3e+02 Score=15.96 Aligned_cols=37 Identities=5% Similarity=-0.023 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHHH
Q 014073 336 GWSNMVSIGMNAAVSVRTSNELGAAHPRTAKLSLVVA 372 (431)
Q Consensus 336 ~~~~~~~~~~~~a~~~~v~~~~g~~~~~~~~~~~~~~ 372 (431)
.+.+.+..-......+-+|+.+|.+|+.-+-...+..
T Consensus 35 ~va~yL~r~~~~~sl~~Ig~~fg~rdHsTV~~a~kki 71 (94)
T d1j1va_ 35 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 71 (94)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHH
Confidence 3344455566666778889999888888877776653
Done!