Query 014077
Match_columns 431
No_of_seqs 161 out of 1341
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 01:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 3E-126 8E-131 899.8 31.4 424 1-429 1-441 (443)
2 PLN00221 tubulin alpha chain; 100.0 4E-110 8E-115 851.9 33.3 430 1-430 1-449 (450)
3 PTZ00335 tubulin alpha chain; 100.0 2E-108 4E-113 839.0 33.7 423 1-423 1-442 (448)
4 PTZ00010 tubulin beta chain; P 100.0 5E-105 1E-109 814.7 31.9 412 1-420 1-429 (445)
5 PLN00220 tubulin beta chain; P 100.0 6E-104 1E-108 808.7 32.1 411 1-419 1-428 (447)
6 cd02186 alpha_tubulin The tubu 100.0 1E-103 2E-108 803.6 31.7 415 2-416 1-434 (434)
7 PTZ00387 epsilon tubulin; Prov 100.0 2E-102 4E-107 795.4 32.3 409 1-421 1-454 (465)
8 PLN00222 tubulin gamma chain; 100.0 2E-102 5E-107 794.7 32.7 414 1-420 2-445 (454)
9 cd02188 gamma_tubulin Gamma-tu 100.0 2E-102 4E-107 791.2 30.1 406 2-413 1-431 (431)
10 cd02187 beta_tubulin The tubul 100.0 4E-102 9E-107 790.2 32.5 407 2-416 1-424 (425)
11 cd02190 epsilon_tubulin The tu 100.0 2.5E-98 5E-103 751.5 29.3 379 2-416 1-379 (379)
12 KOG1374 Gamma tubulin [Cytoske 100.0 2.1E-97 5E-102 704.5 27.9 412 1-418 2-441 (448)
13 cd02189 delta_tubulin The tubu 100.0 5.9E-95 1.3E-99 741.4 32.8 399 4-414 2-445 (446)
14 cd06059 Tubulin The tubulin su 100.0 1.7E-90 3.6E-95 699.3 30.0 381 3-415 1-382 (382)
15 KOG1376 Alpha tubulin [Cytoske 100.0 5.8E-79 1.3E-83 577.1 17.0 387 1-410 1-406 (407)
16 KOG1375 Beta tubulin [Cytoskel 100.0 6E-70 1.3E-74 518.5 14.4 329 41-417 22-350 (369)
17 cd00286 Tubulin_FtsZ Tubulin/F 100.0 2.5E-65 5.5E-70 507.2 24.5 328 3-362 1-328 (328)
18 cd06060 misato Human Misato sh 100.0 1.7E-46 3.7E-51 383.8 29.8 403 2-415 1-493 (493)
19 PF00091 Tubulin: Tubulin/FtsZ 100.0 2.7E-48 5.8E-53 363.0 9.8 202 3-206 1-215 (216)
20 smart00864 Tubulin Tubulin/Fts 100.0 7.9E-37 1.7E-41 280.4 10.2 178 42-227 10-192 (192)
21 cd02202 FtsZ_type2 FtsZ is a G 100.0 5E-33 1.1E-37 276.3 15.5 214 1-243 1-226 (349)
22 KOG2530 Members of tubulin/Fts 100.0 9.7E-30 2.1E-34 247.9 11.8 224 1-237 1-323 (483)
23 cd02191 FtsZ FtsZ is a GTPase 100.0 1.8E-28 3.8E-33 239.2 13.5 205 3-240 2-206 (303)
24 cd02201 FtsZ_type1 FtsZ is a G 99.9 3.7E-27 8.1E-32 231.0 11.6 207 4-242 3-209 (304)
25 TIGR00065 ftsZ cell division p 99.9 1.2E-26 2.5E-31 229.9 12.5 206 3-241 19-224 (349)
26 PRK13018 cell division protein 99.9 1.6E-25 3.5E-30 222.5 12.8 206 3-241 30-235 (378)
27 PRK09330 cell division protein 99.9 2.2E-23 4.7E-28 207.5 11.2 207 3-241 15-221 (384)
28 PF03953 Tubulin_C: Tubulin C- 99.9 7.1E-23 1.5E-27 175.1 10.2 126 244-374 1-126 (126)
29 PF14881 Tubulin_3: Tubulin do 99.9 5.4E-22 1.2E-26 178.9 11.1 133 81-225 40-180 (180)
30 COG0206 FtsZ Cell division GTP 99.5 4.9E-14 1.1E-18 137.8 12.8 206 4-242 14-219 (338)
31 PF10644 Misat_Tub_SegII: Misa 98.9 9.8E-10 2.1E-14 92.2 4.6 53 2-54 1-68 (115)
32 smart00865 Tubulin_C Tubulin/F 98.3 4.7E-07 1E-11 76.0 2.7 114 229-373 1-119 (120)
33 PF13809 Tubulin_2: Tubulin li 98.0 7.1E-05 1.5E-09 75.0 13.3 164 5-177 1-219 (345)
34 PF12953 DUF3842: Domain of un 75.2 5.1 0.00011 34.0 4.4 44 124-181 6-50 (131)
35 PRK14484 phosphotransferase ma 72.5 3.2 7E-05 35.1 2.7 41 97-141 42-83 (124)
36 PF06908 DUF1273: Protein of u 71.3 15 0.00033 33.1 6.9 108 95-221 27-135 (177)
37 PF03610 EIIA-man: PTS system 71.0 5.2 0.00011 33.1 3.6 33 95-127 39-71 (116)
38 cd00006 PTS_IIA_man PTS_IIA, P 63.2 11 0.00023 31.6 4.0 32 96-127 40-71 (122)
39 TIGR00824 EIIA-man PTS system, 62.3 11 0.00024 31.4 3.9 32 96-127 41-72 (116)
40 PLN02847 triacylglycerol lipas 50.1 21 0.00046 38.2 4.3 63 85-151 223-287 (633)
41 TIGR02364 dha_pts dihydroxyace 49.8 15 0.00033 31.1 2.7 53 97-154 42-96 (125)
42 cd00741 Lipase Lipase. Lipase 47.3 36 0.00078 29.2 4.9 57 87-147 2-58 (153)
43 PF01713 Smr: Smr domain; Int 46.2 80 0.0017 24.1 6.2 56 97-155 9-70 (83)
44 PF12210 Hrs_helical: Hepatocy 42.7 13 0.00029 29.7 1.2 53 358-415 27-88 (96)
45 PRK09461 ansA cytoplasmic aspa 42.6 79 0.0017 31.5 7.0 95 91-192 63-157 (335)
46 PF00710 Asparaginase: Asparag 39.6 1E+02 0.0022 30.4 7.2 93 91-191 54-147 (313)
47 cd00519 Lipase_3 Lipase (class 37.3 42 0.00091 31.0 3.9 62 82-147 97-158 (229)
48 PRK13660 hypothetical protein; 37.3 1.6E+02 0.0035 26.7 7.5 110 95-222 27-136 (182)
49 PF03141 Methyltransf_29: Puta 36.9 68 0.0015 33.7 5.5 34 114-156 116-149 (506)
50 PF09370 TIM-br_sig_trns: TIM- 35.3 19 0.00041 34.6 1.2 32 98-137 2-33 (268)
51 cd00411 Asparaginase Asparagin 35.0 1.3E+02 0.0028 29.8 7.2 94 91-192 60-155 (323)
52 PRK15088 PTS system mannose-sp 32.0 54 0.0012 32.5 3.9 33 95-127 41-73 (322)
53 COG0572 Udk Uridine kinase [Nu 31.2 53 0.0011 30.7 3.4 27 118-145 9-35 (218)
54 PF02353 CMAS: Mycolic acid cy 28.3 73 0.0016 30.8 4.0 64 81-151 28-92 (273)
55 PF01764 Lipase_3: Lipase (cla 27.5 57 0.0012 27.2 2.8 56 85-144 35-91 (140)
56 PF02879 PGM_PMM_II: Phosphogl 27.0 55 0.0012 26.2 2.5 27 114-140 20-46 (104)
57 PF03283 PAE: Pectinacetyleste 25.7 1.5E+02 0.0033 29.9 5.9 50 88-144 132-183 (361)
58 TIGR01732 tiny_TM_bacill conse 25.4 48 0.001 19.9 1.3 13 123-135 1-13 (26)
59 TIGR00519 asnASE_I L-asparagin 25.0 2E+02 0.0042 28.8 6.5 96 91-193 59-159 (336)
60 smart00870 Asparaginase Aspara 24.4 2.5E+02 0.0053 27.8 7.0 95 92-192 58-155 (323)
61 TIGR02153 gatD_arch glutamyl-t 24.2 2.6E+02 0.0056 28.8 7.2 91 91-188 120-211 (404)
62 PF08259 Periviscerokin: Periv 23.8 35 0.00077 16.1 0.4 8 238-245 3-10 (11)
63 KOG2369 Lecithin:cholesterol a 22.2 78 0.0017 32.9 3.0 56 79-140 146-205 (473)
64 COG1528 Ftn Ferritin-like prot 21.9 46 0.001 29.6 1.2 50 362-417 94-145 (167)
65 PF13508 Acetyltransf_7: Acety 21.8 1.1E+02 0.0023 22.7 3.1 35 112-149 28-62 (79)
66 KOG3178 Hydroxyindole-O-methyl 21.8 89 0.0019 31.2 3.2 40 106-150 168-207 (342)
67 PTZ00489 glutamate 5-kinase; P 21.7 4E+02 0.0086 25.6 7.7 49 138-188 87-135 (264)
68 COG4474 Uncharacterized protei 21.6 2.5E+02 0.0054 25.2 5.6 68 85-157 13-82 (180)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=3.5e-126 Score=899.80 Aligned_cols=424 Identities=61% Similarity=1.057 Sum_probs=406.4
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCC-----------------CCcccceeeecCCCCccccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD-----------------KTHVPRAVFVDLEPTVIDEVRTGT 63 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~-----------------~~~~pR~ilvD~e~~~i~~i~~~~ 63 (431)
|||||+||+||||||||.+||+++|+||||.++|.+... .+|+||||+||+||++|+.++.++
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~ 80 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGP 80 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCc
Confidence 999999999999999999999999999999999986532 239999999999999999999999
Q ss_pred cccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhC
Q 014077 64 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 143 (431)
Q Consensus 64 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 143 (431)
++.+|+|++++.+++|+|||||+|+|+.|+++.++++|+||+++|.||.||||+++||+|||||||+|+.|+|.|++|||
T Consensus 81 y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eyp 160 (443)
T COG5023 81 YGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYP 160 (443)
T ss_pred cccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccccc
Q 014077 144 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 223 (431)
Q Consensus 144 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 223 (431)
||.+.+|+|+|.++.++++|||||++|+++.|.++||+++++||++|+++|.+.+++++|+|.++|++||++|+++|+++
T Consensus 161 kK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtsl 240 (443)
T COG5023 161 KKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSL 240 (443)
T ss_pred hhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhhee
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeeccccc
Q 014077 224 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 303 (431)
Q Consensus 224 r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~ 303 (431)
||||++|.||++|.+||+|+|++||+.++|+|++...+..+++.++.++++++|+|+|+|++|+|+.++|++++.++||+
T Consensus 241 RfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~rG~ 320 (443)
T COG5023 241 RFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFRGD 320 (443)
T ss_pred ecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhccc
Q 014077 304 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 383 (431)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~k 383 (431)
..+++|++++.+++.|++.+|++|.|++|++++|+.+|.. ..+.+.++++|+|+|+|...|+++.+||++||+||
T Consensus 321 v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~kr 395 (443)
T COG5023 321 VDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKR 395 (443)
T ss_pred CCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhh
Confidence 9999999999999999999999999999999999998843 23447899999999999999999999999999999
Q ss_pred cceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCCCCCcCCCC
Q 014077 384 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEEDYGE 429 (431)
Q Consensus 384 Aflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~ 429 (431)
||||||.++||||+||.||++++++|.++|++++++.-++++.++|
T Consensus 396 AFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~~~~ 441 (443)
T COG5023 396 AFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEE 441 (443)
T ss_pred HHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhhhhc
Confidence 9999999999999999999999999999999998775555432333
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.6e-110 Score=851.86 Aligned_cols=430 Identities=98% Similarity=1.489 Sum_probs=406.8
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCC-------------------CCCcccceeeecCCCCccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPS-------------------DKTHVPRAVFVDLEPTVIDEVRT 61 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~-------------------~~~~~pR~ilvD~e~~~i~~i~~ 61 (431)
|||||+||+||||||||.+||+++++||+++++|.... +..|+||||+||+||++|++++.
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT 80 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhcc
Confidence 99999999999999999999999999999988774310 22499999999999999999999
Q ss_pred cccccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhh
Q 014077 62 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 141 (431)
Q Consensus 62 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 141 (431)
++++++|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus 81 ~~~~~lf~~~~~i~~~~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred CccccccCccceeccCCCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccc
Q 014077 142 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 221 (431)
Q Consensus 142 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 221 (431)
||++.+.+++|+|+...+++++++||++|++++|.+++|+++++||++|.++|.+.++++.|+|+++|++||++|+++|+
T Consensus 161 y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~ 240 (450)
T PLN00221 161 YGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240 (450)
T ss_pred cccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhcccccc
Confidence 99999999999999767789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 014077 222 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 301 (431)
Q Consensus 222 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~R 301 (431)
++||||.++.|++++++||||||++||++++++|+++.....+.+++|.++++++|++.++++.++|+.++||++++++|
T Consensus 241 s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~kyla~~~~~R 320 (450)
T PLN00221 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYR 320 (450)
T ss_pred cccccccccCCHHHHHHhcCCCCCceeeccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchHHHHHHHHc
Confidence 99999999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhc
Q 014077 302 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 381 (431)
Q Consensus 302 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 381 (431)
|+..+.++.+++.+++.+++..|++|+|+++++++|.++|...++..+.+.+.++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~ 400 (450)
T PLN00221 321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400 (450)
T ss_pred CCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888999999999999999999886555555556688999999999999999999999999999
Q ss_pred cccceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCCCCCcCCCCC
Q 014077 382 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEEDYGEE 430 (431)
Q Consensus 382 ~kAflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~ 430 (431)
||||||||+++||||+||.||+++|++|+++|+++..+.++++-||+||
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~~~~~~~~ 449 (450)
T PLN00221 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEGDEGEE 449 (450)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 9999999999999999999999999999999999988888877777765
No 3
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.8e-108 Score=838.96 Aligned_cols=423 Identities=95% Similarity=1.470 Sum_probs=400.0
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCC-------------------CCCcccceeeecCCCCccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPS-------------------DKTHVPRAVFVDLEPTVIDEVRT 61 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~-------------------~~~~~pR~ilvD~e~~~i~~i~~ 61 (431)
|||||+||+||||||||.+||+++++||+++++|.+.. +..|+||||+||+||++|++++.
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~ 80 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRT 80 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhccc
Confidence 99999999999999999999999999999988774311 12499999999999999999999
Q ss_pred cccccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhh
Q 014077 62 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 141 (431)
Q Consensus 62 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 141 (431)
++++++|+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 81 ~~~~~l~~~~~~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~ 160 (448)
T PTZ00335 81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVD 160 (448)
T ss_pred CccccccCchheeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccc
Q 014077 142 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 221 (431)
Q Consensus 142 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 221 (431)
||++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+
T Consensus 161 yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~ 240 (448)
T PTZ00335 161 YGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTA 240 (448)
T ss_pred ccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhccccc
Confidence 99999999999999766799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 014077 222 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 301 (431)
Q Consensus 222 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~R 301 (431)
++||||.++.|++++++||||||++||++++++|+++.....++.++|.++++++|++.++++.|+|+.++||++++++|
T Consensus 241 ~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ls~~~~~R 320 (448)
T PTZ00335 241 SLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACCLMYR 320 (448)
T ss_pred ccccccccCCCHHHHhccccCCCCceecccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccchHHHHHHHc
Confidence 99999999999999999999999999999999999987777788999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhc
Q 014077 302 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 381 (431)
Q Consensus 302 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 381 (431)
|+..+.++.+.+.+++.+++..|++|+|+++++++|.++|...++..+.+.+.++++++|+|+|..+|++++++|++||+
T Consensus 321 G~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~ 400 (448)
T PTZ00335 321 GDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYA 400 (448)
T ss_pred CCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988889999999999999999999887555555555688999999999999999999999999999
Q ss_pred cccceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCCCC
Q 014077 382 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEG 423 (431)
Q Consensus 382 ~kAflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~ 423 (431)
||||||||+++||||+||.||+++|++|+++|+++..+.++|
T Consensus 401 rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~~~~ 442 (448)
T PTZ00335 401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESADE 442 (448)
T ss_pred hcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 999999999999999999999999999999999997555544
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=5e-105 Score=814.68 Aligned_cols=412 Identities=44% Similarity=0.840 Sum_probs=392.1
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCC-----------------CCCcccceeeecCCCCccccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPS-----------------DKTHVPRAVFVDLEPTVIDEVRTGT 63 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~-----------------~~~~~pR~ilvD~e~~~i~~i~~~~ 63 (431)
|||||+||+||||||||.+||+++++||++++++.+.. +..|+||+|+||+||++|+.++.++
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 80 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGP 80 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccc
Confidence 99999999999999999999999999999987764311 2248999999999999999999888
Q ss_pred cccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhC
Q 014077 64 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 143 (431)
Q Consensus 64 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 143 (431)
++.+|+|++++.+++|+|||||+||+..|++..++++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||
T Consensus 81 ~~~lf~~~~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~ 160 (445)
T PTZ00010 81 YGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYP 160 (445)
T ss_pred hhhhcCccceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccccc
Q 014077 144 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 223 (431)
Q Consensus 144 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 223 (431)
++.+.+++|+|+...+++++++||++|++++|.+++|++++|||++|+++|.+.++++.|+|.++|++||++|+++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~ 240 (445)
T PTZ00010 161 DRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCL 240 (445)
T ss_pred ccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhccccccce
Confidence 99999999999977678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeeccccc
Q 014077 224 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 303 (431)
Q Consensus 224 r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~ 303 (431)
||||.+|.|++++++||||||++||++++++|+.+..+..++.+++.++++++|+++++++.++|+.++|+++++++||+
T Consensus 241 Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la~~~~~RG~ 320 (445)
T PTZ00010 241 RFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGR 320 (445)
T ss_pred ecCCcccccHHHHHHHHhcCCCceeeecccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHHHHHHHcCC
Confidence 99999999999999999999999999999999998777778899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhccc
Q 014077 304 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 383 (431)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~k 383 (431)
..++++.+.+..++.+++..|++|+|++|++++|.++|... ++++++++|+|+|..+|+++.++|++||+||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNstsi~~~~~~i~~~f~~m~~rr 392 (445)
T PTZ00010 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGL--------KMSVTFIGNSTAIQEMFRRVGEQFTAMFRRK 392 (445)
T ss_pred CCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCc--------cceEEEecCCcHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998888888999999999999999998887532 6889999999999999999999999999999
Q ss_pred cceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCC
Q 014077 384 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 420 (431)
Q Consensus 384 Aflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~ 420 (431)
||||||+++||||+||.||+++|++|+++|+++....
T Consensus 393 Aflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred chhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999987554
No 5
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=5.9e-104 Score=808.68 Aligned_cols=411 Identities=43% Similarity=0.843 Sum_probs=390.0
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCC-----------------CCCcccceeeecCCCCccccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPS-----------------DKTHVPRAVFVDLEPTVIDEVRTGT 63 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~-----------------~~~~~pR~ilvD~e~~~i~~i~~~~ 63 (431)
|||||+||+||||||||.+||+++++||++++++.+.. +..|+||+|+||+||++|++++.++
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 80 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP 80 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCc
Confidence 99999999999999999999999999999977654311 2248999999999999999999998
Q ss_pred cccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhC
Q 014077 64 YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYG 143 (431)
Q Consensus 64 ~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp 143 (431)
++.+|+|++++.+++|+|||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|++.|+|+||
T Consensus 81 ~~~~~~~~~~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~ 160 (447)
T PLN00220 81 YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP 160 (447)
T ss_pred cccccCccceEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccccc
Q 014077 144 KKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASL 223 (431)
Q Consensus 144 ~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~ 223 (431)
++.+++++|+|++..+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||+.++++|+++
T Consensus 161 ~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~sl 240 (447)
T PLN00220 161 DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL 240 (447)
T ss_pred ccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhh
Confidence 99999999999977789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeeccccc
Q 014077 224 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGD 303 (431)
Q Consensus 224 r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~ 303 (431)
||||.++.++++++++|||||++||+.++++|+.+.....++.+++.+++++++++++++++++|..++|+++++++||+
T Consensus 241 RFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la~~~~~RG~ 320 (447)
T PLN00220 241 RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGK 320 (447)
T ss_pred ccCCcCCccHHHHHHHhCCccceeEeecccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHHHHHHHcCC
Confidence 99999999999999999999999999999999988776678889999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhccc
Q 014077 304 VVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 383 (431)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~k 383 (431)
..+.++.+.+..++.+++..|++|+|++|++.+|.++|... +.++++++|+|+|..+|++++++|++||+||
T Consensus 321 ~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rk 392 (447)
T PLN00220 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392 (447)
T ss_pred CCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCc--------ceeeEEecCchHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998888888899999999999999999887532 6789999999999999999999999999999
Q ss_pred cceeccccCCCChhhHHHHHHHHHHHHHHHHHHccC
Q 014077 384 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 419 (431)
Q Consensus 384 Aflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~ 419 (431)
||||||+++||||+||.||+++|++|+++|+++...
T Consensus 393 Aflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred cchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999887643
No 6
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=9.8e-104 Score=803.58 Aligned_cols=415 Identities=88% Similarity=1.416 Sum_probs=393.3
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCC-------------------CCCcccceeeecCCCCcccccccc
Q 014077 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPS-------------------DKTHVPRAVFVDLEPTVIDEVRTG 62 (431)
Q Consensus 2 ~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~-------------------~~~~~pR~ilvD~e~~~i~~i~~~ 62 (431)
||||+||+||||||||.+||+++++||+++++|.+.. +..|+||||+||+||++|++++.+
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~ 80 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTG 80 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccC
Confidence 7999999999999999999999999999987764211 224999999999999999999988
Q ss_pred ccccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhh
Q 014077 63 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey 142 (431)
+++.+|++++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccc
Q 014077 143 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 222 (431)
Q Consensus 143 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 222 (431)
|++++++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||++|+++|++
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~ 240 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhccccc
Confidence 99999999999997667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeecccc
Q 014077 223 LRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRG 302 (431)
Q Consensus 223 ~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG 302 (431)
+||||.++.|+++++++|||||++||++++++|+++.....++.++|.+|++++|++.++|+.|+|+.++||++++++||
T Consensus 241 ~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~la~~~~~RG 320 (434)
T cd02186 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRG 320 (434)
T ss_pred eecCCccCCCHHHHHhhccccccceeeccccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHHHHHHHHcC
Confidence 99999999999999999999999999999999999877777888999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhcc
Q 014077 303 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAK 382 (431)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~ 382 (431)
+..++++.+++.+++.+++..|++|+|+++++++|+++|...++..+.+.++++++++|+|+|..+|++++++|++||+|
T Consensus 321 ~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~r 400 (434)
T cd02186 321 DVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSK 400 (434)
T ss_pred CCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhh
Confidence 99999999999888888889999999999999999998876555555566889999999999999999999999999999
Q ss_pred ccceeccccCCCChhhHHHHHHHHHHHHHHHHHH
Q 014077 383 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 416 (431)
Q Consensus 383 kAflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 416 (431)
|||||||+++||||+||.||+++|++|+++|+++
T Consensus 401 kAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 401 RAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred cchhhhhcCcCCchHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999863
No 7
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.8e-102 Score=795.41 Aligned_cols=409 Identities=32% Similarity=0.597 Sum_probs=382.0
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcC-CCCCCCC--------C-------CCC--CcccceeeecCCCCcccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHG-IQPDGQM--------P-------SDK--THVPRAVFVDLEPTVIDEVRTG 62 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~-~~~~~~~--------~-------~~~--~~~pR~ilvD~e~~~i~~i~~~ 62 (431)
|||||+||+||||||||.+||+++++||+ +++++.+ . .+. .|+||||+||+||++|++++.+
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~ 80 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKS 80 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcccccccceecccccccccCCCccccCcccccCCCccHHHHhhcC
Confidence 99999999999999999999999999999 6665431 1 012 3999999999999999999998
Q ss_pred ccccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhh
Q 014077 63 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 142 (431)
Q Consensus 63 ~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey 142 (431)
+++++|+|++++.+++|+||||+.||+..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~~~~f~~~~~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y 160 (465)
T PTZ00387 81 PLGDLFDENFFVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEF 160 (465)
T ss_pred CcccccCcccccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCC--------------------
Q 014077 143 GKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIER-------------------- 202 (431)
Q Consensus 143 p~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~-------------------- 202 (431)
|++.+++++|+|+. .+++++++||++|+|++|.+++|++++++|++|.++|.+.+++..
T Consensus 161 ~~~~~~~~~V~P~~-~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (465)
T PTZ00387 161 PHVFRFCPVVFPSA-VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVA 239 (465)
T ss_pred ccCceeeeEecCCC-CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccccccccccccccc
Confidence 99999999999985 578899999999999999999999999999999999988776653
Q ss_pred -------CCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHH
Q 014077 203 -------PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNS 275 (431)
Q Consensus 203 -------~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~ 275 (431)
++|+++|++||++|+++|+++||||.+|.|++++.+||||||++||++++++|+.+.....+...+|.+|++.
T Consensus 240 ~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~~~~~s~~~l~~~ 319 (465)
T PTZ00387 240 KPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVGPRRLDQMFKD 319 (465)
T ss_pred cccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcccccCCHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999998877777888999999999
Q ss_pred hcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccce
Q 014077 276 AFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 355 (431)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s 355 (431)
+|++.++|+.++|+.++||++++++||+..+.++.+.+.+++. ...|++|+|+++++++|.++|... +.+
T Consensus 320 l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~--~~~f~~W~p~~~~~~~~~~~~~~~--------~~s 389 (465)
T PTZ00387 320 CLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKE--QLNMIYWNEDGFKTGLCNVSPLGQ--------PYS 389 (465)
T ss_pred HhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhc--cccccccCCCceEEEeeccCCCCC--------cee
Confidence 9999999999999999999999999999889999988887764 488999999999999999887543 678
Q ss_pred EEEeccCcchHHHHHHHHHHHHHHhccccceeccccCCCChhhHHHHHHHHHHHHHHHHHHccCCC
Q 014077 356 VCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA 421 (431)
Q Consensus 356 ~~~l~N~t~i~~~l~~l~~~~~~~~~~kAflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~ 421 (431)
+++++|+|+|..+|++++++|++||+||||||||+ +|||++||.||+++|++|+++|++++....
T Consensus 390 ~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~~~ 454 (465)
T PTZ00387 390 LLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTAEP 454 (465)
T ss_pred EEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999 799999999999999999999999974443
No 8
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=2.1e-102 Score=794.66 Aligned_cols=414 Identities=33% Similarity=0.607 Sum_probs=384.0
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCC-----------------CCCCcccceeeecCCCCccccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-----------------SDKTHVPRAVFVDLEPTVIDEVRTGT 63 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~-----------------~~~~~~pR~ilvD~e~~~i~~i~~~~ 63 (431)
|||||+||+||||||||.+||+++++||+++++|.+. .+..|+||||+||+||++|++++.++
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~ 81 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSE 81 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCc
Confidence 6999999999999999999999999999998776431 12349999999999999999999888
Q ss_pred cccccCccccccCcc--cccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhh
Q 014077 64 YRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 141 (431)
Q Consensus 64 ~~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 141 (431)
++++|+|++++.+++ |+|||||+||+ .|++..++++|+||+++|.||++|||+++||+|||||||+|++|+|.|+|+
T Consensus 82 ~~~lf~~~~~~~~~~~~gagnn~a~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 82 YRNLYNHENIFVSDHGGGAGNNWASGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccccCccceeecccCCCcccchHHhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 889999999999986 69999999965 799999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCC-CCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcc
Q 014077 142 YGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 220 (431)
Q Consensus 142 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 220 (431)
||++.+++++|+|+.. .+++++++||++|+|++|.+++|+++++||++|+++|.+.++++.++|+++|++||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T 240 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSAST 240 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcc
Confidence 9999999999999863 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccchhhhhccCCCCCcccccccccccccccc-cccccccCHHHHHHHhcCCCCCCcccCCCC-----Ccee
Q 014077 221 ASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVAEITNSAFEPSSMMAKCDPRH-----GKYM 294 (431)
Q Consensus 221 ~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~l 294 (431)
+++||||.+|.|++++++||||||++||++++++|+.... ...++..++.+++++++++++++..|+|+. ++||
T Consensus 241 ~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~l 320 (454)
T PLN00222 241 TTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYI 320 (454)
T ss_pred cccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccCceeecCCccccccccchH
Confidence 9999999999999999999999999999999999997652 345677889999999999999999998877 8999
Q ss_pred eeeecccccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHH
Q 014077 295 ACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDH 374 (431)
Q Consensus 295 s~~~i~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~ 374 (431)
|+++++||+..+.++.+.+.+++.+++..|++|+|+++++++|.++|...+ +.+.++++|+|+|+|..+|+++.+
T Consensus 321 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~-----~~~~s~~~lsNst~I~~~f~~i~~ 395 (454)
T PLN00222 321 SILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQT-----AHRVSGLMLANHTSIRHLFSKCLS 395 (454)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCC-----CCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999999999998888999999999999999998875321 126789999999999999999999
Q ss_pred HHHHHhccccceeccccCCCC----hhhHHHHHHHHHHHHHHHHHHccCC
Q 014077 375 KFDLMYAKRAFVHWYVGEGME----EGEFSEAREDLAALEKDYEEVGAES 420 (431)
Q Consensus 375 ~~~~~~~~kAflh~Y~~~Gme----e~eF~Ea~~~l~~l~~~Y~~~~~~~ 420 (431)
+|++||+||||||||+++||+ ++||.||+++|++|+++|+++...+
T Consensus 396 ~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~ 445 (454)
T PLN00222 396 QYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPD 445 (454)
T ss_pred HHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999993 8999999999999999999886333
No 9
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.8e-102 Score=791.21 Aligned_cols=406 Identities=37% Similarity=0.684 Sum_probs=382.3
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCC-----------------CCCcccceeeecCCCCcccccccccc
Q 014077 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPS-----------------DKTHVPRAVFVDLEPTVIDEVRTGTY 64 (431)
Q Consensus 2 ~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~-----------------~~~~~pR~ilvD~e~~~i~~i~~~~~ 64 (431)
||||+||+||||||||.+||+++++||+++++|.... +..|+||||+||+||++|++++.+++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~ 80 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEY 80 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCcc
Confidence 7999999999999999999999999999987764321 23499999999999999999999888
Q ss_pred ccccCccccccCcc--cccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhh
Q 014077 65 RQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDY 142 (431)
Q Consensus 65 ~~~~~~~~~~~~~~--g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~dey 142 (431)
+++|+|++++.+++ |+|||||+||+ .|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+|
T Consensus 81 ~~lf~~~~~~~~~~~~gagnnwa~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y 159 (431)
T cd02188 81 RNLYNPENIFLSKHGGGAGNNWASGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRY 159 (431)
T ss_pred ccccCccceEeeccCCCccccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHc
Confidence 89999999999987 99999999965 6999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEecCCCC-CCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccc
Q 014077 143 GKKSKLGFTVYPSPQV-STSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 221 (431)
Q Consensus 143 p~~~i~~~~v~P~~~~-~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 221 (431)
|++.+++++|+|+... +++++++||++|+|++|.+++|+++++||++|.++|++.+++..++|+++|++||++|+++|+
T Consensus 160 ~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~ 239 (431)
T cd02188 160 PKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTT 239 (431)
T ss_pred CcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccc
Confidence 9999999999998754 588999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccc-cccccccCHHHHHHHhcCCCCCCcccCC-CCCceeeeeec
Q 014077 222 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAE-KAYHEQLSVAEITNSAFEPSSMMAKCDP-RHGKYMACCLM 299 (431)
Q Consensus 222 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~ls~~~i 299 (431)
++||||.+|.|++++++||||||++||++++++|+.+.. ...++.+++.++++.++++.++|+.|+| +.++|+|++++
T Consensus 240 ~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k~la~~~~ 319 (431)
T cd02188 240 TLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGCYISILNI 319 (431)
T ss_pred ceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccchhHHHHHH
Confidence 999999999999999999999999999999999999877 5778889999999999999999999999 88999999999
Q ss_pred ccccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHH
Q 014077 300 YRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 379 (431)
Q Consensus 300 ~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~ 379 (431)
+||+..+.++.+.+.+++.+.+..|++|+|+++++++|.++|...++ .+.++++++|+|+|..+|+++.++|++|
T Consensus 320 ~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~-----~~~s~~~lsNst~I~~~f~~i~~kf~~m 394 (431)
T cd02188 320 IQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTA-----HRVSGLMLANHTSIASLFERILKQFDKL 394 (431)
T ss_pred HcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCC-----CceeEEEecCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888899999999999999888754321 2578999999999999999999999999
Q ss_pred hccccceeccccCCCC---hhhHHHHHHHHHHHHHHH
Q 014077 380 YAKRAFVHWYVGEGME---EGEFSEAREDLAALEKDY 413 (431)
Q Consensus 380 ~~~kAflh~Y~~~Gme---e~eF~Ea~~~l~~l~~~Y 413 (431)
|+||||||||+++||| |+||.||+++|++|+++|
T Consensus 395 f~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 395 RKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 9999999999999999 999999999999999998
No 10
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=4.3e-102 Score=790.24 Aligned_cols=407 Identities=43% Similarity=0.849 Sum_probs=387.0
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCC-----------------CCCCcccceeeecCCCCcccccccccc
Q 014077 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-----------------SDKTHVPRAVFVDLEPTVIDEVRTGTY 64 (431)
Q Consensus 2 ~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~-----------------~~~~~~pR~ilvD~e~~~i~~i~~~~~ 64 (431)
||||+||+||||||||.+||+++++||++++++.+. .+..|+||||+||+||++|++++.+++
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~ 80 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPF 80 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCcc
Confidence 799999999999999999999999999998776431 123489999999999999999988888
Q ss_pred ccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCC
Q 014077 65 RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 144 (431)
Q Consensus 65 ~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~ 144 (431)
+.+|+|++++.+++|+|||||.||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||+
T Consensus 81 ~~l~~~~~~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~ 160 (425)
T cd02187 81 GQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPD 160 (425)
T ss_pred cceecCcceeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccc
Q 014077 145 KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLR 224 (431)
Q Consensus 145 ~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 224 (431)
+.+++++|+|+...+++++++||++|+|++|.+++|+++++||++|.++|.+.+++..++|+++|++||++|+++|+++|
T Consensus 161 ~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 161 RIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred cceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 99999999999866789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeecccccC
Q 014077 225 FDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDV 304 (431)
Q Consensus 225 ~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~ 304 (431)
|||.+|.|++++++||||||++||++++++|+++.....++.+++.++++++|++++++..++|+.++|+++++++||+.
T Consensus 241 fpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~ 320 (425)
T cd02187 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTAAAIFRGRV 320 (425)
T ss_pred cCCccccCHHHHHHhcCCCCCceecccccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHHHHHHcCCC
Confidence 99999999999999999999999999999999987777788899999999999999999989999999999999999999
Q ss_pred ChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhcccc
Q 014077 305 VPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRA 384 (431)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~kA 384 (431)
.+.++.+.+.+++.+.+..|++|+|+++++.+|.++|... +.++++++|+|+|..+|++++++|++||+|||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~--------~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkA 392 (425)
T cd02187 321 SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMSATFIGNSTAIQELFKRISEQFTAMFRRKA 392 (425)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCc--------ceeEEEecCCcHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999998888899999999999999998876532 68899999999999999999999999999999
Q ss_pred ceeccccCCCChhhHHHHHHHHHHHHHHHHHH
Q 014077 385 FVHWYVGEGMEEGEFSEAREDLAALEKDYEEV 416 (431)
Q Consensus 385 flh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~ 416 (431)
|||||+++||||+||.||+++|++|+++|+++
T Consensus 393 flh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 393 FLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred chhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999976
No 11
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=2.5e-98 Score=751.51 Aligned_cols=379 Identities=36% Similarity=0.706 Sum_probs=362.6
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCccccc
Q 014077 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAA 81 (431)
Q Consensus 2 ~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~g 81 (431)
||||+||+||||||||.+||+++++|| |+||+|+||+||++|++++.++++++|+|++++.+++|+|
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh-------------~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~gaG 67 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH-------------LKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDVSGAG 67 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh-------------cCCcceeccCChhHHHHHhcCccccccCcccccccCCCCC
Confidence 799999999999999999999999998 6899999999999999999988889999999999999999
Q ss_pred CCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCc
Q 014077 82 NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 161 (431)
Q Consensus 82 nn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~ 161 (431)
|||+.||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||++.+++++|+|+.. +++
T Consensus 68 nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~-~~~ 146 (379)
T cd02190 68 NNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSAD-DDV 146 (379)
T ss_pred CCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985 788
Q ss_pred cchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCC
Q 014077 162 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLV 241 (431)
Q Consensus 162 ~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~ 241 (431)
++++||++|+|++|.+++|+++++||++|. +|+++|++||++|+++|+++||||.+|.|++++.++||
T Consensus 147 ~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLv 214 (379)
T cd02190 147 ITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLV 214 (379)
T ss_pred eecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceeecccccccchhhhccccc
Confidence 999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred CCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCc
Q 014077 242 PYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRT 321 (431)
Q Consensus 242 p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~~~~ 321 (431)
|||++||++++++|+++.....++..++.++++.++++.++|+.++|+.++|+++++++||+..+.++.+.+.+++.+
T Consensus 215 P~P~l~fl~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~~~i~RG~~~~~ei~~~~~~l~~~-- 292 (379)
T cd02190 215 PFPRLHFLVSSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLACALLVRGNVSVSDLRRNIERLKPK-- 292 (379)
T ss_pred cCCCceecccccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHHHHHHcCCCCHHHHHHHHHHHhcc--
Confidence 999999999999999987767778899999999999999999999999999999999999999999998888877765
Q ss_pred cccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhccccceeccccCCCChhhHHH
Q 014077 322 IQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 401 (431)
Q Consensus 322 ~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~kAflh~Y~~~Gmee~eF~E 401 (431)
..|++|+|+++++++|.++|... ++++++++|+|+|..+|++++++|++||+||||||||+++||||+||.|
T Consensus 293 ~~fv~W~p~~~~~~~~~~~~~~~--------~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG~ee~ef~e 364 (379)
T cd02190 293 LKFVKWNQEGWKIGLCSVPPVGH--------SYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGMEQGDFTE 364 (379)
T ss_pred CcCcCcCCCcEEEeecccCCCCc--------ceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCCCcHHHHHH
Confidence 67999999999999998877532 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 014077 402 AREDLAALEKDYEEV 416 (431)
Q Consensus 402 a~~~l~~l~~~Y~~~ 416 (431)
|+++|++|+++|+++
T Consensus 365 a~~~l~~li~~Y~~l 379 (379)
T cd02190 365 ALESISNLIDEYDYL 379 (379)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999874
No 12
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=2.1e-97 Score=704.45 Aligned_cols=412 Identities=34% Similarity=0.636 Sum_probs=382.6
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCC-----------------CCcccceeeecCCCCccccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSD-----------------KTHVPRAVFVDLEPTVIDEVRTGT 63 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~-----------------~~~~pR~ilvD~e~~~i~~i~~~~ 63 (431)
||||||+|+||||||||.+||+++|.||++.++|..+.. ..|+|||||||+||++|+.+.+++
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~ 81 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSP 81 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccch
Confidence 589999999999999999999999999999998865432 239999999999999999999999
Q ss_pred cccccCccccccC--cccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhh
Q 014077 64 YRQLFHPEQLISG--KEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 141 (431)
Q Consensus 64 ~~~~~~~~~~~~~--~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 141 (431)
++++|+|+|++.. +.|+|||||.|| ..|++..|+|+|.|++++|.||+++||+++||++||||||+||.|+|.|+|+
T Consensus 82 ~s~l~n~eni~~s~~ggGAGNNWA~GY-~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~dr 160 (448)
T KOG1374|consen 82 YSGLYNPENIFLSDHGGGAGNNWASGY-SQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDR 160 (448)
T ss_pred hhcccCccceEEecCCCCccccccccc-ccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHh
Confidence 9999999999764 468999999998 5699999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCC-CCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcc
Q 014077 142 YGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 220 (431)
Q Consensus 142 yp~~~i~~~~v~P~~~-~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t 220 (431)
||||.+.+++|||... .++++|||||++|+|++|.+.+|+++++||.+|.++|.+.+.+++|+|+++|++||..|++.|
T Consensus 161 ypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st 240 (448)
T KOG1374|consen 161 YPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSAST 240 (448)
T ss_pred chhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999864 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCccchhhhhccCCCCCcccccccccccccccccccc--cccCHHHHHHHhcCCCCCCcccCC---CCCceee
Q 014077 221 ASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYH--EQLSVAEITNSAFEPSSMMAKCDP---RHGKYMA 295 (431)
Q Consensus 221 ~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~ls 295 (431)
.++|||++++.++..+...|+|+|++||+++++.|++....... +.-++.+.++.++.++++|+...+ .+..|++
T Consensus 241 ~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~s 320 (448)
T KOG1374|consen 241 TTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYIS 320 (448)
T ss_pred ccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHh
Confidence 99999999999999999999999999999999999998765544 667888999999999999987654 2346899
Q ss_pred eeecccccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHH
Q 014077 296 CCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHK 375 (431)
Q Consensus 296 ~~~i~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~ 375 (431)
...++-|...+..+...+.+++.++...|++|.|..+.+++....|..... ++.|..+|+|+|+|..+|++++.+
T Consensus 321 i~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~-----~~vSglml~N~t~i~~lfe~~~~q 395 (448)
T KOG1374|consen 321 ILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRA-----HRVSGLMLANSTSIVSLFERILGQ 395 (448)
T ss_pred HHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccc-----cceeeeeeccchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877764432 478999999999999999999999
Q ss_pred HHHHhccccceeccccCCCChh---hHHHHHHHHHHHHHHHHHHcc
Q 014077 376 FDLMYAKRAFVHWYVGEGMEEG---EFSEAREDLAALEKDYEEVGA 418 (431)
Q Consensus 376 ~~~~~~~kAflh~Y~~~Gmee~---eF~Ea~~~l~~l~~~Y~~~~~ 418 (431)
|++|++||||||+|.++||+++ ||.|+++.+++|+++|..+.+
T Consensus 396 ydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~ 441 (448)
T KOG1374|consen 396 YDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQ 441 (448)
T ss_pred HHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999888 999999999999999998753
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=5.9e-95 Score=741.42 Aligned_cols=399 Identities=26% Similarity=0.463 Sum_probs=364.2
Q ss_pred EEEEecCCchhHHHHHHHHHHHhhcCCCCCCCC-------------CCCCCcccceeeecCCCCcccccccccc--cccc
Q 014077 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQM-------------PSDKTHVPRAVFVDLEPTVIDEVRTGTY--RQLF 68 (431)
Q Consensus 4 ii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~-------------~~~~~~~pR~ilvD~e~~~i~~i~~~~~--~~~~ 68 (431)
||+||+||||||||.+||+++++||++++++.+ ..+..|+||+|+||+||++|++++.+.. +++|
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f 81 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKY 81 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCccccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCccccc
Confidence 899999999999999999999999999776531 1133599999999999999999988654 3689
Q ss_pred CccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCccee
Q 014077 69 HPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKL 148 (431)
Q Consensus 69 ~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~ 148 (431)
+|++++.+++|+|||||+||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++|+|.|+|+||++.++
T Consensus 82 ~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~ 161 (446)
T cd02189 82 DKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLL 161 (446)
T ss_pred CchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccccccc-C-
Q 014077 149 GFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF-D- 226 (431)
Q Consensus 149 ~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~-~- 226 (431)
+++|+|+. .+++++++||++|+|++|.+++|+++++||++|.++|.+.++++.++|+++|++||+.|+++|+|.|+ +
T Consensus 162 ~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r~~~~ 240 (446)
T cd02189 162 NIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDSTG 240 (446)
T ss_pred eeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhhccCc
Confidence 99999976 57899999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred ------CCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhc---CCCCCCcc------------
Q 014077 227 ------GALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAF---EPSSMMAK------------ 285 (431)
Q Consensus 227 ------~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~------------ 285 (431)
|..+.++++++++|||+|++||++++++|+++.....++.++|.++++.++ .+.+++..
T Consensus 241 ~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~~~~~ 320 (446)
T cd02189 241 SNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRPEGSA 320 (446)
T ss_pred ccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccccccc
Confidence 336899999999999999999999999999987777788899999999865 56666554
Q ss_pred -------cCCCCCceeeeeecccccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEE
Q 014077 286 -------CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCM 358 (431)
Q Consensus 286 -------~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 358 (431)
++++.++|+++++++||+....++...+ ++...|++|+|++++++++.++|... +.++++++
T Consensus 321 ~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~-----~~~~~f~~W~p~~~~~~~~~~~~~~~------~~~~s~~~ 389 (446)
T cd02189 321 ASLLSGNKSTHFNKSLANLLILRGKDVTSADERKF-----RDPLLYVNWSPSPVRFSISSHKRSFS------KYEKSVTL 389 (446)
T ss_pred ccccccccCCcccceeeeeeeeeCCCchHHHHHHH-----hccCcCCCcCCCCEeeeecCCCCCcC------CcceeEEE
Confidence 4567899999999999988777776433 35688999999999999998876421 23789999
Q ss_pred eccCcchHHHHHHHHHHHHHHhccccceeccccCCCChhhHHHHHHHHHHHHHHHH
Q 014077 359 ISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYE 414 (431)
Q Consensus 359 l~N~t~i~~~l~~l~~~~~~~~~~kAflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~ 414 (431)
++|+|+|..+|++++++|++||+||||||||+++||||+||.||+++|++|+++|+
T Consensus 390 l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 390 VSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred EeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999996
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=1.7e-90 Score=699.30 Aligned_cols=381 Identities=49% Similarity=0.891 Sum_probs=362.4
Q ss_pred cEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccC
Q 014077 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 82 (431)
Q Consensus 3 eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gn 82 (431)
|||+||+||||||||.+||+++ |+||+||++|+.++.++.+.+|++++++.+++|+||
T Consensus 1 eii~i~vGq~G~qig~~~w~~~----------------------i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gn 58 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL----------------------ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGN 58 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH----------------------HcccCCcchhhhhhcccccccCCcccEEeccccccc
Confidence 8999999999999999999976 999999999999999888889999999999999999
Q ss_pred CccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCcc
Q 014077 83 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSV 162 (431)
Q Consensus 83 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~ 162 (431)
||++||+..|+++.|+++|+||+++|+||++|||+++||++||||||+|++++|.|+|+||++.+++++|+|+...++++
T Consensus 59 n~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~ 138 (382)
T cd06059 59 NWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNV 138 (382)
T ss_pred cccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765689
Q ss_pred chhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCCC
Q 014077 163 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVP 242 (431)
Q Consensus 163 ~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p 242 (431)
+++||++|++.+|.+++|++++++|++|.++|.+.+.+..++|+++|++||++|+++|.++|+||.+|.|+++++++|+|
T Consensus 139 v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP 218 (382)
T cd06059 139 VEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVP 218 (382)
T ss_pred ccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhhcCC
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCcc
Q 014077 243 YPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTI 322 (431)
Q Consensus 243 ~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~~~~~ 322 (431)
||++||++++++|+++.....+...++.+++++++++.+++..++++.++|+++++++||+..+.++.+.+.+++.+...
T Consensus 219 ~p~~~fl~~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~ 298 (382)
T cd06059 219 FPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAALIFRGDVFQSEIQEAINKLKNKLNI 298 (382)
T ss_pred CCCceeccccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999987766778889999999999999999999999999999999999999999999888887766544
Q ss_pred ccccCCCCCCceeecCCCCc-cCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhccccceeccccCCCChhhHHH
Q 014077 323 QFVDWCPTGFKCGINYQPPT-VVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 401 (431)
Q Consensus 323 ~f~~w~p~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~kAflh~Y~~~Gmee~eF~E 401 (431)
. +|+|+++++++|.++|. . ..+++++++|+|+|..+|++++++|++||+||||||||+++||||+||.|
T Consensus 299 ~--~w~p~~~~~~~~~~~~~~~--------~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G~ee~ef~e 368 (382)
T cd06059 299 Q--SWIPDGFKVSNCKKPPRAE--------LGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMDEMEFTE 368 (382)
T ss_pred c--cCCCCcEEEEecCCCCCcC--------cceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcCCchHHHHH
Confidence 4 89999999999998875 2 26889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 014077 402 AREDLAALEKDYEE 415 (431)
Q Consensus 402 a~~~l~~l~~~Y~~ 415 (431)
|+++|++++++|++
T Consensus 369 a~~~l~~li~~Y~~ 382 (382)
T cd06059 369 AESSLEDLIQSYQE 382 (382)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999974
No 15
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=5.8e-79 Score=577.14 Aligned_cols=387 Identities=86% Similarity=1.384 Sum_probs=369.1
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCC-------------------CcccceeeecCCCCccccccc
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDK-------------------THVPRAVFVDLEPTVIDEVRT 61 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~-------------------~~~pR~ilvD~e~~~i~~i~~ 61 (431)
|||||.|++||+|.|||..-|+++|.||++.+++..+.+. .++||+++||+||. |++++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrt 79 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRT 79 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeecccccccccceeEEEeccCc-cchhcc
Confidence 9999999999999999999999999999999988765421 28899999999999 999999
Q ss_pred cccccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhh
Q 014077 62 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 141 (431)
Q Consensus 62 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~de 141 (431)
++|+.+|+|++++.|++.+.||+|+|+|+.|+|.++..+++||+.++.|..+|||.++||.|||||||+++.++|.+..+
T Consensus 80 G~y~~lfHPeqlitGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~ 159 (407)
T KOG1376|consen 80 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVD 159 (407)
T ss_pred cchhhccCchhccCcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccc
Q 014077 142 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 221 (431)
Q Consensus 142 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 221 (431)
|+||..+.++++|.+..++.+++|||++|+.....+++|+.+++||++++.+|++.+.++.|+|.++|++|++.++++|+
T Consensus 160 ~GKkskl~fsiypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsita 239 (407)
T KOG1376|consen 160 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITA 239 (407)
T ss_pred hhhccccccccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeeccc
Q 014077 222 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR 301 (431)
Q Consensus 222 ~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~R 301 (431)
++||.|.+|.||.+|.+||||+| + ++|+.+..+..++++++.+++...|++.++|++|||+.++|+++++++|
T Consensus 240 Slrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~a~he~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cllyr 312 (407)
T KOG1376|consen 240 SLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 312 (407)
T ss_pred ccccCCcccccHHHHHhhCCCCc----c---cccchhhcccchhhhhHHhhccccccccccccccCCccchHHHHHHhcc
Confidence 99999999999999999999999 2 8999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHHHHHHHhc
Q 014077 302 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA 381 (431)
Q Consensus 302 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~ 381 (431)
|+..|+++..++..+|.+.+..|++- ..++..+++..+..++++|+|+|++...++..+|+.||.
T Consensus 313 gdvvP~~v~~A~a~ikt~rt~qfvd~---------------~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmya 377 (407)
T KOG1376|consen 313 GDVVPKDVNAAIATIKTKRTIQFVDT---------------VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA 377 (407)
T ss_pred CCcCcccchHHHHhhhhcccccccee---------------eccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhc
Confidence 99999999999999999999988861 123445667789999999999999999999999999999
Q ss_pred cccceeccccCCCChhhHHHHHHHHHHHH
Q 014077 382 KRAFVHWYVGEGMEEGEFSEAREDLAALE 410 (431)
Q Consensus 382 ~kAflh~Y~~~Gmee~eF~Ea~~~l~~l~ 410 (431)
||||+|||..+||||.||.||++.|..|.
T Consensus 378 krafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 378 KRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred chheeeeccCCCccccchhhhhhhHHhhc
Confidence 99999999999999999999999887663
No 16
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=6e-70 Score=518.45 Aligned_cols=329 Identities=41% Similarity=0.828 Sum_probs=315.5
Q ss_pred CcccceeeecCCCCccccccccccccccCccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEe
Q 014077 41 THVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN 120 (431)
Q Consensus 41 ~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~ 120 (431)
.|+||+|+||+||.+++++..+++..+|+|++ +++| .|+|..|.+..|. .||++||||+.|
T Consensus 22 ~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~sg------~ghy~~ga~~~ds----------~~dclqgfql~h 82 (369)
T KOG1375|consen 22 KYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQSG------KGHYTEGAELVDS----------SCDCLQGFQLTH 82 (369)
T ss_pred cccchhheeeccCccccccccCccceeccCcC---CccC------ccceeeeeeehhc----------ccchhhcceeee
Confidence 59999999999999999999999999999999 4444 8889999877666 899999999999
Q ss_pred eCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCC
Q 014077 121 AVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDI 200 (431)
Q Consensus 121 sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~ 200 (431)
|++||||||+|++++..++++||.+.+.+++|.|+.. ++.+++|||+.|++..|.+++|.++++||++|+++|.+.+++
T Consensus 83 s~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl 161 (369)
T KOG1375|consen 83 SLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKL 161 (369)
T ss_pred eccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999986 899999999999999999999999999999999999999988
Q ss_pred CCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCC
Q 014077 201 ERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPS 280 (431)
Q Consensus 201 ~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~ 280 (431)
+.++ ++|.++||||++|.|++++..|++|||++||+.++++|++.....++..++++++++++|+.+
T Consensus 162 ~~~~-------------g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~~q~~a~tv~eltqq~fdak 228 (369)
T KOG1375|consen 162 KTPS-------------GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAK 228 (369)
T ss_pred cCCC-------------CceeecccccccchhhhhhhhccCCCcchhhccccccccccccccccccccccccccccccCc
Confidence 8877 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCccccccCCCCCCceeecCCCCccCCCCCcccccceEEEec
Q 014077 281 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIS 360 (431)
Q Consensus 281 ~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~ 360 (431)
|++..|+ |++++.++|| +.+++++++..++.|++..|++|+|+++|+++|.++|..+ ..+.+.++
T Consensus 229 nmm~a~d-----yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl--------kms~tf~~ 293 (369)
T KOG1375|consen 229 NMMTACD-----YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL--------KMSSTFIG 293 (369)
T ss_pred chhhhhh-----hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc--------cccccccc
Confidence 9999987 9999999999 8899999999999999999999999999999999999876 67889999
Q ss_pred cCcchHHHHHHHHHHHHHHhccccceeccccCCCChhhHHHHHHHHHHHHHHHHHHc
Q 014077 361 NSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 417 (431)
Q Consensus 361 N~t~i~~~l~~l~~~~~~~~~~kAflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~ 417 (431)
|+++|..+|+++.++|..||+||||||||+++||+|+||+||..++++|+.+|+++.
T Consensus 294 n~taiqelf~~i~eqftamfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~ 350 (369)
T KOG1375|consen 294 NNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 350 (369)
T ss_pred cchhHHHHHHHhhhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999994
No 17
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=2.5e-65 Score=507.16 Aligned_cols=328 Identities=45% Similarity=0.820 Sum_probs=302.8
Q ss_pred cEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccC
Q 014077 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 82 (431)
Q Consensus 3 eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gn 82 (431)
||++||+||||||||++||+++ |+||+|+++++.++..+.+.+|++.+.+.+++|+||
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~----------------------v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~ 58 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL----------------------VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGN 58 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh----------------------heecCCHHHHHHHhCcccccccCccceeecCCCCCC
Confidence 8999999999999999999854 999999999999988877788999999999999999
Q ss_pred CccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCcc
Q 014077 83 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSV 162 (431)
Q Consensus 83 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~ 162 (431)
||+.||+..|++..|+++|+||+++|+||++|||+++||+|||||||+|++++|.|||+||++++++++|+|+...+ ++
T Consensus 59 n~~~G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~-~~ 137 (328)
T cd00286 59 NWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEG-VI 137 (328)
T ss_pred CcceeeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCc-ch
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999997533 68
Q ss_pred chhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCCC
Q 014077 163 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVP 242 (431)
Q Consensus 163 ~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p 242 (431)
+++||++|++++|.+++|+++++||++|.++|.+.+.+..++|+++|++||++|+++|.++|+||.+|.|++++.++|+|
T Consensus 138 ~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p 217 (328)
T cd00286 138 VRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVP 217 (328)
T ss_pred hhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccCccccchHHHHhhhcCC
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCcc
Q 014077 243 YPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTI 322 (431)
Q Consensus 243 ~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~~~~~ 322 (431)
+|++||++++++|+.......+...++.+++++++++.++++.+++..++++++.+++||..+.+++.+....++.+.+.
T Consensus 218 ~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~~~~ 297 (328)
T cd00286 218 FPRLHFLMVGYAPLDSEGSATPTTLRVAELVRQALRSKNQMVVCDPTHGGYIAALLLVRGPVSPSEVREGIARVAPRTSH 297 (328)
T ss_pred CCCceeeccccCccccccccccccCCHHHHHHHHhCCCCeeeccCCCccchHHHHHHHhCCCChHHHHHHHHHHHHhCCc
Confidence 99999999999999876656667788999999999999999888888899999999999999999998888887776554
Q ss_pred ccccCCCCCCceeecCCCCccCCCCCcccccceEEEeccC
Q 014077 323 QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNS 362 (431)
Q Consensus 323 ~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~ 362 (431)
. +|.|++++++++.+++.. +.+.++++++|+
T Consensus 298 ~--~w~~~~~~~~~~~~~~~~-------~~~~~~~~l~Ns 328 (328)
T cd00286 298 L--SWSPPGIKVGVSPTPPAS-------EHKVSALLLSNS 328 (328)
T ss_pred C--CcCCCCEeEeecCCCCCC-------CcCeEEEEeccC
Confidence 4 899999999999876540 126788999986
No 18
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.7e-46 Score=383.80 Aligned_cols=403 Identities=19% Similarity=0.249 Sum_probs=279.5
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCC---------CCC------CCCcccceeeecCCCCccccccc-----
Q 014077 2 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQ---------MPS------DKTHVPRAVFVDLEPTVIDEVRT----- 61 (431)
Q Consensus 2 ~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~---------~~~------~~~~~pR~ilvD~e~~~i~~i~~----- 61 (431)
|||||||+||++|+||+||||.+...+.+.+++. ++. ..+|+||+|++|+....-.--+.
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~~~~l~~ 80 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPASELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPEEGSLKV 80 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCccccCCCceeeeccccCCCceeEcCcEEEEecCCcccccccccCcCC
Confidence 7999999999999999999998776665554431 221 34599999999987654211111
Q ss_pred ----------cc-cccccCccccccCc-----ccccCCccccccc---cchhHHHHHHHHHHhhhhhcCCCcceEEEeeC
Q 014077 62 ----------GT-YRQLFHPEQLISGK-----EDAANNFARGHYT---IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAV 122 (431)
Q Consensus 62 ----------~~-~~~~~~~~~~~~~~-----~g~gnn~a~G~~~---~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl 122 (431)
.+ .+-.|+|+++.... .+.+++|+.|+-. .+.+..|+++|+||+++|+||++||||+++|+
T Consensus 81 ~~l~~~v~~WSDy~r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl 160 (493)
T cd06060 81 YNLEASVNVWSDYLYARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDL 160 (493)
T ss_pred cccccchhhhhhcceeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEec
Confidence 11 13348999996542 3555666666532 25568899999999999999999999999999
Q ss_pred CCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCC----CCccchhhHHHHHHHhhhccCceeEEecCh-hhHHhhhh-
Q 014077 123 GGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQV----STSVVEPYNSVLSTHSLLEHTDVAVLLDNE-AIYDICRR- 196 (431)
Q Consensus 123 ~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~----~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~-~l~~~~~~- 196 (431)
+||| ||+|+.++|.|+||||++.++++++.|.... .+.++++||++|++.+|.+++|+++|+.-. ..|.....
T Consensus 161 ~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p 239 (493)
T cd06060 161 HDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPP 239 (493)
T ss_pred CCcc-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCC
Confidence 9999 8999999999999999999999999997532 257899999999999999999999999844 44432211
Q ss_pred ----cCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCCCCCcccccccccc-cccccccccccccCHHH
Q 014077 197 ----SLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYA-PVISAEKAYHEQLSVAE 271 (431)
Q Consensus 197 ----~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p~p~~~fl~~~~~-pl~~~~~~~~~~~~~~~ 271 (431)
.+.++...-.+..+++|.+|.++|.|+|..+.. .+|.+++..|.+..| |+.....+ |+-.. ....+.+
T Consensus 240 ~~~~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~gR-ki~~~~~a~P~p~~-----~~~~l~d 312 (493)
T cd06060 240 RTFPYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSGR-KVVAAGLALPFPMV-----GGQDLID 312 (493)
T ss_pred CCCcccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhccc-hhhhhccCCCCCCC-----CCCcHHH
Confidence 123334456678899999999999999998765 579999999987665 66555443 43221 1235666
Q ss_pred HHHHhcC--CCCCCcccC-CCCCceeeeeecccccCC----------------------hhhHHHHHHhhhccCccc--c
Q 014077 272 ITNSAFE--PSSMMAKCD-PRHGKYMACCLMYRGDVV----------------------PKDVNAAVATIKTKRTIQ--F 324 (431)
Q Consensus 272 l~~~~~~--~~~~~~~~~-~~~~~~ls~~~i~RG~~~----------------------~~~~~~~~~~~~~~~~~~--f 324 (431)
+++.+-. +..++. ++ +...+++++.+++||... .+++.+.+.+-..+.+.. .
T Consensus 313 ~L~~~~~~~~~~~l~-p~~~~~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~~~~~ 391 (493)
T cd06060 313 FLDQSDGAVPWLQLT-PGCQIGTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSMSALS 391 (493)
T ss_pred HHHhcCCCCCccccC-CCCccCceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcchhhe
Confidence 6665422 122332 22 335689999999999431 112222221111111110 1
Q ss_pred cc----CCCCCCceeec-CCCCccC------CCCCc--ccccceEEEeccCcchHHHHHHHHHHHHHHhccccceecccc
Q 014077 325 VD----WCPTGFKCGIN-YQPPTVV------PGGDL--AKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVG 391 (431)
Q Consensus 325 ~~----w~p~~~~~~~~-~~~~~~~------~~~~~--~~~~~s~~~l~N~t~i~~~l~~l~~~~~~~~~~kAflh~Y~~ 391 (431)
+. -+|.+|..-+. .+...+. ..... ...-+.++.|.|++++.+.|+.++.++.++--+| +|.|.+
T Consensus 392 ~~~~p~~~~~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~~~~~ 469 (493)
T cd06060 392 VLPLPLKIRVPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KASFFE 469 (493)
T ss_pred ecCCCCCCCCCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hhcccc
Confidence 10 11222221111 0011100 00000 0113456788999999999999999999999999 999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHH
Q 014077 392 EGMEEGEFSEAREDLAALEKDYEE 415 (431)
Q Consensus 392 ~Gmee~eF~Ea~~~l~~l~~~Y~~ 415 (431)
.|+|+|||+|++++|.++.++|++
T Consensus 470 ~g~e~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 470 SGLEEDEYKELLEQLLDLAECYED 493 (493)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999963
No 19
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=2.7e-48 Score=362.98 Aligned_cols=202 Identities=48% Similarity=0.870 Sum_probs=186.9
Q ss_pred cEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCC-------------CCCCcccceeeecCCCCccccccccccccccC
Q 014077 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP-------------SDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFH 69 (431)
Q Consensus 3 eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~-------------~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~ 69 (431)
|||+||+||||||||.+||+++++||+++++.... ....|+||+|+||+||+++++++..+.+++|.
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~ 80 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFD 80 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccccccccccccceeeeccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999987642111 12348899999999999999999888778999
Q ss_pred ccccccCcccccCCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeE
Q 014077 70 PEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 149 (431)
Q Consensus 70 ~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~ 149 (431)
+++++.+++|+|+||+.||+..|+++.++++|+||+++|+||.+|||+++||+|||||||+++.|++.||++||++++++
T Consensus 81 ~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~ 160 (216)
T PF00091_consen 81 PNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIIS 160 (216)
T ss_dssp GGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCch
Q 014077 150 FTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYT 206 (431)
Q Consensus 150 ~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~ 206 (431)
++|+|+. .+.++++||++++|++|.+++|++|++||++|.++|.+.++++.|+|+
T Consensus 161 ~~ilP~~--~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~ 215 (216)
T PF00091_consen 161 FSILPFS--SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFN 215 (216)
T ss_dssp EEEE-CG--GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHH
T ss_pred ccccccc--cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcC
Confidence 9999994 388999999999999999999999999999999999999998887775
No 20
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=7.9e-37 Score=280.39 Aligned_cols=178 Identities=41% Similarity=0.697 Sum_probs=167.0
Q ss_pred cccceeeecCCCCccccccccccccccCccccccCcccccCCccccccc-----cchhHHHHHHHHHHhhhhhcCCCcce
Q 014077 42 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYT-----IGKEIVDLCLDRIRKLADNCTGLQGF 116 (431)
Q Consensus 42 ~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~-----~g~~~~~~~~d~ir~~~E~cD~lqgf 116 (431)
+.||+|++|+|+++++.+..++.++.|++++.+..+.++||||++||+. .|+++.++++|+||+++|+| |+|
T Consensus 10 ~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir~~le~~---d~~ 86 (192)
T smart00864 10 YGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIREELEGA---DGV 86 (192)
T ss_pred chhhHHhhhcccCCceEEEECCHHHHhCCcccccchhcccccccccCCCCCChHHHHHHHHHHHHHHHHHhcCC---CEE
Confidence 6799999999999999988777788899989989999999999999998 89999999999999999999 899
Q ss_pred EEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhh
Q 014077 117 LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRR 196 (431)
Q Consensus 117 ~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~ 196 (431)
+++||+|||||||+|+.+++.++ +||+.. ++++|+|. ..+..+++||++++|++|.+++|.++++||++|.+.|.+
T Consensus 87 ~i~~slgGGTGsG~~~~i~~~~~-~~~~~~-~~~~v~P~--~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~ 162 (192)
T smart00864 87 FITAGMGGGTGTGAAPVIAEIAK-EYGILT-VAVVTKPF--VFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGR 162 (192)
T ss_pred EEeccCCCCccccHHHHHHHHHH-HcCCcE-EEEEEEeE--eecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhc
Confidence 99999999999999999999999 999877 99999994 368899999999999999999999999999999999987
Q ss_pred cCCCCCCCchhhhHHHHHHHhhcccccccCC
Q 014077 197 SLDIERPTYTNLNRLVSQVISSLTASLRFDG 227 (431)
Q Consensus 197 ~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~ 227 (431)
.+.+ .++|+++|++|++.|+++|.++||||
T Consensus 163 ~~~~-~~~~~~~N~~i~~~i~~i~~~~rf~g 192 (192)
T smart00864 163 NLPI-RPAFKDANDLLAQAVSGITDLIRFPG 192 (192)
T ss_pred cCCc-hHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7765 67999999999999999999999986
No 21
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=5e-33 Score=276.28 Aligned_cols=214 Identities=21% Similarity=0.299 Sum_probs=185.8
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcc--
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKE-- 78 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~-- 78 (431)
|+ |..|++|+||+.|-+++++. +.. .+..|+||+|+||+++..++.++. .+.++.++.+++
T Consensus 1 m~-i~viGvGg~G~niv~~l~~~-----~~~------~~~~~~~~~iavntD~~~L~~l~~-----~~~~~ki~~g~~~t 63 (349)
T cd02202 1 MR-VLIIGVGQAGGRIVDALNRH-----DKR------SGFGYCVGALAINTAKNDLKGLKH-----IPAEDRILIGQSEV 63 (349)
T ss_pred CE-EEEEEeCCcHHHHHHHHHHh-----CCC------cCCccceeEEEEECCHHHHHhhhc-----CCCCCEEEecCccc
Confidence 44 88899999999999999862 111 112388999999999999988754 335677777764
Q ss_pred ---cccCCccccccccchhHHHHHHHHHHhhhhhcCC--CcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEe
Q 014077 79 ---DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 153 (431)
Q Consensus 79 ---g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~--lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~ 153 (431)
|+|+||. .|+++.++..|.||+++|.||. +|+|++++|||||||||+++.+++.++++|| +++++++++
T Consensus 64 ~G~GaG~~~~-----~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~ 137 (349)
T cd02202 64 KGHGVGADRE-----LGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVL 137 (349)
T ss_pred CCCCCCCChH-----HHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEe
Confidence 6667765 4679999999999999999997 9999999999999999999999999999999 899999999
Q ss_pred cCCCCCCccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccccccc-----CCC
Q 014077 154 PSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF-----DGA 228 (431)
Q Consensus 154 P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~-----~~~ 228 (431)
|+.. +..+++||+++++++|.+++|.+|+|+|++|.+.+.. + .+.|+++|++|++.|..++.+.|| ||.
T Consensus 138 P~~~--eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~-~---~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g~ 211 (349)
T cd02202 138 PARE--EGERYSANAARSLDALSEEADAIILFDNDAWKRKGES-V---EEAYDRINEEIARRIGLLLRAGEANAGDSVGE 211 (349)
T ss_pred cCCC--CCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc-h---HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCe
Confidence 9874 4589999999999999999999999999999998742 2 368999999999999999999999 999
Q ss_pred CccchhhhhccCCCC
Q 014077 229 LNVDVTEFQTNLVPY 243 (431)
Q Consensus 229 ~n~~l~~~~~~L~p~ 243 (431)
+|.|++++.++|.+.
T Consensus 212 invD~~dv~~~L~~~ 226 (349)
T cd02202 212 SVLDASEVINTLSGG 226 (349)
T ss_pred EeccHHHHHHHhccC
Confidence 999999999999764
No 22
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=99.96 E-value=9.7e-30 Score=247.86 Aligned_cols=224 Identities=25% Similarity=0.385 Sum_probs=164.4
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHhhcCCCCCCC------CC------C------CCCcccceeeecCCCCcc------
Q 014077 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQ------MP------S------DKTHVPRAVFVDLEPTVI------ 56 (431)
Q Consensus 1 M~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~------~~------~------~~~~~pR~ilvD~e~~~i------ 56 (431)
||||+|||+|+.+|++|+||||++..-.++.++.. .+ . ..+|+||+|++|+....-
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~~~~~ 80 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPGELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTLKYQG 80 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChhhcCcchhhhhccccccCceeeccceeEEecCccccccccch
Confidence 99999999999999999999998766555544321 11 1 124999999999643321
Q ss_pred ------------------ccccc-------------------------------------------cccccccCcccccc
Q 014077 57 ------------------DEVRT-------------------------------------------GTYRQLFHPEQLIS 75 (431)
Q Consensus 57 ------------------~~i~~-------------------------------------------~~~~~~~~~~~~~~ 75 (431)
..++. .-.+..|+|+++..
T Consensus 81 ~~~~~~~~~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yHp~tl~~ 160 (483)
T KOG2530|consen 81 ELYNDSHLGNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYHPRTLNP 160 (483)
T ss_pred hhccchhcccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcCcccccc
Confidence 00000 00123377777754
Q ss_pred Cc-----ccccCCccccccccch-hHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeE
Q 014077 76 GK-----EDAANNFARGHYTIGK-EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 149 (431)
Q Consensus 76 ~~-----~g~gnn~a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~ 149 (431)
.+ .++-+++.-|+..+-+ .+.+++.|+||.++|+||++|||+++.++.+||| |+++.++|.|+|||+++.+++
T Consensus 161 l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~v~t 239 (483)
T KOG2530|consen 161 LNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKAVFT 239 (483)
T ss_pred CCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCceec
Confidence 33 2334566666544432 3679999999999999999999999999999996 999999999999999999999
Q ss_pred EEEecCCCC-CCccc---h---hhHHHHHHHhhhccCceeEEecChh-hHHhhhhcCCCCCCCchhhhHHHHHHHhhccc
Q 014077 150 FTVYPSPQV-STSVV---E---PYNSVLSTHSLLEHTDVAVLLDNEA-IYDICRRSLDIERPTYTNLNRLVSQVISSLTA 221 (431)
Q Consensus 150 ~~v~P~~~~-~~~~~---~---~yN~~lsl~~l~~~~d~~i~~~N~~-l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 221 (431)
|+..|.+.. ++... . ..|.+|++.+|.+.|++++|+.--. +. ...+..+++|.++.++|.
T Consensus 240 w~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~~~------------~~~~tsA~~a~~~ds~tl 307 (483)
T KOG2530|consen 240 WGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASGLG------------DLWETSAKLARAFDSITL 307 (483)
T ss_pred cccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeeccccccccc------------cHHHHHHHHHhhcccccc
Confidence 999985431 22211 2 5689999999999999999987432 22 234667899999999999
Q ss_pred ccccCCCCccchhhhh
Q 014077 222 SLRFDGALNVDVTEFQ 237 (431)
Q Consensus 222 ~~r~~~~~n~~l~~~~ 237 (431)
|.|..++.+.-++++.
T Consensus 308 ptr~~ssS~~~~~d~l 323 (483)
T KOG2530|consen 308 PTRLISSSNLRQRDTL 323 (483)
T ss_pred cceecchhHHHHHHHH
Confidence 9999887555554444
No 23
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.95 E-value=1.8e-28 Score=239.25 Aligned_cols=205 Identities=19% Similarity=0.271 Sum_probs=170.2
Q ss_pred cEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccC
Q 014077 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 82 (431)
Q Consensus 3 eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gn 82 (431)
.|..|++|+||+.+-+++++. ++. -.+.++||++.+.++.+.. +.+-++.++ .+...|+|+
T Consensus 2 ~i~viGvGg~G~n~v~~~~~~-----~~~-----------~~~~iainTd~~~L~~~~a-~~ki~iG~~--~t~g~GaG~ 62 (303)
T cd02191 2 KIAVIGFGGAGGNIVDKFLEY-----DKE-----------GRSAVAVNTDAQDLLGLEA-ENRVLIGQA--RTKGLGAGA 62 (303)
T ss_pred EEEEEEECchHHHHHHHHHHc-----CCC-----------CccEEEEECcHHHHhcCCC-CcEEecCCc--cccCCCCCC
Confidence 378899999999999999851 111 1578999999988887653 222122111 123458999
Q ss_pred CccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCcc
Q 014077 83 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSV 162 (431)
Q Consensus 83 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~ 162 (431)
||+.| ++..++++|+||+.+|.||. |++++++|||||||+++.+++.+++.|+ .+++|+|.+...|..
T Consensus 63 ~~~~G-----~~~a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~----~~~~vvt~Pf~~Eg~ 130 (303)
T cd02191 63 NPELG-----AEAAEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT----LTVAVVTLPFSDEGG 130 (303)
T ss_pred CHHHH-----HHHHHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC----CEEEEEeCCcccCCc
Confidence 98765 58889999999999999994 8999999999999999999999999985 455555554446788
Q ss_pred chhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccC
Q 014077 163 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNL 240 (431)
Q Consensus 163 ~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L 240 (431)
+++||+.+++++|.+++|.+|++||++|.+.+.+ +.+. ..|+.+|++|++.+.++|..+|+||.+|.|++++.+.|
T Consensus 131 ~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l 206 (303)
T cd02191 131 IRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVM 206 (303)
T ss_pred cchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHh
Confidence 9999999999999999999999999999999976 6664 49999999999999999999999999999999998766
No 24
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.94 E-value=3.7e-27 Score=230.96 Aligned_cols=207 Identities=14% Similarity=0.268 Sum_probs=169.2
Q ss_pred EEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccCC
Q 014077 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 83 (431)
Q Consensus 4 ii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn 83 (431)
|..|++|+||+.+-+++++. ++. -...+.+|+|.+.++.+.. +.+-++.++ .+...|+|+|
T Consensus 3 i~viGvGg~G~n~v~~l~~~-----~~~-----------~~~~~a~ntD~~~L~~~~~-~~k~~ig~~--~t~g~Gag~~ 63 (304)
T cd02201 3 IKVIGVGGGGGNAVNRMIES-----GLE-----------GVEFIAANTDAQALAKSKA-PNKIQLGKE--LTRGLGAGGD 63 (304)
T ss_pred EEEEEeCCcHHHHHHHHHHc-----CCC-----------CceEEEEECCHHHHhcCCC-CcEEEcCCC--CCCCCCCCCC
Confidence 77899999999999999861 111 1568999999988887653 222223222 1334688999
Q ss_pred ccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccc
Q 014077 84 FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVV 163 (431)
Q Consensus 84 ~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~ 163 (431)
|+.| ++..++.+|+||+.+|.||.+ ++++|+|||||||+++.+++..+ +|+ +.++++.++|+. .+..+
T Consensus 64 ~~~g-----~~~a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~-e~g-~~~~~vvt~Pf~--~Eg~~ 131 (304)
T cd02201 64 PEVG-----RKAAEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAK-EMG-ALTVAVVTKPFS--FEGKK 131 (304)
T ss_pred HHHH-----HHHHHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHH-HcC-CCEEEEEeCCcc--ccchh
Confidence 8866 577889999999999999975 99999999999999999776665 465 355555566654 57779
Q ss_pred hhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCCC
Q 014077 164 EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVP 242 (431)
Q Consensus 164 ~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p 242 (431)
++||+.++++.|.+++|.++++||++|.+.|.+.+.+.. .|+.+|++|++.+.++|.++|+||.+|.|++++.+.|-.
T Consensus 132 ~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~ 209 (304)
T cd02201 132 RMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKN 209 (304)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhcc
Confidence 999999999999999999999999999999977777665 899999999999999999999999999999999988753
No 25
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.94 E-value=1.2e-26 Score=229.93 Aligned_cols=206 Identities=15% Similarity=0.278 Sum_probs=166.0
Q ss_pred cEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccC
Q 014077 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 82 (431)
Q Consensus 3 eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gn 82 (431)
.|..|++|+||+.|-+++++. ++ .....+.+|++.+.++.+.. +.+-++.++ .+...|+|+
T Consensus 19 ~i~viGvGg~G~n~v~~l~~~-----~~-----------~~~~~iainTD~~~L~~~~a-~~ki~iG~~--~t~G~GaG~ 79 (349)
T TIGR00065 19 KIKVIGVGGGGNNTVNRMLEE-----GV-----------EGVEFIAINTDAQHLKTTKA-DKKILIGKK--LTRGLGAGG 79 (349)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CC-----------CceEEEEEECCHHHHhcCCC-CeEEEcCCC--CCCCCCCCC
Confidence 478899999999999999763 11 12678999999887776653 122222221 123358899
Q ss_pred CccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCcc
Q 014077 83 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSV 162 (431)
Q Consensus 83 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~ 162 (431)
+|+. |++..++.+|+||+.+|.||.+ ++++|+|||||||+++.+++.+++ |+ +.++++.++|+ ..+..
T Consensus 80 ~~~~-----G~~~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~-~l~vaivt~Pf--~~Eg~ 147 (349)
T TIGR00065 80 NPEI-----GRKAAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG-ALTVAVVTKPF--KFEGL 147 (349)
T ss_pred CHHH-----HHHHHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC-CCEEEEEeCCc--cccch
Confidence 9875 5789999999999999999986 999999999999999866666554 54 44455555555 45788
Q ss_pred chhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCC
Q 014077 163 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLV 241 (431)
Q Consensus 163 ~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~ 241 (431)
+++||+.+++++|.+++|.+|++||++|.+.|.+ +.+.. .|+.+|++|++.+.++|.++|+||.+|.|+.++.+-|-
T Consensus 148 ~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~~-af~~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~ 224 (349)
T TIGR00065 148 KRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLND-AFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMS 224 (349)
T ss_pred hhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHh
Confidence 9999999999999999999999999999999977 76644 99999999999999999999999999999999987663
No 26
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.93 E-value=1.6e-25 Score=222.52 Aligned_cols=206 Identities=17% Similarity=0.315 Sum_probs=168.7
Q ss_pred cEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccC
Q 014077 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 82 (431)
Q Consensus 3 eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gn 82 (431)
.|..|++|+||+.+-+++++. ++. -...|.||++.+.+..+... .+-++.++ ++...|+|+
T Consensus 30 ~I~ViGvGGaG~N~v~~m~~~-----~~~-----------~v~~iaiNTD~q~L~~~~a~-~ki~iG~~--~t~G~GaG~ 90 (378)
T PRK13018 30 KIVVVGCGGAGNNTINRLYEI-----GIE-----------GAETIAINTDAQHLAMIKAD-KKILIGKS--LTRGLGAGG 90 (378)
T ss_pred eEEEEEeCCcHHHHHHHHHHc-----CCC-----------CceEEEEECCHHHHhcCCCC-cEEecCCc--cCCCCCCCC
Confidence 378899999999999999851 211 15689999999887765432 11111111 123457888
Q ss_pred CccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCcc
Q 014077 83 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSV 162 (431)
Q Consensus 83 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~ 162 (431)
+|..| ++..++.+|.||+.+|.||. |+|++|||||||||+++.+++.+++ ++ ...+++++.|+. .+..
T Consensus 91 dp~~G-----~~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~--~EG~ 158 (378)
T PRK13018 91 DPEVG-----RKAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK--FEGR 158 (378)
T ss_pred ChHHH-----HHHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc--cccH
Confidence 87765 57788889999999999997 7999999999999999999999987 43 566788888986 4667
Q ss_pred chhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCC
Q 014077 163 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLV 241 (431)
Q Consensus 163 ~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~ 241 (431)
.+..|+.+++++|.+++|.+|++||++|.++| ..+.+.. .|+.+|++|++.+.++|.++|+||.+|.|++++.+-|-
T Consensus 159 ~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~~-af~~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~ 235 (378)
T PRK13018 159 ARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIAD-AFSVADEVIAETVKGITETITKPSLINLDFADVKSVMK 235 (378)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHHH-HHHHHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhc
Confidence 89999999999999999999999999999999 6666654 89999999999999999999999999999999987663
No 27
>PRK09330 cell division protein FtsZ; Validated
Probab=99.89 E-value=2.2e-23 Score=207.54 Aligned_cols=207 Identities=16% Similarity=0.272 Sum_probs=165.5
Q ss_pred cEEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccC
Q 014077 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAAN 82 (431)
Q Consensus 3 eii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gn 82 (431)
.|..|++|+||+.+-+++++. ++. -...|.+|+|.+.+..+... .+-++.++ ++...|+|+
T Consensus 15 ~IkViGvGG~G~Nav~~m~~~-----~~~-----------~v~fia~NTD~q~L~~~~a~-~ki~lG~~--~t~GlGaG~ 75 (384)
T PRK09330 15 VIKVIGVGGGGGNAVNRMIEE-----GIQ-----------GVEFIAANTDAQALLKSKAP-VKIQLGEK--LTRGLGAGA 75 (384)
T ss_pred eEEEEEECCcHHHHHHHHHHc-----CCC-----------CceEEEEeCcHHHHhcCCCC-eEEEcCCc--ccccCCCCC
Confidence 478899999999999998752 211 13579999988877765432 12112111 123358888
Q ss_pred CccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCcc
Q 014077 83 NFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSV 162 (431)
Q Consensus 83 n~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~ 162 (431)
+|.. |++..++..+.||+.+|.||.+ +|+++||||||||.++. +..+..+|+ +++++|+|.+...|..
T Consensus 76 ~pe~-----G~~aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapv-IA~iake~g---~ltvaVvt~PF~fEG~ 143 (384)
T PRK09330 76 NPEV-----GRKAAEESREEIREALEGADMV---FITAGMGGGTGTGAAPV-VAEIAKELG---ILTVAVVTKPFSFEGK 143 (384)
T ss_pred CHHH-----HHHHHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHH-HHHHHHHcC---CcEEEEEecCccccch
Confidence 8774 5788999999999999999987 99999999999999995 555666665 5566666655556888
Q ss_pred chhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCC
Q 014077 163 VEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLV 241 (431)
Q Consensus 163 ~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~ 241 (431)
+++||+.++|+.|.+++|.+|+++|+.|.+++.+.+.+.. .|+.+|.+|++.+.+++..+++||.+|.|+.++.+-|-
T Consensus 144 ~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 144 KRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMS 221 (384)
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHh
Confidence 9999999999999999999999999999999876666554 89999999999999999999999999999998876653
No 28
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.88 E-value=7.1e-23 Score=175.14 Aligned_cols=126 Identities=59% Similarity=1.025 Sum_probs=112.9
Q ss_pred CcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCceeeeeecccccCChhhHHHHHHhhhccCccc
Q 014077 244 PRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ 323 (431)
Q Consensus 244 p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~~~~~~ 323 (431)
|++||++++++|+.......++..++.+|++++|+++|+|++|+|+.++||++++++||+..++|+.+.+.+++.+.+..
T Consensus 1 PrlHFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~m~~~~~~~gkyla~~~l~RG~v~~~di~~~i~~ik~~~~~~ 80 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPEDSNYEKLSVQDLTRQLFDPKNQMVSCDPRQGKYLACALLYRGDVSPKDINEAIAKIKQKNSIQ 80 (126)
T ss_dssp TTT-EEEEEESSTSBTTSTTSSCCTHHHHHHHHTSGGGBSSSS-TTSS-EEEEEEEEEESSTHHHHHHHHHHHHCTSTTS
T ss_pred CCeeeecCccccccccchhhhhcccHhHhhHHHHhhhhhccccccccchhhhhhhccccccccchhhhHHHhhhhccccc
Confidence 89999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceeecCCCCccCCCCCcccccceEEEeccCcchHHHHHHHHH
Q 014077 324 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDH 374 (431)
Q Consensus 324 f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~l~~l~~ 374 (431)
|++|+|++||+++|+++|...+.. ..++++|+|+|+|.+.|++|..
T Consensus 81 Fv~W~p~~~kv~~~~~~p~~~~~s-----~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 81 FVDWIPTGFKVGICKVPPYGQPNS-----DRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp B-SSSTTCEEEEEESS-STSTTTS-----SEEEEEEEEEGGGHHHHHHHHH
T ss_pred eeeecCchhhcccccCCCcccCCC-----cceEEEeCChHHHHHHHHHhcC
Confidence 999999999999999998866432 5679999999999999999863
No 29
>PF14881 Tubulin_3: Tubulin domain
Probab=99.87 E-value=5.4e-22 Score=178.93 Aligned_cols=133 Identities=26% Similarity=0.388 Sum_probs=104.9
Q ss_pred cCCccccccccch-hHHHHHHHH-HHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcce-eEEEEecCCC
Q 014077 81 ANNFARGHYTIGK-EIVDLCLDR-IRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK-LGFTVYPSPQ 157 (431)
Q Consensus 81 gnn~a~G~~~~g~-~~~~~~~d~-ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i-~~~~v~P~~~ 157 (431)
-.+|..|...+.. +..++++|+ ||.++|+||++||||++.++.+||| |+++.++|+||||||++++ +++++.+...
T Consensus 40 Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~Le~L~DEy~k~~i~~~~~~~~~~~ 118 (180)
T PF14881_consen 40 FDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLLEHLRDEYPKKPIIWVWGLRDPSS 118 (180)
T ss_pred cccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHHHHHHHHcCCCceEEeecCCCccc
Confidence 3456677644433 344667775 9999999999999999999999997 9999999999999999996 6666654432
Q ss_pred CCC-----ccchhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccccccc
Q 014077 158 VST-----SVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRF 225 (431)
Q Consensus 158 ~~~-----~~~~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~ 225 (431)
... ...+.+|.++++..|.++|++++|+.... +..+..+..+++|.+|.++|.|+|.
T Consensus 119 ~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 119 SSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHHHHHHHHHHhccccCCC
Confidence 211 12456899999999999999999998311 2235569999999999999999984
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.54 E-value=4.9e-14 Score=137.83 Aligned_cols=206 Identities=16% Similarity=0.236 Sum_probs=158.8
Q ss_pred EEEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCccccccccccccccCccccccCcccccCC
Q 014077 4 CISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN 83 (431)
Q Consensus 4 ii~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn 83 (431)
|.+|++|+|||.+-+++.+ +++.. ...+.+.++-..+..... ++.+..++.-..+-
T Consensus 14 I~VIGvGg~G~n~v~~m~~-----~~~~g-----------ve~ia~nTD~q~L~~~~a--------~~ki~iG~~~t~Gl 69 (338)
T COG0206 14 IKVIGVGGAGGNAVNRMIE-----EGVEG-----------VEFIAINTDAQALKSSKA--------DRKILIGESITRGL 69 (338)
T ss_pred EEEEEeCCcchHHHHHHHH-----hhhCc-----------eEEEEeccCHHHHhcccc--------CeEEEeccceeecc
Confidence 7889999999999999864 23221 345666776666554432 22233333211112
Q ss_pred ccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccc
Q 014077 84 FARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVV 163 (431)
Q Consensus 84 ~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~ 163 (431)
-+.+.+..|++..++..+.|+..++.-| -++++.++|||||+|.++.+++.+++ .....++++++|+.. |...
T Consensus 70 GaGa~P~vG~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~~--EG~~ 142 (338)
T COG0206 70 GAGANPEVGRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFSF--EGSP 142 (338)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecchh--cCch
Confidence 2233377889999999999999988766 56899999999999999999999998 478888999999874 5667
Q ss_pred hhhHHHHHHHhhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccccccCCCCccchhhhhccCCC
Q 014077 164 EPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVP 242 (431)
Q Consensus 164 ~~yN~~lsl~~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~~~~n~~l~~~~~~L~p 242 (431)
+.-|+..++..|.+++|.+|+++|+.|.+... ...+ ...|...|.++++.+.+++..+.-||..|.|+.++.+-+-.
T Consensus 143 r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 143 RMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 88899999999999999999999999987654 2211 23677889999999999999999999999999998876655
No 31
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=98.92 E-value=9.8e-10 Score=92.16 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=37.8
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHhhcC---------CCCCCCCCC------CCCcccceeeecCCCC
Q 014077 2 RECISIHIGQAGIQVGNACWELYCLEHG---------IQPDGQMPS------DKTHVPRAVFVDLEPT 54 (431)
Q Consensus 2 ~eii~iq~Gq~Gn~Ig~~fw~~~~~e~~---------~~~~~~~~~------~~~~~pR~ilvD~e~~ 54 (431)
|||||||+|+.+|+||+||||.+..-.. ++++..++. ..+|+||+|++|+...
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~ 68 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPDEKPSEIDHDVLFREGITLSGTVTYTPRLLLFDLKGG 68 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCccccCcccCCceEEecccCcCCCeeECCcEEEEecCCC
Confidence 7999999999999999999996533221 222222221 2359999999997554
No 32
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.27 E-value=4.7e-07 Score=76.00 Aligned_cols=114 Identities=25% Similarity=0.392 Sum_probs=84.4
Q ss_pred CccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHH--HhcCCCCCCcccCCCCCceeeeeecccccCCh
Q 014077 229 LNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITN--SAFEPSSMMAKCDPRHGKYMACCLMYRGDVVP 306 (431)
Q Consensus 229 ~n~~l~~~~~~L~p~p~~~fl~~~~~pl~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~ 306 (431)
+|.|++++.++|+|+| |+.++++|.... .+..+..++.. .++++.+++..+++.. |+++.. +...
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~----~~~~~a~~~~~~~~l~~~~~~~~a~~~~~--~l~~~~----~~~~ 67 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE----NRALEAAELAISSPLLEPSNIMGAKGVLV--NITGGP----DLTL 67 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC----ChHHHHHHHHHhCcccCCcchhhcCceEE--EEEcCC----CCCH
Confidence 4789999999999999 889999999762 33455666666 7788887777665543 676665 5678
Q ss_pred hhHHHHHHhhhccCc-cccccCCC-CCCceeecCCCCccCCCCCcccccceEEEecc-CcchHHHHHHHH
Q 014077 307 KDVNAAVATIKTKRT-IQFVDWCP-TGFKCGINYQPPTVVPGGDLAKVQRAVCMISN-STSVAEVFSRID 373 (431)
Q Consensus 307 ~~~~~~~~~~~~~~~-~~f~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~N-~t~i~~~l~~l~ 373 (431)
.++.+.+..++.+.. ..|+.|.| ..+++ ..+.+.++| +|+|...|+++.
T Consensus 68 ~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~------------------~~~~~~i~ni~t~i~~~~~~~~ 119 (120)
T smart00865 68 KEVNEAMERIREKADPDAFIIWGPVIDEEL------------------GGDEIRVTVIATGIGSAFKRLS 119 (120)
T ss_pred HHHHHHHHHHHHhcCCCceEEEccccCCcC------------------CCCcEEEEEEecccCccccccC
Confidence 899998888877655 77889988 33311 134578899 999999888753
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=98.03 E-value=7.1e-05 Score=75.00 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=95.0
Q ss_pred EEEecCCchhHHHHHHHHHHHhhcCCCCCCCCCCCCCcccceeeecCCCCcc-------------ccccc-------c--
Q 014077 5 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTHVPRAVFVDLEPTVI-------------DEVRT-------G-- 62 (431)
Q Consensus 5 i~iq~Gq~Gn~Ig~~fw~~~~~e~~~~~~~~~~~~~~~~pR~ilvD~e~~~i-------------~~i~~-------~-- 62 (431)
+.|++|++|..+..++=+.+..+.+-.+ .+ -.-+-|.||++.... ..... .
T Consensus 1 lvIGlGGTG~~~l~~l~~~l~~~~~~~~---~~----~~v~Fl~iDt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (345)
T PF13809_consen 1 LVIGLGGTGGKILARLRRRLREELGGLE---LP----PCVQFLYIDTDENSGLADGRSHGVGISLDEIEKLYAFITSSDL 73 (345)
T ss_pred CEEEeCchHHHHHHHHHHHHHHHhcCcC---CC----CcEEEEEEEcCcccccccccccccccccCchhhcccccchhhH
Confidence 4689999999999999888777654110 00 112456666665511 00000 0
Q ss_pred --------cc----ccccCcc---ccccCcccccCCccccccccchhHHHHHHHHHHhhhh---------hc-CCCcceE
Q 014077 63 --------TY----RQLFHPE---QLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLAD---------NC-TGLQGFL 117 (431)
Q Consensus 63 --------~~----~~~~~~~---~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E---------~c-D~lqgf~ 117 (431)
.+ .| +.++ +......|+|...+.|....- ...+++.+.|++.+. .. +.-=-++
T Consensus 74 ~~~~~~~~~~~~i~~W-~p~~~~~~~~~~~~GAgq~R~~GRla~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~ 151 (345)
T PF13809_consen 74 SQRLDRLSAYPEIAEW-LPPELERNNTPLSAGAGQIRALGRLAFF-SNYQEIREALEAALDNFMQERLGGKGGGGGLNVF 151 (345)
T ss_pred HHHHhcccCCchhhhc-CCccccccCCchhcCCCCcccchHHHHH-HHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEE
Confidence 00 01 1111 123345677777777754331 223444444444444 11 0000268
Q ss_pred EEeeCCCCcccCchHHHHHHhhhhh-----CCcceeEEEEecCCCCCC---ccchhhHHHHHHHhhhc
Q 014077 118 VFNAVGGGTGSGLGSLLLERLSVDY-----GKKSKLGFTVYPSPQVST---SVVEPYNSVLSTHSLLE 177 (431)
Q Consensus 118 ~~~sl~GGtGSG~gs~l~e~l~dey-----p~~~i~~~~v~P~~~~~~---~~~~~yN~~lsl~~l~~ 177 (431)
|++|++||||||+---++-.||+.+ ....+..+.++|....+. .....-|+.-+|.+|..
T Consensus 152 Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~ 219 (345)
T PF13809_consen 152 VVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDY 219 (345)
T ss_pred EEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHH
Confidence 9999999999999888888888866 455688999999854221 13445577777666643
No 34
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=75.23 E-value=5.1 Score=33.96 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=31.8
Q ss_pred CCcccCchHHHHHHhhhhhCC-cceeEEEEecCCCCCCccchhhHHHHHHHhhhccCce
Q 014077 124 GGTGSGLGSLLLERLSVDYGK-KSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV 181 (431)
Q Consensus 124 GGtGSG~gs~l~e~l~deyp~-~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~ 181 (431)
+|-|.|+|..+++.||.++|+ ..+++.+. |++-+-.-|...+|.
T Consensus 6 DGQGGGiG~~iv~~lr~~~~~~~eI~AlGT--------------Na~AT~~MlKaGA~~ 50 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELPEEVEIIALGT--------------NAIATSAMLKAGANE 50 (131)
T ss_pred eCCCChhHHHHHHHHHHhCCCCcEEEEEeh--------------hHHHHHHHHHcCCCC
Confidence 355679999999999999998 77777754 555555555555543
No 35
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=72.50 E-value=3.2 Score=35.13 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCch-HHHHHHhhhh
Q 014077 97 DLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLG-SLLLERLSVD 141 (431)
Q Consensus 97 ~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~g-s~l~e~l~de 141 (431)
+...++|+..+++++. +|++++.+| |||= +- ...+|.+.++
T Consensus 42 gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp--~n~~~a~e~~~~~ 83 (124)
T PRK14484 42 GTSFDQIQEAIEKNES-DGVLIFFDL-GSAE--MNAEMAIEMLDGE 83 (124)
T ss_pred cchHHHHHHHHHhcCc-CCeEEEEeC-CChH--HHHHHHHHhcCCC
Confidence 3456889999999999 999999999 7762 33 3334445434
No 36
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=71.26 E-value=15 Score=33.11 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhhhcCCCcce-EEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhHHHHHHH
Q 014077 95 IVDLCLDRIRKLADNCTGLQGF-LVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 173 (431)
Q Consensus 95 ~~~~~~d~ir~~~E~cD~lqgf-~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~ 173 (431)
+...+.+.|+..+|+ |+ -++.+.+-|+- -.++.++-.|+.+||...+ .+++|+...+..- +-..-.-+.
T Consensus 27 ik~~L~~~i~~lie~-----G~~~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~q~~~W--~~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE-----GVRWFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFENQGNNW--NEANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT-----T--EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB-TTTTS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CCCEEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccchhhcC--CHHHHHHHH
Confidence 345555667777774 43 24444444543 4577788889999996444 6788986433221 112334456
Q ss_pred hhhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhccc
Q 014077 174 SLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 221 (431)
Q Consensus 174 ~l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~ 221 (431)
.|.+.||-++.+..+...... -|..-|+.+..+=..+.+
T Consensus 97 ~il~~aD~v~~vs~~~Y~~~~---------~~~~rn~fMvdhsd~~ia 135 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYSPG---------QLQKRNRFMVDHSDGLIA 135 (177)
T ss_dssp HHHHH-SEEEESSSSB---HH---------HHHHHHHHHHHHSSEEEE
T ss_pred HHHHhCCEEEEccCCCCCCHH---------HHHHHhHHHHhCCCeEEE
Confidence 667788888888765322111 234556666555444443
No 37
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=70.99 E-value=5.2 Score=33.11 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcc
Q 014077 95 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 127 (431)
Q Consensus 95 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 127 (431)
-.+++.+++++.+++.+.-+|++++.+++|||-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 346677788888888888899999999999863
No 38
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=63.25 E-value=11 Score=31.62 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhhhhcCCCcceEEEeeCCCCcc
Q 014077 96 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 127 (431)
Q Consensus 96 ~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 127 (431)
.+++.+++++.+++.+.-+|+.++.++-|||=
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 45667778888888777789999999999873
No 39
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=62.29 E-value=11 Score=31.36 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhhcCCCcceEEEeeCCCCcc
Q 014077 96 VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 127 (431)
Q Consensus 96 ~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 127 (431)
.+++.+++++.+++.+.=+|++++.++-|||=
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp 72 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSP 72 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 45677788888887776789999999999984
No 40
>PLN02847 triacylglycerol lipase
Probab=50.11 E-value=21 Score=38.23 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=42.8
Q ss_pred cccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhh--hhCCcceeEEE
Q 014077 85 ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSV--DYGKKSKLGFT 151 (431)
Q Consensus 85 a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~d--eyp~~~i~~~~ 151 (431)
..|++...+.+.+.+...|++.+++|...+=+++=||||||+ ++.+.-.|++ +||+...++|+
T Consensus 223 H~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGV----AALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 223 HCGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGT----AALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHH----HHHHHHHHhcCCCCCCceEEEec
Confidence 455555555666777778888889998887788899997766 3444444554 46666555555
No 41
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=49.84 E-value=15 Score=31.07 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhhcCC-CcceEEEeeCCCCcccCchH-HHHHHhhhhhCCcceeEEEEec
Q 014077 97 DLCLDRIRKLADNCTG-LQGFLVFNAVGGGTGSGLGS-LLLERLSVDYGKKSKLGFTVYP 154 (431)
Q Consensus 97 ~~~~d~ir~~~E~cD~-lqgf~~~~sl~GGtGSG~gs-~l~e~l~deyp~~~i~~~~v~P 154 (431)
+.+.++|++.+|+++. =+|++++.++ ||+ =+.+ ..++.++. ++..+++..=+|
T Consensus 42 gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs--~~n~e~a~~~l~~--~~~~~v~g~nlP 96 (125)
T TIGR02364 42 GTSPDKIIEAIEKADNEADGVLIFYDL-GSA--VMNAEMAVELLED--EDRDKVHLVDAP 96 (125)
T ss_pred cchHHHHHHHHHHhcCCCCCEEEEEcC-CCc--HhHHHHHHHHhcc--ccccEEEEechh
Confidence 4466788888999866 7899999999 664 2322 34555543 333344443333
No 42
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=47.27 E-value=36 Score=29.24 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=35.4
Q ss_pred cccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcce
Q 014077 87 GHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 147 (431)
Q Consensus 87 G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i 147 (431)
|++.....+...+...+++...++..-+-+++=||+||+ ++..+...++...+.+.+
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~----lA~l~a~~~~~~~~~~~~ 58 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGA----LAGLAGLDLRGRGLGRLV 58 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHH----HHHHHHHHHHhccCCCce
Confidence 555555566666777777766666667777889999665 455555556554333333
No 43
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=46.18 E-value=80 Score=24.14 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhhhc--CCCcceEEEeeCC----CCcccCchHHHHHHhhhhhCCcceeEEEEecC
Q 014077 97 DLCLDRIRKLADNC--TGLQGFLVFNAVG----GGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 155 (431)
Q Consensus 97 ~~~~d~ir~~~E~c--D~lqgf~~~~sl~----GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~ 155 (431)
++....++..+++| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.-.+.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~~~~~ 70 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYRDAEP 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEEE--C
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheeeecCC
Confidence 34455566666655 3567889999998 554 77888888877666666666654443
No 44
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=42.66 E-value=13 Score=29.68 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=38.9
Q ss_pred EeccCcchHHHHHHH-------HHHHHHHhccccceeccccCCCCh--hhHHHHHHHHHHHHHHHHH
Q 014077 358 MISNSTSVAEVFSRI-------DHKFDLMYAKRAFVHWYVGEGMEE--GEFSEAREDLAALEKDYEE 415 (431)
Q Consensus 358 ~l~N~t~i~~~l~~l-------~~~~~~~~~~kAflh~Y~~~Gmee--~eF~Ea~~~l~~l~~~Y~~ 415 (431)
.++|.++|..+|..| ++.-.++--+|+|+ +|+.+ ....||+..|+.|-.+++.
T Consensus 27 sIanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~~~-----E~lQdkL~qi~eAR~AlDalR~eH~~ 88 (96)
T PF12210_consen 27 SIANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRVYY-----EGLQDKLAQIKEARAALDALREEHRE 88 (96)
T ss_dssp -GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888765 45556666677665 56633 6899999999999999974
No 45
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=42.59 E-value=79 Score=31.54 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=56.2
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhHHHH
Q 014077 91 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 170 (431)
Q Consensus 91 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 170 (431)
...+.+.++.+.|+..+ +..+||+|+|+.. | ---++.+++.+-+..++-.++|=+..|....+..-......++
T Consensus 63 mt~~~w~~la~~I~~~~---~~~dG~VVtHGTD--T-meeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~Av 136 (335)
T PRK09461 63 MTPEDWQHIADDIKANY---DDYDGFVILHGTD--T-MAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLNAL 136 (335)
T ss_pred CCHHHHHHHHHHHHHHh---ccCCeEEEeeccc--h-HHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHHHH
Confidence 44667777778887765 4578999999773 3 2467777777655555556677778887654333333333333
Q ss_pred HHHhhhccCceeEEecChhhHH
Q 014077 171 STHSLLEHTDVAVLLDNEAIYD 192 (431)
Q Consensus 171 sl~~l~~~~d~~i~~~N~~l~~ 192 (431)
.+..-.... .|.++=|+.++.
T Consensus 137 ~~A~~~~~~-GV~V~f~~~i~~ 157 (335)
T PRK09461 137 YVAANYPIN-EVTLFFNNKLFR 157 (335)
T ss_pred HHHcCCCCC-eEEEEECCEeec
Confidence 333322233 455554555544
No 46
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=39.59 E-value=1e+02 Score=30.37 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=50.5
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCC-CccchhhHHH
Q 014077 91 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 169 (431)
Q Consensus 91 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 169 (431)
...+.+.++.+.|++.+++ .+||+|+|+.. | --.++..+..+-+..++-.++|=+..|....+ +.....++++
T Consensus 54 ~t~~~~~~la~~i~~~~~~---~~GvVVtHGTD--T-me~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~~Av 127 (313)
T PF00710_consen 54 MTPEDWLELARAIQAALDD---YDGVVVTHGTD--T-MEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLYDAV 127 (313)
T ss_dssp --HHHHHHHHHHHHHHHTT---CSEEEEE--ST--T-HHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh---cCeEEEecCch--H-HHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHHHHH
Confidence 3456677777778777744 88999999773 3 13466666666565556667777888876533 4433344444
Q ss_pred HHHHhhhccCceeEEecChhhH
Q 014077 170 LSTHSLLEHTDVAVLLDNEAIY 191 (431)
Q Consensus 170 lsl~~l~~~~d~~i~~~N~~l~ 191 (431)
....+- +..-.+++|++. ++
T Consensus 128 ~~A~~~-~~~GV~v~f~~~-i~ 147 (313)
T PF00710_consen 128 RVAASP-AGPGVLVVFNGR-IY 147 (313)
T ss_dssp HHHHSG-GTSSEEEEETTE-EE
T ss_pred HHHhcc-cCCceEEEeCCC-cc
Confidence 433333 244455555555 44
No 47
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=37.31 E-value=42 Score=31.04 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=41.2
Q ss_pred CCccccccccchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcce
Q 014077 82 NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSK 147 (431)
Q Consensus 82 nn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i 147 (431)
.....|++..-..+.+.+...++...+++...+=++.=|||||+ +++.+.-.|+..++...+
T Consensus 97 ~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGa----iA~l~a~~l~~~~~~~~i 158 (229)
T cd00519 97 GKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGA----LASLLALDLRLRGPGSDV 158 (229)
T ss_pred cEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHH----HHHHHHHHHHhhCCCCce
Confidence 33456666655667777777888888777767767889999664 556666666665433333
No 48
>PRK13660 hypothetical protein; Provisional
Probab=37.29 E-value=1.6e+02 Score=26.68 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhHHHHHHHh
Q 014077 95 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 174 (431)
Q Consensus 95 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~ 174 (431)
+...+...|+..+|+ .+.= ++.|..=|+- =.++-++-.|+.+||...+ .+++|+...++.- .-..-.-+..
T Consensus 27 IK~aL~~~l~~~~e~--G~~w--fi~ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~q~~~W--~e~~q~~y~~ 97 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEW--VIISGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEEHGENW--NEANQEKLAN 97 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCE--EEECCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccchhhcC--CHHHHHHHHH
Confidence 334455566666663 2332 2322222332 2477788889999996544 4567876432211 1111223345
Q ss_pred hhccCceeEEecChhhHHhhhhcCCCCCCCchhhhHHHHHHHhhcccc
Q 014077 175 LLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTAS 222 (431)
Q Consensus 175 l~~~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~ 222 (431)
+.+.||-++.+....-. ...-|..-|+.+..+=..+.+-
T Consensus 98 i~~~aD~v~~vs~~~y~---------~p~q~~~rn~fmv~~sd~~i~~ 136 (182)
T PRK13660 98 ILKQADFVKSISKRPYE---------SPAQFRQYNQFMLEHTDGALLV 136 (182)
T ss_pred HHHhCCEEEEecCCCCC---------ChHHHHHHHHHHHHccCeEEEE
Confidence 56688998888543210 0112566777776665555443
No 49
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=36.88 E-value=68 Score=33.70 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=25.8
Q ss_pred cceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCC
Q 014077 114 QGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP 156 (431)
Q Consensus 114 qgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~ 156 (431)
.++-+..++|+|+|| ||++|++. .++++++.|..
T Consensus 116 g~iR~~LDvGcG~aS-F~a~l~~r--------~V~t~s~a~~d 149 (506)
T PF03141_consen 116 GGIRTALDVGCGVAS-FGAYLLER--------NVTTMSFAPND 149 (506)
T ss_pred CceEEEEeccceeeh-hHHHHhhC--------CceEEEccccc
Confidence 467899999999984 99999743 56666666653
No 50
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=35.26 E-value=19 Score=34.57 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=24.5
Q ss_pred HHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHH
Q 014077 98 LCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLER 137 (431)
Q Consensus 98 ~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~ 137 (431)
++++++|+.+++=..+ +|+|.|+|++++..|.
T Consensus 2 eil~~l~~~i~~~~pI--------ig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 2 EILDRLRAQIKAGKPI--------IGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHHTT--E--------EEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCce--------EEEeeccchhhHHHHh
Confidence 6788899998875555 5678899999999765
No 51
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=35.04 E-value=1.3e+02 Score=29.80 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=55.6
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhHHHH
Q 014077 91 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 170 (431)
Q Consensus 91 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 170 (431)
...+.+..+.+.|++.+++ .+||+|+|+.. | ---++..+..+-+. ++-.++|=+..|....+..-......++
T Consensus 60 ~t~~~w~~l~~~I~~~~~~---~dGiVVtHGTD--T-meeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~NL~~Al 132 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS---YDGFVITHGTD--T-MEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPLNLYNAV 132 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCcEEEEcCcc--c-HHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3456677777778776653 78999999773 3 24566666655554 5556677778887654333334444444
Q ss_pred HHHhhhc--cCceeEEecChhhHH
Q 014077 171 STHSLLE--HTDVAVLLDNEAIYD 192 (431)
Q Consensus 171 sl~~l~~--~~d~~i~~~N~~l~~ 192 (431)
......+ .....|+|++. ++.
T Consensus 133 ~~A~~~~~~~~gV~V~f~~~-i~~ 155 (323)
T cd00411 133 YVAANYDSRGRGVLVVFNDR-IFR 155 (323)
T ss_pred HHHcCcccCCCeEEEEECCE-Eec
Confidence 4433322 34556666554 443
No 52
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=32.01 E-value=54 Score=32.55 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcc
Q 014077 95 IVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 127 (431)
Q Consensus 95 ~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtG 127 (431)
-.+++.++++..+++.+.-+|++++.++-|||=
T Consensus 41 ~~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP 73 (322)
T PRK15088 41 NAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSP 73 (322)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCH
Confidence 346677778888888777789999999999984
No 53
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=31.23 E-value=53 Score=30.69 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=21.7
Q ss_pred EEeeCCCCcccCchHHHHHHhhhhhCCc
Q 014077 118 VFNAVGGGTGSGLGSLLLERLSVDYGKK 145 (431)
Q Consensus 118 ~~~sl~GGtGSG~gs~l~e~l~deyp~~ 145 (431)
++-+++||+|||= +-+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 5678999999998 56778888888744
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=28.34 E-value=73 Score=30.79 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=31.1
Q ss_pred cCCccccccccchhHHHHHHH-HHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEE
Q 014077 81 ANNFARGHYTIGKEIVDLCLD-RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT 151 (431)
Q Consensus 81 gnn~a~G~~~~g~~~~~~~~d-~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~ 151 (431)
.-.++.||+..+.+-+++.+. +++..+|+++ ++.=.=+-++|.|+| |++-. +...| +..+.++.
T Consensus 28 ~m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~-l~~G~~vLDiGcGwG-~~~~~----~a~~~-g~~v~git 92 (273)
T PF02353_consen 28 TMKYSCAYFDEGDDTLEEAQERKLDLLCEKLG-LKPGDRVLDIGCGWG-GLAIY----AAERY-GCHVTGIT 92 (273)
T ss_dssp T---S----SSTT--HHHHHHHHHHHHHTTTT---TT-EEEEES-TTS-HHHHH----HHHHH---EEEEEE
T ss_pred CCCCCCeecCCchhhHHHHHHHHHHHHHHHhC-CCCCCEEEEeCCCcc-HHHHH----HHHHc-CcEEEEEE
Confidence 345677787777776666665 5777788876 443356778888887 54444 44556 44444443
No 55
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=27.49 E-value=57 Score=27.20 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=35.5
Q ss_pred cccccccch-hHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCC
Q 014077 85 ARGHYTIGK-EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGK 144 (431)
Q Consensus 85 a~G~~~~g~-~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~ 144 (431)
..|++..-. ...+.+.+.|++..++.-...=++.=||||| +++..+.-.+....+.
T Consensus 35 h~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGG----alA~l~a~~l~~~~~~ 91 (140)
T PF01764_consen 35 HSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGG----ALASLAAADLASHGPS 91 (140)
T ss_dssp EHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHH----HHHHHHHHHHHHCTTT
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHH----HHHHHHHHhhhhcccc
Confidence 445544444 5667778888887776554444566789955 4666666666666544
No 56
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=26.98 E-value=55 Score=26.19 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred cceEEEeeCCCCcccCchHHHHHHhhh
Q 014077 114 QGFLVFNAVGGGTGSGLGSLLLERLSV 140 (431)
Q Consensus 114 qgf~~~~sl~GGtGSG~gs~l~e~l~d 140 (431)
.+|-|+.+...|+|+.+-+.|++.|.-
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg~ 46 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLGC 46 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 477999999999998888888887754
No 57
>PF03283 PAE: Pectinacetylesterase
Probab=25.72 E-value=1.5e+02 Score=29.85 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=33.8
Q ss_pred ccccchhHHHHHHHHHHhh-hhhcCCCcceEEEeeCCCCcccCchHHH-HHHhhhhhCC
Q 014077 88 HYTIGKEIVDLCLDRIRKL-ADNCTGLQGFLVFNAVGGGTGSGLGSLL-LERLSVDYGK 144 (431)
Q Consensus 88 ~~~~g~~~~~~~~d~ir~~-~E~cD~lqgf~~~~sl~GGtGSG~gs~l-~e~l~deyp~ 144 (431)
.+-.|....+.+++.|... +.+ .+-+++..+.+||.| +.+ .+.+++.+|.
T Consensus 132 l~frG~~i~~avl~~l~~~gl~~---a~~vlltG~SAGG~g----~~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 132 LYFRGYRILRAVLDDLLSNGLPN---AKQVLLTGCSAGGLG----AILHADYVRDRLPS 183 (361)
T ss_pred eEeecHHHHHHHHHHHHHhcCcc---cceEEEeccChHHHH----HHHHHHHHHHHhcc
Confidence 4456788888888877665 443 344577777766654 444 7889999995
No 58
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=25.36 E-value=48 Score=19.85 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=9.4
Q ss_pred CCCcccCchHHHH
Q 014077 123 GGGTGSGLGSLLL 135 (431)
Q Consensus 123 ~GGtGSG~gs~l~ 135 (431)
+||.|+|++-.++
T Consensus 1 ~gg~g~gf~livV 13 (26)
T TIGR01732 1 GGGYGGGFALIVV 13 (26)
T ss_pred CCccCcchHHHHH
Confidence 5788888876554
No 59
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=24.98 E-value=2e+02 Score=28.76 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=56.9
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCCCccchhhHHHH
Q 014077 91 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVL 170 (431)
Q Consensus 91 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~l 170 (431)
...+.+..+.+.|+...+. .+||+|+|+.. | --.++..+..+-+. ++-.++|=+..|....+..-......++
T Consensus 59 ~tp~~w~~la~~I~~~~~~---~dG~VVtHGTD--T-me~TA~~Ls~~l~~-~kPVVlTGsmrp~~~~~sDg~~NL~~Al 131 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD---YDGFVITHGTD--T-MAYTAAALSFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAV 131 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEccCCc--h-HHHHHHHHHHHcCC-CCCEEEECCCCCCCCcCcchHHHHHHHH
Confidence 3456677777888776653 78999999873 3 24677777765554 5556677778887654333333333333
Q ss_pred HHHhhhcc-----CceeEEecChhhHHh
Q 014077 171 STHSLLEH-----TDVAVLLDNEAIYDI 193 (431)
Q Consensus 171 sl~~l~~~-----~d~~i~~~N~~l~~~ 193 (431)
......+. -..++++-|+.++..
T Consensus 132 ~~A~~~~~~~~i~~~gV~v~f~~~i~~a 159 (336)
T TIGR00519 132 RAATEYIAEVTVCMHGVTLDFNCRLHRG 159 (336)
T ss_pred HHHcCccccccccCceeEEEccCeEeec
Confidence 33332221 224555556666543
No 60
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=24.41 E-value=2.5e+02 Score=27.83 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCC-CccchhhHHHH
Q 014077 92 GKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSVL 170 (431)
Q Consensus 92 g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~l 170 (431)
..+.+.++.+.|+..+.. +..+||+|+|+.. | --.++..+..+-+..++=.++|=+..|....+ +...-.++++.
T Consensus 58 t~~~w~~la~~i~~~~~~-~~~dG~VVtHGTD--T-meeTA~~Ls~~l~~l~kPVVlTGa~rp~~~~~sDg~~NL~~Av~ 133 (323)
T smart00870 58 TPADWLKLAKRINEALAD-DGYDGVVVTHGTD--T-LEETAYFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVR 133 (323)
T ss_pred CHHHHHHHHHHHHHHhcc-CCCCEEEEecCCc--c-HHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCchhHHHHHHHHH
Confidence 345556666666654432 5688999999773 3 24566666665555455556676777876533 33333333333
Q ss_pred HHHhhhc--cCceeEEecChhhHH
Q 014077 171 STHSLLE--HTDVAVLLDNEAIYD 192 (431)
Q Consensus 171 sl~~l~~--~~d~~i~~~N~~l~~ 192 (431)
...-.+ ..-..++| |+.++.
T Consensus 134 -~A~~~~a~~~GV~V~f-~~~i~~ 155 (323)
T smart00870 134 -VAASPEARGRGVLVVF-NDEIHR 155 (323)
T ss_pred -HHcCcccCCCEEEEEE-CCEeee
Confidence 322222 23344444 555554
No 61
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=24.22 E-value=2.6e+02 Score=28.78 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHhhhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCCCC-CccchhhHHH
Q 014077 91 IGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVS-TSVVEPYNSV 169 (431)
Q Consensus 91 ~g~~~~~~~~d~ir~~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~~~-~~~~~~yN~~ 169 (431)
...+.+..+-+.|++.++ +..+||+|+|+.. | --.++..+..+-+..|+=.+++=+..|....+ +...-.++++
T Consensus 120 mtp~~w~~La~~I~~~~~--~~~dGvVVtHGTD--T-M~yTA~aLs~~l~~~~kPVVlTGAqrp~~~~~sDa~~NL~~Av 194 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALK--EGADGVVVAHGTD--T-MAYTAAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAV 194 (404)
T ss_pred CCHHHHHHHHHHHHHHhh--cCCCcEEEecCCh--h-HHHHHHHHHHHhhCCCCCEEEECCCCCCCCCCchHHHHHHHHH
Confidence 345666777777877765 4468999999773 3 24666766665544455556666777876533 4434344444
Q ss_pred HHHHhhhccCceeEEecCh
Q 014077 170 LSTHSLLEHTDVAVLLDNE 188 (431)
Q Consensus 170 lsl~~l~~~~d~~i~~~N~ 188 (431)
..-.. ..+-..++|+++
T Consensus 195 ~~A~~--~~~gV~V~f~g~ 211 (404)
T TIGR02153 195 RAATS--PIAEVTVVMHGE 211 (404)
T ss_pred HHHhC--CCCcEEEEECCc
Confidence 33222 445566777664
No 62
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=23.82 E-value=35 Score=16.08 Aligned_cols=8 Identities=50% Similarity=1.414 Sum_probs=5.8
Q ss_pred ccCCCCCc
Q 014077 238 TNLVPYPR 245 (431)
Q Consensus 238 ~~L~p~p~ 245 (431)
..|+||||
T Consensus 3 sGlI~fpR 10 (11)
T PF08259_consen 3 SGLIPFPR 10 (11)
T ss_pred ccccccCC
Confidence 35788886
No 63
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=22.18 E-value=78 Score=32.92 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=42.0
Q ss_pred cccCCccccccccchhHHHHHHHHHHhhhhhcCCCcc----eEEEeeCCCCcccCchHHHHHHhhh
Q 014077 79 DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQG----FLVFNAVGGGTGSGLGSLLLERLSV 140 (431)
Q Consensus 79 g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqg----f~~~~sl~GGtGSG~gs~l~e~l~d 140 (431)
|++-+|-.+|. ..+..++...++++.+|..-...| ++|-||||| =+.-+.++...+
T Consensus 146 ga~YDwRls~~--~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~----l~~lyFl~w~~~ 205 (473)
T KOG2369|consen 146 GAPYDWRLSYH--NSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGG----LYVLYFLKWVEA 205 (473)
T ss_pred ccccchhhccC--ChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCcc----HHHHHHHhcccc
Confidence 67778888873 357788899999999999988888 788999944 345555555544
No 64
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=21.92 E-value=46 Score=29.64 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=29.8
Q ss_pred CcchHHHHHHHHHHHHHH--hccccceeccccCCCChhhHHHHHHHHHHHHHHHHHHc
Q 014077 362 STSVAEVFSRIDHKFDLM--YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 417 (431)
Q Consensus 362 ~t~i~~~l~~l~~~~~~~--~~~kAflh~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~ 417 (431)
-.-|...+.+|.+-+.+- +..-.||+||++|..||.. .+.++++.++-++
T Consensus 94 Eq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eEe~------l~~~I~d~~~~ag 145 (167)
T COG1528 94 EQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEEEK------LFKTILDKLELAG 145 (167)
T ss_pred HHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcC
Confidence 334555555555554442 4567899999999986642 3445555554443
No 65
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=21.76 E-value=1.1e+02 Score=22.74 Aligned_cols=35 Identities=26% Similarity=0.167 Sum_probs=23.6
Q ss_pred CCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeE
Q 014077 112 GLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 149 (431)
Q Consensus 112 ~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~ 149 (431)
.+..|.+..+. -|-|+|+.|+..+.+.++.+.+..
T Consensus 28 ~i~~~~v~~~~---rg~Gig~~ll~~~~~~~~~~~i~l 62 (79)
T PF13508_consen 28 YIGYLAVDPEY---RGKGIGSKLLNYLLEKAKSKKIFL 62 (79)
T ss_dssp EEEEEEE-GGG---TTSSHHHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECHHH---cCCCHHHHHHHHHHHHcCCCcEEE
Confidence 34444444444 345899999999999998776643
No 66
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=21.76 E-value=89 Score=31.24 Aligned_cols=40 Identities=35% Similarity=0.571 Sum_probs=28.5
Q ss_pred hhhhcCCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEE
Q 014077 106 LADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGF 150 (431)
Q Consensus 106 ~~E~cD~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~ 150 (431)
.++.+..+.|+-...+.|||+| ..+=..+. .||+...+++
T Consensus 168 il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~-~fp~ik~inf 207 (342)
T KOG3178|consen 168 ILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS-KYPHIKGINF 207 (342)
T ss_pred hhhhhcccccCceEEEcCCcHh----HHHHHHHH-hCCCCceeec
Confidence 4667777888999999988776 33333345 8998766665
No 67
>PTZ00489 glutamate 5-kinase; Provisional
Probab=21.65 E-value=4e+02 Score=25.59 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=29.8
Q ss_pred hhhhhCCcceeEEEEecCCCCCCccchhhHHHHHHHhhhccCceeEEecCh
Q 014077 138 LSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNE 188 (431)
Q Consensus 138 l~deyp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~~~~d~~i~~~N~ 188 (431)
..+.|.+..+.+.-+++....-....+..|+.-++..|.+. .+||+-|+
T Consensus 87 y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~--g~VPIine 135 (264)
T PTZ00489 87 YYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH--KVIPIINE 135 (264)
T ss_pred HHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC--CCEEEECC
Confidence 44555555666666776543223334455888888888876 56666544
No 68
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.58 E-value=2.5e+02 Score=25.15 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=39.7
Q ss_pred cccccccchhHHHHHHHHHHhhhhhc--CCCcceEEEeeCCCCcccCchHHHHHHhhhhhCCcceeEEEEecCCC
Q 014077 85 ARGHYTIGKEIVDLCLDRIRKLADNC--TGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQ 157 (431)
Q Consensus 85 a~G~~~~g~~~~~~~~d~ir~~~E~c--D~lqgf~~~~sl~GGtGSG~gs~l~e~l~deyp~~~i~~~~v~P~~~ 157 (431)
..|.+.....-+-.+.+.||+.+|.- +.+.=+++...| |+- =-++-++..|+++||+..+ ..+.|+..
T Consensus 13 elgiF~~k~p~~~~IKkai~~~l~~lleeGleW~litGqL--G~E-~WA~Evv~eLk~eyp~ik~--avitpFe~ 82 (180)
T COG4474 13 ELGIFKDKDPEVSYIKKAIKKKLEALLEEGLEWVLITGQL--GFE-LWAAEVVIELKEEYPHIKL--AVITPFEE 82 (180)
T ss_pred eeccccCCCchHHHHHHHHHHHHHHHHhcCceEEEEeccc--cHH-HHHHHHHHHHHhhCCCeeE--EEEechhh
Confidence 34444333333445556666665542 456666776655 332 3477788899999996544 34567643
Done!