BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014078
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/456 (28%), Positives = 213/456 (46%), Gaps = 50/456 (10%)
Query: 2 ALPVIRSNRSLVRPAEHTPTPSGTLDLSSIDQIPVLRCNARTLHVFKRRGPEPEAAAHVI 61
A+ + ++VRPA+ TP L S++D + V + +++ ++ G A V+
Sbjct: 2 AMKIEVKESTMVRPAQETP--GRNLWNSNVDLV-VPNFHTPSVYFYRPTGSSNFFDAKVL 58
Query: 62 KGALSRALVPYYPLAGRLKESSQGQFQVECSGDGAWFVEASAICTLDSVDYFNDVTSIPY 121
K ALSRALVP+YP+AGRLK G+ ++EC+G+G FVEA + +D D+ + ++
Sbjct: 59 KDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVD--DFGDFAPTLEL 116
Query: 122 DQLLPDSVPKTDG-DVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAAQFLNAVGELAR 180
+L+P +V + G L+ +QVT F CGG +G+ H DG F+N+ ++AR
Sbjct: 117 RRLIP-AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 175
Query: 181 GLEHPRVAPVWHRDFFPST--PQTRLENATLLHNYLPPPMPSYRLEHANID--------- 229
GL+ + P R + PQ + ++ Y PPP + A D
Sbjct: 176 GLD-VTLPPFIDRTLLRARDPPQPQFQHI----EYQPPPALKVSPQTAKSDSVPETAVSI 230
Query: 230 --IPMDQINQLK-RQFYDSTGLKCSAFEIVAASLWRHRTRAISFGPNTQLKLVFFANCRQ 286
+ +QI+ LK + D + S++E++A +WR +A + KL + R
Sbjct: 231 FKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRA 290
Query: 287 LLDPPLPKGFYGNCFFPVTITTTSDWLTQATNVDVVKLIQEAKAELPVEFAKYMNGDFTR 346
L P LP G++GN F T + L K + A +++ A+ M+ D+ R
Sbjct: 291 RLRPSLPPGYFGNVIFTATPIAIAGDLE-------FKPVWYAASKIHDALAR-MDNDYLR 342
Query: 347 NGED--PFAPPL------AYT----TLFISEWGRLGFNQIDYGWGPPVHVVPIQGSSIIP 394
+ D P L A+T L I+ W RL + D+GWG P+ + P I
Sbjct: 343 SALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGP---GGIAY 399
Query: 395 VGIVGSMPLP-KVGFRLMTWSVREAHLKTFLDLITN 429
G+ +P P G + S++ H+K F + +
Sbjct: 400 EGLSFILPSPTNDGSMSVAISLQGEHMKLFQSFLYD 435
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 127/447 (28%), Positives = 211/447 (47%), Gaps = 50/447 (11%)
Query: 11 SLVRPAEHTPTPSGTLDLSSIDQIPVLRCNARTLHVFKRRGPEPEAAAHVIKGALSRALV 70
++VRPA+ TP L S++D + V + +++ ++ G A V+K ALSRALV
Sbjct: 14 TMVRPAQETP--GRNLWNSNVDLV-VPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALV 70
Query: 71 PYYPLAGRLKESSQGQFQVECSGDGAWFVEASAICTLDSVDYFNDVTSIPYDQLLPDSVP 130
P+YP+AGRLK G+ ++EC+G+G FVEA + +D D+ + ++ +L+P +V
Sbjct: 71 PFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVD--DFGDFAPTLELRRLIP-AVD 127
Query: 131 KTDG-DVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAAQFLNAVGELARGLEHPRVAP 189
+ G L+ +QVT F CGG +G+ H DG F+N+ ++ARGL+ + P
Sbjct: 128 YSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLD-VTLPP 186
Query: 190 VWHRDFFPST--PQTRLENATLLHNYLPPPMPSYRLEHANID-----------IPMDQIN 236
R + PQ + ++ Y PPP + + A D + +QI+
Sbjct: 187 FIDRTLLRARDPPQPQFQHI----EYQPPPALAVSPQTAASDSVPETAVSIFKLTREQIS 242
Query: 237 QLK-RQFYDSTGLKCSAFEIVAASLWRHRTRAISFGPNTQLKLVFFANCRQLLDPPLPKG 295
LK + D + S++E++A +WR +A + KL + R L P LP G
Sbjct: 243 ALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPG 302
Query: 296 FYGNCFFPVTITTTSDWLTQATNVDVVKLIQEAKAELPVEFAKYMNGDFTRNGED--PFA 353
++GN F T + L K + A +++ A+ M+ D+ R+ D
Sbjct: 303 YFGNVIFTATPIAIAGDLE-------FKPVWYAASKIHDALAR-MDNDYLRSALDYLELQ 354
Query: 354 PPL------AYT----TLFISEWGRLGFNQIDYGWGPPVHVVPIQGSSIIPVGIVGSMPL 403
P L A+T L I+ W RL + D+GWG P+ + P I G+ +P
Sbjct: 355 PDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGP---GGIAYEGLSFILPS 411
Query: 404 P-KVGFRLMTWSVREAHLKTFLDLITN 429
P G + S++ H+K F + +
Sbjct: 412 PTNDGSMSVAISLQGEHMKLFQSFLYD 438
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 126/447 (28%), Positives = 210/447 (46%), Gaps = 50/447 (11%)
Query: 11 SLVRPAEHTPTPSGTLDLSSIDQIPVLRCNARTLHVFKRRGPEPEAAAHVIKGALSRALV 70
++VRPA+ TP L S++D + V + +++ ++ G A V+K ALSRALV
Sbjct: 14 TMVRPAQETP--GRNLWNSNVDLV-VPNFHTPSVYFYRPTGSSNFFDAKVLKDALSRALV 70
Query: 71 PYYPLAGRLKESSQGQFQVECSGDGAWFVEASAICTLDSVDYFNDVTSIPYDQLLPDSVP 130
P+YP+AGRLK G+ ++EC+G+G FVEA + +D D+ + ++ +L+P +V
Sbjct: 71 PFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVD--DFGDFAPTLELRRLIP-AVD 127
Query: 131 KTDG-DVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAAQFLNAVGELARGLEHPRVAP 189
+ G L+ +QVT F GG +G+ H DG F+N+ ++ARGL+ + P
Sbjct: 128 YSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLD-VTLPP 186
Query: 190 VWHRDFFPST--PQTRLENATLLHNYLPPPMPSYRLEHANID-----------IPMDQIN 236
R + PQ + ++ Y PPP + + A D + +QI+
Sbjct: 187 FIDRTLLRARDPPQPQFQHI----EYQPPPALAVSPQTAASDSVPETAVSIFKLTREQIS 242
Query: 237 QLK-RQFYDSTGLKCSAFEIVAASLWRHRTRAISFGPNTQLKLVFFANCRQLLDPPLPKG 295
LK + D + S++E++A +WR +A + KL + R L P LP G
Sbjct: 243 ALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPPG 302
Query: 296 FYGNCFFPVTITTTSDWLTQATNVDVVKLIQEAKAELPVEFAKYMNGDFTRNGED--PFA 353
++GN F T + L K + A +++ A+ M+ D+ R+ D
Sbjct: 303 YFGNVIFTATPIAIAGDLE-------FKPVWYAASKIHDALAR-MDNDYLRSALDYLELQ 354
Query: 354 PPL------AYT----TLFISEWGRLGFNQIDYGWGPPVHVVPIQGSSIIPVGIVGSMPL 403
P L A+T L I+ W RL + D+GWG P+ + P I G+ +P
Sbjct: 355 PDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGP---GGIAYEGLSFILPS 411
Query: 404 P-KVGFRLMTWSVREAHLKTFLDLITN 429
P G + S++ H+K F + +
Sbjct: 412 PTNDGSMSVAISLQGEHMKLFQSFLYD 438
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 169/404 (41%), Gaps = 57/404 (14%)
Query: 1 MALPVIRSNRSLVRPAEHTPTPSGTLDLSSIDQIPVLRCNARTLHVFKR---RGPEPEAA 57
MA + + + L+ P+ TP +S +DQ+ +L C+ + + +P
Sbjct: 1 MAPQMEKVSEELILPSSPTPQSLKCYKISHLDQL-LLTCHIPFILFYPNPLDSNLDPAQT 59
Query: 58 AHVIKGALSRALVPYYPLAGRLKESSQGQFQVECSGDGAWFVEASAICTLDSVDYFNDVT 117
+ +K +LS+ L +YPLAGR+ +S V+C+ G FVEA L S N V
Sbjct: 60 SQHLKQSLSKVLTHFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQL-SQAIQNVVE 114
Query: 118 SIPYDQLLPDSV---PKTDGDVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAAQFLNA 174
DQ LP + K + + + + ++++ F CGG IG+ H I D L A FLNA
Sbjct: 115 LEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNA 174
Query: 175 VGELARGLEHPRVAPVWH---RDFFP--STPQTRLENATLLHNYLPPPMPSYRLEHANID 229
RG E V P + R F P +TP L +P +
Sbjct: 175 WTATCRG-ETEIVLPNFDLAARHFPPVDNTPSPEL-------------VPDENVVMKRFV 220
Query: 230 IPMDQINQLKRQFYDSTGLKC-SAFEIVAASLWRH---RTRAISFGPNTQLKLVFFANCR 285
++I L+ Q ++ K S ++V A +W+H TRA +G + +V N R
Sbjct: 221 FDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRA-KYGAKNKFVVVQAVNLR 279
Query: 286 QLLDPPLPKGFYGNCFFPVTITTTSDWLTQATNVDVVKLIQEAKAELPV-------EFAK 338
++PPLP GN + ++W + D LI + L E K
Sbjct: 280 SRMNPPLPHYAMGNIATLLFAAVDAEW-----DKDFPDLIGPLRTSLEKTEDDHNHELLK 334
Query: 339 YMNGDFTRNGEDPFAPPLAYTTLFISEWGRLGFNQIDYGWGPPV 382
M + ++ L + W RLGF +D+GWG P+
Sbjct: 335 GMTCLYELEPQE---------LLSFTSWCRLGFYDLDFGWGKPL 369
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 142/348 (40%), Gaps = 37/348 (10%)
Query: 61 IKGALSRALVPYYPLAGRLKESSQGQFQVE-CSGDGAWFVEASAICTLD----------S 109
IK +LS L +YP G+L + E C +G A C LD +
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 110 VDYFNDVTSIPYDQLLPDSVPKTDGDVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAA 169
D F D+ I L +S +D PL +QVT F G IG+T H + D
Sbjct: 125 CDKFYDLVPI-----LGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRF 179
Query: 170 QFLNAVGELARGLEHPR------VAPVWHRDF-FPSTPQTRLENA---TLLHNYLPPPM- 218
FL A +AR + P++ R +P + L+ A + +Y+ +
Sbjct: 180 CFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLA 239
Query: 219 -PSYRLEHANIDIPMDQINQLKRQFYDS--TGLKCSAFEIVAASLWRHRTRAISFGPNTQ 275
PS +L A + INQLK + T S+F + A +W I+ N +
Sbjct: 240 GPSDKL-RATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIW----SCIAKSRNDK 294
Query: 276 LKLVFF-ANCRQLLDPPLPKGFYGNCFFP-VTITTTSDWLTQATNVDVVKLIQEAKAELP 333
L+L F + R + PP+P ++GNC I T+ + + + KLI E +
Sbjct: 295 LQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTL 354
Query: 334 VEFAKYMNGDFTRNGEDPFAPPLAYTTLFISEWGRLGFNQIDYGWGPP 381
++ + D + D + + T ++S +L F +D+GWG P
Sbjct: 355 TDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 145/365 (39%), Gaps = 39/365 (10%)
Query: 61 IKGALSRALVPYYPLAGRLKESSQGQFQVE-CSGDGAWFVEASAICTLD----------S 109
IK +LS L +YP G+L + E C +G A C LD +
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124
Query: 110 VDYFNDVTSIPYDQLLPDSVPKTDGDVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAA 169
D F D+ I L +S +D PL +QVT F G IG+T H + D
Sbjct: 125 CDKFYDLVPI-----LGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRF 179
Query: 170 QFLNAVGELARGLEHPR------VAPVWHRDF-FPSTPQTRLENA---TLLHNYLPPPM- 218
FL A +AR + P++ R +P + L+ A + +Y+ +
Sbjct: 180 CFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLA 239
Query: 219 -PSYRLEHANIDIPMDQINQLKRQFYDS--TGLKCSAFEIVAASLWRHRTRAISFGPNTQ 275
PS +L A + INQLK + T S+F + A +W I+ N +
Sbjct: 240 GPSDKL-RATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIW----SCIAKSRNDK 294
Query: 276 LKLVFF-ANCRQLLDPPLPKGFYGNCFFP-VTITTTSDWLTQATNVDVVKLIQEAKAELP 333
L+L F + R PP+P ++GNC I T+ + + + KLI E +
Sbjct: 295 LQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTL 354
Query: 334 VEFAKYMNGDFTRNGEDPFAPPLAYTTLFISEWGRLGFNQIDYGWGPP--VHVVPIQGSS 391
++ + D + D + T ++S +L F D+GWG P + V I +
Sbjct: 355 TDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPKKLETVSIDHNG 414
Query: 392 IIPVG 396
I +
Sbjct: 415 AISIN 419
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 82/406 (20%), Positives = 158/406 (38%), Gaps = 43/406 (10%)
Query: 11 SLVRPAEHTPTPSG----TLDLSSIDQIPVLRCNARTLHVFKRRGPEPEAAAHVI---KG 63
S++ + P+P TL L+ D + + R + +K P+ +I K
Sbjct: 3 SVIEQCQVVPSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPDFVQTIIPTLKD 62
Query: 64 ALSRALVPYYPLAGRLK--ESSQGQFQVE-CSGDGAWFVEASAICTLDSVDYFNDVTSIP 120
+LS L Y PLAG + + G ++ +G+ + + + + + ++ +
Sbjct: 63 SLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKD 122
Query: 121 YDQLLPDSVPKTDG---DVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAAQFLNAVGE 177
+ +P D + P++ +QVT F G IG T H DG +F+ A
Sbjct: 123 FYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWAL 182
Query: 178 LAR-GLEHPRVAPVWHRDFFPSTPQTRLENATLLHNYLPPPMPSYRLEHANIDI--PMDQ 234
L + G + +A +F P ++ +++ + + Y+ D+ P D+
Sbjct: 183 LNKFGGDEQFLA----NEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVVTPPDK 238
Query: 235 I-NQLKRQFYDSTGLK------------CSAFEIVAASLWRH--RTRAISFGPNTQLKLV 279
+ +D LK ++F + A +W ++ A + +
Sbjct: 239 VRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGXE 298
Query: 280 FF---ANCRQLLDPPLPKGFYGNCFFP-VTITTTSDWLTQATNVDVVKLIQEAKAELPVE 335
FF A+CR +PPLP ++GN V T D + V+LI EA + +
Sbjct: 299 FFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIRKRXKD 358
Query: 336 FAKYMNGDFTRNGEDPFAPPLAYTTLFISEWGRLGFNQIDYGWGPP 381
++G + + + A +L ++ +L D+GWG P
Sbjct: 359 EEWILSGSWFKE----YDKVDAKRSLSVAGSPKLDLYAADFGWGRP 400
>pdb|3C2Q|A Chain A, Crystal Structure Of Conserved Putative LorSDH PROTEIN
From Methanococcus Maripaludis S2
pdb|3C2Q|B Chain B, Crystal Structure Of Conserved Putative LorSDH PROTEIN
From Methanococcus Maripaludis S2
Length = 345
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 273 NTQLKLVFFANCR-QLLDPPLPKGFYGNCFFPVTITTTSDWLTQAT-NVDVVKLI--QEA 328
N + + AN + L D LP GFY P + +W+ A D V ++ +E
Sbjct: 2 NANIPEIENANLKPALKDSVLPDGFYSTTNHPTHVKVNDEWIEVANPKXDAVIVVYPEEK 61
Query: 329 KAELPVEFAKYMNGDFTRNGED 350
+AE V K GDF G +
Sbjct: 62 RAETKV-IRKVKKGDFVLIGHN 82
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 292 LPKGFYGNCFF---PVTITTTSDWLTQATNVDVVKLIQEAKAELPVEFAKYMNGDFTRNG 348
+PK + N F P+ + D L + +D K I A+A FA+Y + D
Sbjct: 272 MPKMNFANVFIGANPLAV----DLLEKMLVLDSDKRITAAQALAHAYFAQYHDPD-DEPV 326
Query: 349 EDPFAPPLAYTTLFISEWGRLGFNQIDYGWGPPV 382
DP+ L L I EW L ++++ PP+
Sbjct: 327 ADPYDQSLESRDLLIDEWKSLTYDEVISFVPPPL 360
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 292 LPKGFYGNCFF---PVTITTTSDWLTQATNVDVVKLIQEAKAELPVEFAKYMNGDFTRNG 348
+PK + N F P+ + D L + +D K I A+A FA+Y + D
Sbjct: 265 MPKMNFANVFIGANPLAV----DLLEKMLVLDSDKRITAAQALAHAYFAQYHDPD-DEPV 319
Query: 349 EDPFAPPLAYTTLFISEWGRLGFNQI 374
DP+ L L I EW L ++++
Sbjct: 320 ADPYDQSLESRDLLIDEWKSLTYDEV 345
>pdb|2JGP|A Chain A, Structure Of The Tycc5-6 Pcp-C Bidomain Of The Tyrocidine
Synthetase Tycc
Length = 520
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 113 FNDVTSIPYDQLLPDSVPKTDGDVEPLVQMQVTQFACGGFVIGLTFCHSICDGLGAAQFL 172
+++VT +L+ V D +V PL+++ + + +V+ HSI DG+ + L
Sbjct: 175 YSEVTEEEARELVSSLVQPFDLEVAPLIRVSLLKIGEDRYVLFTDMHHSISDGVSSGILL 234
Query: 173 NAVGELARGLEHPRVA------PVWHRDFFPS 198
+L +G P + VW ++F S
Sbjct: 235 AEWVQLYQGDVLPELRIQYKDFAVWQQEFSQS 266
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 292 LPKGFYGNCFF---PVTITTTSDWLTQATNVDVVKLIQEAKAELPVEFAKYMNGDFTRNG 348
+PK + N F P+ + D L + +D K I A+A FA+Y + D
Sbjct: 265 MPKMNFANVFIGANPLAV----DLLEKMLVLDSDKRITAAQALAHAYFAQYHDPD-DEPV 319
Query: 349 EDPFAPPLAYTTLFISEWGRLGFNQIDYGWGPPV 382
DPF L I EW L ++++ PP+
Sbjct: 320 ADPFDQSFESRDLLIDEWKSLTYDEVISFVPPPL 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,639,575
Number of Sequences: 62578
Number of extensions: 584023
Number of successful extensions: 1402
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 19
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)