Query 014080
Match_columns 431
No_of_seqs 339 out of 1725
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 05:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtn_A LIM domain-binding prot 99.9 3.3E-25 1.1E-29 204.2 8.1 124 156-291 57-180 (182)
2 2xqn_T Testin, TESS; metal-bin 99.9 1.3E-24 4.5E-29 188.2 8.5 120 158-290 2-123 (126)
3 2rgt_A Fusion of LIM/homeobox 99.9 1.9E-24 6.7E-29 196.8 6.4 124 158-293 5-128 (169)
4 1b8t_A Protein (CRP1); LIM dom 99.9 2.3E-24 7.8E-29 200.2 6.7 133 157-305 5-185 (192)
5 2xjy_A Rhombotin-2; oncoprotei 99.9 3.1E-24 1E-28 186.9 7.0 120 159-290 2-125 (131)
6 1rut_X Flinc4, fusion protein 99.9 7.5E-24 2.5E-28 196.2 5.1 129 157-299 3-135 (188)
7 2cup_A Skeletal muscle LIM-pro 99.8 5E-21 1.7E-25 159.3 7.9 98 157-265 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.7 2.7E-19 9.3E-24 154.6 2.1 106 157-290 3-112 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.7 2.6E-17 9E-22 140.4 5.7 101 158-290 2-104 (114)
10 1iml_A CRIP, cysteine rich int 99.6 4.3E-16 1.5E-20 123.2 5.2 71 160-230 1-72 (76)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.6 3.7E-16 1.3E-20 125.0 3.3 74 156-229 4-77 (81)
12 2ehe_A Four and A half LIM dom 99.6 1.6E-15 5.4E-20 121.5 6.4 78 147-224 2-81 (82)
13 2dar_A PDZ and LIM domain prot 99.6 1.6E-15 5.6E-20 123.8 6.4 68 156-224 22-89 (90)
14 2dlo_A Thyroid receptor-intera 99.6 2.1E-15 7E-20 120.6 6.2 78 146-224 2-80 (81)
15 1x3h_A Leupaxin; paxillin fami 99.6 2.4E-15 8.3E-20 119.7 5.6 77 147-224 2-79 (80)
16 2dj7_A Actin-binding LIM prote 99.6 3.6E-15 1.2E-19 119.6 6.6 68 156-224 12-79 (80)
17 1x68_A FHL5 protein; four-and- 99.6 3E-15 1E-19 118.3 5.8 70 157-226 3-75 (76)
18 2cuq_A Four and A half LIM dom 99.5 3.7E-15 1.3E-19 118.6 5.9 77 147-224 2-79 (80)
19 2cu8_A Cysteine-rich protein 2 99.5 4.1E-15 1.4E-19 117.5 5.7 69 156-224 6-75 (76)
20 2cur_A Skeletal muscle LIM-pro 99.5 3.1E-15 1.1E-19 115.9 4.7 67 157-224 3-69 (69)
21 2d8z_A Four and A half LIM dom 99.5 4.6E-15 1.6E-19 115.1 4.6 67 157-224 3-69 (70)
22 1wyh_A SLIM 2, skeletal muscle 99.5 5.9E-15 2E-19 115.0 4.6 68 157-224 3-71 (72)
23 1x4k_A Skeletal muscle LIM-pro 99.5 7.8E-15 2.7E-19 114.3 5.2 68 157-224 3-71 (72)
24 2d8y_A Eplin protein; LIM doma 99.5 1.3E-14 4.5E-19 118.7 6.7 75 156-230 12-86 (91)
25 1x63_A Skeletal muscle LIM-pro 99.5 1.4E-14 4.7E-19 115.8 6.1 77 147-223 2-80 (82)
26 1x64_A Alpha-actinin-2 associa 99.5 1.9E-14 6.7E-19 117.2 6.8 67 156-223 22-88 (89)
27 1x62_A C-terminal LIM domain p 99.5 6.4E-15 2.2E-19 117.4 3.6 67 156-223 12-78 (79)
28 1g47_A Pinch protein; LIM doma 99.5 1E-14 3.4E-19 115.2 4.5 68 156-223 8-76 (77)
29 1x4l_A Skeletal muscle LIM-pro 99.5 1.4E-14 4.8E-19 113.1 5.0 66 157-222 3-71 (72)
30 2cuq_A Four and A half LIM dom 99.5 1.7E-14 5.7E-19 114.8 5.5 79 205-300 1-79 (80)
31 1nyp_A Pinch protein; LIM doma 99.5 8.9E-15 3E-19 112.3 3.3 64 157-221 3-66 (66)
32 2ehe_A Four and A half LIM dom 99.5 1.6E-14 5.3E-19 115.7 4.7 81 205-300 1-81 (82)
33 2d8x_A Protein pinch; LIM doma 99.5 3.5E-14 1.2E-18 110.2 4.6 66 157-223 3-68 (70)
34 1x6a_A LIMK-2, LIM domain kina 99.5 3.6E-14 1.2E-18 113.3 4.5 80 205-299 1-80 (81)
35 1x3h_A Leupaxin; paxillin fami 99.4 5.4E-14 1.8E-18 111.9 5.0 79 205-300 1-79 (80)
36 1x6a_A LIMK-2, LIM domain kina 99.4 5.2E-14 1.8E-18 112.3 4.8 77 147-224 2-81 (81)
37 2dlo_A Thyroid receptor-intera 99.4 6.7E-14 2.3E-18 111.8 5.3 79 205-300 2-80 (81)
38 2co8_A NEDD9 interacting prote 99.4 1.5E-13 5E-18 110.5 6.9 68 156-223 12-81 (82)
39 2cor_A Pinch protein; LIM doma 99.4 6.1E-14 2.1E-18 112.0 4.3 66 156-223 12-77 (79)
40 1x61_A Thyroid receptor intera 99.4 1E-13 3.6E-18 108.0 4.5 68 157-225 3-71 (72)
41 1wig_A KIAA1808 protein; LIM d 99.4 1.4E-13 5E-18 108.2 4.8 64 157-221 3-67 (73)
42 2egq_A FHL1 protein; LIM domai 99.4 2E-13 6.9E-18 107.7 5.5 70 147-216 2-76 (77)
43 2egq_A FHL1 protein; LIM domai 99.4 1.5E-13 5E-18 108.5 4.6 74 205-290 1-76 (77)
44 1x63_A Skeletal muscle LIM-pro 99.4 2.1E-13 7E-18 109.0 5.0 80 205-299 1-80 (82)
45 1b8t_A Protein (CRP1); LIM dom 99.4 1.4E-13 4.9E-18 127.3 4.3 74 157-230 113-186 (192)
46 2l4z_A DNA endonuclease RBBP8, 99.4 3.8E-13 1.3E-17 116.5 6.1 64 156-219 58-123 (123)
47 3f6q_B LIM and senescent cell 99.3 4.3E-13 1.5E-17 103.9 3.9 63 157-219 9-72 (72)
48 2l3k_A Rhombotin-2, linker, LI 99.3 6.4E-13 2.2E-17 114.6 5.1 72 161-232 10-83 (123)
49 2iyb_E Testin, TESS, TES; LIM 99.3 1.1E-12 3.8E-17 100.6 3.4 59 159-217 2-64 (65)
50 1v6g_A Actin binding LIM prote 99.3 3.2E-12 1.1E-16 102.0 5.7 72 206-291 2-73 (81)
51 1v6g_A Actin binding LIM prote 99.3 3.5E-12 1.2E-16 101.7 5.3 72 147-219 2-75 (81)
52 2jtn_A LIM domain-binding prot 99.3 8.2E-13 2.8E-17 121.2 1.6 122 205-358 43-178 (182)
53 2xqn_T Testin, TESS; metal-bin 99.2 1.2E-12 3.9E-17 112.9 -0.5 112 217-359 1-123 (126)
54 1m3v_A FLIN4, fusion of the LI 99.2 8.5E-13 2.9E-17 113.7 -2.1 109 217-361 3-114 (122)
55 1x68_A FHL5 protein; four-and- 99.1 2.8E-11 9.7E-16 95.4 4.7 73 216-302 2-75 (76)
56 2cup_A Skeletal muscle LIM-pro 99.0 1.2E-10 4.1E-15 96.3 4.4 75 217-306 3-77 (101)
57 2dar_A PDZ and LIM domain prot 99.0 2.4E-10 8.2E-15 93.0 5.8 77 207-300 13-89 (90)
58 1x4k_A Skeletal muscle LIM-pro 99.0 1.8E-10 6.1E-15 89.4 4.6 70 216-300 2-71 (72)
59 1rut_X Flinc4, fusion protein 99.0 4.6E-11 1.6E-15 110.1 0.7 81 147-227 54-139 (188)
60 1wyh_A SLIM 2, skeletal muscle 99.0 1.8E-10 6.2E-15 89.3 3.8 70 216-300 2-71 (72)
61 1wig_A KIAA1808 protein; LIM d 99.0 3E-10 1E-14 89.0 4.9 61 216-290 2-62 (73)
62 2d8z_A Four and A half LIM dom 99.0 2.8E-10 9.7E-15 87.9 4.7 68 216-300 2-69 (70)
63 2cur_A Skeletal muscle LIM-pro 99.0 2.4E-10 8.3E-15 88.1 4.1 67 217-300 3-69 (69)
64 2rgt_A Fusion of LIM/homeobox 99.0 1.4E-11 4.8E-16 111.7 -3.4 111 219-361 6-127 (169)
65 1x4l_A Skeletal muscle LIM-pro 99.0 4.6E-10 1.6E-14 87.2 5.6 68 217-298 3-71 (72)
66 2xjy_A Rhombotin-2; oncoprotei 99.0 3.3E-11 1.1E-15 104.3 -1.4 74 147-220 51-129 (131)
67 1iml_A CRIP, cysteine rich int 99.0 3.9E-10 1.3E-14 88.6 4.3 69 220-304 1-70 (76)
68 2cu8_A Cysteine-rich protein 2 99.0 5.9E-10 2E-14 87.6 5.2 69 216-300 6-75 (76)
69 2l3k_A Rhombotin-2, linker, LI 98.9 2.5E-10 8.6E-15 98.3 2.6 75 214-302 1-77 (123)
70 1a7i_A QCRP2 (LIM1); LIM domai 98.9 3.3E-10 1.1E-14 90.2 3.0 70 218-303 6-75 (81)
71 1nyp_A Pinch protein; LIM doma 98.9 5.6E-10 1.9E-14 85.3 2.7 60 216-290 2-61 (66)
72 2dj7_A Actin-binding LIM prote 98.9 1.6E-09 5.5E-14 86.5 4.9 66 218-300 14-79 (80)
73 1g47_A Pinch protein; LIM doma 98.9 1.1E-09 3.6E-14 86.1 3.6 68 217-299 9-76 (77)
74 1j2o_A FLIN2, fusion of rhombo 98.8 1.1E-09 3.7E-14 93.1 3.3 101 219-359 3-104 (114)
75 2cor_A Pinch protein; LIM doma 98.8 2.6E-09 9E-14 84.9 5.2 65 217-299 13-77 (79)
76 2d8y_A Eplin protein; LIM doma 98.8 2.7E-09 9.1E-14 86.9 4.3 70 217-302 13-82 (91)
77 3f6q_B LIM and senescent cell 98.8 2.6E-09 8.8E-14 82.3 3.2 64 214-290 6-69 (72)
78 1x64_A Alpha-actinin-2 associa 98.8 3.5E-09 1.2E-13 85.8 4.1 65 218-299 24-88 (89)
79 2iyb_E Testin, TESS, TES; LIM 98.8 3.2E-09 1.1E-13 81.1 3.6 60 218-290 1-63 (65)
80 1x61_A Thyroid receptor intera 98.8 5.5E-09 1.9E-13 81.0 4.8 62 217-291 3-64 (72)
81 2d8x_A Protein pinch; LIM doma 98.8 4E-09 1.4E-13 81.4 3.9 63 218-297 4-66 (70)
82 1x62_A C-terminal LIM domain p 98.7 1.9E-09 6.5E-14 85.5 1.5 65 218-299 14-78 (79)
83 2l4z_A DNA endonuclease RBBP8, 98.7 4.6E-09 1.6E-13 90.7 3.9 62 216-290 58-120 (123)
84 2co8_A NEDD9 interacting prote 98.7 1E-08 3.6E-13 82.0 5.3 63 219-296 15-78 (82)
85 1zfo_A LAsp-1; LIM domain, zin 97.2 9.8E-05 3.4E-09 48.4 1.1 29 159-187 3-31 (31)
86 2d3g_P Ubiquitin interacting m 94.0 0.023 7.8E-07 35.1 1.7 23 40-62 2-24 (26)
87 1q0v_A Hydrophilic protein; ha 85.5 0.98 3.4E-05 35.8 4.5 18 39-56 9-26 (81)
88 1zfo_A LAsp-1; LIM domain, zin 85.4 0.21 7.1E-06 32.3 0.5 29 219-259 3-31 (31)
89 4ap4_A E3 ubiquitin ligase RNF 83.7 0.14 4.6E-06 42.8 -1.3 104 187-305 8-123 (133)
90 2lva_A Ubiquitin carboxyl-term 74.0 0.82 2.8E-05 39.0 0.0 23 36-58 90-112 (129)
91 1jm7_B BARD1, BRCA1-associated 62.1 6.5 0.00022 32.3 3.8 45 187-231 23-67 (117)
92 1q0v_A Hydrophilic protein; ha 61.8 3.5 0.00012 32.6 1.9 20 38-57 51-70 (81)
93 2w15_A Zinc metalloproteinase 61.2 5.4 0.00019 36.0 3.4 26 390-415 123-148 (202)
94 1atl_A Atrolysin C; metalloend 60.4 5.7 0.00019 36.0 3.4 25 391-415 124-148 (202)
95 1qua_A Acutolysin-C, hemorrhag 59.3 6.1 0.00021 35.5 3.4 26 390-415 122-147 (197)
96 1kuf_A Atrolysin E, metallopro 58.1 6.6 0.00022 35.6 3.4 25 391-415 126-150 (203)
97 1yp1_A FII; FII hydrolase; 1.9 57.4 6.9 0.00023 35.4 3.4 26 390-415 122-147 (202)
98 1bud_A Protein (acutolysin A); 57.3 7 0.00024 35.1 3.4 26 390-415 120-145 (197)
99 2ect_A Ring finger protein 126 55.6 5.6 0.00019 29.9 2.1 47 259-305 16-62 (78)
100 2djb_A Polycomb group ring fin 55.3 6.1 0.00021 29.3 2.2 46 187-232 16-63 (72)
101 4dd8_A Disintegrin and metallo 55.0 7.3 0.00025 35.4 3.1 24 391-414 121-144 (208)
102 1t1h_A Gspef-atpub14, armadill 54.5 7 0.00024 29.3 2.5 47 184-231 6-55 (78)
103 1iym_A EL5; ring-H2 finger, ub 53.8 11 0.00038 26.0 3.3 46 259-304 6-52 (55)
104 1bor_A Transcription factor PM 53.0 14 0.00047 26.2 3.7 44 187-232 7-50 (56)
105 2i47_A ADAM 17; TACE-inhibitor 52.9 8.4 0.00029 36.8 3.3 26 390-415 171-200 (288)
106 2ysl_A Tripartite motif-contai 52.7 6.8 0.00023 28.9 2.1 45 187-232 21-70 (73)
107 3cqb_A Probable protease HTPX 51.6 7.4 0.00025 31.8 2.3 18 398-415 78-95 (107)
108 2ecy_A TNF receptor-associated 48.6 5.8 0.0002 28.8 1.1 45 187-232 16-63 (66)
109 2dw0_A Catrocollastatin; apopt 47.9 11 0.00037 38.3 3.4 26 390-415 124-149 (419)
110 2ero_A VAP-1, vascular apoptos 47.6 10 0.00035 38.6 3.1 26 390-415 133-158 (427)
111 2e3x_A Coagulation factor X-ac 46.7 11 0.00038 38.3 3.3 26 390-415 126-151 (427)
112 1weo_A Cellulose synthase, cat 44.7 26 0.00087 28.2 4.3 53 156-229 13-68 (93)
113 2ecv_A Tripartite motif-contai 44.6 12 0.00041 28.1 2.4 45 187-232 20-72 (85)
114 2jny_A Uncharacterized BCR; st 44.1 2.1 7.1E-05 32.7 -2.0 40 259-326 11-50 (67)
115 2y43_A E3 ubiquitin-protein li 43.7 8 0.00027 30.5 1.3 45 187-231 23-69 (99)
116 2ct0_A Non-SMC element 1 homol 43.1 16 0.00054 28.1 2.9 16 156-171 12-27 (74)
117 2ddf_A ADAM 17; hydrolase; HET 42.6 10 0.00035 35.4 2.1 20 396-415 173-194 (257)
118 2rr9_C Putative uncharacterize 41.8 41 0.0014 23.2 4.3 28 113-140 17-44 (46)
119 3dwb_A ECE-1, endothelin-conve 41.6 8.1 0.00028 41.6 1.3 15 402-416 500-514 (670)
120 3c37_A Peptidase, M48 family; 41.3 8.2 0.00028 36.3 1.2 25 391-415 83-112 (253)
121 2jsd_A Matrix metalloproteinas 40.8 9.4 0.00032 33.0 1.4 12 403-414 108-119 (160)
122 2kre_A Ubiquitin conjugation f 40.4 16 0.00054 29.4 2.6 47 184-231 27-75 (100)
123 1r55_A ADAM 33; metalloproteas 40.1 18 0.00063 32.8 3.3 16 400-415 133-148 (214)
124 3vk6_A E3 ubiquitin-protein li 39.4 12 0.0004 30.8 1.7 43 189-231 4-49 (101)
125 3l11_A E3 ubiquitin-protein li 38.6 14 0.00049 29.8 2.1 11 259-269 51-61 (115)
126 2c2l_A CHIP, carboxy terminus 38.5 15 0.00052 33.9 2.6 46 185-231 207-255 (281)
127 2yur_A Retinoblastoma-binding 38.4 15 0.0005 27.4 2.0 44 187-231 16-64 (74)
128 1r1h_A Neprilysin; enkephalina 38.4 10 0.00035 40.8 1.5 15 402-416 523-537 (696)
129 2cs3_A Protein C14ORF4, MY039 38.4 21 0.00073 28.2 2.9 34 157-190 13-46 (93)
130 1jm7_A BRCA1, breast cancer ty 38.4 13 0.00046 29.6 1.9 11 206-216 40-50 (112)
131 3oue_A Cytochrome C family pro 38.0 8.1 0.00028 34.1 0.5 91 208-303 56-157 (158)
132 2ecw_A Tripartite motif-contai 37.7 11 0.00039 28.2 1.3 45 187-232 20-72 (85)
133 2kiz_A E3 ubiquitin-protein li 37.5 7.6 0.00026 28.4 0.2 47 259-305 15-61 (69)
134 2rjp_A Adamts-4; metalloprotea 37.4 18 0.0006 35.0 2.9 15 401-415 141-155 (316)
135 1chc_A Equine herpes virus-1 r 37.2 20 0.00067 25.9 2.5 44 188-231 7-52 (68)
136 2egp_A Tripartite motif-contai 36.9 13 0.00043 27.7 1.4 12 220-231 54-65 (79)
137 4ayc_A E3 ubiquitin-protein li 36.9 23 0.00079 29.8 3.2 44 259-305 54-97 (138)
138 3zuk_A Endopeptidase, peptidas 36.9 11 0.00036 41.0 1.3 15 402-416 522-536 (699)
139 1wgm_A Ubiquitin conjugation f 36.8 18 0.00063 28.9 2.4 47 184-231 20-69 (98)
140 2d8t_A Dactylidin, ring finger 36.4 19 0.00066 26.4 2.4 27 205-231 33-61 (71)
141 1t1h_A Gspef-atpub14, armadill 36.4 11 0.00037 28.2 1.0 44 259-305 9-53 (78)
142 2ckl_A Polycomb group ring fin 36.4 13 0.00044 29.8 1.5 44 187-230 16-61 (108)
143 3a1q_C Ubiquitin interaction m 36.3 54 0.0019 22.5 4.3 27 111-137 18-44 (45)
144 4ic3_A E3 ubiquitin-protein li 36.3 19 0.00066 26.9 2.4 41 188-231 26-67 (74)
145 2kr4_A Ubiquitin conjugation f 36.3 17 0.00059 28.1 2.1 47 184-231 12-60 (85)
146 2ovx_A Matrix metalloproteinas 36.1 12 0.00042 32.5 1.4 10 405-414 113-122 (159)
147 2y43_A E3 ubiquitin-protein li 35.3 11 0.00039 29.6 0.9 45 259-305 23-67 (99)
148 3b4r_A Putative zinc metallopr 35.2 15 0.00052 34.0 1.9 21 402-422 47-68 (224)
149 2csy_A Zinc finger protein 183 35.2 14 0.00047 28.0 1.4 43 187-230 16-60 (81)
150 3b8z_A Protein adamts-5; alpha 35.2 19 0.00066 32.6 2.6 15 401-415 139-153 (217)
151 2ckl_A Polycomb group ring fin 35.1 13 0.00045 29.8 1.3 45 259-305 16-60 (108)
152 2jrp_A Putative cytoplasmic pr 34.7 21 0.00073 28.1 2.4 11 160-170 3-13 (81)
153 2ep4_A Ring finger protein 24; 34.6 8.4 0.00029 28.5 0.0 47 259-305 16-62 (74)
154 2ckl_B Ubiquitin ligase protei 34.2 13 0.00043 32.3 1.1 44 187-230 55-101 (165)
155 3k7n_A K-like; SVMP, hydrolase 33.6 25 0.00085 35.4 3.3 25 391-415 127-151 (397)
156 2ecm_A Ring finger and CHY zin 33.5 12 0.00041 25.7 0.7 46 259-304 6-52 (55)
157 3k7l_A Atragin; SVMP, metallop 33.2 23 0.0008 35.9 3.1 25 391-415 132-156 (422)
158 2ecn_A Ring finger protein 141 33.1 13 0.00044 27.1 0.9 44 187-232 16-61 (70)
159 2gtq_A Aminopeptidase N; alani 33.1 11 0.00039 41.8 0.8 13 404-416 288-300 (867)
160 2rjq_A Adamts-5; metalloprotea 32.7 23 0.00078 35.1 2.9 15 401-415 141-155 (378)
161 2xs4_A Karilysin protease; hyd 32.2 16 0.00053 32.0 1.4 10 405-414 117-126 (167)
162 1cge_A Fibroblast collagenase; 32.1 16 0.00054 32.1 1.4 11 404-414 112-122 (168)
163 2ecg_A Baculoviral IAP repeat- 32.1 21 0.0007 26.7 1.9 41 188-231 27-68 (75)
164 3dte_A IRRE protein; radiotole 32.1 29 0.00098 33.8 3.4 28 391-418 84-111 (301)
165 1z5h_A Tricorn protease intera 32.0 11 0.00037 41.4 0.4 14 403-416 259-272 (780)
166 3nw0_A Non-structural maintena 32.0 13 0.00044 34.9 0.9 48 158-232 179-230 (238)
167 2v4b_A Adamts-1; zymogen, prot 31.5 25 0.00086 33.6 2.9 15 401-415 141-155 (300)
168 2hf1_A Tetraacyldisaccharide-1 31.5 22 0.00075 27.0 1.9 40 259-326 9-48 (68)
169 2l0b_A E3 ubiquitin-protein li 31.5 13 0.00044 29.0 0.7 47 259-305 41-87 (91)
170 1hy7_A Stromelysin-1, MMP-3; m 31.0 17 0.00058 32.0 1.4 11 404-414 114-124 (173)
171 2dmi_A Teashirt homolog 3; zin 30.9 19 0.00064 28.3 1.6 13 257-269 79-91 (115)
172 2ecn_A Ring finger protein 141 30.8 19 0.00065 26.2 1.5 43 259-305 16-58 (70)
173 3ebh_A PFA-M1, M1 family amino 30.7 13 0.00046 41.5 0.8 13 404-416 296-308 (889)
174 2gvi_A Conserved hypothetical 30.7 9.9 0.00034 34.8 -0.2 14 203-216 189-202 (204)
175 2ct2_A Tripartite motif protei 30.6 19 0.00064 27.3 1.5 28 205-232 37-69 (88)
176 2d8t_A Dactylidin, ring finger 30.1 18 0.00061 26.6 1.2 45 258-305 15-59 (71)
177 3fl2_A E3 ubiquitin-protein li 29.8 18 0.00062 29.7 1.3 26 206-231 71-99 (124)
178 2jr6_A UPF0434 protein NMA0874 29.7 23 0.00078 26.9 1.8 40 259-326 9-48 (68)
179 4fke_A Aminopeptidase N; zinc 29.6 12 0.0004 41.8 0.1 13 404-416 317-329 (909)
180 2js4_A UPF0434 protein BB2007; 29.4 23 0.00078 27.0 1.7 40 259-326 9-48 (70)
181 2ect_A Ring finger protein 126 29.3 1.2E+02 0.004 22.2 5.8 13 220-232 53-65 (78)
182 1e4u_A Transcriptional repress 29.1 23 0.00079 27.1 1.8 46 187-232 12-63 (78)
183 3lrq_A E3 ubiquitin-protein li 28.7 16 0.00056 28.9 0.8 46 187-232 23-71 (100)
184 3u9w_A Leukotriene A-4 hydrola 28.4 16 0.00056 38.6 1.0 12 405-416 289-300 (608)
185 3b34_A Aminopeptidase N; prote 28.2 16 0.00053 40.9 0.8 13 404-416 313-325 (891)
186 1g25_A CDK-activating kinase a 28.0 18 0.00061 26.0 0.9 46 187-232 4-56 (65)
187 2ysm_A Myeloid/lymphoid or mix 27.9 95 0.0032 25.0 5.5 97 158-290 6-104 (111)
188 1jjd_A Metallothionein, SMTA; 27.9 21 0.00074 26.1 1.3 29 188-216 9-38 (55)
189 4ap4_A E3 ubiquitin ligase RNF 27.7 37 0.0012 27.5 2.9 70 160-232 49-126 (133)
190 3edh_A Bone morphogenetic prot 27.6 20 0.00068 32.7 1.3 11 405-415 89-99 (201)
191 1hv5_A Stromelysin 3; inhibiti 27.4 21 0.00072 31.1 1.4 11 404-414 114-124 (165)
192 2ct2_A Tripartite motif protei 27.3 13 0.00045 28.2 0.0 47 259-305 16-66 (88)
193 3hcs_A TNF receptor-associated 27.3 24 0.00084 30.5 1.8 45 187-232 19-66 (170)
194 1x4j_A Ring finger protein 38; 26.7 11 0.00037 28.1 -0.6 47 258-304 23-69 (75)
195 2pk7_A Uncharacterized protein 26.5 25 0.00084 26.8 1.4 40 259-326 9-48 (69)
196 3lqb_A Hatching enzyme, LOC792 26.5 22 0.00076 32.4 1.4 11 404-414 94-104 (199)
197 2kre_A Ubiquitin conjugation f 26.3 24 0.00081 28.3 1.4 45 258-305 29-73 (100)
198 1rmd_A RAG1; V(D)J recombinati 26.3 27 0.00092 28.2 1.8 45 187-232 24-71 (116)
199 1i76_A MMP-8;, neutrophil coll 26.2 23 0.00079 30.9 1.4 11 404-414 113-123 (163)
200 2djb_A Polycomb group ring fin 26.1 12 0.0004 27.7 -0.4 45 259-305 16-60 (72)
201 2cki_A Ulilysin; metalloprotea 26.0 25 0.00084 33.5 1.7 15 403-418 162-176 (262)
202 3ztg_A E3 ubiquitin-protein li 25.3 15 0.00052 28.3 0.1 43 186-229 13-60 (92)
203 2f42_A STIP1 homology and U-bo 25.3 25 0.00087 31.6 1.5 47 184-231 104-153 (179)
204 3cia_A Cold-active aminopeptid 25.2 22 0.00074 37.6 1.2 12 405-416 296-307 (605)
205 1z6u_A NP95-like ring finger p 25.0 24 0.00081 30.4 1.2 27 206-232 97-126 (150)
206 3e4x_A APC36150; structural ge 24.5 47 0.0016 27.4 3.1 24 402-425 123-151 (157)
207 3py7_A Maltose-binding peripla 24.5 9.6 0.00033 39.1 -1.6 17 158-174 399-415 (523)
208 3hct_A TNF receptor-associated 24.3 26 0.00089 28.5 1.3 45 187-232 19-66 (118)
209 4ayc_A E3 ubiquitin-protein li 24.1 1.1E+02 0.0039 25.3 5.4 24 208-231 74-99 (138)
210 3ayu_A 72 kDa type IV collagen 24.0 27 0.00091 30.7 1.4 11 404-414 115-125 (167)
211 3se6_A Endoplasmic reticulum a 23.9 22 0.00076 40.0 1.1 14 403-416 364-377 (967)
212 1slm_A Stromelysin-1; hydrolas 23.7 27 0.00091 33.0 1.4 11 404-414 196-206 (255)
213 2jne_A Hypothetical protein YF 23.7 36 0.0012 27.8 2.0 10 160-169 33-42 (101)
214 2xq0_A LTA-4 hydrolase, leukot 23.7 24 0.00082 37.6 1.2 13 404-416 296-308 (632)
215 1y93_A Macrophage metalloelast 23.5 28 0.00095 30.2 1.4 12 403-414 108-119 (159)
216 4fgm_A Aminopeptidase N family 23.4 25 0.00084 37.4 1.2 14 403-416 267-280 (597)
217 1wgm_A Ubiquitin conjugation f 23.4 30 0.001 27.6 1.5 44 259-305 23-67 (98)
218 2ea6_A Ring finger protein 4; 22.8 37 0.0013 24.2 1.8 25 206-230 41-67 (69)
219 3g5c_A ADAM 22; alpha/beta fol 22.6 43 0.0015 34.9 2.9 16 400-415 131-146 (510)
220 3knv_A TNF receptor-associated 22.5 14 0.00048 31.6 -0.7 44 187-231 32-78 (141)
221 4axq_A Archaemetzincin; metall 22.4 49 0.0017 29.2 2.8 26 390-415 94-126 (163)
222 2ckl_B Ubiquitin ligase protei 22.2 18 0.00062 31.3 -0.1 45 259-305 55-100 (165)
223 4aw6_A CAAX prenyl protease 1 22.0 37 0.0013 35.2 2.2 18 397-414 323-340 (482)
224 3lq0_A Proastacin; metallopept 22.0 30 0.001 32.4 1.4 11 405-415 122-132 (235)
225 2dmj_A Poly (ADP-ribose) polym 21.7 22 0.00075 29.2 0.3 20 214-233 20-39 (106)
226 2ee8_A Protein ODD-skipped-rel 21.6 17 0.00058 28.0 -0.4 10 259-268 74-83 (106)
227 4gne_A Histone-lysine N-methyl 21.2 2.2E+02 0.0076 23.2 6.4 51 158-229 14-68 (107)
228 2y6d_A Matrilysin; hydrolase; 21.2 33 0.0011 30.3 1.4 10 405-414 117-126 (174)
229 2yho_A E3 ubiquitin-protein li 21.2 43 0.0015 25.5 1.9 41 188-231 20-61 (79)
230 2e6s_A E3 ubiquitin-protein li 20.9 1.1E+02 0.0036 23.5 4.1 47 221-288 28-75 (77)
231 3ahn_A Oligopeptidase, PZ pept 20.8 33 0.0011 35.7 1.6 15 405-419 352-366 (564)
232 3odc_A Poly [ADP-ribose] polym 20.4 25 0.00084 29.3 0.4 18 156-173 16-33 (111)
233 2gvi_A Conserved hypothetical 20.3 26 0.00088 32.0 0.5 30 259-290 173-202 (204)
234 3dka_A DINB-like protein; DINB 20.1 62 0.0021 26.6 2.9 22 402-423 121-147 (155)
235 2xdt_A Endoplasmic reticulum a 20.0 29 0.001 38.5 1.0 14 403-416 302-315 (897)
No 1
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.91 E-value=3.3e-25 Score=204.20 Aligned_cols=124 Identities=23% Similarity=0.542 Sum_probs=109.0
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccccCCcc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~ 235 (431)
....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 5567999999999976567899999999999999999999998776 6899999999999999999999999999753 2
Q ss_pred eEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcc
Q 014080 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (431)
Q Consensus 236 ~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~ 291 (431)
++.+.++ +||..||+|..|++.|..|..|+...+|++||..||.++
T Consensus 135 v~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 135 VRRAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCEETTE----------ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred EEecCCC----------CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHh
Confidence 3456665 469999999999999977888887789999999999864
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=188.19 Aligned_cols=120 Identities=23% Similarity=0.485 Sum_probs=107.6
Q ss_pred CCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccccCCcceE
Q 014080 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 237 (431)
Q Consensus 158 ~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i 237 (431)
..++|.+|+++|..++++.++++.||++||+|..|+++|.+..|+.++|++||+.||.++|+++|.+|+++|.+.+ .+|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 4689999999998788999999999999999999999999989999999999999999999999999999999742 467
Q ss_pred EEecccccccccCCCccc--CCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 238 EYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 238 ~~~~~pfw~~~yCp~h~H--~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
.+.++. || ..||+|..|+++|. +..|+. .+|++||..++.+
T Consensus 81 ~a~~~~----------~H~~~~CF~C~~C~~~l~-~~~f~~-~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 81 TYNNFS----------WHASTECFLCSCCSKCLI-GQKFMP-VEGMVFCSVECKK 123 (126)
T ss_dssp EETTEE----------EESSTTTSBCTTTCCBCT-TSEEEE-ETTEEESSHHHHH
T ss_pred ECCCCE----------eeCCCCCcCcCCCCCccC-CCeeEe-ECCEEcchHHhhh
Confidence 888875 58 99999999999995 777775 6899999966655
No 3
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.90 E-value=1.9e-24 Score=196.78 Aligned_cols=124 Identities=23% Similarity=0.539 Sum_probs=107.4
Q ss_pred CCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccccCCcceE
Q 014080 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLI 237 (431)
Q Consensus 158 ~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i 237 (431)
+.++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .++|++||+.||.++|+++|.+|+++|.+.+ .++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~ 82 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVR 82 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCc-EEE
Confidence 56899999999976567899999999999999999999998775 6899999999999999999999999999753 234
Q ss_pred EEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccC
Q 014080 238 EYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIM 293 (431)
Q Consensus 238 ~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~ 293 (431)
.+.++ +||..||+|..|++.|..|+.|+...+|++||..||.+...
T Consensus 83 ~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 83 RAQDF----------VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp EETTE----------EEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred EcCCc----------eEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 56665 46999999999999997788887778999999999988543
No 4
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.90 E-value=2.3e-24 Score=200.18 Aligned_cols=133 Identities=20% Similarity=0.424 Sum_probs=116.5
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcc---------------
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK--------------- 221 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pk--------------- 221 (431)
.+.++|.+|+++|..++.+.++++.||+.||+|..|+++|.+..|+.++|++||+.||.++|+|+
T Consensus 5 ~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~ 84 (192)
T 1b8t_A 5 GGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84 (192)
T ss_dssp CCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCC
T ss_pred CCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCC
Confidence 35689999999998788899999999999999999999999989999999999999999999887
Q ss_pred ---------------------------------cccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCcc
Q 014080 222 ---------------------------------CDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERME 268 (431)
Q Consensus 222 ---------------------------------C~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l 268 (431)
|.+|+++|.+.. .+.+.++ +||..||+|..|++.|
T Consensus 85 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L 152 (192)
T 1b8t_A 85 GESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGK----------SWHKSCFRCAKCGKSL 152 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTE----------EECTTTCBCTTTCCBC
T ss_pred CcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCC----------ccchhcCCccccCCCC
Confidence 678889998643 5667776 4699999999999999
Q ss_pred CCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 269 PRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 269 ~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
.. ..|+. .+|++||..||.+ .+.++|.+|.+.|
T Consensus 153 ~~-~~~~~-~~g~~yC~~cy~~--~f~~kc~~C~~~~ 185 (192)
T 1b8t_A 153 ES-TTLAD-KDGEIYCKGCYAK--NFGPKGFGFGQGA 185 (192)
T ss_dssp CS-SSEEE-ETTEEEEHHHHHH--HTCCCCCCCCCCC
T ss_pred CC-Ccccc-cCCEEeCHHHHHH--hcCCcCCCCCCcc
Confidence 54 46774 6999999999998 8999999999654
No 5
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.90 E-value=3.1e-24 Score=186.93 Aligned_cols=120 Identities=18% Similarity=0.455 Sum_probs=106.5
Q ss_pred CCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCC--cceeecCCccccccccccccCc--ccccCCCccccCCc
Q 014080 159 YRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTNSA 234 (431)
Q Consensus 159 ~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~pyC~~CY~~~f~p--kC~~C~~~I~~~~~ 234 (431)
.++|.+|+++|..+.++.++++.||+.||+|..|+.+|.. ..|+.++|+|||+.||.++|++ +|.+|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 5789999999975557999999999999999999999963 6799999999999999999999 9999999998743
Q ss_pred ceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 235 GLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 235 ~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
.++.+.++. ||..||+|..|++.|+.|..|+. .+|++||..||.+
T Consensus 81 ~~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~-~~~~~~C~~c~~~ 125 (131)
T 2xjy_A 81 MTMRVKDKV----------YHLECFKCAACQKHFCVGDRYLL-INSDIVCEQDIYE 125 (131)
T ss_dssp EEEEETTEE----------EEGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGHHH
T ss_pred eeEeeCCce----------ECccCcccCCCCCCCCCCCEEEE-ECCEEEcHHHHHH
Confidence 356777775 59999999999999977888886 5899999999976
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.88 E-value=7.5e-24 Score=196.21 Aligned_cols=129 Identities=18% Similarity=0.408 Sum_probs=109.1
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCC--cceeecCCccccccccccccCc--ccccCCCccccC
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTN 232 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~pyC~~CY~~~f~p--kC~~C~~~I~~~ 232 (431)
...++|.+|+++|....++.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|++ +|.+|+++|.+.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 356899999999975557899999999999999999999985 6899999999999999999999 799999999974
Q ss_pred CcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCC
Q 014080 233 SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQ 299 (431)
Q Consensus 233 ~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~ 299 (431)
+ .++.+.++. ||..||+|..|++.|..|..|+. .+|++||..||.+ .+.+.|-
T Consensus 83 e-~~i~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~c~~~--~~~~~~~ 135 (188)
T 1rut_X 83 E-LVMRAQGNV----------YHLKCFTCSTCRNRLVPGDRFHY-INGSLFCEHDRPT--ALINGHL 135 (188)
T ss_dssp S-EEEEETTEE----------ECGGGCBCTTTCCBCCTTCEEEE-ETTEEEEGGGCCT--TTC----
T ss_pred c-EEEEcCCCE----------EeCCCCeECCCCCCCCCCCeEEE-ECCeEECHHHHHH--Hhccccc
Confidence 2 356777774 59999999999999977788875 5899999999988 5566553
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.83 E-value=5e-21 Score=159.29 Aligned_cols=98 Identities=27% Similarity=0.563 Sum_probs=88.4
Q ss_pred CCCCcCCCCCccccc-CceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccccCCcc
Q 014080 157 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~-g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~ 235 (431)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+++|.+|+++|...+ .
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGD-Q 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSS-C
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCC-e
Confidence 467899999999964 78999999999999999999999999888999999999999999999999999999999532 3
Q ss_pred eEEEecccccccccCCCcccCCCCccCCCC
Q 014080 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCE 265 (431)
Q Consensus 236 ~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~ 265 (431)
+|.+.++. ||..||+|..|+
T Consensus 82 ~~~a~~~~----------~H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKGTV----------WHKDCFSGPSSG 101 (101)
T ss_dssp EEESSSCE----------EETTTCCCTTCC
T ss_pred EEEeCCcc----------hHHhCCCCCCCC
Confidence 67787775 599999999996
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=2.7e-19 Score=154.59 Aligned_cols=106 Identities=16% Similarity=0.315 Sum_probs=89.4
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCC--cceeecCCccccccccccccCc--ccccCCCccccC
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHP--KCDVCQNFIPTN 232 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~pyC~~CY~~~f~p--kC~~C~~~I~~~ 232 (431)
...++|++|+++|..+.++.++++.||+.||+|..|+++|.+ ..|+.++|++||+.||.++|++ +|.+|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 457899999999975567999999999999999999999973 5799999999999999999999 999999999974
Q ss_pred CcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 233 SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 233 ~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
. +++.++ ..| .|++|++ .++++||..|+..
T Consensus 83 ~---~~~~g~-----------------------~~l-~g~~f~~-~~~~~yC~~~~~~ 112 (122)
T 1m3v_A 83 D---VMVVGE-----------------------PTL-MGGEFGD-EDERLITRLENTQ 112 (122)
T ss_dssp E---SSSSSS-----------------------SSC-CSCTTCC-TTCCCCEECTTTT
T ss_pred h---eEEcCC-----------------------cCC-CCCccEe-cCCEeEccCcchh
Confidence 2 333222 123 6888875 6899999999986
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=2.6e-17 Score=140.44 Aligned_cols=101 Identities=15% Similarity=0.372 Sum_probs=84.6
Q ss_pred CCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCC--cceeecCCccccccccccccCcccccCCCccccCCcc
Q 014080 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD--VEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (431)
Q Consensus 158 ~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~ 235 (431)
+.++|.+|+++|..+.++.++++.||+.||+|..|+++|.+ ..|+.++|+|||+.||.++|+|+|..|.. +.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~--- 75 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD--- 75 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---
Confidence 45789999999975568999999999999999999999985 57999999999999999999999998862 21
Q ss_pred eEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 236 ~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
+| . |.+.+..|++|++ .++++||..|+..
T Consensus 76 ~~----------------------~---~~~~~~~g~~f~~-~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 76 VM----------------------V---VGEPTLMGGEFGD-EDERLITRLENTQ 104 (114)
T ss_dssp CC----------------------C---SSCSSTTSSBCCC-SSSCCCEEEECTT
T ss_pred ee----------------------E---cCCccCCCCeeEE-cCCEeecchhhhc
Confidence 11 1 3455557888874 7899999999976
No 10
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=4.3e-16 Score=123.15 Aligned_cols=71 Identities=21% Similarity=0.506 Sum_probs=66.8
Q ss_pred CcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccc-cccccccCcccccCCCccc
Q 014080 160 RICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDVCQNFIP 230 (431)
Q Consensus 160 ~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~-~CY~~~f~pkC~~C~~~I~ 230 (431)
|+|.+|+++|..++.+.++++.||+.||+|..|+++|.+..|+..+|.+||+ .||.++|+++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5899999999778999999999999999999999999998999999999999 6999999999999997665
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.59 E-value=3.7e-16 Score=125.00 Aligned_cols=74 Identities=22% Similarity=0.480 Sum_probs=58.0
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCcc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 229 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I 229 (431)
..+.++|.+|+++|..++.+.++++.||+.||+|..|+++|....|+..++++||+.||.++|+|+|.+|++..
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 34678999999999878899999999999999999999999988899999999999999999999999998764
No 12
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=121.50 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCcCCCCCC-CCCCCcCCCCCcccc-cCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 147 GNIFQPFPF-FSGYRICAGCNTEIG-HGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 147 g~~~~p~~~-~~~~~~C~~C~k~I~-~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
|.+|+...+ ....++|.+|+++|. .+.++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 567888877 677889999999997 368889999999999999999999999989999999999999999999999974
No 13
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.6e-15 Score=123.81 Aligned_cols=68 Identities=26% Similarity=0.568 Sum_probs=64.0
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
....++|.+|+++| .++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 22 ~~~~~~C~~C~~~I-~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 22 GKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp TTCCCBBSSSCCBC-CSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCccCCCEe-cceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 56789999999999 589999999999999999999999999889999999999999999999999974
No 14
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.1e-15 Score=120.64 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=70.8
Q ss_pred CCCcCCCCCCCCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeec-CCccccccccccccCccccc
Q 014080 146 SGNIFQPFPFFSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 146 ~g~~~~p~~~~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~-dg~pyC~~CY~~~f~pkC~~ 224 (431)
.+++|+...+....++|++|+++|. ++++.++++.||+.||+|..|+++|.+..|+.. ++++||+.||.++|+|+|++
T Consensus 2 ~g~~yC~~~y~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 2 SSGSSGEGCYVATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCCCSSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred cCCEECHHHhhcCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 4677888877678899999999996 789999999999999999999999998888875 78999999999999999974
No 15
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2.4e-15 Score=119.72 Aligned_cols=77 Identities=27% Similarity=0.523 Sum_probs=70.4
Q ss_pred CCcCCCCCC-CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 147 g~~~~p~~~-~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
+++|+...+ ....++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccchhHHhhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 466888777 667899999999996 68899999999999999999999999888999999999999999999999974
No 16
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.6e-15 Score=119.61 Aligned_cols=68 Identities=32% Similarity=0.738 Sum_probs=62.9
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
..+.++|.+|+++|..++++.++++.||++||+|..|+++|.+ .|+.++++|||+.||.++|+++|.+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 3467899999999987899999999999999999999999986 6889999999999999999999974
No 17
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3e-15 Score=118.34 Aligned_cols=70 Identities=20% Similarity=0.569 Sum_probs=64.7
Q ss_pred CCCCcCCCCCccccc---CceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCC
Q 014080 157 SGYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQ 226 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~---g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~ 226 (431)
...++|.+|+++|.. .+++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+++|..+.
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 357899999999962 3899999999999999999999999988999999999999999999999999875
No 18
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=3.7e-15 Score=118.64 Aligned_cols=77 Identities=19% Similarity=0.424 Sum_probs=70.5
Q ss_pred CCcCCCCCC-CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 147 g~~~~p~~~-~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
|.+|+...+ ....++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|+|+.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 567888877 667899999999995 67899999999999999999999999888999999999999999999999974
No 19
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.1e-15 Score=117.46 Aligned_cols=69 Identities=17% Similarity=0.444 Sum_probs=64.1
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccc-cccccccCccccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHK-HCYKEQHHPKCDV 224 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~-~CY~~~f~pkC~~ 224 (431)
....++|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+..++++||+ .||.++|+|+|.+
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred CCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 34678999999999778999999999999999999999999988899999999999 7999999999974
No 20
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=3.1e-15 Score=115.89 Aligned_cols=67 Identities=25% Similarity=0.579 Sum_probs=62.6
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
.+.++|.+|+++|. ++.+.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 46789999999995 78899999999999999999999999889999999999999999999999974
No 21
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=4.6e-15 Score=115.12 Aligned_cols=67 Identities=24% Similarity=0.534 Sum_probs=62.4
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
.+.++|.+|+++|. ++.+.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 36789999999995 77899999999999999999999999889999999999999999999999974
No 22
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=5.9e-15 Score=115.00 Aligned_cols=68 Identities=26% Similarity=0.597 Sum_probs=63.0
Q ss_pred CCCCcCCCCCcccccC-ceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 157 SGYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g-~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
...++|.+|+++|..+ .++.++++.||+.||+|..|+++|.+..|+..++.+||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 3578999999999764 8899999999999999999999999989999999999999999999999974
No 23
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=7.8e-15 Score=114.31 Aligned_cols=68 Identities=32% Similarity=0.679 Sum_probs=62.9
Q ss_pred CCCCcCCCCCcccccC-ceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccccc
Q 014080 157 SGYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDV 224 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g-~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~ 224 (431)
...++|.+|+++|..+ .++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 3568999999999765 6899999999999999999999999989999999999999999999999974
No 24
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.3e-14 Score=118.67 Aligned_cols=75 Identities=20% Similarity=0.379 Sum_probs=67.4
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIP 230 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~ 230 (431)
..+.++|.+|+++|..++.+.++++.||+.||+|..|+++|....|+..++++||+.||.++|+++|..+..+..
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~ 86 (91)
T 2d8y_A 12 APARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGS 86 (91)
T ss_dssp SSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCC
T ss_pred CCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCC
Confidence 346789999999998778899999999999999999999999888999999999999999999999986555443
No 25
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.4e-14 Score=115.82 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=69.9
Q ss_pred CCcCCCCCC-CCCCCcCCCCCcccccC-ceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 014080 147 GNIFQPFPF-FSGYRICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 147 g~~~~p~~~-~~~~~~C~~C~k~I~~g-~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~ 223 (431)
+++|+...+ ....++|.+|+++|..+ .++.++++.||++||+|..|+++|.+..|+..++++||+.||.++|+|+|.
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 2 SSGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CCcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 467888777 66789999999999764 679999999999999999999999998999999999999999999999986
No 26
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.9e-14 Score=117.15 Aligned_cols=67 Identities=21% Similarity=0.521 Sum_probs=62.4
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~ 223 (431)
....++|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+..++.+||+.||.++|+|+|.
T Consensus 22 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 22 AQRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CCSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CCcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 456789999999996 7889999999999999999999999988899999999999999999999986
No 27
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=6.4e-15 Score=117.43 Aligned_cols=67 Identities=19% Similarity=0.463 Sum_probs=62.0
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~ 223 (431)
....++|.+|+++|. ++++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 12 AQKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 346789999999996 6899999999999999999999999988899999999999999999999875
No 28
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1e-14 Score=115.18 Aligned_cols=68 Identities=18% Similarity=0.378 Sum_probs=61.0
Q ss_pred CCCCCcCCCCCccccc-CceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 014080 156 FSGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~-g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~ 223 (431)
..+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+|+|.
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 3467899999999974 5678999999999999999999999988899999999999999999999996
No 29
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.4e-14 Score=113.12 Aligned_cols=66 Identities=32% Similarity=0.700 Sum_probs=61.0
Q ss_pred CCCCcCCCCCccccc---CceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCccc
Q 014080 157 SGYRICAGCNTEIGH---GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKC 222 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~---g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC 222 (431)
.+.++|.+|+++|.. ..++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 367899999999973 388999999999999999999999999899999999999999999999986
No 30
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.49 E-value=1.7e-14 Score=114.85 Aligned_cols=79 Identities=18% Similarity=0.462 Sum_probs=68.7
Q ss_pred CCccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccC
Q 014080 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (431)
Q Consensus 205 dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC 284 (431)
+|+|||+.||.++++++|.+|+++|.+. .+.+.++ .||..||+|..|++.| .+..|+. .+|++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~~-~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQ----------PWHRECLVCTGCQTPL-AGQQFTS-RDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSS----------EECTTTCBCSSSCCBC-TTCCEEE-CSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCc----------hhhhhhCCcccCCCcC-CCCeeEe-ECCEEEC
Confidence 5899999999999999999999999874 5777776 4699999999999999 4567775 7999999
Q ss_pred cchhhcccCCCCCCCc
Q 014080 285 LECLDSAIMDTHECQP 300 (431)
Q Consensus 285 ~~C~~~~v~~~~~C~~ 300 (431)
..||.+ .+.++|++
T Consensus 66 ~~cy~~--~f~~~c~s 79 (80)
T 2cuq_A 66 VACFGE--LFASGPSS 79 (80)
T ss_dssp HHHHHH--HTTCSTTC
T ss_pred HHHHHH--HcCCCCCC
Confidence 999998 78888864
No 31
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.49 E-value=8.9e-15 Score=112.34 Aligned_cols=64 Identities=27% Similarity=0.545 Sum_probs=60.0
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcc
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPK 221 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pk 221 (431)
...++|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+..+|.+||+.||.++|+|+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 35789999999996 89999999999999999999999999989999999999999999999885
No 32
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=115.65 Aligned_cols=81 Identities=27% Similarity=0.563 Sum_probs=68.0
Q ss_pred CCccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccC
Q 014080 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (431)
Q Consensus 205 dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC 284 (431)
+|+|||+.||.++|+++|.+|+++|.+.. .++.+.++ .||..||+|..|++.|. +..|+. .+|++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~~-~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-RELFYEDR----------HFHEGCFRCCRCQRSLA-DEPFTC-QDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-CBCCCSSC----------CCBTTTSBCTTTCCBCS-SCCEEE-ETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-EEEEeCCc----------cccccCCeecCCCCccC-CCccEe-eCCEEEC
Confidence 58999999999999999999999999421 25566666 46999999999999995 667764 6899999
Q ss_pred cchhhcccCCCCCCCc
Q 014080 285 LECLDSAIMDTHECQP 300 (431)
Q Consensus 285 ~~C~~~~v~~~~~C~~ 300 (431)
..||.+ .+.++|+.
T Consensus 68 ~~c~~~--~~~~~C~~ 81 (82)
T 2ehe_A 68 NDCYCS--AFSSGPSS 81 (82)
T ss_dssp TTTSSC--CGGGSSCC
T ss_pred HHHHhh--hcCCCCCC
Confidence 999988 78888864
No 33
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=3.5e-14 Score=110.24 Aligned_cols=66 Identities=32% Similarity=0.689 Sum_probs=61.1
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~ 223 (431)
.+.++|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 35789999999996 8899999999999999999999999998999999999999999999988764
No 34
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.45 E-value=3.6e-14 Score=113.25 Aligned_cols=80 Identities=13% Similarity=0.237 Sum_probs=67.0
Q ss_pred CCccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccC
Q 014080 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (431)
Q Consensus 205 dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC 284 (431)
++.|||+.||.++|+++|.+|+++|.+. .+.+.++. ||..||+|..|++.|..|..|+...+|++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEFK----------YHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTCC----------BCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCce----------eccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4689999999999999999999999954 56677764 6999999999999997677776447999999
Q ss_pred cchhhcccCCCCCCC
Q 014080 285 LECLDSAIMDTHECQ 299 (431)
Q Consensus 285 ~~C~~~~v~~~~~C~ 299 (431)
..||.+ .+++.|.
T Consensus 68 ~~c~~~--~~~~~~s 80 (81)
T 1x6a_A 68 GKCHNE--VVSGPSS 80 (81)
T ss_dssp HHHHHH--HHCTTSC
T ss_pred HHHHHH--HhcCCCC
Confidence 999988 5555554
No 35
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=5.4e-14 Score=111.87 Aligned_cols=79 Identities=15% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccC
Q 014080 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (431)
Q Consensus 205 dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC 284 (431)
+|++||+.||.++|+++|.+|+++|.+. .|.+.++. ||..||+|..|++.|.. ..|+. .+|++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~~----------~H~~CF~C~~C~~~L~~-~~~~~-~~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDTV----------WHPECFVCGDCFTSFST-GSFFE-LDGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTEE----------ECTTTCBCSSSCCBSCS-SCCEE-SSSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCCe----------EecCcCChhhCCCCCCC-CcEEe-ECCEEEC
Confidence 5789999999999999999999999974 57777774 69999999999999954 46775 6899999
Q ss_pred cchhhcccCCCCCCCc
Q 014080 285 LECLDSAIMDTHECQP 300 (431)
Q Consensus 285 ~~C~~~~v~~~~~C~~ 300 (431)
..||.+ .+.++|++
T Consensus 66 ~~~y~~--~f~~~C~~ 79 (80)
T 1x3h_A 66 ELHYHH--RRGSGPSS 79 (80)
T ss_dssp HHHHHH--HHSSSCCC
T ss_pred HHHHHH--HcCCCCCC
Confidence 999998 78888874
No 36
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=5.2e-14 Score=112.31 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=67.9
Q ss_pred CCcCCCCCC-CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCC-ccee-ecCCccccccccccccCcccc
Q 014080 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITD-VEFS-MSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 147 g~~~~p~~~-~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~-~~F~-~~dg~pyC~~CY~~~f~pkC~ 223 (431)
++.|+...+ ....++|.+|+++|. ++++.++++.||++||+|..|+++|.. ..|. ..+++|||+.||.++|++.|.
T Consensus 2 ~~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 2 SSGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CCccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 456888777 668899999999996 889999999999999999999999974 5677 489999999999999999886
Q ss_pred c
Q 014080 224 V 224 (431)
Q Consensus 224 ~ 224 (431)
+
T Consensus 81 g 81 (81)
T 1x6a_A 81 G 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=6.7e-14 Score=111.80 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccC
Q 014080 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (431)
Q Consensus 205 dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC 284 (431)
+|+|||+.||. ++.++|.+|+++|.+. ++.+.++. ||..||+|..|++.|. +..|+...+|++||
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~~~~g~~yC 66 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGKA----------YHPGCFTCVVCHRGLD-GIPFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTEE----------ECTTTCBCSSSCCBCT-TSCEECCTTCCCEE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCcc----------ccHHhcCcccCCCccC-CCeeEECCCCEEEC
Confidence 68999999999 7999999999999963 67777774 6999999999999994 66776534789999
Q ss_pred cchhhcccCCCCCCCc
Q 014080 285 LECLDSAIMDTHECQP 300 (431)
Q Consensus 285 ~~C~~~~v~~~~~C~~ 300 (431)
..||.+ .+.++|++
T Consensus 67 ~~cy~~--~f~~~C~~ 80 (81)
T 2dlo_A 67 IEDFHR--KFASGPSS 80 (81)
T ss_dssp HHHHHH--HTTSSSCC
T ss_pred HHHHHH--HhcCcCCC
Confidence 999998 78899874
No 38
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.5e-13 Score=110.53 Aligned_cols=68 Identities=19% Similarity=0.386 Sum_probs=61.0
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCccee--ecCCccccccccccccCcccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFS--MSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~--~~dg~pyC~~CY~~~f~pkC~ 223 (431)
..+.++|.+|+++|..++.+.++++.||+.||+|..|+++|....|+ ..++++||+.||.++|++.+.
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~ 81 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPSS 81 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCCC
Confidence 44678999999999878889999999999999999999999998887 479999999999999887654
No 39
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=6.1e-14 Score=111.99 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=60.4
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCD 223 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~ 223 (431)
..+.++|.+|+++|. +++|.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+|++.
T Consensus 12 ~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 12 GLGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHHTTSCCSSC
T ss_pred ccCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHHHhCCCCCC
Confidence 456789999999996 889999999999999999999999998755 889999999999999999775
No 40
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1e-13 Score=108.00 Aligned_cols=68 Identities=24% Similarity=0.575 Sum_probs=59.9
Q ss_pred CCCCcCCCCCccccc-CceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccC
Q 014080 157 SGYRICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVC 225 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~-g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C 225 (431)
.+.++|.+|+++|.. +.++.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|. +|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCCC
Confidence 467899999999975 368999999999999999999999998889999999999999998873 55543
No 41
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=1.4e-13 Score=108.15 Aligned_cols=64 Identities=28% Similarity=0.594 Sum_probs=57.8
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCC-CcceeecCCccccccccccccCcc
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPK 221 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~-~~~F~~~dg~pyC~~CY~~~f~pk 221 (431)
.+.++|++|+++|. +++|.++++.||++||+|..|+++|. +..|+..++++||..||.+++...
T Consensus 3 ~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 36789999999995 78999999999999999999999998 778999999999999999877653
No 42
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=107.73 Aligned_cols=70 Identities=21% Similarity=0.487 Sum_probs=62.7
Q ss_pred CCcCCCCCC-CCCCCcCCCCCccccc----CceEeecCccccCCCcccCCCCCCCCCcceeecCCcccccccccc
Q 014080 147 GNIFQPFPF-FSGYRICAGCNTEIGH----GRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE 216 (431)
Q Consensus 147 g~~~~p~~~-~~~~~~C~~C~k~I~~----g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~ 216 (431)
+++|+...+ ....++|++|+++|.. ..++.++++.||+.||+|..|+++|.+..|+.++++|||+.||.+
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 456888777 6778999999999973 388999999999999999999999999889999999999999975
No 43
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=108.53 Aligned_cols=74 Identities=20% Similarity=0.452 Sum_probs=62.1
Q ss_pred CCccccccccccccCcccccCCCccccC--CcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcc
Q 014080 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTN--SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRK 282 (431)
Q Consensus 205 dg~pyC~~CY~~~f~pkC~~C~~~I~~~--~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~ 282 (431)
+++|||+.||.++|+++|.+|+++|.+. ....+.+.++ +||..||+|..|++.|. +..|+. .+|++
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~f~~-~~~~~ 68 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQ----------SWHDYCFHCKKCSVNLA-NKRFVF-HQEQV 68 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTE----------EEETTTCBCSSSCCBCT-TSCCCE-ETTEE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcc----------eeCcccCEehhcCCCCC-CCccEe-ECCEE
Confidence 4789999999999999999999999961 1236777777 46999999999999994 566764 68999
Q ss_pred cCcchhhc
Q 014080 283 LCLECLDS 290 (431)
Q Consensus 283 yC~~C~~~ 290 (431)
||..||.+
T Consensus 69 yC~~cy~~ 76 (77)
T 2egq_A 69 YCPDCAKK 76 (77)
T ss_dssp CCHHHHHH
T ss_pred EChHHhcc
Confidence 99999965
No 44
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=2.1e-13 Score=108.97 Aligned_cols=80 Identities=16% Similarity=0.392 Sum_probs=66.7
Q ss_pred CCccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccC
Q 014080 205 GNRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLC 284 (431)
Q Consensus 205 dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC 284 (431)
++.|||+.||.++++++|.+|+++|...+ .++.+.++ .||..||+|..|++.|.. ..|+. .+|++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~~-~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGT----------VWHKDCFTCSNCKQVIGT-GSFFP-KGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSC----------EEETTTCCCSSSCCCCTT-SCEEE-ETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcc----------ccccccCchhhCCCccCC-CccEe-eCCEEEC
Confidence 46899999999999999999999999542 25677776 469999999999999954 46765 6899999
Q ss_pred cchhhcccCCCCCCC
Q 014080 285 LECLDSAIMDTHECQ 299 (431)
Q Consensus 285 ~~C~~~~v~~~~~C~ 299 (431)
..||.+ .+.++|.
T Consensus 68 ~~cy~~--~f~~~~~ 80 (82)
T 1x63_A 68 VTCHET--KFASGPS 80 (82)
T ss_dssp HHHHHH--HTSCCCS
T ss_pred HHHHHH--HhCCCCC
Confidence 999988 6777765
No 45
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.38 E-value=1.4e-13 Score=127.33 Aligned_cols=74 Identities=22% Similarity=0.447 Sum_probs=69.1
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccc
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIP 230 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~ 230 (431)
.+.++|.+|+++|..++.|.++++.||+.||+|..|+++|.+..|+..++++||+.||.++|+++|.+|+++|-
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~~g 186 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAG 186 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCCCC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCccc
Confidence 35678999999997778899999999999999999999999888999999999999999999999999999864
No 46
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.37 E-value=3.8e-13 Score=116.51 Aligned_cols=64 Identities=22% Similarity=0.541 Sum_probs=57.5
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCC--CcceeecCCccccccccccccC
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPIT--DVEFSMSGNRPYHKHCYKEQHH 219 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~--~~~F~~~dg~pyC~~CY~~~f~ 219 (431)
....++|.+|+++|....++.++++.||+.||+|..|+++|. +..|+.++|++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 556799999999997555799999999999999999999997 4679999999999999998875
No 47
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.34 E-value=4.3e-13 Score=103.86 Aligned_cols=63 Identities=19% Similarity=0.438 Sum_probs=56.9
Q ss_pred CCCCcCCCCCcccccCc-eEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccccC
Q 014080 157 SGYRICAGCNTEIGHGR-YLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH 219 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~-~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~ 219 (431)
...++|.+|+++|..++ ++.++++.||+.||+|..|+++|.+..|+..+|++||+.||.++|+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 46789999999997554 5789999999999999999999998889999999999999998874
No 48
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.34 E-value=6.4e-13 Score=114.64 Aligned_cols=72 Identities=15% Similarity=0.305 Sum_probs=65.5
Q ss_pred cCCCCCccccc-CceEeecCccccCCCcccCCCCCCC-CCcceeecCCccccccccccccCcccccCCCccccC
Q 014080 161 ICAGCNTEIGH-GRYLSCMEAFWHPECFRCHSCNLPI-TDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 232 (431)
Q Consensus 161 ~C~~C~k~I~~-g~~v~algk~wHp~CF~C~~C~~~L-~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~ 232 (431)
+|.+|+++|.. +.++.++++.||+.||+|..|+++| .+..|+..++.+||+.||.++|+++|..|+..+.+.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGG 83 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSCCS
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCccC
Confidence 89999999975 3678999999999999999999999 456799999999999999999999999999887754
No 49
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=100.61 Aligned_cols=59 Identities=24% Similarity=0.562 Sum_probs=54.3
Q ss_pred CCcCCCCCccccc-CceEeecCcccc--CCCcccCCCCCCCCCcceeecCCcccc-ccccccc
Q 014080 159 YRICAGCNTEIGH-GRYLSCMEAFWH--PECFRCHSCNLPITDVEFSMSGNRPYH-KHCYKEQ 217 (431)
Q Consensus 159 ~~~C~~C~k~I~~-g~~v~algk~wH--p~CF~C~~C~~~L~~~~F~~~dg~pyC-~~CY~~~ 217 (431)
.++|.+|+++|.. ++.+.++++.|| +.||+|..|+++|.+..|+.++|+||| ..||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 5689999999976 489999999999 999999999999999999999999999 8998764
No 50
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.28 E-value=3.2e-12 Score=101.96 Aligned_cols=72 Identities=14% Similarity=0.291 Sum_probs=59.8
Q ss_pred CccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCc
Q 014080 206 NRPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL 285 (431)
Q Consensus 206 g~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~ 285 (431)
+.+||+.||.++|+++|..|+++|.+. ++.+.++. ||..||+|..|+++|..+..|. +.++.+||.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~~----------wH~~CF~C~~C~~~L~~~~~~~-~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGKT----------YHPDCFVCAVCRLPFPPGDRVT-FNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTEE----------ECTTTSSCSSSCCCCCSSSCEE-EETTEEEEH
T ss_pred CCCcchHHHHhHhCCcCccccCEeccc---eEEECCce----------eCccCCccccCCCCCCCCCEEE-eCCCCEECh
Confidence 578999999999999999999999964 67787774 6999999999999996555554 445457999
Q ss_pred chhhcc
Q 014080 286 ECLDSA 291 (431)
Q Consensus 286 ~C~~~~ 291 (431)
.|+.+.
T Consensus 68 ~C~~~~ 73 (81)
T 1v6g_A 68 KCSLPV 73 (81)
T ss_dssp HHHSCC
T ss_pred hhhccc
Confidence 999763
No 51
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.26 E-value=3.5e-12 Score=101.72 Aligned_cols=72 Identities=19% Similarity=0.370 Sum_probs=60.7
Q ss_pred CCcCCCCCC-CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCC-ccccccccccccC
Q 014080 147 GNIFQPFPF-FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQHH 219 (431)
Q Consensus 147 g~~~~p~~~-~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg-~pyC~~CY~~~f~ 219 (431)
+++|+...+ ....++|.+|+++|. ++++.++++.||+.||+|..|+++|....|+..++ .+||..||.+++.
T Consensus 2 ~~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 2 SSGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 357888877 778899999999996 88999999999999999999999998666655555 4699999976543
No 52
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.26 E-value=8.2e-13 Score=121.24 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=88.9
Q ss_pred CCccccccccc---cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCc
Q 014080 205 GNRPYHKHCYK---EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGR 281 (431)
Q Consensus 205 dg~pyC~~CY~---~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~ 281 (431)
++..||..++. ....++|.+|+++|.+.. ++.+.++ .||..||+|..|++.|. +..|. .+|+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~--~~g~ 107 (182)
T 2jtn_A 43 DDEGGSGGHMGSGGTPEIPMCAGCDQHILDRF--ILKALDR----------HWHSKCLKCSDCHVPLA-ERCFS--RGES 107 (182)
T ss_dssp SSSCSSSSSCCCCCCCSCCBCBTSSSBCCCSE--EEEETTE----------EECSSTTSCTTTCCCCS-SCCEE--ETTE
T ss_pred ccccccccccccCCCCCCCcCccCCCCccCce--eEEecCC----------eEccccCccCCCCCccC-CCcee--ECCE
Confidence 45567777765 456789999999999742 4667776 46999999999999995 44453 5999
Q ss_pred ccCcchhhcccCCCCCCCcccHHHHHHHhhccccccccccchhhhHHHHHHHhcCCc---------C--CccCCcccCCc
Q 014080 282 KLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK---------N--GHHHLPETRGL 350 (431)
Q Consensus 282 ~yC~~C~~~~v~~~~~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~~~ALn~~~~~e~---------~--g~~~~~e~rGl 350 (431)
+||..||.+ .+.++|..|.++|.. .+.- ..|+++.||... . |...+...+|.
T Consensus 108 ~yC~~~y~~--~f~~kC~~C~~~I~~----------~~~v-----~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~ 170 (182)
T 2jtn_A 108 VYCKDDFFK--RFGTKCAACQLGIPP----------TQVV-----RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSR 170 (182)
T ss_dssp EECHHHHHH--TTSCCCTTTCCCCCS----------SCCC-----CEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSC
T ss_pred eeecCcccc--ccccccccCCCccCC----------CceE-----EecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCE
Confidence 999999998 899999999987731 1110 236788888752 1 22223456788
Q ss_pred ccccccce
Q 014080 351 CLSEEQTV 358 (431)
Q Consensus 351 ~~~E~~~~ 358 (431)
.||..+|.
T Consensus 171 ~yC~~cy~ 178 (182)
T 2jtn_A 171 LVCKADYE 178 (182)
T ss_dssp EECHHHHH
T ss_pred EECHHHHH
Confidence 88887774
No 53
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.20 E-value=1.2e-12 Score=112.90 Aligned_cols=112 Identities=16% Similarity=0.238 Sum_probs=84.1
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCC
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~ 296 (431)
+++++|.+|+++|.+.. ++.+.++. ||..||+|..|++.|. +..|+. .+|++||..||.+ .+.+
T Consensus 1 ~~~~~C~~C~~~I~~~~--~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~cy~~--~~~~ 64 (126)
T 2xqn_T 1 SEKPRCAGCDELIFSNE--YTQAENQN----------WHLKHFCCFDCDSILA-GEIYVM-VNDKPVCKPCYVK--NHAV 64 (126)
T ss_dssp -CCCBBTTTSSBCCSSC--EEEETTEE----------ECGGGSBCTTTCCBCT-TSEEEE-ETTEEEEHHHHHH--HSCC
T ss_pred CcCCCCccCCCEeCCce--EEeeCCCC----------ccCCCCCcCCCCCCCC-cCEEEe-ECCEEechHHhCc--CcCc
Confidence 36789999999999643 67787774 6999999999999994 667775 6999999999998 7899
Q ss_pred CCCcccHHHHHHHhhccccccccccchhhhHHHHHHHhc--CCc---------CCccCCcccCCccccccccee
Q 014080 297 ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAME--GEK---------NGHHHLPETRGLCLSEEQTVT 359 (431)
Q Consensus 297 ~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~~~ALn~~~~--~e~---------~g~~~~~e~rGl~~~E~~~~~ 359 (431)
+|..|.++|.. .... +.|+++.|| .+. .....+...+|.+||..++..
T Consensus 65 ~C~~C~~~I~~---------~~~~------~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~~~ 123 (126)
T 2xqn_T 65 VCQGCHNAIDP---------EVQR------VTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 123 (126)
T ss_dssp BCTTTCSBCCT---------TSCE------EEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHHHH
T ss_pred cCcccCCcCCc---------CceE------EECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHhhh
Confidence 99999988841 0111 246788888 531 122334567888888877753
No 54
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=8.5e-13 Score=113.69 Aligned_cols=109 Identities=11% Similarity=0.036 Sum_probs=81.4
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccC-CCCceEEccCCcccCcchhhcccCCC
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDSAIMDT 295 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~-~g~~f~~l~dG~~yC~~C~~~~v~~~ 295 (431)
++.++|.+|+++|.+.. ++.+.++. ||..||+|..|++.|. .+..|+. .+|++||..||.+ .+.
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~~----------wH~~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~--~f~ 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDSY----------WHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIR--LFG 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTEE----------ECHHHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHH--HHC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCce----------eHhhCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHH--HcC
Confidence 56789999999999753 57777774 6999999999999995 2456775 6999999999998 677
Q ss_pred C--CCCcccHHHHHHHhhccccccccccchhhhHHHHHHHhcCCcCCccCCcccCCcccccccceeee
Q 014080 296 H--ECQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTV 361 (431)
Q Consensus 296 ~--~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~~~ALn~~~~~e~~g~~~~~e~rGl~~~E~~~~~~~ 361 (431)
+ +|+.|.++|.. ..+ .+++ ........|...+|.+||..++....
T Consensus 68 ~~~~C~~C~~~I~~----------~~~-------~~~g----~~~l~g~~f~~~~~~~yC~~~~~~~~ 114 (122)
T 1m3v_A 68 NSGAGGSGGHMGSG----------GDV-------MVVG----EPTLMGGEFGDEDERLITRLENTQFD 114 (122)
T ss_dssp CCCSSSCSSCCSCC----------EES-------SSSS----SSSCCSCTTCCTTCCCCEECTTTTTT
T ss_pred CCCccccCCCCcCc----------hhe-------EEcC----CcCCCCCccEecCCEeEccCcchhch
Confidence 7 99999988841 111 1122 12233345678899999999986443
No 55
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.14 E-value=2.8e-11 Score=95.35 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=60.6
Q ss_pred cccCcccccCCCccccC-CcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCC
Q 014080 216 EQHHPKCDVCQNFIPTN-SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD 294 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~-~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~ 294 (431)
++|+++|..|+++|.+. ...++.+.++ +||..||+|..|++.|. +..|+. .+|++||..||.+ .+
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~cy~~--~f 67 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGAKFICFQDS----------QWHSECFNCGKCSVSLV-GKGFLT-QNKEIFCQKCGSG--MD 67 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTCCEEEETTE----------EEEGGGCBCTTTCCBCS-SSCEEE-ETTEEEETTTTCC--CC
T ss_pred CccCCCCccCCCcccCCCCceeEEECCc----------ccCcccCChhhCCCcCC-CCceEe-ECCEEECHHHhhh--hh
Confidence 46889999999999961 1236777777 46999999999999995 667775 6999999999998 89
Q ss_pred CCCCCccc
Q 014080 295 THECQPLY 302 (431)
Q Consensus 295 ~~~C~~C~ 302 (431)
.++|+++.
T Consensus 68 ~~~C~~~s 75 (76)
T 1x68_A 68 TDISGPSS 75 (76)
T ss_dssp CCSSSSSC
T ss_pred CCcCCCCC
Confidence 99999874
No 56
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.03 E-value=1.2e-10 Score=96.28 Aligned_cols=75 Identities=20% Similarity=0.460 Sum_probs=62.7
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCC
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~ 296 (431)
++.++|.+|+++|... ..++.+.++. ||..||+|..|++.| .+..|+. .+|++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~~~a~~~~----------~H~~CF~C~~C~~~L-~~~~~~~-~~g~~yC~~cy~~--~~~~ 67 (101)
T 2cup_A 3 SGSSGCVECRKPIGAD-SKEVHYKNRF----------WHDTCFRCAKCLHPL-ANETFVA-KDNKILCNKCTTR--EDSP 67 (101)
T ss_dssp SCCCBCSSSCCBCCSS-SCEEEETTEE----------EETTTCCCSSSCCCT-TSSCCEE-ETTEEECHHHHTT--CCCC
T ss_pred CCCCcCcccCCcccCC-ceEEEECccC----------hhhcCCcccccCCCC-CcCeeEC-cCCEEEChhHhhh--hcCC
Confidence 4678999999999742 1367777774 699999999999999 4666775 6999999999998 8999
Q ss_pred CCCcccHHHH
Q 014080 297 ECQPLYLEIQ 306 (431)
Q Consensus 297 ~C~~C~~~I~ 306 (431)
+|..|.++|.
T Consensus 68 ~C~~C~~~I~ 77 (101)
T 2cup_A 68 KCKGCFKAIV 77 (101)
T ss_dssp BCSSSCCBCC
T ss_pred ccccCCCccc
Confidence 9999998873
No 57
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=2.4e-10 Score=92.96 Aligned_cols=77 Identities=13% Similarity=0.288 Sum_probs=63.0
Q ss_pred ccccccccccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcc
Q 014080 207 RPYHKHCYKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLE 286 (431)
Q Consensus 207 ~pyC~~CY~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~ 286 (431)
.+.+...+...+.++|..|+++|.+. .+.+.++. ||..||+|..|++.|. +..|+. .+|++||..
T Consensus 13 ~~~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~~----------~H~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~ 77 (90)
T 2dar_A 13 VQRAEHIPAGKRTPMCAHCNQVIRGP---FLVALGKS----------WHPEEFNCAHCKNTMA-YIGFVE-EKGALYCEL 77 (90)
T ss_dssp CBCCEEECTTTCCCBBSSSCCBCCSC---EEEETTEE----------ECTTTCBCSSSCCBCS-SSCBEE-SSSCEECHH
T ss_pred hhhcccCCCCCCCCCCccCCCEecce---EEEECCcc----------ccccCCccCCCCCCCC-CCEeEe-ECCEEECHH
Confidence 34455556778899999999999754 67777774 6999999999999995 566774 799999999
Q ss_pred hhhcccCCCCCCCc
Q 014080 287 CLDSAIMDTHECQP 300 (431)
Q Consensus 287 C~~~~v~~~~~C~~ 300 (431)
||.+ .+.++|+.
T Consensus 78 cy~~--~f~~~c~s 89 (90)
T 2dar_A 78 CYEK--FFASGPSS 89 (90)
T ss_dssp HHHH--HTSCCCCC
T ss_pred HHHH--HcCCCCCC
Confidence 9998 78898864
No 58
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.02 E-value=1.8e-10 Score=89.39 Aligned_cols=70 Identities=14% Similarity=0.423 Sum_probs=57.4
Q ss_pred cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCC
Q 014080 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 295 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~ 295 (431)
++|+++|..|+++|.+.+ .++.+.++ .||..||+|..|++.|. +..|+. .+|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~--~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGS----------SWHETCFICHRCQQPIG-TKSFIP-KDNQNFCVPCYEK--QHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTE----------EEETTTTCCSSSCCCCC-SSSEEE-ETTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcC----------eecccCCcccccCCccC-CCccCc-cCCeEECHHHHhH--HhC
Confidence 468899999999999642 25777776 46999999999999995 446775 6899999999998 788
Q ss_pred CCCCc
Q 014080 296 HECQP 300 (431)
Q Consensus 296 ~~C~~ 300 (431)
++|+.
T Consensus 67 ~~C~~ 71 (72)
T 1x4k_A 67 SGPSS 71 (72)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 88864
No 59
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.00 E-value=4.6e-11 Score=110.13 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=61.2
Q ss_pred CCcCCCCCC-CCCCC--cCCCCCcccccC-ceEeecCccccCCCcccCCCCCCCC-CcceeecCCccccccccccccCcc
Q 014080 147 GNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHPK 221 (431)
Q Consensus 147 g~~~~p~~~-~~~~~--~C~~C~k~I~~g-~~v~algk~wHp~CF~C~~C~~~L~-~~~F~~~dg~pyC~~CY~~~f~pk 221 (431)
+.+|+...+ ....+ +|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||+.||.+++.++
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--
T ss_pred CccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccc
Confidence 455666555 33344 799999999654 5789999999999999999999996 567999999999999999999999
Q ss_pred cccCCC
Q 014080 222 CDVCQN 227 (431)
Q Consensus 222 C~~C~~ 227 (431)
|...+.
T Consensus 134 ~~~~g~ 139 (188)
T 1rut_X 134 HLNSGG 139 (188)
T ss_dssp ------
T ss_pred ccccCC
Confidence 987765
No 60
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.00 E-value=1.8e-10 Score=89.35 Aligned_cols=70 Identities=17% Similarity=0.410 Sum_probs=56.7
Q ss_pred cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCC
Q 014080 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 295 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~ 295 (431)
++++++|..|+++|.... .++.+.++ .||..||+|..|++.|. +..|+. .+|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~--~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGGQ----------TWHEHCFLCSGCEQPLG-SRSFVP-DKGAHYCVPCYEN--KFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTTC----------CEETTTCBCTTTCCBTT-TSCEEE-ETTEEEEHHHHHH--HTS
T ss_pred CccCCCCccCCCccccCc-cEEEECcc----------ccCcccCeECCCCCcCC-CCccCC-cCCeEECHHHHHH--Hcc
Confidence 467899999999999631 25666666 46999999999999995 446764 6999999999998 788
Q ss_pred CCCCc
Q 014080 296 HECQP 300 (431)
Q Consensus 296 ~~C~~ 300 (431)
++|++
T Consensus 67 ~~C~~ 71 (72)
T 1wyh_A 67 SGPSS 71 (72)
T ss_dssp CCCCC
T ss_pred CcCCC
Confidence 98874
No 61
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.99 E-value=3e-10 Score=89.04 Aligned_cols=61 Identities=16% Similarity=0.395 Sum_probs=51.8
Q ss_pred cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
.+|+++|.+|+++|.+. +|.+.++ +||..||+|..|++.|..+..|+. .+|++||..||..
T Consensus 2 s~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~~~~f~~-~~~~~yC~~C~~~ 62 (73)
T 1wig_A 2 SSGSSGCDSCEKYITGR---VLEAGEK----------HYHPSCALCVRCGQMFAEGEEMYL-QGSSIWHPACRQA 62 (73)
T ss_dssp CCSCCSCSSSCCCCSSC---CBCCSSC----------CBCTTTSCCSSSCCCCCSSCCCEE-ETTEEECTTHHHH
T ss_pred CcCcCCcccCCCEecCe---eEEeCCC----------CCCCCcCEeCCCCCCCCCCCeeEe-eCCEEEChHHChH
Confidence 36889999999999974 5667776 469999999999999965777775 6899999999987
No 62
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.99 E-value=2.8e-10 Score=87.86 Aligned_cols=68 Identities=18% Similarity=0.387 Sum_probs=56.6
Q ss_pred cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCC
Q 014080 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 295 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~ 295 (431)
.+++++|..|+++|.+. .+.+.++ .||..||+|..|++.| .+..|+. .+|++||..||.+ .+.
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~~-~~~~~yC~~cy~~--~f~ 64 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTG---GVTYREQ----------PWHKECFVCTACRKQL-SGQRFTA-RDDFAYCLNCFCD--LYA 64 (70)
T ss_dssp CCCCCBCSSSCCBCCSS---EEESSSS----------EEETTTSBCSSSCCBC-TTSCCEE-SSSSEECHHHHHH--HTC
T ss_pred CCCCCCCcccCCeeccc---eEEECcc----------ccCCCCCccCCCCCcC-CcCceEe-eCCeEECHHHHHH--Hhc
Confidence 35789999999999864 4677776 4699999999999999 4667775 6899999999998 788
Q ss_pred CCCCc
Q 014080 296 HECQP 300 (431)
Q Consensus 296 ~~C~~ 300 (431)
++|++
T Consensus 65 ~~c~~ 69 (70)
T 2d8z_A 65 SGPSS 69 (70)
T ss_dssp CCCTT
T ss_pred cccCC
Confidence 88864
No 63
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.99 E-value=2.4e-10 Score=88.11 Aligned_cols=67 Identities=15% Similarity=0.424 Sum_probs=56.6
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCC
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~ 296 (431)
+++++|..|+++|.++ .+.+.++. ||..||+|..|++.|. +..|+. .+|++||..||.+ .+.+
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~-~~~~~yC~~cy~~--~f~~ 65 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQP----------WHADCFVCVTCSKKLA-GQRFTA-VEDQYYCVDCYKN--FVSG 65 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTEE----------ECTTTTBCTTTCCBCT-TSCEEE-CSSCEEEHHHHHH--HHTC
T ss_pred CCcCCCcccCCEeCcc---eEEECccc----------cccCcCEECCCCCCCC-CCccEe-ECCEEECHHHhHH--HhcC
Confidence 5678999999999864 57777774 6999999999999994 667775 6899999999998 7888
Q ss_pred CCCc
Q 014080 297 ECQP 300 (431)
Q Consensus 297 ~C~~ 300 (431)
+|++
T Consensus 66 ~C~g 69 (69)
T 2cur_A 66 PSSG 69 (69)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8874
No 64
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=98.99 E-value=1.4e-11 Score=111.69 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.5
Q ss_pred CcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCC
Q 014080 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHEC 298 (431)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C 298 (431)
.++|.+|+++|.+.. ++.+.++ .||..||+|..|++.|. +..| . .+|++||..||.+ .++++|
T Consensus 6 ~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f-~-~~g~~yC~~~y~~--~f~~~C 68 (169)
T 2rgt_A 6 IPMCAGCDQHILDRF--ILKALDR----------HWHSKCLKCSDCHVPLA-ERCF-S-RGESVYCKDDFFK--RFGTKC 68 (169)
T ss_dssp -CBBSSSSSBCCSSS--CEECSSC----------EECTTTSBCTTTCCBCC-SCCE-E-SSSCEECHHHHHH--HHSCBC
T ss_pred CCccccCCCccCCcE--EEEECCc----------EEccccCccCCCCCcCC-CCCc-c-cCCeeeecccccc--cccccc
Confidence 578999999999753 5667776 46999999999999994 3445 3 6999999999998 789999
Q ss_pred CcccHHHHHHHhhccccccccccchhhhHHHHHHHhcCCc---------C--CccCCcccCCcccccccceeee
Q 014080 299 QPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEK---------N--GHHHLPETRGLCLSEEQTVTTV 361 (431)
Q Consensus 299 ~~C~~~I~~f~~~l~~~~~~~~pl~lv~~~ALn~~~~~e~---------~--g~~~~~e~rGl~~~E~~~~~~~ 361 (431)
..|.++|.. .+. + ..|+++.||.+. . |...+...+|..||..+|...+
T Consensus 69 ~~C~~~I~~----------~~~-v----~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~ 127 (169)
T 2rgt_A 69 AACQLGIPP----------TQV-V----RRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 127 (169)
T ss_dssp TTTCCBCCT----------TSE-E----EEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHH
T ss_pred cccccccCC----------CcE-E----EEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHh
Confidence 999987731 111 0 236778887652 1 3333456789999999986544
No 65
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.98 E-value=4.6e-10 Score=87.24 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=54.8
Q ss_pred ccCcccccCCCccccC-CcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCC
Q 014080 217 QHHPKCDVCQNFIPTN-SAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDT 295 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~-~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~ 295 (431)
.+.++|..|+++|.+. ...++.+.++ +||..||+|..|++.|. +..|+. .+|++||..||.+ .+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~----------~wH~~CF~C~~C~~~L~-~~~f~~-~~g~~yC~~c~~~--~~~ 68 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEER----------QWHNDCFNCKKCSLSLV-GRGFLT-ERDDILCPDCGKD--ISG 68 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSC----------EECTTTCBCSSSCCBCT-TSCCEE-CSSSEECHHHHHT--CCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCc----------ccCcccCEeccCCCcCC-CCccEe-ECCEEEChhHcCc--ccC
Confidence 4678999999999961 1235777776 46999999999999994 667774 6999999999988 677
Q ss_pred CCC
Q 014080 296 HEC 298 (431)
Q Consensus 296 ~~C 298 (431)
|++
T Consensus 69 p~~ 71 (72)
T 1x4l_A 69 PSS 71 (72)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 66
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=98.97 E-value=3.3e-11 Score=104.27 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=60.5
Q ss_pred CCcCCCCCC-CCCCC--cCCCCCcccccC-ceEeecCccccCCCcccCCCCCCCC-CcceeecCCccccccccccccCc
Q 014080 147 GNIFQPFPF-FSGYR--ICAGCNTEIGHG-RYLSCMEAFWHPECFRCHSCNLPIT-DVEFSMSGNRPYHKHCYKEQHHP 220 (431)
Q Consensus 147 g~~~~p~~~-~~~~~--~C~~C~k~I~~g-~~v~algk~wHp~CF~C~~C~~~L~-~~~F~~~dg~pyC~~CY~~~f~p 220 (431)
+.+|+...+ ....+ +|.+|+++|... .++.++++.||+.||+|..|+++|. +..|+..++++||..||.+++++
T Consensus 51 g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 51 GRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKI 129 (131)
T ss_dssp TEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHHH
T ss_pred CEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhhc
Confidence 445555444 33445 999999999643 5789999999999999999999995 66799999999999999988764
No 67
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.95 E-value=3.9e-10 Score=88.64 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=57.1
Q ss_pred cccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCc-chhhcccCCCCCC
Q 014080 220 PKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMDTHEC 298 (431)
Q Consensus 220 pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~-~C~~~~v~~~~~C 298 (431)
|+|.+|+++|.... .+.+.++ .||..||+|..|++.|.. ..|+. .+|++||. .||.+ .+.++|
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~~-~~g~~yC~~~cy~~--~f~~~C 64 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLGK----------DWHRPCLKCEKCGKTLTS-GGHAE-HEGKPYCNHPCYSA--MFGPKG 64 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETTE----------EEETTTCBCTTTCCBCCT-TTEEE-ETTEEEETTTHHHH--HSSCCC
T ss_pred CcCCCCCCEEECce--EEEECCc----------cccCCCCCccccCccCCC-CceEC-cCCeEeeCHHHHHH--HhCccC
Confidence 68999999998533 5777776 469999999999999954 46775 69999999 69998 889999
Q ss_pred CcccHH
Q 014080 299 QPLYLE 304 (431)
Q Consensus 299 ~~C~~~ 304 (431)
.+|...
T Consensus 65 ~~C~~~ 70 (76)
T 1iml_A 65 FGRGGA 70 (76)
T ss_dssp SSCCCS
T ss_pred CCcCCc
Confidence 999843
No 68
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.95 E-value=5.9e-10 Score=87.65 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=56.7
Q ss_pred cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCc-chhhcccCC
Q 014080 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCL-ECLDSAIMD 294 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~-~C~~~~v~~ 294 (431)
..+.++|.+|+++|.... .+.+.++. ||..||+|..|++.|. +..|+. .+|++||. .||.+ .+
T Consensus 6 ~~~~~~C~~C~~~I~~~~--~v~a~~~~----------~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~cy~~--~f 69 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE--KVSSLGKD----------WHKFCLKCERCSKTLT-PGGHAE-HDGKPFCHKPCYAT--LF 69 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT--EEEETTEE----------EETTTCBCSSSCCBCC-TTSCEE-ETTEEECTTTHHHH--HS
T ss_pred CCCCCCCcCCCCEeECCe--EEEECCeE----------eeCCCCCCCCCCCccC-CCceEe-ECCEEecchHHHHH--hc
Confidence 357889999999999543 57777764 6999999999999995 556775 68999999 79988 78
Q ss_pred CCCCCc
Q 014080 295 THECQP 300 (431)
Q Consensus 295 ~~~C~~ 300 (431)
.++|.+
T Consensus 70 ~~kc~g 75 (76)
T 2cu8_A 70 GSGPSS 75 (76)
T ss_dssp CSSCSC
T ss_pred ccccCC
Confidence 888864
No 69
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.93 E-value=2.5e-10 Score=98.27 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=60.6
Q ss_pred cccccCc--ccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcc
Q 014080 214 YKEQHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (431)
Q Consensus 214 Y~~~f~p--kC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~ 291 (431)
|.++|++ +|..|+++|.+.+ .++.+.++ +||..||+|..|++.|..+..|+. .+|++||..||..
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~- 67 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKDK----------VYHLECFKCAACQKHFSVGDRYLL-INSDIVCEQDIYE- 67 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSSC----------CCCTTTCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHH-
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECCc----------ccccccCccccCCCCCCCCCcEEe-eCCEEEcHHHhHH-
Confidence 6678998 9999999999642 24566666 469999999999999977778885 5899999999987
Q ss_pred cCCCCCCCccc
Q 014080 292 IMDTHECQPLY 302 (431)
Q Consensus 292 v~~~~~C~~C~ 302 (431)
.+.++|+.+.
T Consensus 68 -~~~~~~~~~~ 77 (123)
T 2l3k_A 68 -WTKINGGSGG 77 (123)
T ss_dssp -HHHHHTCCCC
T ss_pred -HhccccCCCC
Confidence 5667776555
No 70
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.93 E-value=3.3e-10 Score=90.16 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=50.2
Q ss_pred cCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCC
Q 014080 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (431)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~ 297 (431)
..++|..|+++|.... .+.+.++ .||..||+|..|++.|.. ..|+. .+|++||..||.+ .+.++
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~~----------~~H~~CF~C~~C~~~L~~-~~~~~-~~~~~yC~~cy~~--~f~~~ 69 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDGR----------SFHRCCFLCMVCRKNLDS-TTVAI-HDAEVYCKSCYGK--KYGPK 69 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETTE----------EEESSSEECSSSCCEECS-SCCEE-ETTEEECSHHHHH--HCC--
T ss_pred CCCcCcCcCccccCce--eEEeCCc----------ccccccCccCCCCCCCCC-CCeEe-eCCEEECHHHHHH--HhCCc
Confidence 4689999999997543 5777776 469999999999999954 45765 5999999999998 89999
Q ss_pred CCcccH
Q 014080 298 CQPLYL 303 (431)
Q Consensus 298 C~~C~~ 303 (431)
|.+|..
T Consensus 70 c~gcg~ 75 (81)
T 1a7i_A 70 GYGYGQ 75 (81)
T ss_dssp ------
T ss_pred ccccCC
Confidence 999985
No 71
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.88 E-value=5.6e-10 Score=85.31 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=49.8
Q ss_pred cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
+++.++|.+|+++|.+. .+.+.++ .||..||+|..|++.|. +..|+. .+|++||..||.+
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMGK----------QWHVEHFVCAKCEKPFL-GHRHYE-RKGLAYCETHYNQ 61 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTTS----------BEETTTCBCTTTCCBCS-SSCCEE-ETTEEECHHHHHH
T ss_pred CcCCCCCcccCCEecce---EEEECcc----------ccccCcCEECCCCCCCC-CCceEe-ECCcEECHHHHHH
Confidence 35789999999999953 5667666 46999999999999994 566774 6999999999987
No 72
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.87 E-value=1.6e-09 Score=86.50 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=54.3
Q ss_pred cCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCC
Q 014080 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (431)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~ 297 (431)
..++|..|+++|.... .+.+.++ .||..||+|..|++.|. + .|+. .+|++||..||.+ .+.++
T Consensus 14 ~~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~-~-~~~~-~~g~~yC~~~y~~--~fg~~ 76 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQ--SLLALDK----------QWHVSCFKCQTCSVILT-G-EYIS-KDGVPYCESDYHA--QFGSG 76 (80)
T ss_dssp SCSCCTTTCCCCSSSC--CEEETTE----------EECTTTCBCSSSCCBCS-S-CCEE-ETTEEECTTHHHH--HTTCC
T ss_pred CCCCCcCcCCeeCCCe--EEEECCc----------ccccccCCcCcCCCCcC-C-CeEE-ECCEEECHHHHHH--HcCCC
Confidence 3578999999998543 5777777 46999999999999995 4 5764 6999999999998 78888
Q ss_pred CCc
Q 014080 298 CQP 300 (431)
Q Consensus 298 C~~ 300 (431)
|.+
T Consensus 77 C~~ 79 (80)
T 2dj7_A 77 PSS 79 (80)
T ss_dssp STT
T ss_pred CCC
Confidence 874
No 73
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.86 E-value=1.1e-09 Score=86.07 Aligned_cols=68 Identities=13% Similarity=0.272 Sum_probs=53.7
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCC
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~ 296 (431)
.+.++|.+|+++|.+.+ .++.+.++. ||..||+|..|++.|..+ .|+. .+|++||..||.+ .+.+
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~~----------~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~--~f~~ 73 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGEL----------YHEQCFVCAQCFQQFPEG-LFYE-FEGRKYCEHDFQM--LFAP 73 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTEE----------ECTTTCCCTTTCCCCGGG-CSEE-ETTEEECHHHHHH--HCCC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCccE----------eccccCeECCCCCCCCCC-CeEe-ECCeEeCHHHHHH--Hhhc
Confidence 46789999999998532 356677774 699999999999999654 5664 6999999999988 7888
Q ss_pred CCC
Q 014080 297 ECQ 299 (431)
Q Consensus 297 ~C~ 299 (431)
+|.
T Consensus 74 ~C~ 76 (77)
T 1g47_A 74 CWI 76 (77)
T ss_dssp C--
T ss_pred ccC
Confidence 885
No 74
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.84 E-value=1.1e-09 Score=93.05 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=74.0
Q ss_pred CcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCC-CCceEEccCCcccCcchhhcccCCCCC
Q 014080 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR-DTKYLSLDDGRKLCLECLDSAIMDTHE 297 (431)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~-g~~f~~l~dG~~yC~~C~~~~v~~~~~ 297 (431)
.++|.+|+++|.+.. ++.+.++ .||..||+|..|+++|.. |..|+. .+|++||..||.+ .+.++
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~~y~~--~f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAIDQ----------YWHEDCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLR--LGGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSSS----------EECTTTCCCSSSCSCCCCSSSCCCC-BTTBCCCHHHHHH--HHTSC
T ss_pred CCCCcCCCCeeCCcE--EEEECch----------hHHHhcCcccccCCchhcCCCeeEE-ECCeeechHHHHH--HhCcc
Confidence 478999999999642 5677776 469999999999999963 457774 6999999999998 88999
Q ss_pred CCcccHHHHHHHhhccccccccccchhhhHHHHHHHhcCCcCCccCCcccCCccccccccee
Q 014080 298 CQPLYLEIQEFYEGLNMKVEQQVPLLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVT 359 (431)
Q Consensus 298 C~~C~~~I~~f~~~l~~~~~~~~pl~lv~~~ALn~~~~~e~~g~~~~~e~rGl~~~E~~~~~ 359 (431)
|..|.. +.-|. + .........|...+|.+||..++..
T Consensus 68 c~~c~~-------~~~~~-------------~-----~~~~~~g~~f~~~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 68 GHMGSG-------GDVMV-------------V-----GEPTLMGGEFGDEDERLITRLENTQ 104 (114)
T ss_dssp CSSCBS-------CSCCC-------------S-----SCSSTTSSBCCCSSSCCCEEEECTT
T ss_pred cCcCCC-------CceeE-------------c-----CCccCCCCeeEEcCCEeecchhhhc
Confidence 988862 10010 0 1111222356788999999888763
No 75
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.84 E-value=2.6e-09 Score=84.87 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=52.8
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCC
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~ 296 (431)
.+.++|..|+++|.+. .+.+.++ .||..||+|..|++.|.. ..| ..+|++||..||.+ .++|
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~f--~~~g~~yC~~cy~~--~f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKND----------PYHPDHFNCANCGKELTA-DAR--ELKGELYCLPCHDK--MGVS 74 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSS----------CCCTTTSBCSSSCCBCCT-TCE--EETTEEECHHHHHT--TSCC
T ss_pred cCCCCCccCCCEecce---EEEECcc----------eeCCCCCEeCCCCCccCC-CCE--eECCEEeCHHHHHH--hCCC
Confidence 4678999999999954 4667776 469999999999999953 344 35999999999998 7887
Q ss_pred CCC
Q 014080 297 ECQ 299 (431)
Q Consensus 297 ~C~ 299 (431)
.+.
T Consensus 75 ~~s 77 (79)
T 2cor_A 75 GPS 77 (79)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
No 76
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.80 E-value=2.7e-09 Score=86.90 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=56.3
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCC
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTH 296 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~ 296 (431)
...++|..|+++|.+.. .+.+.++ .||..||+|..|++.|..+ .|+. .+|++||..||.. .+.+
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~--~f~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQQ----------VFHISCFRCSYCNNKLSLG-TYAS-LHGRIYCKPHFNQ--LFKS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSSS----------EEETTTCBCTTTCCBCCTT-TCCC-SSSCCCCHHHHHH--HSCC
T ss_pred CCCCcCccCCCccCCce--eEEECCC----------EECCCCCeeCCCCCCCCCC-CcEe-ECCEEECHHHHHH--HhCC
Confidence 35789999999998743 5666666 4699999999999999544 4664 6999999999998 7889
Q ss_pred CCCccc
Q 014080 297 ECQPLY 302 (431)
Q Consensus 297 ~C~~C~ 302 (431)
+|..+.
T Consensus 77 kc~~~~ 82 (91)
T 2d8y_A 77 KGNYDE 82 (91)
T ss_dssp CSCCCS
T ss_pred CcCccC
Confidence 997443
No 77
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.78 E-value=2.6e-09 Score=82.35 Aligned_cols=64 Identities=14% Similarity=0.373 Sum_probs=51.4
Q ss_pred cccccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 214 YKEQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
|..++.++|..|+++|.+.+ .++.+.++ .||..||+|..|++.|..+ .|+. .+|++||..||.+
T Consensus 6 y~~~~~~~C~~C~~~i~~~e-~~~~~~~~----------~~H~~CF~C~~C~~~L~~~-~~~~-~~g~~yC~~~y~~ 69 (72)
T 3f6q_B 6 FQGSASATCERCKGGFAPAE-KIVNSNGE----------LYHEQCFVCAQCFQQFPEG-LFYE-FEGRKYCEHDFQM 69 (72)
T ss_dssp CCCCTTCBCTTTCCBCCTTC-EEEEETTE----------EEETTTSSCTTTCCCCGGG-CCEE-ETTEEECHHHHHH
T ss_pred ccCcCCccchhcCccccCCc-eEEEeCcC----------eeCcCCCcccCCCCCCCCC-CeEe-ECCeEeCHHHHHH
Confidence 45578899999999999753 24556666 4699999999999999655 6664 5899999999976
No 78
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=3.5e-09 Score=85.79 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=52.7
Q ss_pred cCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCC
Q 014080 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (431)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~ 297 (431)
..++|..|+++|.+. ++.+.++ .||..||+|..|++.|. +..|+. .+|++||..||.+ .+.++
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~~y~~--~f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDK----------YRHPECFVCADCNLNLK-QKGYFF-VEGELYCETHARA--RTSGP 86 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSC----------EECTTTCCCSSSCCCTT-TSCCEE-ETTEEECHHHHHH--HSSSC
T ss_pred cCCCcccCCCEeccc---EEEECCc----------eECccCCEecCCCCCCC-CCCeEe-ECCEEECHHHHHH--HhCCC
Confidence 457899999999974 5667666 46999999999999995 445665 4899999999988 67777
Q ss_pred CC
Q 014080 298 CQ 299 (431)
Q Consensus 298 C~ 299 (431)
|.
T Consensus 87 ~~ 88 (89)
T 1x64_A 87 SS 88 (89)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 79
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.77 E-value=3.2e-09 Score=81.12 Aligned_cols=60 Identities=22% Similarity=0.492 Sum_probs=48.9
Q ss_pred cCcccccCCCccccCCcceEEEecccccccccCCCccc--CCCCccCCCCCccCCCCceEEccCCcccC-cchhhc
Q 014080 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHER--DGTPRCCSCERMEPRDTKYLSLDDGRKLC-LECLDS 290 (431)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H--~~CF~C~~C~r~l~~g~~f~~l~dG~~yC-~~C~~~ 290 (431)
|+++|.+|+++|.+.. ..+.+.++. || ..||+|..|+++| .+..|+. .+|++|| ..|+.+
T Consensus 1 fa~~C~~C~~~I~~~~-~~v~a~~~~----------wH~~~~CF~C~~C~~~L-~~~~f~~-~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-QRVTYNNFS----------WHASTECFLCSCCSKCL-IGQKFMP-VEGMVFCSVECKKR 63 (65)
T ss_dssp -CEECTTTSSEECTTS-CEEEETTEE----------EETTTTTSBCTTTCCBC-TTSCCEE-ETTEEESSHHHHHT
T ss_pred CcCCCcCCCCeeccCc-eEEEECCCc----------cCCCCCCEECCCCCCcC-CCCceEE-ECCEEecCHHHhhh
Confidence 5789999999999531 267888874 68 9999999999999 4667775 6899999 899876
No 80
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=5.5e-09 Score=80.99 Aligned_cols=62 Identities=15% Similarity=0.296 Sum_probs=51.0
Q ss_pred ccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcc
Q 014080 217 QHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSA 291 (431)
Q Consensus 217 ~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~ 291 (431)
+++++|.+|+++|.+.. .++.+.++ .||..||+|..|++.| .+..|+. .+|++||..||.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L-~~~~~~~-~~~~~yC~~cy~~~ 64 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDR----------VFHVGCFVCSTCRAQL-RGQHFYA-VERRAYCEGCYVAT 64 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSS----------EECTTTCBCSSSCCBC-TTSCEEE-SSSCEEEHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCC----------eEcccCCcccccCCcC-CcCcCEe-eCCeEECHHHHHHH
Confidence 46889999999999632 25677776 4699999999999999 5677875 68999999999874
No 81
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.76 E-value=4e-09 Score=81.43 Aligned_cols=63 Identities=21% Similarity=0.444 Sum_probs=50.9
Q ss_pred cCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCC
Q 014080 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (431)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~ 297 (431)
+.++|..|+++|.+. ++.+.++. ||..||+|..|++.|..+ .|+. .+|++||..||.+ .+.+.
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~~----------~H~~CF~C~~C~~~L~~~-~f~~-~~g~~yC~~c~~~--~~~~~ 66 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNNS----------WHPECFRCDLCQEVLADI-GFVK-NAGRHLCRPCHNR--EKASG 66 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTEE----------ECTTTSBCSSSCCBCSSS-CCEE-ETTEEECHHHHHH--HHCCC
T ss_pred CCCcCccCCCEecce---EEEECccc----------ccccCCEeCCCCCcCCCC-ccEe-ECCeEECHHHhhh--hcCCC
Confidence 568999999999964 57787774 699999999999999544 5664 6999999999987 44443
No 82
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.74 E-value=1.9e-09 Score=85.49 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=52.4
Q ss_pred cCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCC
Q 014080 218 HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHE 297 (431)
Q Consensus 218 f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~ 297 (431)
..++|..|+++|.+. ++.+.++ .||..||+|..|++.|. +..|+. .++++||..||.+ .+.++
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~-~~~~~~-~~g~~yC~~cy~~--~~~p~ 76 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDR----------HRHPECYVCTDCGTNLK-QKGHFF-VEDQIYCEKHARE--RVSGP 76 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSC----------EECTTTTSCSSSCCCHH-HHCCEE-SSSCEECHHHHHH--HHSSC
T ss_pred CCCccccCCCCccCc---EEEECcc----------eeCcCcCeeCCCCCCCC-CCCeEe-ECCEEECHHHHHH--HhCCC
Confidence 367999999999974 5777776 46999999999999994 455775 6899999999987 55665
Q ss_pred CC
Q 014080 298 CQ 299 (431)
Q Consensus 298 C~ 299 (431)
+.
T Consensus 77 g~ 78 (79)
T 1x62_A 77 SS 78 (79)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 83
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.74 E-value=4.6e-09 Score=90.72 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=51.3
Q ss_pred cccCcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccC-CCCceEEccCCcccCcchhhc
Q 014080 216 EQHHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEP-RDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 216 ~~f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~-~g~~f~~l~dG~~yC~~C~~~ 290 (431)
..+.++|.+|+++|.+.. ++.+.++ .||..||+|..|++.|. .|..|+. .+|++||..||.+
T Consensus 58 ~~~~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~~~g~~f~~-~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIR 120 (123)
T ss_dssp CSSCSBBSSSSSBCCSSS--EEEETTE----------EEETTTSBCTTTCCBGGGTTCCCBC-SSSCCBCHHHHHH
T ss_pred CccCCcCcCCCCCcCCcE--EEEeCCc----------EEcccccCcCcCCCcccccCCceEE-ECCEEeCHHHhhh
Confidence 356789999999999753 5777777 46999999999999996 3567774 7999999999986
No 84
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.72 E-value=1e-08 Score=81.98 Aligned_cols=63 Identities=22% Similarity=0.358 Sum_probs=48.8
Q ss_pred CcccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEE-ccCCcccCcchhhcccCCCC
Q 014080 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLS-LDDGRKLCLECLDSAIMDTH 296 (431)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~-l~dG~~yC~~C~~~~v~~~~ 296 (431)
.++|..|+++|...+ .+.+.++ .||..||+|..|++.|. +..|+. ..+|++||..||.+ ++.+
T Consensus 15 ~~~C~~C~~~I~~~e--~v~a~~~----------~wH~~CF~C~~C~~~L~-~~~~~~~~~~g~~yC~~~y~~--~~~~ 78 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLCVNGH----------FFHRSCFRCHTCEATLW-PGGYEQHPGDGHFYCLQHLPQ--TDSG 78 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCCBTTB----------CCBTTTCBCSSSCCBCC-TTSEECCTTTCCCEETTTCCC--CCCC
T ss_pred CCCCcccCCCcccce--EEEECCC----------eeCCCcCEEcCCCCCcC-CCceeEeCcCCEEEChHHHHh--hhcC
Confidence 568999999997543 4556666 46999999999999994 445553 36899999999987 4444
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.17 E-value=9.8e-05 Score=48.39 Aligned_cols=29 Identities=31% Similarity=0.881 Sum_probs=27.0
Q ss_pred CCcCCCCCcccccCceEeecCccccCCCc
Q 014080 159 YRICAGCNTEIGHGRYLSCMEAFWHPECF 187 (431)
Q Consensus 159 ~~~C~~C~k~I~~g~~v~algk~wHp~CF 187 (431)
.+.|..|++.|+..+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999989999999999999998
No 86
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=94.01 E-value=0.023 Score=35.14 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.7
Q ss_pred CChhHHHHHHHhhhhhhhccCCc
Q 014080 40 FDNEEIDRAIALSLVEVDQKGKK 62 (431)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~ 62 (431)
.|.|||.-|||||++|..++.++
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~~ 24 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXXX 24 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhccc
Confidence 46889999999999998887665
No 87
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=85.51 E-value=0.98 Score=35.80 Aligned_cols=18 Identities=44% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCChhHHHHHHHhhhhhh
Q 014080 39 GFDNEEIDRAIALSLVEV 56 (431)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~ 56 (431)
+.+.|||.|||+|||-|.
T Consensus 9 ~~eDeDLkrAieLSL~Es 26 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKES 26 (81)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred cCchHHHHHHHHHhHHHH
Confidence 567899999999999664
No 88
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=85.38 E-value=0.21 Score=32.26 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=21.4
Q ss_pred CcccccCCCccccCCcceEEEecccccccccCCCcccCCCC
Q 014080 219 HPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTP 259 (431)
Q Consensus 219 ~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF 259 (431)
.++|..|++.+...+ .+.+.++. ||..||
T Consensus 3 ~~~C~~C~k~Vy~~E--k~~~~g~~----------~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE--KVNCLDKF----------WHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG--CCCSSSSC----------CCGGGC
T ss_pred CCcCCccCCEEecce--eEEECCeE----------ecccCC
Confidence 468999999998753 45667765 477776
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=83.66 E-value=0.14 Score=42.80 Aligned_cols=104 Identities=17% Similarity=0.377 Sum_probs=65.2
Q ss_pred cccCCCCCCCCCc------ceeecCCccccccccccc--cCcccccCCCccccCCcceEEEecccccccccCCCcccCCC
Q 014080 187 FRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGT 258 (431)
Q Consensus 187 F~C~~C~~~L~~~------~F~~~dg~pyC~~CY~~~--f~pkC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~C 258 (431)
+.|..|...+... .....=|..||..|..+. ....|..|.+.+.... +. ... ....-
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--l~-~l~------------i~~~~ 72 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR--YH-PIY------------IGSGT 72 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC--EE-ECB------------CSSSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc--cc-ccc------------cCCCC
Confidence 5666666555321 133345678888887654 3458999999998753 21 111 12234
Q ss_pred CccCCCCCccCC----CCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPR----DTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~----g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
..|..|...+.. +...+...=|..+|..|..+-+.....|--|..+|
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcC
Confidence 679999876532 22234556789999999977555566788787655
No 90
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=74.03 E-value=0.82 Score=38.97 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=18.9
Q ss_pred CCCCCChhHHHHHHHhhhhhhhc
Q 014080 36 DSSGFDNEEIDRAIALSLVEVDQ 58 (431)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~ 58 (431)
+.+..+++||-|||||||.|..+
T Consensus 90 dlt~d~KDDLQ~AIALSLqES~~ 112 (129)
T 2lva_A 90 DLTHDNKDDLQAAIALSLLESPK 112 (129)
Confidence 45556799999999999987765
No 91
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.10 E-value=6.5 Score=32.26 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=26.9
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccCcccccCCCcccc
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPT 231 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~ 231 (431)
+.|..|...+........=|..||..|....+...|..|...+..
T Consensus 23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 555666555543222213456777777766655678888877753
No 92
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=61.84 E-value=3.5 Score=32.60 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.9
Q ss_pred CCCChhHHHHHHHhhhhhhh
Q 014080 38 SGFDNEEIDRAIALSLVEVD 57 (431)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~ 57 (431)
.+.|++||..|||.||.|-+
T Consensus 51 ~edeD~DLKAAIaASLrd~E 70 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAE 70 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHH
Confidence 46778999999999997654
No 93
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=61.19 E-value=5.4 Score=36.03 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=19.3
Q ss_pred EEEEEecCCChhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
.+|...++-..+....++|||++|.+
T Consensus 123 ~gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 123 VGVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEEecCCCchhHHHHHHHHHHhhhc
Confidence 35566666556678899999999964
No 94
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=60.44 E-value=5.7 Score=35.96 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=18.1
Q ss_pred EEEEecCCChhhhhhHHHHhhhHhH
Q 014080 391 AILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 391 ~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
+|...++-..+....++|||++|-+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 124 GIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcceeeEEEehhhhcccc
Confidence 4555555445678889999999964
No 95
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=59.28 E-value=6.1 Score=35.53 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=18.7
Q ss_pred EEEEEecCCChhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
.+|...++-..+....++|||++|.+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (197)
T 1qua_A 122 VGLIQDHSAIPLLMAVTMAHELGHNL 147 (197)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred cceEeccCCcchHHHHHHHHHHHHhc
Confidence 35555565555667899999999964
No 96
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=58.12 E-value=6.6 Score=35.60 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=18.2
Q ss_pred EEEEecCCChhhhhhHHHHhhhHhH
Q 014080 391 AILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 391 ~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
+|...++-..+....++|||++|.+
T Consensus 126 gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 126 AVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCcchhhHHHHHHHhhhhc
Confidence 4555555445678889999999964
No 97
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=57.38 E-value=6.9 Score=35.39 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=18.8
Q ss_pred EEEEEecCCChhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
.+|...++-..+.+..++|||++|-+
T Consensus 122 ~gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 122 AGIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred CceEeecCCchhHHHHHHHHHHHHhc
Confidence 35555565445678899999999964
No 98
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=57.31 E-value=7 Score=35.15 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=18.3
Q ss_pred EEEEEecCCChhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
.+|.-.++-..+.+..++|||++|.+
T Consensus 120 ~gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 120 VGVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred cceEeecCCchhHHHHHHHHHHhhhc
Confidence 34555555445667899999999964
No 99
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.64 E-value=5.6 Score=29.87 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=32.7
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
+.|..|...+........+.=|..||..|....+.....|--|..+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 57788877665555555556778888888877665667787787655
No 100
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.30 E-value=6.1 Score=29.32 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=28.0
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~pkC~~C~~~I~~~ 232 (431)
+.|..|...+........=|..||..|..+.+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45566655554422222445677887775533 46788888888754
No 101
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=55.01 E-value=7.3 Score=35.44 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=17.8
Q ss_pred EEEEecCCChhhhhhHHHHhhhHh
Q 014080 391 AILILYGLPRLLTGSILAHEMMHA 414 (431)
Q Consensus 391 ~il~l~glprl~~g~ilaHE~~Ha 414 (431)
+|...++...+.+..++|||++|-
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~ 144 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHN 144 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHH
T ss_pred eEEecCCCChhHHHHHHHHHHHHH
Confidence 455555666667788999999995
No 102
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=54.50 E-value=7 Score=29.32 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCcccc
Q 014080 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (431)
Q Consensus 184 p~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~~ 231 (431)
+.-|.|..|...+.+ .....-|..||..|..+.+ ...|..|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345788888877765 3344678888988876543 3467777777764
No 103
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=53.83 E-value=11 Score=26.03 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=30.6
Q ss_pred CccCCCCCccCCCCceEEcc-CCcccCcchhhcccCCCCCCCcccHH
Q 014080 259 PRCCSCERMEPRDTKYLSLD-DGRKLCLECLDSAIMDTHECQPLYLE 304 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~-dG~~yC~~C~~~~v~~~~~C~~C~~~ 304 (431)
..|..|...+..+.....+. =|..||..|..+-+.....|--|..+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCE
Confidence 46777777665555445444 67788888887766666677777644
No 104
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.05 E-value=14 Score=26.17 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=24.5
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~ 232 (431)
+.|..|...+... ....=|..||..|... ....|..|...+...
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 4455555544432 1223445566666554 455788888877643
No 105
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=52.86 E-value=8.4 Score=36.76 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=17.6
Q ss_pred EEEEEe--cC--CChhhhhhHHHHhhhHhH
Q 014080 390 TAILIL--YG--LPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l--~g--lprl~~g~ilaHE~~Ha~ 415 (431)
++|... || +|...+..++||||+|-+
T Consensus 171 ~g~~~~~~~g~~~~~~~~a~~~AHElGHnl 200 (288)
T 2i47_A 171 SGLTSTKNYGKTILTKEADLVTTHELGHNF 200 (288)
T ss_dssp EEEEESEETTEECCHHHHHHHHHHHHHHHT
T ss_pred cceEEeeccCcccchhhHHHHHHHHHHhhc
Confidence 444433 66 344457899999999964
No 106
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.72 E-value=6.8 Score=28.86 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=25.7
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc-----CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f-----~pkC~~C~~~I~~~ 232 (431)
+.|..|...+..... ..=|..||..|..+.+ ...|..|...|..+
T Consensus 21 ~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 445555544443222 2345667777776544 23788888887653
No 107
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=51.56 E-value=7.4 Score=31.76 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=14.2
Q ss_pred CChhhhhhHHHHhhhHhH
Q 014080 398 LPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 398 lprl~~g~ilaHE~~Ha~ 415 (431)
|...-..+|||||++|.-
T Consensus 78 l~~~El~aVlaHElgH~~ 95 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIA 95 (107)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 455567789999999964
No 108
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.57 E-value=5.8 Score=28.84 Aligned_cols=45 Identities=22% Similarity=0.637 Sum_probs=27.0
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~~~ 232 (431)
+.|..|...+.... ...=|..||..|..+.+ ...|..|+..|..+
T Consensus 16 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSPK-QTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSCC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45555554443321 12445678888877654 35788888888754
No 109
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=47.86 E-value=11 Score=38.30 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=19.7
Q ss_pred EEEEEecCCChhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
.+|..-+|-..+.+..++||||+|-+
T Consensus 124 ~gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 124 TGIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEEecCCCcchhhhhhHHHHHHHHc
Confidence 35555666556778899999999964
No 110
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=47.58 E-value=10 Score=38.57 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEEEecCCChhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
.+|...|+--.+.+..++||||+|-+
T Consensus 133 ~gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 133 AGIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCchhHHHHHHHHHHHHhc
Confidence 35555555456778899999999965
No 111
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=46.73 E-value=11 Score=38.31 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEEEecCCChhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
.+|..-+|-..+.+..++||||+|.+
T Consensus 126 ~gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 126 VGIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCccceeeeehHHHHHHhh
Confidence 35555666556778899999999964
No 112
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=44.70 E-value=26 Score=28.24 Aligned_cols=53 Identities=23% Similarity=0.609 Sum_probs=32.0
Q ss_pred CCCCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCcccccccccc---ccCcccccCCCcc
Q 014080 156 FSGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKE---QHHPKCDVCQNFI 229 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~---~f~pkC~~C~~~I 229 (431)
.....+|.-|+..|. +.+.|..| -.|..|+ -|.|+.||.- .....|..|+...
T Consensus 13 ~~~~qiCqiCGD~VG----~~~~Ge~F----VAC~eC~-------------FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 13 NLDGQFCEICGDQIG----LTVEGDLF----VACNECG-------------FPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp CCSSCBCSSSCCBCC----BCSSSSBC----CSCSSSC-------------CCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred ccCCCccccccCccc----cCCCCCEE----EeeeccC-------------ChhhHHHHHHHHhccCccccccCCcc
Confidence 446789999999885 33445443 2355554 3567777752 2334667776554
No 113
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.62 E-value=12 Score=28.06 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=23.9
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--------CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--------~pkC~~C~~~I~~~ 232 (431)
+.|..|...+.... ...=|..||..|....+ ...|..|+..|...
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQPL-SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSSCB-CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCCce-eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 34444444443321 12334567777765432 45788888777653
No 114
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=44.08 E-value=2.1 Score=32.71 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=26.8
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHHHHHHhhccccccccccchhhh
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 326 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~ 326 (431)
..|-.|+..|. | ....|.++|..|-.. .||...+|++|.+
T Consensus 11 L~CP~ck~~L~----~-~~~~g~LvC~~c~~~-----------------------YPI~dGIPvmL~~ 50 (67)
T 2jny_A 11 LACPKDKGPLR----Y-LESEQLLVNERLNLA-----------------------YRIDDGIPVLLID 50 (67)
T ss_dssp CBCTTTCCBCE----E-ETTTTEEEETTTTEE-----------------------EEEETTEECCCSS
T ss_pred hCCCCCCCcCe----E-eCCCCEEEcCCCCcc-----------------------ccCCCCEeeeChh
Confidence 56777877662 2 234677888776433 5777888988876
No 115
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=43.69 E-value=8 Score=30.52 Aligned_cols=45 Identities=16% Similarity=0.332 Sum_probs=24.7
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCcccc
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~pkC~~C~~~I~~ 231 (431)
+.|..|...+........=|..||..|..+.+ ...|..|+..+..
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45555555544322221345667777765432 3467777777764
No 116
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.05 E-value=16 Score=28.10 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.6
Q ss_pred CCCCCcCCCCCccccc
Q 014080 156 FSGYRICAGCNTEIGH 171 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~ 171 (431)
......|+-|...|..
T Consensus 12 ~~~i~~C~IC~~~i~~ 27 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQ 27 (74)
T ss_dssp SSSSCBCSSSCCBCSS
T ss_pred cCCCCcCcchhhHccc
Confidence 4567889999999853
No 117
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=42.60 E-value=10 Score=35.42 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=14.7
Q ss_pred cCC--ChhhhhhHHHHhhhHhH
Q 014080 396 YGL--PRLLTGSILAHEMMHAW 415 (431)
Q Consensus 396 ~gl--prl~~g~ilaHE~~Ha~ 415 (431)
||- |...+..++|||++|-+
T Consensus 173 ~g~~~~~~~~a~~~AHElGHnl 194 (257)
T 2ddf_A 173 YGKTILTKEADLVTTHELGHNF 194 (257)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccccceeeeeeeeehhhhc
Confidence 663 33447889999999965
No 118
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=41.84 E-value=41 Score=23.20 Aligned_cols=28 Identities=39% Similarity=0.399 Sum_probs=19.0
Q ss_pred HHHHHhhhhchhhHHHHHHHhhccCCCC
Q 014080 113 ERRARARAQLEEDEQLAKAIQDSLRVDS 140 (431)
Q Consensus 113 ~~~~ra~~~~~ede~Laralqes~~~~s 140 (431)
++...+..+-.||+-|.++|.++++.-.
T Consensus 17 EA~~vn~~eE~E~~llrKAIaESLn~~~ 44 (46)
T 2rr9_C 17 EAREVNSQEEEEEELLRKAIAESLNSCR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333466678888999999988643
No 119
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=41.61 E-value=8.1 Score=41.56 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.9
Q ss_pred hhhhHHHHhhhHhHh
Q 014080 402 LTGSILAHEMMHAWL 416 (431)
Q Consensus 402 ~~g~ilaHE~~Ha~l 416 (431)
..|+|+||||+|++=
T Consensus 500 ~iG~vigHEi~H~FD 514 (670)
T 3dwb_A 500 GIGVVVGHELTHAFD 514 (670)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhccC
Confidence 468899999999974
No 120
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=41.27 E-value=8.2 Score=36.28 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=18.2
Q ss_pred EEEEecCCChhh-----hhhHHHHhhhHhH
Q 014080 391 AILILYGLPRLL-----TGSILAHEMMHAW 415 (431)
Q Consensus 391 ~il~l~glprl~-----~g~ilaHE~~Ha~ 415 (431)
.|+|--||=..+ .-+|||||++|.-
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~~ 112 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHAV 112 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 566777765554 5679999999963
No 121
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=40.83 E-value=9.4 Score=33.01 Aligned_cols=12 Identities=42% Similarity=0.429 Sum_probs=10.3
Q ss_pred hhhHHHHhhhHh
Q 014080 403 TGSILAHEMMHA 414 (431)
Q Consensus 403 ~g~ilaHE~~Ha 414 (431)
.-.|++||++||
T Consensus 108 ~~~v~~HEiGHa 119 (160)
T 2jsd_A 108 LFTVAAHEFGHA 119 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHhHhh
Confidence 347899999998
No 122
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=40.42 E-value=16 Score=29.43 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=32.0
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCcccc
Q 014080 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (431)
Q Consensus 184 p~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~pkC~~C~~~I~~ 231 (431)
|.-|.|..|...+.+ ......|..||+.|-.+.+ ...|..|+.++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 667888888877765 3444578889888854432 3567777777664
No 123
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=40.06 E-value=18 Score=32.83 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.8
Q ss_pred hhhhhhHHHHhhhHhH
Q 014080 400 RLLTGSILAHEMMHAW 415 (431)
Q Consensus 400 rl~~g~ilaHE~~Ha~ 415 (431)
.+.+..++|||++|-+
T Consensus 133 ~~~~a~~~AHElGHnl 148 (214)
T 1r55_A 133 PIGAAATMAHEIGHSL 148 (214)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhc
Confidence 3566899999999964
No 124
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=39.41 E-value=12 Score=30.81 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=29.7
Q ss_pred cCCCCCCCCCcceeecCCcccccccccc---ccCcccccCCCcccc
Q 014080 189 CHSCNLPITDVEFSMSGNRPYHKHCYKE---QHHPKCDVCQNFIPT 231 (431)
Q Consensus 189 C~~C~~~L~~~~F~~~dg~pyC~~CY~~---~f~pkC~~C~~~I~~ 231 (431)
|..|+.|+....-...=...+|-.|+.. .-...|..|..+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6667777765443334446788888865 345689999999985
No 125
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=38.61 E-value=14 Score=29.85 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=6.1
Q ss_pred CccCCCCCccC
Q 014080 259 PRCCSCERMEP 269 (431)
Q Consensus 259 F~C~~C~r~l~ 269 (431)
+.|-.|...+.
T Consensus 51 ~~CP~Cr~~~~ 61 (115)
T 3l11_A 51 LCCPFCRRRVS 61 (115)
T ss_dssp SBCTTTCCBCH
T ss_pred CCCCCCCcccC
Confidence 34556666554
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=38.51 E-value=15 Score=33.93 Aligned_cols=46 Identities=7% Similarity=-0.007 Sum_probs=28.3
Q ss_pred CCcccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCcccc
Q 014080 185 ECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (431)
Q Consensus 185 ~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~~ 231 (431)
.-|.|..|...+.+ ......|..||..|-.+.+ +..|..|+.++..
T Consensus 207 ~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44666666665554 3333467788888865432 3348888888764
No 127
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=38.43 E-value=15 Score=27.40 Aligned_cols=44 Identities=18% Similarity=0.433 Sum_probs=24.2
Q ss_pred cccCCCCCCCCCcceeec-CCccccccccccccC----cccccCCCcccc
Q 014080 187 FRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQHH----PKCDVCQNFIPT 231 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~-dg~pyC~~CY~~~f~----pkC~~C~~~I~~ 231 (431)
+.|..|...+... .... =|..||..|..+.+. ..|..|...+..
T Consensus 16 ~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTDA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTTC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhCC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 4555555544432 2222 256777777655432 468888876543
No 128
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=38.40 E-value=10 Score=40.82 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=13.0
Q ss_pred hhhhHHHHhhhHhHh
Q 014080 402 LTGSILAHEMMHAWL 416 (431)
Q Consensus 402 ~~g~ilaHE~~Ha~l 416 (431)
..|+|+|||++|++-
T Consensus 523 ~iG~vigHEi~H~FD 537 (696)
T 1r1h_A 523 GIGMVIGHEITHGFD 537 (696)
T ss_dssp THHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhh
Confidence 479999999999973
No 129
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=38.39 E-value=21 Score=28.22 Aligned_cols=34 Identities=26% Similarity=0.634 Sum_probs=26.0
Q ss_pred CCCCcCCCCCcccccCceEeecCccccCCCcccC
Q 014080 157 SGYRICAGCNTEIGHGRYLSCMEAFWHPECFRCH 190 (431)
Q Consensus 157 ~~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~ 190 (431)
...-.|.-|.+.+.+..+|.+-...-|+-||-|+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 3456788888888766788887777888888875
No 130
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.36 E-value=13 Score=29.59 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=6.0
Q ss_pred Ccccccccccc
Q 014080 206 NRPYHKHCYKE 216 (431)
Q Consensus 206 g~pyC~~CY~~ 216 (431)
|..||..|...
T Consensus 40 gH~fC~~Ci~~ 50 (112)
T 1jm7_A 40 DHIFCKFCMLK 50 (112)
T ss_dssp SCCCCSHHHHH
T ss_pred CCHHHHHHHHH
Confidence 45566666543
No 131
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron transfer, Fe reduction, GEO sulfurreducens, cytochrome C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Probab=38.03 E-value=8.1 Score=34.15 Aligned_cols=91 Identities=12% Similarity=0.242 Sum_probs=45.7
Q ss_pred ccccccccc--ccCc--ccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCC---CCceEEcc--
Q 014080 208 PYHKHCYKE--QHHP--KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPR---DTKYLSLD-- 278 (431)
Q Consensus 208 pyC~~CY~~--~f~p--kC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~---g~~f~~l~-- 278 (431)
-+|..|... .|.+ .|..|...+.+.. |.+...+ +..|=+...|..=+.|..|..-+-. +..-+.+.
T Consensus 56 ~~C~~CH~g~~af~~~~~C~~CH~~~~~~~---i~~~~~~--~~V~F~H~~H~~~~~C~~CH~~v~~~~~~~~~~tm~~~ 130 (158)
T 3oue_A 56 KSCGACHNGKDAFSSASDCGKCHPGLKPAK---LTYKTSV--GEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADM 130 (158)
T ss_dssp CGGGGTBSSSSBCCTTSCHHHHCGGGCCCC---EEEEETT--EEEEECHHHHHTTCCGGGTBTTTBCSSTTSSCCCHHHH
T ss_pred CchhhhcCCcccCChhhhchhhhhcccccc---eEeecCC--CCccCChhHhCCCCChhhhccchhhcccCCCCcchhhh
Confidence 467777752 3443 6888887554432 2232100 0000011124433889999985411 11111111
Q ss_pred CCcccCcchhhcccCCCC--CCCcccH
Q 014080 279 DGRKLCLECLDSAIMDTH--ECQPLYL 303 (431)
Q Consensus 279 dG~~yC~~C~~~~v~~~~--~C~~C~~ 303 (431)
..-.+|..|.+-...++. .|.-|.+
T Consensus 131 ~~gk~Cg~CH~gk~Af~~~~~C~~CHk 157 (158)
T 3oue_A 131 EKGKSCGVCHNGKDAFSVADDCVKCHN 157 (158)
T ss_dssp HTTCGGGGTBTTTSBCCSSSCGGGTEE
T ss_pred hccChhHhhcCCCccCCCcccHHHHcc
Confidence 112589999974334543 7888863
No 132
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.74 E-value=11 Score=28.17 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=23.3
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--------CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--------HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--------~pkC~~C~~~I~~~ 232 (431)
+.|..|...+.... ...=|..||..|....+ ...|..|+..+...
T Consensus 20 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 20 VTCPICLELLKEPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TSCTTTCSCCSSCE-ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCcCCChhhCcce-eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34555544443322 22344566766665421 44677777777653
No 133
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=37.53 E-value=7.6 Score=28.37 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=30.9
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
..|..|...+..+...+.+.=|..||..|....+.....|--|..+|
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 61 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccc
Confidence 56778877664445555566678888888866544455677777544
No 134
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=37.38 E-value=18 Score=35.01 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=12.7
Q ss_pred hhhhhHHHHhhhHhH
Q 014080 401 LLTGSILAHEMMHAW 415 (431)
Q Consensus 401 l~~g~ilaHE~~Ha~ 415 (431)
+.+..++||||+|-+
T Consensus 141 ~~~a~t~AHElGHnl 155 (316)
T 2rjp_A 141 LQSAFTAAHQLGHVF 155 (316)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhhc
Confidence 577889999999954
No 135
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=37.18 E-value=20 Score=25.88 Aligned_cols=44 Identities=16% Similarity=0.474 Sum_probs=23.3
Q ss_pred ccCCCCCCCCCcceeecCCccccccccccc--cCcccccCCCcccc
Q 014080 188 RCHSCNLPITDVEFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (431)
Q Consensus 188 ~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~--f~pkC~~C~~~I~~ 231 (431)
.|..|...+........=|..||..|..+. ....|..|...|..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 344454444432222233455666666442 23578888887764
No 136
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=36.94 E-value=13 Score=27.75 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=6.8
Q ss_pred cccccCCCcccc
Q 014080 220 PKCDVCQNFIPT 231 (431)
Q Consensus 220 pkC~~C~~~I~~ 231 (431)
..|..|...+..
T Consensus 54 ~~CP~Cr~~~~~ 65 (79)
T 2egp_A 54 SSCPVCGISYSF 65 (79)
T ss_dssp CCCSSSCCCCCS
T ss_pred CcCCCCCCcCCH
Confidence 356666666553
No 137
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=36.91 E-value=23 Score=29.76 Aligned_cols=44 Identities=18% Similarity=0.412 Sum_probs=32.2
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
+.|..|...+. .. +.+.=|..||..|..........|.-|..+|
T Consensus 54 ~~C~iC~~~~~--~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFI--EA-VTLNCAHSFCSYCINEWMKRKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCS--SE-EEETTSCEEEHHHHHHHTTTCSBCTTTCCBC
T ss_pred CCCcccCcccC--Cc-eECCCCCCccHHHHHHHHHcCCcCCCCCCcC
Confidence 56888877662 33 3457788999999887666677888888766
No 138
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=36.90 E-value=11 Score=41.04 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.0
Q ss_pred hhhhHHHHhhhHhHh
Q 014080 402 LTGSILAHEMMHAWL 416 (431)
Q Consensus 402 ~~g~ilaHE~~Ha~l 416 (431)
..|+|+|||++|++=
T Consensus 522 ~iG~vIgHEi~HgFD 536 (699)
T 3zuk_A 522 GIGAVIGHEIGHGFD 536 (699)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhh
Confidence 468899999999984
No 139
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=36.77 E-value=18 Score=28.93 Aligned_cols=47 Identities=4% Similarity=-0.041 Sum_probs=30.5
Q ss_pred CCCcccCCCCCCCCCcceeecCC-cccccccccccc--CcccccCCCcccc
Q 014080 184 PECFRCHSCNLPITDVEFSMSGN-RPYHKHCYKEQH--HPKCDVCQNFIPT 231 (431)
Q Consensus 184 p~CF~C~~C~~~L~~~~F~~~dg-~pyC~~CY~~~f--~pkC~~C~~~I~~ 231 (431)
+.-|.|..|...+.+- .....| ..||+.|-.+.+ ...|..|+.++..
T Consensus 20 p~~~~CpI~~~~m~dP-V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP-VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCC-eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 5568888887776653 333455 888888865432 3467777776654
No 140
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.38 E-value=19 Score=26.37 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=17.0
Q ss_pred CCccccccccccc--cCcccccCCCcccc
Q 014080 205 GNRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (431)
Q Consensus 205 dg~pyC~~CY~~~--f~pkC~~C~~~I~~ 231 (431)
=|..||..|..+. ....|..|...|..
T Consensus 33 CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 33 CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3455666665542 23578888888764
No 141
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=36.36 E-value=11 Score=28.20 Aligned_cols=44 Identities=9% Similarity=0.153 Sum_probs=33.9
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCC-CCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD-THECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~-~~~C~~C~~~I 305 (431)
|.|..|...+ .++.. +.-|..||..|....+.. ...|--|..++
T Consensus 9 ~~C~IC~~~~--~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~ 53 (78)
T 1t1h_A 9 FRCPISLELM--KDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETL 53 (78)
T ss_dssp SSCTTTSCCC--SSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCccccc--cCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCC
Confidence 7899999877 34544 579999999999876654 66788888665
No 142
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=36.36 E-value=13 Score=29.83 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=20.9
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCccc
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIP 230 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~pkC~~C~~~I~ 230 (431)
+.|..|...+........=|..||..|....+ ...|..|...|.
T Consensus 16 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 55666655554422211445666666654322 134444444443
No 143
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=36.35 E-value=54 Score=22.48 Aligned_cols=27 Identities=41% Similarity=0.500 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhchhhHHHHHHHhhccC
Q 014080 111 EDERRARARAQLEEDEQLAKAIQDSLR 137 (431)
Q Consensus 111 e~~~~~ra~~~~~ede~Laralqes~~ 137 (431)
++++...+-.+-.||+-|.++|.++++
T Consensus 18 eQEA~~vn~~eE~EdellrKAIaESLn 44 (45)
T 3a1q_C 18 EQEAREVNNQEEKEEELLRKAIAESLN 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 333333333466678888899988875
No 144
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=36.32 E-value=19 Score=26.92 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=24.5
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCcccccCCCcccc
Q 014080 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (431)
Q Consensus 188 ~C~~C~~~L~~~~F~~~dg~p-yC~~CY~~~f~pkC~~C~~~I~~ 231 (431)
.|..|...+....+. .=|.. +|..|.... .+|..|...|..
T Consensus 26 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIAIVFV-PCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCEEEc-CCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 444554444432232 23444 777776654 789999998875
No 145
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=36.28 E-value=17 Score=28.13 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=32.0
Q ss_pred CCCcccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCcccc
Q 014080 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPT 231 (431)
Q Consensus 184 p~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~pkC~~C~~~I~~ 231 (431)
+.-|.|..|...+.+ ......|..||+.|-.+.+ ...|..|+.++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456888888877765 3444578889988865432 3567777777664
No 146
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=36.14 E-value=12 Score=32.52 Aligned_cols=10 Identities=40% Similarity=0.547 Sum_probs=9.3
Q ss_pred hHHHHhhhHh
Q 014080 405 SILAHEMMHA 414 (431)
Q Consensus 405 ~ilaHE~~Ha 414 (431)
.|++||++||
T Consensus 113 ~va~HEiGHa 122 (159)
T 2ovx_A 113 LVAAHQFGHA 122 (159)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 6999999997
No 147
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=35.29 E-value=11 Score=29.61 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=34.2
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
+.|..|...+. .......=|..||..|....+.....|--|..++
T Consensus 23 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 67 (99)
T 2y43_A 23 LRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67 (99)
T ss_dssp TBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccCChhhC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcC
Confidence 67999988763 3434336789999999988766677899898766
No 148
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=35.24 E-value=15 Score=34.04 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=15.7
Q ss_pred hhhhHHHHhhhHhHhh-hcCCC
Q 014080 402 LTGSILAHEMMHAWLR-LKGFI 422 (431)
Q Consensus 402 ~~g~ilaHE~~Ha~lr-l~g~~ 422 (431)
+..+|+.||++|+|.- ..|.+
T Consensus 47 l~~~v~~HElgH~~~A~~~G~~ 68 (224)
T 3b4r_A 47 LFVSVVLHELGHSYVAKKYGVK 68 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCc
Confidence 5668899999999873 33654
No 149
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.23 E-value=14 Score=27.97 Aligned_cols=43 Identities=21% Similarity=0.578 Sum_probs=23.5
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCccc
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIP 230 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~pkC~~C~~~I~ 230 (431)
+.|..|...+.. .....=|..||..|..+.+ ...|..|...+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 344444444433 1222345667777765432 357888888875
No 150
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=35.21 E-value=19 Score=32.65 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.1
Q ss_pred hhhhhHHHHhhhHhH
Q 014080 401 LLTGSILAHEMMHAW 415 (431)
Q Consensus 401 l~~g~ilaHE~~Ha~ 415 (431)
+....++|||++|-+
T Consensus 139 ~~~a~~~AHElGHnl 153 (217)
T 3b8z_A 139 LHAAFTVAHEIGHLL 153 (217)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred cchhhhhHhhhhhhc
Confidence 356789999999954
No 151
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=35.15 E-value=13 Score=29.79 Aligned_cols=45 Identities=11% Similarity=0.238 Sum_probs=34.6
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
+.|..|...+ ........=|..||..|....+.....|--|..+|
T Consensus 16 ~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 16 LMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60 (108)
T ss_dssp TBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBS
T ss_pred CCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccc
Confidence 6899998876 33544337899999999988766678898888765
No 152
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.65 E-value=21 Score=28.12 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=7.5
Q ss_pred CcCCCCCcccc
Q 014080 160 RICAGCNTEIG 170 (431)
Q Consensus 160 ~~C~~C~k~I~ 170 (431)
..|..|..+|.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 46777777764
No 153
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.58 E-value=8.4 Score=28.55 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=30.9
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
..|..|...+..+.....+.=|..||..|....+.....|--|..+|
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBC
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccc
Confidence 56777777765555555456677888888866544455677777655
No 154
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=34.21 E-value=13 Score=32.32 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=24.1
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCccc
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIP 230 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~ 230 (431)
+.|..|...+........=|..||..|..+.+ ...|..|...|.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 56777766665422222446677777765432 234555555553
No 155
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=33.62 E-value=25 Score=35.44 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=16.3
Q ss_pred EEEEecCCChhhhhhHHHHhhhHhH
Q 014080 391 AILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 391 ~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
+|.-.++--.+.+..++||||+|-+
T Consensus 127 gv~~d~~~~~~~~a~t~AHElGHnl 151 (397)
T 3k7n_A 127 AIVQDYNRRISLVASTITHELGHNL 151 (397)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred EEEeecCCccchhhhhHHHHHHHHc
Confidence 4443444334567788999999953
No 156
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=33.52 E-value=12 Score=25.75 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=26.7
Q ss_pred CccCCCCCccCCC-CceEEccCCcccCcchhhcccCCCCCCCcccHH
Q 014080 259 PRCCSCERMEPRD-TKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 304 (431)
Q Consensus 259 F~C~~C~r~l~~g-~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~ 304 (431)
+.|..|...+..+ ...+.+.=|..||..|..+.+.....|--|..+
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCc
Confidence 4677777665322 234455667777888876644444556655543
No 157
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=33.20 E-value=23 Score=35.95 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=16.3
Q ss_pred EEEEecCCChhhhhhHHHHhhhHhH
Q 014080 391 AILILYGLPRLLTGSILAHEMMHAW 415 (431)
Q Consensus 391 ~il~l~glprl~~g~ilaHE~~Ha~ 415 (431)
+|.-.++--.+.+..|+||||+|-+
T Consensus 132 gv~~d~~~~~~~~a~t~AHElGHnl 156 (422)
T 3k7l_A 132 AVVQDYSSRTRMVAITMAHEMGHNL 156 (422)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEeecCCcchhhhHHHHHHHHHHc
Confidence 3433444334567788999999953
No 158
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.11 E-value=13 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.437 Sum_probs=24.5
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~pkC~~C~~~I~~~ 232 (431)
+.|..|...+.. ....=|..||..|..+.+ ...|..|...|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 344555444443 222344556766665432 35788888887754
No 159
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=33.09 E-value=11 Score=41.78 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=11.5
Q ss_pred hhHHHHhhhHhHh
Q 014080 404 GSILAHEMMHAWL 416 (431)
Q Consensus 404 g~ilaHE~~Ha~l 416 (431)
..|+|||++|.|.
T Consensus 288 ~~vIaHElAHqWf 300 (867)
T 2gtq_A 288 ESVVGHEYFHNWT 300 (867)
T ss_dssp HHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHhc
Confidence 4889999999994
No 160
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=32.67 E-value=23 Score=35.07 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=12.4
Q ss_pred hhhhhHHHHhhhHhH
Q 014080 401 LLTGSILAHEMMHAW 415 (431)
Q Consensus 401 l~~g~ilaHE~~Ha~ 415 (431)
+.+..++||||+|-+
T Consensus 141 ~~~a~~~AHElGHnl 155 (378)
T 2rjq_A 141 LHAAFTVAHEIGHLL 155 (378)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhc
Confidence 467889999999954
No 161
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=32.24 E-value=16 Score=31.96 Aligned_cols=10 Identities=40% Similarity=0.640 Sum_probs=9.5
Q ss_pred hHHHHhhhHh
Q 014080 405 SILAHEMMHA 414 (431)
Q Consensus 405 ~ilaHE~~Ha 414 (431)
.|++||++||
T Consensus 117 ~v~~HEiGHa 126 (167)
T 2xs4_A 117 TVAAHEIGHL 126 (167)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHh
Confidence 7999999998
No 162
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=32.13 E-value=16 Score=32.10 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=9.8
Q ss_pred hhHHHHhhhHh
Q 014080 404 GSILAHEMMHA 414 (431)
Q Consensus 404 g~ilaHE~~Ha 414 (431)
-.|++||++||
T Consensus 112 ~~v~~HEiGHa 122 (168)
T 1cge_A 112 HRVAAHELGHS 122 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhHhHhh
Confidence 47899999998
No 163
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.11 E-value=21 Score=26.74 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=25.0
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCcccccCCCcccc
Q 014080 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (431)
Q Consensus 188 ~C~~C~~~L~~~~F~~~dg~p-yC~~CY~~~f~pkC~~C~~~I~~ 231 (431)
.|..|...+....+. .=|.. +|..|... ..+|..|..+|..
T Consensus 27 ~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~--~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAIVFV-PCGHLVTCKQCAEA--VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCBCCS-SSCCCCBCHHHHHH--CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCEEEe-cCCCHHHHHHHhhC--CCCCccCCceecC
Confidence 455554444433332 23444 78888754 3789999999875
No 164
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=32.07 E-value=29 Score=33.77 Aligned_cols=28 Identities=36% Similarity=0.228 Sum_probs=22.3
Q ss_pred EEEEecCCChhhhhhHHHHhhhHhHhhh
Q 014080 391 AILILYGLPRLLTGSILAHEMMHAWLRL 418 (431)
Q Consensus 391 ~il~l~glprl~~g~ilaHE~~Ha~lrl 418 (431)
.|+|=-.++.-..--.||||++|.+|--
T Consensus 84 ~I~LN~~~~~~rqrFTLAHELGHllLh~ 111 (301)
T 3dte_A 84 VILINSQVRPERQRFTLAHEISHALLLG 111 (301)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhcc
Confidence 3556666788888889999999999854
No 165
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=32.05 E-value=11 Score=41.38 Aligned_cols=14 Identities=36% Similarity=1.061 Sum_probs=11.9
Q ss_pred hhhHHHHhhhHhHh
Q 014080 403 TGSILAHEMMHAWL 416 (431)
Q Consensus 403 ~g~ilaHE~~Ha~l 416 (431)
...++|||++|.|.
T Consensus 259 ~~~viaHElaHqWf 272 (780)
T 1z5h_A 259 SANVIAHEIAHQWF 272 (780)
T ss_dssp HHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHh
Confidence 34789999999995
No 166
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.97 E-value=13 Score=34.92 Aligned_cols=48 Identities=25% Similarity=0.773 Sum_probs=30.1
Q ss_pred CCCcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCcceeecCCccccccccccc----cCcccccCCCccccC
Q 014080 158 GYRICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ----HHPKCDVCQNFIPTN 232 (431)
Q Consensus 158 ~~~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~----f~pkC~~C~~~I~~~ 232 (431)
....|..|+..|..| .+|..|+. .+|..|+.+. -.++|..|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g--------------~~C~~C~~-------------~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--------------QSCETCGI-------------RMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC--------------EECSSSCC-------------EECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC--------------cccCccCh-------------HHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 477899999988633 44555542 2333444332 246899999988764
No 167
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=31.54 E-value=25 Score=33.59 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.4
Q ss_pred hhhhhHHHHhhhHhH
Q 014080 401 LLTGSILAHEMMHAW 415 (431)
Q Consensus 401 l~~g~ilaHE~~Ha~ 415 (431)
+.+..++||||+|-+
T Consensus 141 ~~~a~t~AHElGHnl 155 (300)
T 2v4b_A 141 LQAAFTTAHELGHVF 155 (300)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred ccceehhhhhhhhhc
Confidence 457899999999964
No 168
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.52 E-value=22 Score=26.98 Aligned_cols=40 Identities=13% Similarity=0.280 Sum_probs=26.4
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHHHHHHhhccccccccccchhhh
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 326 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~ 326 (431)
..|-.|+..|. +....|.++|..|-.. .||...+|++|.+
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGDRLA-----------------------FPIKDGIPMMLES 48 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 46777777662 2234577778776432 5777888988876
No 169
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=31.50 E-value=13 Score=29.03 Aligned_cols=47 Identities=11% Similarity=0.082 Sum_probs=30.9
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
..|..|...+..+.....+.=|..||..|...-+.....|--|..+|
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccC
Confidence 46777776665555555556677788888776555556677776443
No 170
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=30.98 E-value=17 Score=32.03 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=9.8
Q ss_pred hhHHHHhhhHh
Q 014080 404 GSILAHEMMHA 414 (431)
Q Consensus 404 g~ilaHE~~Ha 414 (431)
-.|++||++||
T Consensus 114 ~~v~~HEiGHa 124 (173)
T 1hy7_A 114 FLVAAHEIGHS 124 (173)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHHHHh
Confidence 47899999998
No 171
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.90 E-value=19 Score=28.27 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=9.4
Q ss_pred CCCccCCCCCccC
Q 014080 257 GTPRCCSCERMEP 269 (431)
Q Consensus 257 ~CF~C~~C~r~l~ 269 (431)
.-|.|..|++.+.
T Consensus 79 ~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 79 KVLKCMYCGHSFE 91 (115)
T ss_dssp SSCBCSSSCCBCS
T ss_pred cceECCCCCCccC
Confidence 3478888888763
No 172
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.81 E-value=19 Score=26.17 Aligned_cols=43 Identities=23% Similarity=0.536 Sum_probs=32.9
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
+.|..|...+.. +.+.=|..+|..|....+.....|--|..+|
T Consensus 16 ~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 16 EECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58 (70)
T ss_dssp CCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCT
T ss_pred CCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcc
Confidence 678888876632 4457889999999988666677888887666
No 173
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=30.66 E-value=13 Score=41.47 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=11.5
Q ss_pred hhHHHHhhhHhHh
Q 014080 404 GSILAHEMMHAWL 416 (431)
Q Consensus 404 g~ilaHE~~Ha~l 416 (431)
..|+|||++|.|.
T Consensus 296 ~~vIAHElAHQWF 308 (889)
T 3ebh_A 296 LTVVGHEYFHQYT 308 (889)
T ss_dssp HHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHHh
Confidence 4789999999994
No 174
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=30.65 E-value=9.9 Score=34.84 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=9.6
Q ss_pred ecCCcccccccccc
Q 014080 203 MSGNRPYHKHCYKE 216 (431)
Q Consensus 203 ~~dg~pyC~~CY~~ 216 (431)
..+|+++|..|+.+
T Consensus 189 ~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 189 LLNGKPVCKPDYYG 202 (204)
T ss_dssp EETTEEECHHHHHC
T ss_pred eeCCcEEChhhhcc
Confidence 35677788888754
No 175
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.57 E-value=19 Score=27.29 Aligned_cols=28 Identities=11% Similarity=0.402 Sum_probs=18.0
Q ss_pred CCcccccccccccc-----CcccccCCCccccC
Q 014080 205 GNRPYHKHCYKEQH-----HPKCDVCQNFIPTN 232 (431)
Q Consensus 205 dg~pyC~~CY~~~f-----~pkC~~C~~~I~~~ 232 (431)
=|..||..|..+.+ ..+|..|...+...
T Consensus 37 CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 37 CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 35567777766532 25788888877654
No 176
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.06 E-value=18 Score=26.58 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=34.1
Q ss_pred CCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 258 CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
-+.|..|...+ ... +.+.=|..||..|....+.....|--|..+|
T Consensus 15 ~~~C~IC~~~~--~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 15 VPECAICLQTC--VHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp CCBCSSSSSBC--SSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCccCCccc--CCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 36788998766 223 3456889999999988766678899998776
No 177
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=29.80 E-value=18 Score=29.70 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=16.7
Q ss_pred Ccccccccccccc---CcccccCCCcccc
Q 014080 206 NRPYHKHCYKEQH---HPKCDVCQNFIPT 231 (431)
Q Consensus 206 g~pyC~~CY~~~f---~pkC~~C~~~I~~ 231 (431)
|..||..|....+ ...|..|...|..
T Consensus 71 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 71 QHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567777765433 2378888887765
No 178
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.75 E-value=23 Score=26.87 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=26.6
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHHHHHHhhccccccccccchhhh
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 326 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~ 326 (431)
..|-.|+..|. +....|.++|..|-.. .||...+|++|.+
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 9 LVCPVTKGRLE-----YHQDKQELWSRQAKLA-----------------------YPIKDGIPYMLEN 48 (68)
T ss_dssp CBCSSSCCBCE-----EETTTTEEEETTTTEE-----------------------EEEETTEECCCTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCCCcE-----------------------ecCCCCeeeeChh
Confidence 57778887662 2234567778776432 5777888888876
No 179
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.62 E-value=12 Score=41.84 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=11.2
Q ss_pred hhHHHHhhhHhHh
Q 014080 404 GSILAHEMMHAWL 416 (431)
Q Consensus 404 g~ilaHE~~Ha~l 416 (431)
-.|+|||++|.|.
T Consensus 317 ~~viaHElAHqWF 329 (909)
T 4fke_A 317 VTVIAHELAHQWF 329 (909)
T ss_dssp HHHHHHHHHTTTB
T ss_pred HHHHHHHHHhhhh
Confidence 3689999999995
No 180
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.35 E-value=23 Score=27.04 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=27.1
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHHHHHHhhccccccccccchhhh
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 326 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~ 326 (431)
..|-.|+..|. +....|.++|..|-.. .||...+|++|.+
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (70)
T 2js4_A 9 LVCPVCKGRLE-----FQRAQAELVCNADRLA-----------------------FPVRDGVPIMLEA 48 (70)
T ss_dssp CBCTTTCCBEE-----EETTTTEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eECCCCCCcCE-----EeCCCCEEEcCCCCce-----------------------ecCCCCeeeeChh
Confidence 57888887662 2234567778776432 5777889988876
No 181
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.26 E-value=1.2e+02 Score=22.24 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=9.8
Q ss_pred cccccCCCccccC
Q 014080 220 PKCDVCQNFIPTN 232 (431)
Q Consensus 220 pkC~~C~~~I~~~ 232 (431)
..|..|...|...
T Consensus 53 ~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 53 DSCPVCRKSLTGQ 65 (78)
T ss_dssp CSCTTTCCCCCCS
T ss_pred CcCcCcCCccCCc
Confidence 4688888888764
No 182
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=29.10 E-value=23 Score=27.13 Aligned_cols=46 Identities=17% Similarity=0.499 Sum_probs=27.1
Q ss_pred cccCCCCCCCCC--cceee-cCCcccccccccccc---CcccccCCCccccC
Q 014080 187 FRCHSCNLPITD--VEFSM-SGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~--~~F~~-~dg~pyC~~CY~~~f---~pkC~~C~~~I~~~ 232 (431)
+.|..|-.++.. ..|.. .=|..+|..|+.+.. ...|..|.+++...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 456666555532 12221 145667888876543 45788888888764
No 183
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=28.72 E-value=16 Score=28.95 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=25.9
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc--C-cccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH--H-PKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f--~-pkC~~C~~~I~~~ 232 (431)
+.|..|...+........=|..||..|..+.+ . ..|..|...+...
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 45566655554322213345677887776432 2 4688888777643
No 184
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=28.43 E-value=16 Score=38.63 Aligned_cols=12 Identities=42% Similarity=1.107 Sum_probs=10.8
Q ss_pred hHHHHhhhHhHh
Q 014080 405 SILAHEMMHAWL 416 (431)
Q Consensus 405 ~ilaHE~~Ha~l 416 (431)
.|+|||++|.|.
T Consensus 289 ~viaHElAHqWf 300 (608)
T 3u9w_A 289 NVIAHEISHSWT 300 (608)
T ss_dssp HHHHHHHHTTTB
T ss_pred HHHHHHhhhhhh
Confidence 589999999995
No 185
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=28.16 E-value=16 Score=40.89 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=11.5
Q ss_pred hhHHHHhhhHhHh
Q 014080 404 GSILAHEMMHAWL 416 (431)
Q Consensus 404 g~ilaHE~~Ha~l 416 (431)
-.|+|||++|.|.
T Consensus 313 ~~vIAHElAHqWF 325 (891)
T 3b34_A 313 ERVIGHEYFHNWT 325 (891)
T ss_dssp HHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHHh
Confidence 4889999999994
No 186
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.02 E-value=18 Score=26.00 Aligned_cols=46 Identities=11% Similarity=0.268 Sum_probs=27.9
Q ss_pred cccCCCCC-CCCCcc---eeecCCcccccccccccc---CcccccCCCccccC
Q 014080 187 FRCHSCNL-PITDVE---FSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~-~L~~~~---F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~~~ 232 (431)
+.|..|.. .+.... ....=|..||..|..+.+ ...|..|+..+..+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45666655 332221 223456778888876552 35799999988764
No 187
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=27.92 E-value=95 Score=24.99 Aligned_cols=97 Identities=14% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCCcCCCCCcccccCceEeec--CccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCccccCCcc
Q 014080 158 GYRICAGCNTEIGHGRYLSCM--EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFIPTNSAG 235 (431)
Q Consensus 158 ~~~~C~~C~k~I~~g~~v~al--gk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I~~~~~~ 235 (431)
....|..|+..-.....|... ++.||+.|..=.. .+ ...+.-+|..|. .|.+|++.-....
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~~-- 68 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDSK-- 68 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCTT--
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCCC--
Confidence 346788888653212335443 4789998874321 11 134567788774 5889988754321
Q ss_pred eEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 236 LIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 236 ~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
++ .=. .|+..||..|..= ++ . .+..|.++|..|...
T Consensus 69 ll-~Cd-------~C~~~yH~~Cl~p-----pl--~----~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 69 ML-VCD-------TCDKGYHTFCLQP-----VM--K----SVPTNGWKCKNCRIC 104 (111)
T ss_dssp EE-ECS-------SSCCEEEGGGSSS-----CC--S----SCCSSCCCCHHHHCC
T ss_pred ee-ECC-------CCCcHHhHHhcCC-----cc--c----cCCCCCcCCcCCcCc
Confidence 22 211 3666677554421 12 1 123578999999754
No 188
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=27.88 E-value=21 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=22.3
Q ss_pred ccCCCCCCCCCcceeecCCcccc-cccccc
Q 014080 188 RCHSCNLPITDVEFSMSGNRPYH-KHCYKE 216 (431)
Q Consensus 188 ~C~~C~~~L~~~~F~~~dg~pyC-~~CY~~ 216 (431)
.|..|+..++...-+.++|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 46788888887777778999998 677553
No 189
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=27.67 E-value=37 Score=27.48 Aligned_cols=70 Identities=19% Similarity=0.504 Sum_probs=36.6
Q ss_pred CcCCCCCcccccCceEeecCccccCCCcccCCCCCCCCCc------ceeecCCccccccccccc--cCcccccCCCcccc
Q 014080 160 RICAGCNTEIGHGRYLSCMEAFWHPECFRCHSCNLPITDV------EFSMSGNRPYHKHCYKEQ--HHPKCDVCQNFIPT 231 (431)
Q Consensus 160 ~~C~~C~k~I~~g~~v~algk~wHp~CF~C~~C~~~L~~~------~F~~~dg~pyC~~CY~~~--f~pkC~~C~~~I~~ 231 (431)
..|..|.+.+........ ..-..=+.|..|...+... .....=|..||..|..+. ....|..|...|..
T Consensus 49 ~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 467777777743333221 1223445667776655421 022234566777666532 23467777777765
Q ss_pred C
Q 014080 232 N 232 (431)
Q Consensus 232 ~ 232 (431)
+
T Consensus 126 ~ 126 (133)
T 4ap4_A 126 K 126 (133)
T ss_dssp G
T ss_pred h
Confidence 4
No 190
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=27.58 E-value=20 Score=32.71 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=9.3
Q ss_pred hHHHHhhhHhH
Q 014080 405 SILAHEMMHAW 415 (431)
Q Consensus 405 ~ilaHE~~Ha~ 415 (431)
.++.||+|||-
T Consensus 89 g~i~HEl~Hal 99 (201)
T 3edh_A 89 GIVVHELGHVV 99 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHHh
Confidence 58899999983
No 191
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=27.43 E-value=21 Score=31.10 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=9.9
Q ss_pred hhHHHHhhhHh
Q 014080 404 GSILAHEMMHA 414 (431)
Q Consensus 404 g~ilaHE~~Ha 414 (431)
-.|++||++||
T Consensus 114 ~~v~~HEiGHa 124 (165)
T 1hv5_A 114 LQVAAHEFGHV 124 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHHhHhh
Confidence 57999999997
No 192
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.32 E-value=13 Score=28.18 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=31.7
Q ss_pred CccCCCCCccCCCCc-eEEccCCcccCcchhhcccCC---CCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTK-YLSLDDGRKLCLECLDSAIMD---THECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~-f~~l~dG~~yC~~C~~~~v~~---~~~C~~C~~~I 305 (431)
+.|..|...+..+.. .+.+.=|..+|..|....+.. ...|--|..++
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 678888887744332 345577889999998765433 25777777654
No 193
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=27.27 E-value=24 Score=30.53 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=31.8
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~~~ 232 (431)
|.|..|...+... ....-|..||..|..+.+ ..+|..|...|..+
T Consensus 19 ~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 6777777776653 334677888888887654 24899998888764
No 194
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.68 E-value=11 Score=28.12 Aligned_cols=47 Identities=13% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHH
Q 014080 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLE 304 (431)
Q Consensus 258 CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~ 304 (431)
-..|..|...+..+.....+.=|..||..|...-+.....|--|..+
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~ 69 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCc
Confidence 35677777666444444545566777777776544444556666543
No 195
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.52 E-value=25 Score=26.78 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=25.9
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHHHHHHhhccccccccccchhhh
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPLLLVE 326 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I~~f~~~l~~~~~~~~pl~lv~ 326 (431)
..|-.|+..|. +....|.++|..|-.. .||...+|++|.+
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~cg~~-----------------------YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 9 LACPICKGPLK-----LSADKTELISKGAGLA-----------------------YPIRDGIPVMLES 48 (69)
T ss_dssp CCCTTTCCCCE-----ECTTSSEEEETTTTEE-----------------------EEEETTEECCCGG
T ss_pred eeCCCCCCcCe-----EeCCCCEEEcCCCCcE-----------------------ecCcCCeeeeChh
Confidence 56777777662 2223567777776432 5777888888876
No 196
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=26.47 E-value=22 Score=32.41 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=9.5
Q ss_pred hhHHHHhhhHh
Q 014080 404 GSILAHEMMHA 414 (431)
Q Consensus 404 g~ilaHE~~Ha 414 (431)
-.++.||+|||
T Consensus 94 ~g~i~HEl~Ha 104 (199)
T 3lqb_A 94 SGIAQHELNHA 104 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 36889999998
No 197
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=26.32 E-value=24 Score=28.35 Aligned_cols=45 Identities=7% Similarity=-0.068 Sum_probs=34.4
Q ss_pred CCccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 258 TPRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 258 CF~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
-|.|..|..++ .++.+ +..|..||..|...-+.....|--|..++
T Consensus 29 ~~~CpI~~~~m--~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l 73 (100)
T 2kre_A 29 EFRDPLMDTLM--TDPVR-LPSGTIMDRSIILRHLLNSPTDPFNRQTL 73 (100)
T ss_dssp TTBCTTTCSBC--SSEEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCBC
T ss_pred hhCCcCccCcc--cCCeE-CCCCCEEchHHHHHHHHcCCCCCCCCCCC
Confidence 38999999877 45655 46999999999887666566777777544
No 198
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=26.25 E-value=27 Score=28.19 Aligned_cols=45 Identities=16% Similarity=0.329 Sum_probs=30.6
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~~~ 232 (431)
|.|..|...+... ....=|..||..|..+.+ ...|..|...|...
T Consensus 24 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILADP-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcCc-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 5677776666542 334567788888876543 45799999988764
No 199
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=26.17 E-value=23 Score=30.88 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=10.0
Q ss_pred hhHHHHhhhHh
Q 014080 404 GSILAHEMMHA 414 (431)
Q Consensus 404 g~ilaHE~~Ha 414 (431)
..|++||++||
T Consensus 113 ~~v~~HE~GHa 123 (163)
T 1i76_A 113 FLVAAHEFGHS 123 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHhhhh
Confidence 57999999998
No 200
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.09 E-value=12 Score=27.68 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=31.8
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
+.|..|...+. .......=|..||..|....+.....|--|..+|
T Consensus 16 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 60 (72)
T 2djb_A 16 ILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60 (72)
T ss_dssp GSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCC
T ss_pred CCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCccc
Confidence 67888887662 3433336788999999977655566788888655
No 201
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=26.04 E-value=25 Score=33.50 Aligned_cols=15 Identities=47% Similarity=0.942 Sum_probs=12.0
Q ss_pred hhhHHHHhhhHhHhhh
Q 014080 403 TGSILAHEMMHAWLRL 418 (431)
Q Consensus 403 ~g~ilaHE~~Ha~lrl 418 (431)
.|.+|+||++| ||=|
T Consensus 162 ~g~TltHEvGH-~LGL 176 (262)
T 2cki_A 162 KGRTATHEIGH-WLNL 176 (262)
T ss_dssp SSHHHHHHHHH-HTTC
T ss_pred ccchhhhhhhh-hhcc
Confidence 48999999999 4544
No 202
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=25.34 E-value=15 Score=28.28 Aligned_cols=43 Identities=19% Similarity=0.439 Sum_probs=24.4
Q ss_pred CcccCCCCCCCCCcceeec-CCcccccccccccc----CcccccCCCcc
Q 014080 186 CFRCHSCNLPITDVEFSMS-GNRPYHKHCYKEQH----HPKCDVCQNFI 229 (431)
Q Consensus 186 CF~C~~C~~~L~~~~F~~~-dg~pyC~~CY~~~f----~pkC~~C~~~I 229 (431)
-|.|..|...+.. ..... =|..||..|....+ ...|..|...+
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3566666655543 22233 26778887765433 24677776665
No 203
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.33 E-value=25 Score=31.57 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=29.8
Q ss_pred CCCcccCCCCCCCCCcceeecCCccccccccccc---cCcccccCCCcccc
Q 014080 184 PECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQ---HHPKCDVCQNFIPT 231 (431)
Q Consensus 184 p~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~---f~pkC~~C~~~I~~ 231 (431)
|.-|.|..|...+.+ ......|..||..|-... .+..|..|+.++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 344667777666654 334457788888875542 23458888887765
No 204
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=25.15 E-value=22 Score=37.64 Aligned_cols=12 Identities=42% Similarity=1.104 Sum_probs=11.1
Q ss_pred hHHHHhhhHhHh
Q 014080 405 SILAHEMMHAWL 416 (431)
Q Consensus 405 ~ilaHE~~Ha~l 416 (431)
.++|||++|.|.
T Consensus 296 ~viaHElaHqWf 307 (605)
T 3cia_A 296 NLIAHELAHSWS 307 (605)
T ss_dssp HHHHHHHHHTTB
T ss_pred HHHHHHHHHHhh
Confidence 699999999995
No 205
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=25.04 E-value=24 Score=30.45 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=15.4
Q ss_pred Ccccccccccccc---CcccccCCCccccC
Q 014080 206 NRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (431)
Q Consensus 206 g~pyC~~CY~~~f---~pkC~~C~~~I~~~ 232 (431)
|..||..|....+ ...|..|...|...
T Consensus 97 gH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 97 FHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp SCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3456666654432 23677777777643
No 206
>3e4x_A APC36150; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus} PDB: 3gor_A
Probab=24.54 E-value=47 Score=27.45 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.9
Q ss_pred hhhhHHHHhhhH-----hHhhhcCCCCCc
Q 014080 402 LTGSILAHEMMH-----AWLRLKGFICFK 425 (431)
Q Consensus 402 ~~g~ilaHE~~H-----a~lrl~g~~~l~ 425 (431)
+...++.|+..| +|||+.|++..+
T Consensus 123 ~l~~~~~H~~hH~GQi~~~lr~~G~~~~~ 151 (157)
T 3e4x_A 123 FLQLAMDHEIHHKGQLFVYVRGMGHTDLP 151 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCCCc
Confidence 445778999977 899999998776
No 207
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=24.50 E-value=9.6 Score=39.10 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=11.2
Q ss_pred CCCcCCCCCcccccCce
Q 014080 158 GYRICAGCNTEIGHGRY 174 (431)
Q Consensus 158 ~~~~C~~C~k~I~~g~~ 174 (431)
..-.|--|++.+...++
T Consensus 399 ~~~~~~~c~~~l~~~~~ 415 (523)
T 3py7_A 399 SGLDCLWCREPLTEVDA 415 (523)
T ss_dssp TTCEETTTCCBCCHHHH
T ss_pred CCcEEEecCCcCCHHHH
Confidence 45578888888754333
No 208
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=24.35 E-value=26 Score=28.52 Aligned_cols=45 Identities=18% Similarity=0.459 Sum_probs=29.3
Q ss_pred cccCCCCCCCCCcceeecCCcccccccccccc---CcccccCCCccccC
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQH---HPKCDVCQNFIPTN 232 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f---~pkC~~C~~~I~~~ 232 (431)
|.|..|...+... ....=|..||..|..+.+ ...|..|...|...
T Consensus 19 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCe-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 5666666655542 333456778888876533 23899999888764
No 209
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=24.08 E-value=1.1e+02 Score=25.29 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=13.7
Q ss_pred cccccccccc--cCcccccCCCcccc
Q 014080 208 PYHKHCYKEQ--HHPKCDVCQNFIPT 231 (431)
Q Consensus 208 pyC~~CY~~~--f~pkC~~C~~~I~~ 231 (431)
.||..|..+. ....|..|..+|..
T Consensus 74 ~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 74 SFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp EEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4444444321 23468888888764
No 210
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=24.03 E-value=27 Score=30.66 Aligned_cols=11 Identities=36% Similarity=0.289 Sum_probs=9.7
Q ss_pred hhHHHHhhhHh
Q 014080 404 GSILAHEMMHA 414 (431)
Q Consensus 404 g~ilaHE~~Ha 414 (431)
-.|++||++||
T Consensus 115 ~~~~~HE~gH~ 125 (167)
T 3ayu_A 115 FLVAAHAFGHA 125 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehhhhhHHh
Confidence 37999999997
No 211
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=23.90 E-value=22 Score=39.97 Aligned_cols=14 Identities=36% Similarity=0.968 Sum_probs=12.0
Q ss_pred hhhHHHHhhhHhHh
Q 014080 403 TGSILAHEMMHAWL 416 (431)
Q Consensus 403 ~g~ilaHE~~Ha~l 416 (431)
...++|||++|.|.
T Consensus 364 ~~~vIaHElAHqWF 377 (967)
T 3se6_A 364 VTRVIAHELAHQWF 377 (967)
T ss_dssp HHHHHHHHHGGGTB
T ss_pred HHHHHHHHHHHHHh
Confidence 35799999999995
No 212
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=23.69 E-value=27 Score=33.03 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=9.8
Q ss_pred hhHHHHhhhHh
Q 014080 404 GSILAHEMMHA 414 (431)
Q Consensus 404 g~ilaHE~~Ha 414 (431)
-.|++||++||
T Consensus 196 ~~va~HEiGHa 206 (255)
T 1slm_A 196 FLVAAHEIGHS 206 (255)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhHHHHHHH
Confidence 37999999998
No 213
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.68 E-value=36 Score=27.76 Aligned_cols=10 Identities=20% Similarity=0.640 Sum_probs=6.7
Q ss_pred CcCCCCCccc
Q 014080 160 RICAGCNTEI 169 (431)
Q Consensus 160 ~~C~~C~k~I 169 (431)
..|..|+.++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 5677777665
No 214
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=23.67 E-value=24 Score=37.57 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=11.4
Q ss_pred hhHHHHhhhHhHh
Q 014080 404 GSILAHEMMHAWL 416 (431)
Q Consensus 404 g~ilaHE~~Ha~l 416 (431)
-.++|||++|.|.
T Consensus 296 ~~viaHElAHqWf 308 (632)
T 2xq0_A 296 IDVIAHELAHSWS 308 (632)
T ss_dssp THHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHh
Confidence 3799999999995
No 215
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=23.47 E-value=28 Score=30.24 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=10.2
Q ss_pred hhhHHHHhhhHh
Q 014080 403 TGSILAHEMMHA 414 (431)
Q Consensus 403 ~g~ilaHE~~Ha 414 (431)
.-.|++||++|+
T Consensus 108 ~~~~~~HE~GH~ 119 (159)
T 1y93_A 108 LFLTAVHEIGHS 119 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh
Confidence 347899999998
No 216
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=23.40 E-value=25 Score=37.40 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=12.0
Q ss_pred hhhHHHHhhhHhHh
Q 014080 403 TGSILAHEMMHAWL 416 (431)
Q Consensus 403 ~g~ilaHE~~Ha~l 416 (431)
.-+++|||+.|.|-
T Consensus 267 ~~~liaHE~~H~W~ 280 (597)
T 4fgm_A 267 FLSLCCHEYFHSWN 280 (597)
T ss_dssp HHHHHHHHHHHTTB
T ss_pred hhhhHhhhhheeec
Confidence 45799999999994
No 217
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=23.36 E-value=30 Score=27.59 Aligned_cols=44 Identities=2% Similarity=-0.164 Sum_probs=33.4
Q ss_pred CccCCCCCccCCCCceEEccCC-cccCcchhhcccCCCCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDG-RKLCLECLDSAIMDTHECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG-~~yC~~C~~~~v~~~~~C~~C~~~I 305 (431)
|.|..|..++ .++.+ +..| ..||+.|...-+.....|--|..++
T Consensus 23 ~~CpI~~~~m--~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l 67 (98)
T 1wgm_A 23 FLDPIMSTLM--CDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPL 67 (98)
T ss_dssp TBCTTTCSBC--SSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBC
T ss_pred cCCcCccccc--cCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCC
Confidence 8999999977 45654 5788 9999999887665556777777544
No 218
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.80 E-value=37 Score=24.16 Aligned_cols=25 Identities=16% Similarity=0.565 Sum_probs=15.2
Q ss_pred Ccccccccccccc--CcccccCCCccc
Q 014080 206 NRPYHKHCYKEQH--HPKCDVCQNFIP 230 (431)
Q Consensus 206 g~pyC~~CY~~~f--~pkC~~C~~~I~ 230 (431)
|..||..|..+.+ ...|..|...|.
T Consensus 41 gH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 41 GHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp SCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4556666665432 356888877765
No 219
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=22.58 E-value=43 Score=34.93 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.2
Q ss_pred hhhhhhHHHHhhhHhH
Q 014080 400 RLLTGSILAHEMMHAW 415 (431)
Q Consensus 400 rl~~g~ilaHE~~Ha~ 415 (431)
.+++..++||||+|-+
T Consensus 131 ~~~~A~t~AHELGHnL 146 (510)
T 3g5c_A 131 TDLMAVTLAQSLAHNI 146 (510)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHc
Confidence 4678889999999943
No 220
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=22.53 E-value=14 Score=31.58 Aligned_cols=44 Identities=16% Similarity=0.392 Sum_probs=31.3
Q ss_pred cccCCCCCCCCCcceeecCCccccccccccccC---cccccCCCcccc
Q 014080 187 FRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHH---PKCDVCQNFIPT 231 (431)
Q Consensus 187 F~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~---pkC~~C~~~I~~ 231 (431)
|.|..|...+... ....=|..||..|..+.+. ..|..|...|..
T Consensus 32 ~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 32 YLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 6788887777653 4446778899999876543 579899887643
No 221
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*
Probab=22.39 E-value=49 Score=29.21 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=17.9
Q ss_pred EEEEEecCCC-------hhhhhhHHHHhhhHhH
Q 014080 390 TAILILYGLP-------RLLTGSILAHEMMHAW 415 (431)
Q Consensus 390 ~~il~l~glp-------rl~~g~ilaHE~~Ha~ 415 (431)
.||+-++-|. ......++|||++|.+
T Consensus 94 ~aVvS~~Rl~~~~~~~~~~r~~k~~~HElGH~l 126 (163)
T 4axq_A 94 RAVLSVFRLTTADSELYRERVVKEAVHEIGHVL 126 (163)
T ss_dssp EEEEECGGGCCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecccCCccHHHHHHHHHHHHHHHHHHHc
Confidence 3566665543 4456778999999973
No 222
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=22.23 E-value=18 Score=31.29 Aligned_cols=45 Identities=18% Similarity=0.405 Sum_probs=32.6
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhcccCC-CCCCCcccHHH
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDSAIMD-THECQPLYLEI 305 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~~v~~-~~~C~~C~~~I 305 (431)
+.|..|...+. .......=|..||..|....+.. ...|--|..+|
T Consensus 55 ~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 57888888763 34444467899999999776554 56788888665
No 223
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=22.04 E-value=37 Score=35.20 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=16.0
Q ss_pred CCChhhhhhHHHHhhhHh
Q 014080 397 GLPRLLTGSILAHEMMHA 414 (431)
Q Consensus 397 glprl~~g~ilaHE~~Ha 414 (431)
||.+.=--+|||||++|.
T Consensus 323 ~l~~~El~aVlaHElgH~ 340 (482)
T 4aw6_A 323 GCKNEEVLAVLGHELGHW 340 (482)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 688888889999999995
No 224
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=22.03 E-value=30 Score=32.36 Aligned_cols=11 Identities=36% Similarity=0.640 Sum_probs=9.5
Q ss_pred hHHHHhhhHhH
Q 014080 405 SILAHEMMHAW 415 (431)
Q Consensus 405 ~ilaHE~~Ha~ 415 (431)
.++.||+|||-
T Consensus 122 g~i~HEl~HaL 132 (235)
T 3lq0_A 122 GTILHALMHAI 132 (235)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHh
Confidence 68899999983
No 225
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=21.67 E-value=22 Score=29.17 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=14.9
Q ss_pred cccccCcccccCCCccccCC
Q 014080 214 YKEQHHPKCDVCQNFIPTNS 233 (431)
Q Consensus 214 Y~~~f~pkC~~C~~~I~~~~ 233 (431)
|.+....+|..|+..|.-..
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDS 39 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTC
T ss_pred EeCCCCCcchhhCCccCCCC
Confidence 44555668999999998754
No 226
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=21.56 E-value=17 Score=28.04 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=6.6
Q ss_pred CccCCCCCcc
Q 014080 259 PRCCSCERME 268 (431)
Q Consensus 259 F~C~~C~r~l 268 (431)
|.|..|++.+
T Consensus 74 ~~C~~C~~~f 83 (106)
T 2ee8_A 74 FKCQECGKGF 83 (106)
T ss_dssp TSCSSSCCCC
T ss_pred eECCCcCCcc
Confidence 5677777655
No 227
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=21.23 E-value=2.2e+02 Score=23.18 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCCcCCCCCcccccCceEeec----CccccCCCcccCCCCCCCCCcceeecCCccccccccccccCcccccCCCcc
Q 014080 158 GYRICAGCNTEIGHGRYLSCM----EAFWHPECFRCHSCNLPITDVEFSMSGNRPYHKHCYKEQHHPKCDVCQNFI 229 (431)
Q Consensus 158 ~~~~C~~C~k~I~~g~~v~al----gk~wHp~CF~C~~C~~~L~~~~F~~~dg~pyC~~CY~~~f~pkC~~C~~~I 229 (431)
....|..|+. .|+.|... .+.||..|.. |.. ...|.-||..| .|..|++..
T Consensus 14 ~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c-------~C~~C~k~~ 68 (107)
T 4gne_A 14 HEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH-------QCDECSSAA 68 (107)
T ss_dssp SCSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG-------BCTTTCSBC
T ss_pred CCCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC-------CCCcCCCCC
Confidence 4456888873 35666554 2567877653 322 12566777777 477777754
No 228
>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*
Probab=21.16 E-value=33 Score=30.27 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=9.4
Q ss_pred hHHHHhhhHh
Q 014080 405 SILAHEMMHA 414 (431)
Q Consensus 405 ~ilaHE~~Ha 414 (431)
.|++||++|+
T Consensus 117 ~~~~HE~gH~ 126 (174)
T 2y6d_A 117 YAATHELGHS 126 (174)
T ss_dssp HHHHHHHHHH
T ss_pred ehhhHHhHhh
Confidence 7999999998
No 229
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=21.15 E-value=43 Score=25.47 Aligned_cols=41 Identities=17% Similarity=0.433 Sum_probs=24.4
Q ss_pred ccCCCCCCCCCcceeecCCcc-ccccccccccCcccccCCCcccc
Q 014080 188 RCHSCNLPITDVEFSMSGNRP-YHKHCYKEQHHPKCDVCQNFIPT 231 (431)
Q Consensus 188 ~C~~C~~~L~~~~F~~~dg~p-yC~~CY~~~f~pkC~~C~~~I~~ 231 (431)
.|..|........+. .=|.. +|..|.... ..|..|..+|..
T Consensus 20 ~C~IC~~~~~~~v~~-pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 61 (79)
T 2yho_A 20 LCMVCCEEEINSTFC-PCGHTVCCESCAAQL--QSCPVCRSRVEH 61 (79)
T ss_dssp BCTTTSSSBCCEEEE-TTCBCCBCHHHHTTC--SBCTTTCCBCCE
T ss_pred EeEEeCcccCcEEEE-CCCCHHHHHHHHHhc--CcCCCCCchhhC
Confidence 344554444433333 23344 777776654 389999999986
No 230
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.90 E-value=1.1e+02 Score=23.51 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=25.0
Q ss_pred ccccCCCccccCCcceEEEecccccccccCCCcccCCCCccCCCCCccCCCCceEEccCC-cccCcchh
Q 014080 221 KCDVCQNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPRDTKYLSLDDG-RKLCLECL 288 (431)
Q Consensus 221 kC~~C~~~I~~~~~~~i~~~~~pfw~~~yCp~h~H~~CF~C~~C~r~l~~g~~f~~l~dG-~~yC~~C~ 288 (431)
.|.+|++.-.+.. +..=. .|+.-||..|.. -+|. . +..| ..+|..|.
T Consensus 28 ~C~vC~~~~~~~~---ll~CD-------~C~~~yH~~Cl~-----Ppl~----~--~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 28 SCRVCGGKHEPNM---QLLCD-------ECNVAYHIYCLN-----PPLD----K--VPEEEYWYCPSCK 75 (77)
T ss_dssp SCSSSCCCCCSTT---EEECS-------SSCCEEETTSSS-----SCCS----S--CCCSSCCCCTTTC
T ss_pred CCcCcCCcCCCCC---EEEcC-------CCCccccccccC-----CCcc----C--CCCCCCcCCcCcc
Confidence 4777887543322 22222 367777765542 1121 1 2356 78898884
No 231
>3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A
Probab=20.85 E-value=33 Score=35.72 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=11.3
Q ss_pred hHHHHhhhHhHhhhc
Q 014080 405 SILAHEMMHAWLRLK 419 (431)
Q Consensus 405 ~ilaHE~~Ha~lrl~ 419 (431)
..|+|||+||+--+-
T Consensus 352 ~TL~HE~GHa~H~~l 366 (564)
T 3ahn_A 352 DVLTHEAGHAFQVYE 366 (564)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHhCHHHHHHH
Confidence 459999999865443
No 232
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=20.38 E-value=25 Score=29.25 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=14.4
Q ss_pred CCCCCcCCCCCcccccCc
Q 014080 156 FSGYRICAGCNTEIGHGR 173 (431)
Q Consensus 156 ~~~~~~C~~C~k~I~~g~ 173 (431)
+.+...|.+|++.|.-|.
T Consensus 16 kS~Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 16 KSNRSTCKGCMEKIEKGQ 33 (111)
T ss_dssp SSSCCBCTTTCCBCCTTC
T ss_pred ecCCccccccCCCccCCc
Confidence 456789999999997663
No 233
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=20.25 E-value=26 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=21.6
Q ss_pred CccCCCCCccCCCCceEEccCCcccCcchhhc
Q 014080 259 PRCCSCERMEPRDTKYLSLDDGRKLCLECLDS 290 (431)
Q Consensus 259 F~C~~C~r~l~~g~~f~~l~dG~~yC~~C~~~ 290 (431)
..|..|+-..... + ..+.+|+.+|..|+..
T Consensus 173 ~~C~~CGE~~~~~-~-~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEA-D-AKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGG-G-CEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhc-c-eeeeCCcEEChhhhcc
Confidence 4699999876433 2 2235899999999864
No 234
>3dka_A DINB-like protein; DINB/YFIT-like putative metalloenzyme fold, structural genom joint center for structural genomics, JCSG; 2.30A {Bacillus subtilis}
Probab=20.09 E-value=62 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.6
Q ss_pred hhhhHHHHhhhH-----hHhhhcCCCC
Q 014080 402 LTGSILAHEMMH-----AWLRLKGFIC 423 (431)
Q Consensus 402 ~~g~ilaHE~~H-----a~lrl~g~~~ 423 (431)
+...++.|+..| +|+|+.|++-
T Consensus 121 ~l~~~~~H~~hH~GQi~~~lr~~g~~~ 147 (155)
T 3dka_A 121 LLQLAMEHEIHHKGNLFVYVREMGHTE 147 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhHHHHhHHHHHHHHHHcCCCC
Confidence 345778999977 8999999863
No 235
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=20.02 E-value=29 Score=38.53 Aligned_cols=14 Identities=36% Similarity=0.814 Sum_probs=11.8
Q ss_pred hhhHHHHhhhHhHh
Q 014080 403 TGSILAHEMMHAWL 416 (431)
Q Consensus 403 ~g~ilaHE~~Ha~l 416 (431)
...++|||++|.|.
T Consensus 302 ~~~viaHElAHqWF 315 (897)
T 2xdt_A 302 ITMTVAHELAHQWF 315 (897)
T ss_dssp HHHHHHHHHHTTTB
T ss_pred HHHHHHHHHHHHHc
Confidence 34789999999995
Done!