BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014081
(431 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Mus musculus GN=Adat3 PE=2 SV=1
Length = 349
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Query: 335 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 394
E + PY+CTGYD+Y+ EPCVMCAMALVH RI+R+FY P+P+ GALG++ R+ LN
Sbjct: 270 EDSLPYVCTGYDLYVTREPCVMCAMALVHARIQRVFYGAPSPD-GALGTLFRVHARPDLN 328
Query: 395 HHYAVFRVLL 404
H + VFR +L
Sbjct: 329 HRFQVFRGIL 338
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 3 KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKL----ANTIIRRLNQVAPLENLRHVKRIQ 58
+WQ + P + Q V + + P L + ++R ++ V PL H+KR++
Sbjct: 25 QWQAL-----PVLSEQQSGAVELILAYAAPVLDKRQTSRLLREVSAVYPLPAQPHLKRVR 79
Query: 59 KKFLEGGKTQLSMILCLADENDNRMNSLPQDVQEL-----VNSYQL-SPFITKVCKNAAL 112
GG ++LCLA + P+ + EL V+ L +PF+ V L
Sbjct: 80 PSRSAGGAQSSDLLLCLAGPSAG-----PRSLAELLPRPAVDPRGLGTPFLVPVPARPPL 134
Query: 113 SKEEWEEQCKLWPTSYHPPTYNIDGIPG--FNEDDSQSIFSFMKSAVELAQSGDGSIVNA 170
++ ++EE WPTS+H + G F+ + ++ + M+ AV AQ + A
Sbjct: 135 TRSQFEEARAHWPTSFHEDKQVTSALAGQLFSTQERAAMQTHMERAVCAAQRAAAQGLRA 194
Query: 171 --AVIVDPSIKQEIASACDQICCCSIST 196
AV+VDP+ + +A+ D C S+++
Sbjct: 195 VGAVVVDPASDRVLATGHD---CSSVAS 219
>sp|Q561R2|ADAT3_RAT Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Rattus norvegicus GN=Adat3 PE=2 SV=1
Length = 349
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 335 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 394
E + PY+CTGYD+Y+ EPCVMCAMALVH RI+R+FY P+P+ GALG+ R+ LN
Sbjct: 270 EDSLPYVCTGYDLYVTREPCVMCAMALVHARIQRVFYGAPSPD-GALGTRFRVHARPDLN 328
Query: 395 HHYAVFRVLL 404
H + VFR +L
Sbjct: 329 HRFQVFRGIL 338
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 26/216 (12%)
Query: 3 KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKL----ANTIIRRLNQVAPLENLRHVKRIQ 58
+WQ + P + Q V + + P L + ++R ++ V PL H+KR++
Sbjct: 25 QWQAL-----PVLSEQQSGAVELVLAYAAPVLDKRQTSRLLREVSAVYPLPAQPHLKRVR 79
Query: 59 KKFLEGGKTQLSMILCLADENDNRMNSLPQDVQEL-----VNSYQL-SPFITKVCKNAAL 112
GG ++LCLA + P+ + EL V+ L +PF+ V L
Sbjct: 80 PSRSAGGAHSSDLLLCLAGPSAG-----PRSLAELLPRPAVDPRGLGTPFLVPVPARPPL 134
Query: 113 SKEEWEEQCKLWPTSYHPPTYNIDGIPG--FNEDDSQSIFSFMKSAVELAQSGDGSIVNA 170
++ ++EE WPTS+H + G F+ ++ + M+ AV AQ + A
Sbjct: 135 TRSQFEEARAHWPTSFHEDKQVTSALAGQLFSAQARAAMQTHMERAVRAAQRAAAQGLRA 194
Query: 171 --AVIVDPSIKQEIASACDQICCCSISTEKNSLESC 204
AV+VDP+ +A+ D CC S +++ C
Sbjct: 195 VGAVVVDPASDHVLATGHD--CCSEASPLLHAVMVC 228
>sp|Q96EY9|ADAT3_HUMAN Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Homo sapiens GN=ADAT3 PE=1 SV=1
Length = 351
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 254 NSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAKRQK 313
H SC +PL HA + + L+ G G G + +P + A
Sbjct: 210 TGHDCSCADNPLLHAVMVCVD-------LVARGQG------RGTYDFRPFPACSFAPAAA 256
Query: 314 TDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAF 373
+LD G PYLCTGYD+Y+ EPC MCAMALVH RI R+FY
Sbjct: 257 PQAVRAGAVRKLDADEDGL------PYLCTGYDLYVTREPCAMCAMALVHARILRVFYGA 310
Query: 374 PNPNEGALGSVHRLQGEKSLNHHYAVFRVLL 404
P+P+ GALG+ R+ LNH + VFR +L
Sbjct: 311 PSPD-GALGTRFRIHARPDLNHRFQVFRGVL 340
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 27 ASMVEPKLANTIIRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSL 86
A +++ + + +++ ++ + PL H+KR++ G L M+LCLA S
Sbjct: 48 APVLDKRQTSRLLKEVSALHPLPAQPHLKRVRPSRDAGSPHALEMLLCLAGP-----ASG 102
Query: 87 PQDVQEL-----VNSYQLS-PFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIPG 140
P+ + EL V+ L PF+ V L++ ++EE WPTS+H + G
Sbjct: 103 PRSLAELLPRPAVDPRGLGQPFLVPVPARPPLTRGQFEEARAHWPTSFHEDKQVTSALAG 162
Query: 141 --FNEDDSQSIFSFMKSAVELAQSGDGSIVN--AAVIVDPSIKQEIASACDQICCCSIST 196
F+ + ++ S M+ AV A+ + AV+VDP+ + +A+ D C C+ +
Sbjct: 163 RLFSTQERAAMQSHMERAVWAARRAAARGLRAVGAVVVDPASDRVLATGHD--CSCADNP 220
Query: 197 EKNSLESCSEQPEVLSSDLFSNGESNHT 224
+++ C DL + G+ T
Sbjct: 221 LLHAVMVC--------VDLVARGQGRGT 240
>sp|Q8JFW4|ADAT3_DANRE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Danio rerio GN=adat3 PE=2 SV=2
Length = 336
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 335 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLN 394
E+ PY+CTGYD+Y+ EPCVMCAMALVH RI R+FY + +GA GS +++ +K LN
Sbjct: 258 ETGLPYICTGYDLYVTREPCVMCAMALVHSRISRVFYG-ASTADGAFGSRYKIHCQKDLN 316
Query: 395 HHYAVFRVLL 404
H + VF+ ++
Sbjct: 317 HRFEVFKGVM 326
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 2 DKWQIIHI-PNKPAIPPNQQPTVNVFASMVEPKLANTIIRRLNQVAPLENLRHVKRIQKK 60
D W+++ + ++ + P P A ++E + + +++ L+ + PL NL+H+KR++
Sbjct: 16 DTWEVLPVLSDEQSQDPELLPAYA--APILERRETSRLVKELSLIHPLPNLQHIKRVRPC 73
Query: 61 FLEGGKTQLSMILCLADE---NDNRMNSLPQDVQ-ELVNSYQLS-PFITKVCKNAALSKE 115
+ L +I+CL + D + +L + + NS L PFI ++ N L++
Sbjct: 74 KHKDSPHPLEVIVCLVSDVQCTDPKKVTLSHLLHTQCFNSNGLGDPFIVQIPANPPLTRP 133
Query: 116 EWEEQCKLWPTSYHPPTYNIDGIPG--FNEDDSQSIFSFMKSAVELAQSGD--GSIVNAA 171
++E+ K WPTS+H + G F + +M AV+ A+SG G A
Sbjct: 134 QFEKASKHWPTSFHEDKLVTFALKGQLFTAHQKTKMREYMCVAVKAAKSGRELGMDAVGA 193
Query: 172 VIVDPSIKQEIASACD 187
VIVDP +Q IA A D
Sbjct: 194 VIVDPKTEQIIAVAHD 209
>sp|Q9URQ3|TAD3_YEAST tRNA-specific adenosine deaminase subunit TAD3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD3 PE=1
SV=1
Length = 322
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 335 ESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGAL----GSVHRLQGE 390
E A YLC YD+YL EPC MC+MAL+H R+RR+ + G+L G + +
Sbjct: 235 EDANSYLCLDYDVYLTHEPCSMCSMALIHSRVRRVVFLTEMQRTGSLKLTSGDGYCMNDN 294
Query: 391 KSLNHHYAVFR 401
K LN Y F+
Sbjct: 295 KQLNSTYEAFQ 305
>sp|Q9P7N4|TAD3_SCHPO tRNA-specific adenosine deaminase subunit tad3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad3 PE=3 SV=1
Length = 315
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 399
YLC + + EPCVMC+M L+H RIRR+ Y P G + S++ + LNH Y
Sbjct: 239 YLCKDLTVVMTHEPCVMCSMGLLHSRIRRLIYCKKQPLTGGIESLYGIHWRAELNHRYLA 298
Query: 400 F 400
+
Sbjct: 299 Y 299
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
Query: 22 TVNVFASMVEPKLANTIIRRLNQV--APLENLRHVKRIQKKFLEGGKTQLSMILCLADEN 79
T NV+ + EPK A+ + + + Q+ E+L H R+++ E G +L +I+C E
Sbjct: 37 TENVWIACFEPKYASKVTQYVKQIRSKQKESLLHCNRLRRIQDENGSLELQIIIC--PEK 94
Query: 80 DNRMNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIP 139
N + +D ++L ++ F+ V L+ E++ E +WP SY D
Sbjct: 95 SMTANEIGKDFEDLGIVSKMI-FLYAVPAFPPLTDEQFHEWNSVWPVSYRKHVQRQD--- 150
Query: 140 GFNEDDSQSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQ 188
F + + I S ++ + A + G I AA I DP+ +A + D+
Sbjct: 151 VFTVHELKRIESILEDLINAAGASHKHGEIGCAAAIYDPTTDTVLAVSVDE 201
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 343 TGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNH 395
+ YDIY+ EPC MCA A+ H R++R+FY + GA+ S R K+ H
Sbjct: 67 SDYDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVESNLRYFNSKACFH 119
>sp|Q4UJW9|Y1319_RICFE Uncharacterized deaminase RF_1319 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_1319 PE=3 SV=2
Length = 144
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 345 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 383
YDIY+ EPC MCA A+ H R++R+FY + GA+ S
Sbjct: 69 YDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVES 107
>sp|Q68Y02|Y819_RICTY Uncharacterized deaminase RT0819 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=RT0819 PE=3 SV=1
Length = 148
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 345 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 383
YDIY+ EPC MCA A+ H R++R+FY + +GA+ S
Sbjct: 69 YDIYVTLEPCAMCASAISHSRLKRLFYGASDSKQGAVES 107
>sp|Q92G39|Y1285_RICCN Uncharacterized deaminase RC1285 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC1285 PE=3 SV=2
Length = 153
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 345 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 383
YDIY+ EPC MCA A+ H R++R+FY + G + S
Sbjct: 69 YDIYVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGVVES 107
>sp|Q9ZCC6|Y831_RICPR Uncharacterized deaminase RP831 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP831 PE=3 SV=1
Length = 148
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 345 YDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 383
YDIY+ EPC MCA A+ H R++R+FY + GA+ S
Sbjct: 69 YDIYVTLEPCAMCASAISHSRLKRLFYGASDSKHGAVES 107
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+Y+ EPC MCA A++H RI+R+ + + GA+GS + +NH V +L +
Sbjct: 84 LYVTLEPCTMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFFDDYKMNHTLEVTSGVLAE 143
Query: 407 E 407
E
Sbjct: 144 E 144
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 399
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 400 FRVLLPKEI---------LNKNEVVAARTSTTNTN 425
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 399
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 400 FRVLLPKEI---------LNKNEVVAARTSTTNTN 425
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 399
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 400 FRVLLPKEI---------LNKNEVVAARTSTTNTN 425
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAV 399
Y +Y+ EPCVMCA A++H RI R+ + + GA GS+ + +NH +
Sbjct: 73 YRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEI 132
Query: 400 FRVLLPKEI---------LNKNEVVAARTSTTNTN 425
+L E + + E+ A + + ++T+
Sbjct: 133 TEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+Y+ EPCVMCA A+VH RI R+ + + GA GS+ + +NH + +L
Sbjct: 80 LYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRD 139
Query: 407 E 407
E
Sbjct: 140 E 140
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+Y+ EPCVMCA A+VH RI R+ + + GA GS+ + +NH + +L
Sbjct: 80 LYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRD 139
Query: 407 E 407
E
Sbjct: 140 E 140
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 344 GYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNH 395
G ++Y+ EPC+MC+ ALV RI ++ ++ + G + SV + E +LNH
Sbjct: 72 GCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNH 123
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 344 GYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVL 403
G +Y+ EPC MCA A+V R+ ++ + +P G G++ L E+ NH V +
Sbjct: 73 GATLYVTLEPCPMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGV 132
Query: 404 LPKE 407
L +E
Sbjct: 133 LEEE 136
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+++ EPCVMC+ A+ RI + Y N G + S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAA 139
Query: 407 EILN 410
+ N
Sbjct: 140 DCAN 143
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad2 PE=3 SV=2
Length = 389
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+Y+ EPC+MCA AL I+ +++ N G GSV + ++S++ Y V+ L
Sbjct: 289 LYVTVEPCLMCAAALKQLHIKAVYFGCGNDRFGGCGSVFSINKDQSIDPSYPVYPGLFYS 348
Query: 407 E 407
E
Sbjct: 349 E 349
>sp|C1D1Q9|TILS_DEIDV tRNA(Ile)-lysidine synthase OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=tilS PE=3 SV=1
Length = 533
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387
YL TG + + EPC MC A + R+ RI Y NP GALG V L
Sbjct: 446 YL-TGCTLVVTLEPCPMCLGAALEARVERIVYGASNPKAGALGGVSDL 492
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 407 EILN 410
+ N
Sbjct: 140 DCAN 143
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 407 EILN 410
+ N
Sbjct: 140 DCAN 143
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 407 EILN 410
+ N
Sbjct: 140 DCAN 143
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPK 406
+++ EPCVMC+ A+ RI + Y N G S++++ ++ LNH V R LL
Sbjct: 80 LFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQILTDERLNHRVQVERGLLAA 139
Query: 407 EILN 410
+ N
Sbjct: 140 DCAN 143
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=tilS PE=3 SV=2
Length = 582
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 339 PYL--CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387
PYL CT + + EPC MC A + RI I Y NP GALG V L
Sbjct: 470 PYLSDCT---LVVTLEPCPMCLGAALEARIGHIVYGAANPKAGALGGVSDL 517
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 38.5 bits (88), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 338 RPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387
R + +Y+ EPC MCA A++ R+ + + PN GA GS RL
Sbjct: 1173 RSWRLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWIRL 1222
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2
SV=2
Length = 214
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 341 LCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384
+C +Y+ EPC+MCA AL RI + Y N G GSV
Sbjct: 93 VCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSV 136
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2
SV=1
Length = 191
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384
+Y+ EPC+MCA AL RI + Y N G GSV
Sbjct: 100 LYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSV 137
>sp|B7K1U3|BIOB_CYAP8 Biotin synthase OS=Cyanothece sp. (strain PCC 8801) GN=bioB PE=3
SV=1
Length = 368
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 351 WEPCVMCAMALVHQRIRRIFYAFPNPNEGA-LGSVHRLQGEKSLNHHYAVFRVLLPKEIL 409
WE V A+AL + + NP EG LG HRL ++L A+FR++LP++IL
Sbjct: 245 WEDRVDLALALRELGVESVPINLLNPREGTPLGDCHRLDPFEALKA-IAIFRLILPQQIL 303
Query: 410 N 410
Sbjct: 304 R 304
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2
SV=1
Length = 175
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGE 390
+Y+ EPC+MCA AL +I + Y N G GSV + G+
Sbjct: 88 LYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVSGD 131
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2
PE=2 SV=1
Length = 170
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGE 390
+Y+ EPC+MCA AL +I + Y N G GSV + G+
Sbjct: 83 LYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNVAGD 126
>sp|A8FJ14|DEOC_BACP2 Deoxyribose-phosphate aldolase OS=Bacillus pumilus (strain
SAFR-032) GN=deoC PE=3 SV=1
Length = 223
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 28 SMVEPKLANTIIRRLNQVA-PL-ENLRHVKRIQ-KKFLEGGKTQLSMILCLADENDNRMN 84
S+ +LA T + + PL N VK + K +E G T++ M++ +A D +
Sbjct: 44 SLAAKELAGTGVDVCTVIGFPLGANTTAVKAFETKDAIENGATEVDMVINIAALKDGEYD 103
Query: 85 SLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKL 123
++ QD++ +V++ + + + + L+ EE + C+L
Sbjct: 104 AVEQDIRAVVDAAKGKALVKVIIEACLLTDEEKVKACEL 142
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2
SV=1
Length = 191
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384
+Y+ EPC+MCA AL +I + Y N G GSV
Sbjct: 100 LYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 137
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1
SV=1
Length = 191
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384
+Y+ EPC+MCA AL +I + Y N G GSV
Sbjct: 100 LYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 137
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYA 372
+Y+ EPC+MC A++H RI R+ +
Sbjct: 77 LYVTLEPCIMCYGAIIHSRISRLVFG 102
>sp|Q892U4|DEOC_CLOTE Deoxyribose-phosphate aldolase OS=Clostridium tetani (strain
Massachusetts / E88) GN=deoC PE=3 SV=1
Length = 216
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 26 FASMVEPKLANTIIRRLNQVA-PL-ENLRHVKRIQ-KKFLEGGKTQLSMILCLADENDNR 82
+ S+V +L T ++ + PL N + VK + K+ +E G ++ M++ + D +
Sbjct: 42 YTSLVSKELQGTDVKTCVVIGFPLGANTKEVKAFETKQAIENGAKEVDMVINIGALKDKK 101
Query: 83 MNSLPQDVQELVNSYQLSPFITKVCKNAALSKEEWEEQCKL 123
+ + +D++ +VN + + + + L+ EE + C++
Sbjct: 102 YDVVKEDIEAVVNEAKGKALVKVIIETCLLTDEEKVKACEI 142
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1
SV=1
Length = 250
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 347 IYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384
+Y+ EPC+MCA AL I ++ + N G G+V
Sbjct: 81 LYVTVEPCIMCASALKQLDIGKVVFGCGNERFGGNGTV 118
>sp|Q9ZCC4|ZNUC_RICPR Zinc import ATP-binding protein ZnuC OS=Rickettsia prowazekii
(strain Madrid E) GN=znuC PE=3 SV=1
Length = 233
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 3 KWQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIIRRLNQVAPLENLRHVKRIQKKFL 62
K +I ++P K + + TV F ++ P N + + +++ +L H+K+ + L
Sbjct: 67 KLKIGYVPQKFGLTTDIPITVKKFLDLLAPSHFN---KNIKEISSFIDLEHIKKQEISKL 123
Query: 63 EGGKTQLSMILCLADEN------DNRMNSLPQDVQELVNSYQLSPFITK 105
GG+ Q ++ C N D + SL DV YQL FI K
Sbjct: 124 SGGQFQKVVLACSIINNPDLIILDEPLQSL--DVTSQQEFYQLIHFIRK 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,844,470
Number of Sequences: 539616
Number of extensions: 6962773
Number of successful extensions: 17904
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 17847
Number of HSP's gapped (non-prelim): 58
length of query: 431
length of database: 191,569,459
effective HSP length: 120
effective length of query: 311
effective length of database: 126,815,539
effective search space: 39439632629
effective search space used: 39439632629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)