Query 014081
Match_columns 431
No_of_seqs 264 out of 1562
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 01:40:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2771 Subunit of tRNA-specif 100.0 5.9E-49 1.3E-53 388.7 15.1 291 20-409 32-338 (344)
2 COG0590 CumB Cytosine/adenosin 100.0 2.6E-31 5.6E-36 241.4 16.2 145 146-417 5-151 (152)
3 PRK10860 tRNA-specific adenosi 100.0 5.5E-30 1.2E-34 237.0 17.0 144 149-420 13-158 (172)
4 cd01285 nucleoside_deaminase N 99.9 1.9E-23 4E-28 179.3 12.2 105 153-384 1-107 (109)
5 PRK10786 ribD bifunctional dia 99.9 7.9E-21 1.7E-25 194.7 16.0 82 343-428 64-151 (367)
6 TIGR00326 eubact_ribD riboflav 99.9 5E-21 1.1E-25 194.4 14.0 82 343-428 58-145 (344)
7 PLN02807 diaminohydroxyphospho 99.8 1.5E-20 3.2E-25 193.4 15.8 83 342-428 92-180 (380)
8 KOG1018 Cytosine deaminase FCY 99.8 1.3E-20 2.9E-25 173.8 12.6 154 145-425 7-168 (169)
9 cd01284 Riboflavin_deaminase-r 99.8 7.2E-20 1.6E-24 159.3 11.1 50 341-390 58-113 (115)
10 PF00383 dCMP_cyt_deam_1: Cyti 99.8 3E-19 6.5E-24 149.9 11.2 98 148-373 3-102 (102)
11 PHA02588 cd deoxycytidylate de 99.8 7.8E-19 1.7E-23 162.2 14.4 67 341-414 98-164 (168)
12 TIGR02571 ComEB ComE operon pr 99.8 7.5E-18 1.6E-22 153.2 13.0 130 150-401 7-137 (151)
13 cd01286 deoxycytidylate_deamin 99.8 1E-17 2.2E-22 148.7 13.5 38 341-378 85-122 (131)
14 cd00786 cytidine_deaminase-lik 99.7 1.1E-17 2.3E-22 140.7 10.6 32 342-373 64-95 (96)
15 COG0117 RibD Pyrimidine deamin 99.7 3.2E-17 6.9E-22 146.6 13.7 75 341-419 65-145 (146)
16 COG2131 ComEB Deoxycytidylate 99.2 6.3E-11 1.4E-15 108.7 11.6 49 343-391 96-144 (164)
17 cd01283 cytidine_deaminase Cyt 98.9 1.4E-08 3.1E-13 87.3 10.2 35 343-377 64-103 (112)
18 KOG3127 Deoxycytidylate deamin 98.4 3.6E-06 7.8E-11 80.5 11.1 35 342-376 150-184 (230)
19 PRK14719 bifunctional RNAse/5- 98.4 8E-07 1.7E-11 91.6 7.3 71 342-418 43-116 (360)
20 PF14439 Bd3614-deam: Bd3614-l 98.1 3.3E-05 7.2E-10 67.4 10.2 42 337-378 70-118 (136)
21 TIGR01354 cyt_deam_tetra cytid 95.9 0.11 2.3E-06 46.1 11.0 18 262-279 45-62 (127)
22 KOG2771 Subunit of tRNA-specif 60.1 0.42 9.1E-06 49.0 -6.0 94 4-97 1-94 (344)
23 TIGR02214 spoVD_pbp stage V sp 35.8 56 0.0012 36.4 5.1 18 169-186 241-258 (636)
24 PRK15105 peptidoglycan synthas 35.0 59 0.0013 35.9 5.2 18 169-186 259-276 (578)
25 PF14424 Toxin-deaminase: The 34.5 29 0.00062 31.2 2.2 22 344-365 98-119 (133)
26 COG0768 FtsI Cell division pro 33.7 66 0.0014 35.6 5.3 20 169-188 268-287 (599)
27 TIGR02074 PBP_1a_fam penicilli 30.7 80 0.0017 34.5 5.2 19 168-186 256-274 (530)
28 PF00905 Transpeptidase: Penic 27.7 50 0.0011 32.7 2.8 19 169-187 1-19 (304)
29 PRK10795 penicillin-binding pr 20.9 95 0.0021 34.7 3.7 18 169-186 272-289 (634)
30 PRK00611 putative disulfide ox 20.1 51 0.0011 29.8 1.1 10 350-359 32-41 (135)
No 1
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=100.00 E-value=5.9e-49 Score=388.73 Aligned_cols=291 Identities=32% Similarity=0.530 Sum_probs=220.7
Q ss_pred CCceeEEEEEcCcchH----HHHHHHhhccCCCCCCcccccccccccCCCcceeEEEEeeccccccccCCchhHHHHHhh
Q 014081 20 QPTVNVFASMVEPKLA----NTIIRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVN 95 (431)
Q Consensus 20 ~~lv~V~a~~I~~K~a----s~lik~L~~~~Pl~~L~HLKRvrk~~~~~g~~~L~viLc~~~~~~~~~~~l~~~l~~lv~ 95 (431)
.+++.+|.+.+.|+.. +.+++.++.. +++.|+||||+|.....++.+.+.++||+.+..... ..|.++.+
T Consensus 32 ~~ti~~~~~~~~ple~kk~i~~v~~~~~~~-~~~~l~hlkRv~~~~~d~~~~~~e~v~c~~~~~s~~-----~~l~~l~~ 105 (344)
T KOG2771|consen 32 CETIPVWSARAAPLEDKKVIGRVIKELSRE-LPESLRHLKRVRPYRKDGSSLILEDVLCLKSPESAE-----LILGDLED 105 (344)
T ss_pred CCcchhheeeecchHHHHHHHHHHHHhccC-ChHHHHHHHHhhhhcccCCcchhhhhhccCccchhh-----HHHHhhhh
Confidence 4677777777765544 5555555542 346899999999654445677888999997653321 22333332
Q ss_pred hccC------CceeeeccccCCCCHHHHHHhcCcCcccccCCCCCCCCC--CCCChhhHHHHHHHHHHHHHHHHhCCCCc
Q 014081 96 SYQL------SPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGI--PGFNEDDSQSIFSFMKSAVELAQSGDGSI 167 (431)
Q Consensus 96 ~~~l------~~~i~~VP~~~P~treqw~~~sk~WP~~f~p~~~~~~~~--~~f~~~~~~~~~~~m~~Aie~a~~g~g~~ 167 (431)
.-.. .++.++||+++|+||+||++|.+|||++||||++...-. +.|..++.+.+.++|+.+|++|..|.-+.
T Consensus 106 ~~~v~~~~~~~v~~~~Vp~~~p~tr~qfees~~~wpv~~h~n~~~~~l~~G~~fs~~e~~~~~ri~e~~I~~a~~~~~~~ 185 (344)
T KOG2771|consen 106 SGAVSPRLVGLVRSVEVPEFAPLTREQFEESKEYWPVSFHPNHEDEQLADGSFFSDEERGEIARIGELLIAMATDGHASR 185 (344)
T ss_pred ccccchhhcccceeeeccccCCCCHHHHHhhheeeecccCCCchHHHHhccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 2211 237788999999999999999999999999999754222 24899999999999999999999987778
Q ss_pred ceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCCCCCCCcccccccCCcccCCc
Q 014081 168 VNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNP 247 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 247 (431)
+++|+||||....|||.+.|+++
T Consensus 186 ~~~a~I~~p~~~~Via~~~~~~~--------------------------------------------------------- 208 (344)
T KOG2771|consen 186 PVSAAIVDPVMDRVIAAGTGEVC--------------------------------------------------------- 208 (344)
T ss_pred CccceecCCccceEEecCCCccc---------------------------------------------------------
Confidence 88999999999999999988653
Q ss_pred ccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCC----CCcccccccccccccCcc
Q 014081 248 WQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSI----GTPAKRQKTDLANVENSE 323 (431)
Q Consensus 248 ~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~----~~~~kr~k~~~~~~~~~~ 323 (431)
..+|..|++|++|+.||+|+... .|... ..++.+ .+|.++|+.. .+
T Consensus 209 -------------~~~P~eh~~mv~v~~v~rrq~~~---------~~~~~--~~~~~~f~~~~~~~~~~~~~------v~ 258 (344)
T KOG2771|consen 209 -------------AYNPIEHCVMVLVHFVARRQEEG---------TWDLH--PIPLLIFNAVSSPFYKQTVA------VQ 258 (344)
T ss_pred -------------ccCcHHHHHHHHHHHHHHHHhcc---------ccccc--cccccccccccchhhhhhch------hc
Confidence 12699999999999999998732 11110 011111 2233334321 11
Q ss_pred cCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeec
Q 014081 324 ELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVL 403 (431)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gv 403 (431)
.+ +.....++|+|+|+++|+|+|||.||+|||+|+||+||||+..+..+|++|+.+.++..+.|||+|+||+|+
T Consensus 259 ~~------D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry~vfr~~ 332 (344)
T KOG2771|consen 259 LL------DVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRYEVFRGY 332 (344)
T ss_pred cc------cccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcceEEEEee
Confidence 11 122234789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHH
Q 014081 404 LPKEIL 409 (431)
Q Consensus 404 l~eEa~ 409 (431)
+++++.
T Consensus 333 ~e~d~~ 338 (344)
T KOG2771|consen 333 LEEDPI 338 (344)
T ss_pred cccccc
Confidence 998765
No 2
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-31 Score=241.36 Aligned_cols=145 Identities=30% Similarity=0.432 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCC
Q 014081 146 SQSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNH 223 (431)
Q Consensus 146 ~~~~~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~ 223 (431)
....+.||+.|++.|+.+ .|.++.|||||| ..+.||+.+++...
T Consensus 5 ~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~-~~~~ii~~~~N~~~--------------------------------- 50 (152)
T COG0590 5 SEKDEDFMREALKEAKKAGDEGEVPVGAVIVD-ADGEIIARGHNRRE--------------------------------- 50 (152)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEc-CCCCEEEEecCccc---------------------------------
Confidence 346678899999888853 577888999999 67899999987543
Q ss_pred CCCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC
Q 014081 224 TSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPT 303 (431)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~ 303 (431)
...+|+.||+|.||+.++++.+
T Consensus 51 ------------------------------------~~~dptaHAEi~air~a~~~~~---------------------- 72 (152)
T COG0590 51 ------------------------------------EDNDPTAHAEILAIRAAAETLG---------------------- 72 (152)
T ss_pred ------------------------------------cCCCccccHHHHHHHHHHHhhC----------------------
Confidence 2347999999999999988653
Q ss_pred CCCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCccc
Q 014081 304 SIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGS 383 (431)
Q Consensus 304 ~~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~ 383 (431)
.|.|.|||||+|+|||+||++||+||||+|||||+++++.|+.|+
T Consensus 73 -----------------------------------~~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~ 117 (152)
T COG0590 73 -----------------------------------NYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGS 117 (152)
T ss_pred -----------------------------------CCCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCc
Confidence 389999999999999999999999999999999999999999999
Q ss_pred chhhcccccCCCCcEEEeeccHHHHHHHHHHHHH
Q 014081 384 VHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAA 417 (431)
Q Consensus 384 ~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~ 417 (431)
..+++....+||+++|.+|++++||..+++.|..
T Consensus 118 ~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 118 LLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred ccccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 9999998899999999999999999999888764
No 3
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=5.5e-30 Score=237.00 Aligned_cols=144 Identities=25% Similarity=0.359 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCC
Q 014081 149 IFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSL 226 (431)
Q Consensus 149 ~~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~ 226 (431)
...||+.|+++|+.+ .|..+.|||||+ .++||+.|++.+.
T Consensus 13 ~~~~m~~A~~~A~~a~~~g~~pvGAVIV~--~g~IIa~g~N~~~------------------------------------ 54 (172)
T PRK10860 13 HEYWMRHALTLAKRAWDEREVPVGAVLVH--NNRVIGEGWNRPI------------------------------------ 54 (172)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEe--CCEEEEEeeCCCC------------------------------------
Confidence 456899999999975 576788899996 5999999987542
Q ss_pred CCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 227 PPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIG 306 (431)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~ 306 (431)
...+|+.||+|.||+.++++..
T Consensus 55 ---------------------------------~~~d~~~HAEi~Ai~~a~~~~~------------------------- 76 (172)
T PRK10860 55 ---------------------------------GRHDPTAHAEIMALRQGGLVLQ------------------------- 76 (172)
T ss_pred ---------------------------------CCCCCccCHHHHHHHHHHHhcC-------------------------
Confidence 1236899999999998765321
Q ss_pred CcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchh
Q 014081 307 TPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHR 386 (431)
Q Consensus 307 ~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~ 386 (431)
.+.+.|||||+|+|||+||++||+|+||+|||||.++++.++.|+.++
T Consensus 77 --------------------------------~~~l~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~ 124 (172)
T PRK10860 77 --------------------------------NYRLLDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMD 124 (172)
T ss_pred --------------------------------CCCcCCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHH
Confidence 366889999999999999999999999999999999999999998888
Q ss_pred hcccccCCCCcEEEeeccHHHHHHHHHHHHHHHh
Q 014081 387 LQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTS 420 (431)
Q Consensus 387 l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~ 420 (431)
++...+++|+++|++|++++||.+|+..|.....
T Consensus 125 ~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~ 158 (172)
T PRK10860 125 VLHHPGMNHRVEITEGVLADECAALLSDFFRMRR 158 (172)
T ss_pred HhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHh
Confidence 8888888999999999999999999999887633
No 4
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.90 E-value=1.9e-23 Score=179.30 Aligned_cols=105 Identities=38% Similarity=0.621 Sum_probs=88.0
Q ss_pred HHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCCCCC
Q 014081 153 MKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPND 230 (431)
Q Consensus 153 m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~ 230 (431)
|+.|+++|+.+ .|..+.||||||+. ++||+.+.+...
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~-~~ii~~g~n~~~---------------------------------------- 39 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDD-GKVIARGHNRVE---------------------------------------- 39 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCC-CEEEEEEeCCCC----------------------------------------
Confidence 57788888854 56677899999976 899999987542
Q ss_pred CCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 014081 231 FPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAK 310 (431)
Q Consensus 231 ~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~k 310 (431)
...+|+.||+|.||+++.++.+
T Consensus 40 -----------------------------~~~~~~~HAE~~ai~~~~~~~~----------------------------- 61 (109)
T cd01285 40 -----------------------------QDGDPTAHAEIVAIRNAARRLG----------------------------- 61 (109)
T ss_pred -----------------------------CCCCCcccHHHHHHHHHHHHhC-----------------------------
Confidence 1247899999999999876532
Q ss_pred ccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccc
Q 014081 311 RQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384 (431)
Q Consensus 311 r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~ 384 (431)
.|.++|++||+|+|||+||++||+|+||+||||+.+++..|+.++.
T Consensus 62 ----------------------------~~~~~~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~~~~~ 107 (109)
T cd01285 62 ----------------------------SYLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFL 107 (109)
T ss_pred ----------------------------CCccCCeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCcccccccC
Confidence 3789999999999999999999999999999999999998877653
No 5
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.85 E-value=7.9e-21 Score=194.75 Aligned_cols=82 Identities=23% Similarity=0.252 Sum_probs=74.7
Q ss_pred cCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHHHH
Q 014081 343 TGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVA 416 (431)
Q Consensus 343 ~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~ 416 (431)
.|||||||+||| +||+.||+++||+|||||..+++.+..|+...++. .++++|+.|++++||.+++..|.
T Consensus 64 ~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~----~~gi~v~~~~~~~e~~~l~~~f~ 139 (367)
T PRK10786 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEALNKGFL 139 (367)
T ss_pred CCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHh----cCCcEEEcCCcHHHHHHHHHHHH
Confidence 689999999999 89999999999999999999999888777666665 35899999999999999999999
Q ss_pred HHHhhCCCCCcc
Q 014081 417 ARTSTTNTNATT 428 (431)
Q Consensus 417 ~r~~~~~~~~~~ 428 (431)
.+.+++.|++|-
T Consensus 140 ~~~~~~rP~V~~ 151 (367)
T PRK10786 140 KRMRTGFPYIQL 151 (367)
T ss_pred HHhhcccceEEE
Confidence 999999999874
No 6
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.85 E-value=5e-21 Score=194.35 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=74.5
Q ss_pred cCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHHHH
Q 014081 343 TGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVA 416 (431)
Q Consensus 343 ~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~ 416 (431)
+|||||+|+||| +||++||+++||+|||||..+++.+..|....++.. .+++|..|++++||.+++..|.
T Consensus 58 ~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~----~gi~v~~~~~~~e~~~l~~~f~ 133 (344)
T TIGR00326 58 KGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQ----AGIEVTFGILKEEAERLNKGFL 133 (344)
T ss_pred CCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHhc----CCcEEEeCCCHHHHHHHHHHHH
Confidence 799999999999 899999999999999999999988887766677664 3799999999999999999999
Q ss_pred HHHhhCCCCCcc
Q 014081 417 ARTSTTNTNATT 428 (431)
Q Consensus 417 ~r~~~~~~~~~~ 428 (431)
.+..++.|+++.
T Consensus 134 ~~~~~~rP~v~~ 145 (344)
T TIGR00326 134 KRMRTGLPYVQL 145 (344)
T ss_pred HhhhcCCCEEEE
Confidence 999999999874
No 7
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.85 E-value=1.5e-20 Score=193.43 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=75.3
Q ss_pred ccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014081 342 CTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 415 (431)
Q Consensus 342 ~~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~ 415 (431)
+.|+|||+|+||| +||++||+++||+|||||..+++.+..|.+..++.. ++++|..|++++||.+++..|
T Consensus 92 ~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~----~gi~V~~g~~~~e~~~l~~~f 167 (380)
T PLN02807 92 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRD----AGIEVTVGVEEELCRKLNEAF 167 (380)
T ss_pred cCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHh----CCCEEEeCcCHHHHHHHHHHH
Confidence 3689999999999 899999999999999999999998877777777754 479999999999999999999
Q ss_pred HHHHhhCCCCCcc
Q 014081 416 AARTSTTNTNATT 428 (431)
Q Consensus 416 ~~r~~~~~~~~~~ 428 (431)
+.|..++.|++|-
T Consensus 168 ~~~~~~~rP~V~l 180 (380)
T PLN02807 168 IHRMLTGKPFVTL 180 (380)
T ss_pred HHHHhhccccEEE
Confidence 9999999999874
No 8
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.84 E-value=1.3e-20 Score=173.77 Aligned_cols=154 Identities=25% Similarity=0.302 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHhC--CC-CcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCC
Q 014081 145 DSQSIFSFMKSAVELAQSG--DG-SIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGES 221 (431)
Q Consensus 145 ~~~~~~~~m~~Aie~a~~g--~g-~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~ 221 (431)
......++|+.|+++|+.+ .| +++.|||+||- +++|+|+|++.+.
T Consensus 7 ~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~-~g~v~a~g~n~~~------------------------------- 54 (169)
T KOG1018|consen 7 LSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHM-DGKVLASGGNMVN------------------------------- 54 (169)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCCceEEEEEeC-CCeEEecccceec-------------------------------
Confidence 3456678999999999875 46 67778999987 8999999986432
Q ss_pred CCCCCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHH---HHhhcccCCCCCCCCCCCCCCC
Q 014081 222 NHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSS---AARDRLLFPGMGHEGDKPNGVH 298 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~v---A~r~r~~~p~~~~~~~~~~~~~ 298 (431)
...+|++||+|.||++- ....
T Consensus 55 --------------------------------------~~~d~t~HaE~~~I~~~~~~~~~~------------------ 78 (169)
T KOG1018|consen 55 --------------------------------------EKKDPTAHAEVIAIREEEVMCKSL------------------ 78 (169)
T ss_pred --------------------------------------ccCCcchhhHHHHHhhHHHHhhhc------------------
Confidence 23479999999999972 2211
Q ss_pred CCCCCCCCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCC
Q 014081 299 TIQPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNE 378 (431)
Q Consensus 299 ~~~~~~~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~ 378 (431)
+.+.+++++||+|+|||+||++||.++||++||||+.++..
T Consensus 79 ---------------------------------------~~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~ 119 (169)
T KOG1018|consen 79 ---------------------------------------RTIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERF 119 (169)
T ss_pred ---------------------------------------CceeccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccc
Confidence 23899999999999999999999999999999999999999
Q ss_pred CCcccchhhccc--ccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCCCC
Q 014081 379 GALGSVHRLQGE--KSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNTN 425 (431)
Q Consensus 379 g~~g~~~~l~~~--~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~~~~~~ 425 (431)
+..|+..+.... +.+.+.+.+..++...++..+...|.-+...+++.
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~n~~~~~ 168 (169)
T KOG1018|consen 120 GGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRDNPKDPG 168 (169)
T ss_pred cccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhccccccCCCC
Confidence 988875544322 24566788888999999989999998887776653
No 9
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.82 E-value=7.2e-20 Score=159.30 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=43.7
Q ss_pred cccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCCcccchhhccc
Q 014081 341 LCTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGE 390 (431)
Q Consensus 341 ~~~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~ 390 (431)
.+.|||||+|+||| +||++||+|+||+||||+..+++.+..+++++++.+
T Consensus 58 ~l~g~tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~ 113 (115)
T cd01284 58 LARGATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRA 113 (115)
T ss_pred CCCCeEEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHH
Confidence 35789999999999 899999999999999999999988777766666643
No 10
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.80 E-value=3e-19 Score=149.90 Aligned_cols=98 Identities=37% Similarity=0.495 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCC
Q 014081 148 SIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTS 225 (431)
Q Consensus 148 ~~~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~ 225 (431)
....||+.|+++|+.. .+....||||||| .+.+|+.|.+...
T Consensus 3 ~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~-~~~~i~~g~n~~~----------------------------------- 46 (102)
T PF00383_consen 3 WDEEFMRIAIELAKRSRPCGNFPVGAVIVDP-DGKIIATGYNGEP----------------------------------- 46 (102)
T ss_dssp HHHHHHHHHHHHHHTHBTTTSSSEEEEEEET-TTEEEEEEESBHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEEEec-cCccEEEEeeeee-----------------------------------
Confidence 4567899999999864 5667778999998 6889999987542
Q ss_pred CCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 014081 226 LPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSI 305 (431)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~ 305 (431)
...+|+.||+|.||..+++. .
T Consensus 47 ----------------------------------~~~~~~~HAE~~Ai~~~~~~-~------------------------ 67 (102)
T PF00383_consen 47 ----------------------------------PGKNPTIHAEMNAIRKAARN-G------------------------ 67 (102)
T ss_dssp ----------------------------------STTGGTB-HHHHHHHHHHHT-T------------------------
T ss_pred ----------------------------------eeccccccchhhhhhhhhhh-c------------------------
Confidence 12358999999999999874 1
Q ss_pred CCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEec
Q 014081 306 GTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAF 373 (431)
Q Consensus 306 ~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~ 373 (431)
...++|++||+|+|||+||+++|+|+||+||||++
T Consensus 68 ---------------------------------~~~~~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 68 ---------------------------------GSSLKGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp ---------------------------------SSGETTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred ---------------------------------cccccCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 12348999999999999999999999999999984
No 11
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.80 E-value=7.8e-19 Score=162.19 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=51.4
Q ss_pred cccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHH
Q 014081 341 LCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEV 414 (431)
Q Consensus 341 ~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~ 414 (431)
.+.|++||||+|||+||++||+++||+||||+...+... +.+..++.. .+++|.. +..+++.++|..
T Consensus 98 ~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~--~~~~~~L~~----~Gi~v~~-~~~~~~~~~~~~ 164 (168)
T PHA02588 98 SIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNG--PGWDDILRK----SGIEVIQ-IPKEELNKLNWE 164 (168)
T ss_pred CCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCc--HHHHHHHHH----CCCEEEE-eCHHHHHhhhhh
Confidence 467999999999999999999999999999998754332 223456653 4778775 677777777653
No 12
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.76 E-value=7.5e-18 Score=153.18 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhC-CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCCC
Q 014081 150 FSFMKSAVELAQSG-DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPP 228 (431)
Q Consensus 150 ~~~m~~Aie~a~~g-~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~ 228 (431)
..||+.|+++|+.+ +.+.+.||||| ..++||+.|.+....-.. +|..
T Consensus 7 ~~fM~~A~~~A~rs~~~~~~VGAVIV--~d~~IIs~GyN~~~~g~~--------~~~~---------------------- 54 (151)
T TIGR02571 7 QYFMAQSHLLALRSTCTRLSVGATIV--RDKRIIAGGYNGSVAGGV--------HCID---------------------- 54 (151)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEE--ECCEEEEEEECCCCCCCC--------cccc----------------------
Confidence 35899999999965 55666789999 469999999987542100 0100
Q ss_pred CCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 014081 229 NDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTP 308 (431)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~~ 308 (431)
.++. .......+..||+|.||..+++. .
T Consensus 55 -------------------~~~~-----~~~~~~~~~~HAE~nAI~~a~~~-~--------------------------- 82 (151)
T TIGR02571 55 -------------------EGCY-----VVDGHCVRTIHAEMNALLQCAKF-G--------------------------- 82 (151)
T ss_pred -------------------cccc-----ccccccCCccCHHHHHHHHHHhc-C---------------------------
Confidence 0000 00012358899999999987631 1
Q ss_pred ccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhhc
Q 014081 309 AKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQ 388 (431)
Q Consensus 309 ~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~ 388 (431)
..+.|++||+|+|||+||+++|+++||+||||+...+... ...+++
T Consensus 83 -------------------------------~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~---~~~~~l 128 (151)
T TIGR02571 83 -------------------------------VSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP---YAIELF 128 (151)
T ss_pred -------------------------------CCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH---HHHHHH
Confidence 1357999999999999999999999999999997654432 234566
Q ss_pred ccccCCCCcEEEe
Q 014081 389 GEKSLNHHYAVFR 401 (431)
Q Consensus 389 ~~~~ln~~~~V~~ 401 (431)
.+. +++|..
T Consensus 129 ~~~----gi~v~~ 137 (151)
T TIGR02571 129 EQA----GVELKK 137 (151)
T ss_pred HHC----CCEEEE
Confidence 544 555554
No 13
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.76 E-value=1e-17 Score=148.74 Aligned_cols=38 Identities=26% Similarity=0.660 Sum_probs=34.7
Q ss_pred cccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCC
Q 014081 341 LCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNE 378 (431)
Q Consensus 341 ~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~ 378 (431)
.+.|++||+|+|||+||+.+|+++||+||||+.+.+..
T Consensus 85 ~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 85 SLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred CcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 35789999999999999999999999999999987654
No 14
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.74 E-value=1.1e-17 Score=140.65 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=30.7
Q ss_pred ccCcEEEEeCCChHHHHHHHHHhCCCeEEEec
Q 014081 342 CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAF 373 (431)
Q Consensus 342 ~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~ 373 (431)
+++++||+|+|||.||+++|+|+||++|||+.
T Consensus 64 ~~~~tly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 64 TKGQMLYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred CCceEEEEECCChHHHHHHHHHhCCCCEEEee
Confidence 68999999999999999999999999999985
No 15
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.74 E-value=3.2e-17 Score=146.57 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=66.6
Q ss_pred cccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHH
Q 014081 341 LCTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEV 414 (431)
Q Consensus 341 ~~~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~ 414 (431)
...|+|+|+|+||| |.|+.+|+.+||+|||++..||+....|.+...+. .++++|.-|+|++|+..+++.
T Consensus 65 ~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~----~aGi~V~~gil~~e~~~l~~~ 140 (146)
T COG0117 65 AARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLR----AAGIEVEVGILEEEAEKLNEG 140 (146)
T ss_pred ccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHH----HcCCeEEEehhHHHHHHHHHH
Confidence 35789999999999 79999999999999999999999877777766665 358999999999999999999
Q ss_pred HHHHH
Q 014081 415 VAART 419 (431)
Q Consensus 415 ~~~r~ 419 (431)
|..|.
T Consensus 141 f~~~~ 145 (146)
T COG0117 141 FLKRM 145 (146)
T ss_pred HHccc
Confidence 98764
No 16
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.24 E-value=6.3e-11 Score=108.67 Aligned_cols=49 Identities=29% Similarity=0.540 Sum_probs=39.4
Q ss_pred cCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccc
Q 014081 343 TGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEK 391 (431)
Q Consensus 343 ~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~ 391 (431)
.|++||+|+.||.+|+..|+.+||++|||+.+.++....-....++...
T Consensus 96 ~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~a 144 (164)
T COG2131 96 EGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEA 144 (164)
T ss_pred CCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhC
Confidence 7899999999999999999999999999999988764222234455443
No 17
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=98.88 E-value=1.4e-08 Score=87.28 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=32.3
Q ss_pred cCcEEEEe-----CCChHHHHHHHHHhCCCeEEEeccCCC
Q 014081 343 TGYDIYLV-----WEPCVMCAMALVHQRIRRIFYAFPNPN 377 (431)
Q Consensus 343 ~g~tlY~T-----~EPC~MCa~Al~~srI~rVvyg~~~~~ 377 (431)
.++++|+| +|||.||+.+|.+.++++|+|...+++
T Consensus 64 ~~~~i~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 64 YLVTWAVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred eEEEEEEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 46899999 999999999999999999999998765
No 18
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=98.35 E-value=3.6e-06 Score=80.49 Aligned_cols=35 Identities=23% Similarity=0.606 Sum_probs=32.3
Q ss_pred ccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCC
Q 014081 342 CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNP 376 (431)
Q Consensus 342 ~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~ 376 (431)
+.+|+||+|+-||--|+..|+.+||+.|+|+....
T Consensus 150 ~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~ 184 (230)
T KOG3127|consen 150 VGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYY 184 (230)
T ss_pred cCCceEEEeecchHHHHHHHHHhhhhheeeccccc
Confidence 45699999999999999999999999999998774
No 19
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.35 E-value=8e-07 Score=91.59 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=58.1
Q ss_pred ccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcc---cchhhcccccCCCCcEEEeeccHHHHHHHHHHHHHH
Q 014081 342 CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALG---SVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAAR 418 (431)
Q Consensus 342 ~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g---~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r 418 (431)
..|.++|+|.|||.-|+.+|+.+||+|||+++ |++..+.| ....++. ..+++| .+++++||..++..|.++
T Consensus 43 i~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~----~aGi~V-~~~l~~e~~~l~~~~~~~ 116 (360)
T PRK14719 43 INANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQ----SRGIKV-NNLIRKEIIKYSRGDLKD 116 (360)
T ss_pred CCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHH----HCCCEE-EeehHHHHHHHhHHhhhc
Confidence 57889999999999999999999999999999 66653322 2256665 358999 679999999999987665
No 20
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.08 E-value=3.3e-05 Score=67.39 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=34.9
Q ss_pred CCCccccCcEEEEeCCChHHHHHHHHHhCC-------CeEEEeccCCCC
Q 014081 337 ARPYLCTGYDIYLVWEPCVMCAMALVHQRI-------RRIFYAFPNPNE 378 (431)
Q Consensus 337 ~~~~~~~g~tlY~T~EPC~MCa~Al~~srI-------~rVvyg~~~~~~ 378 (431)
.+.-+-.|++||+|+.||-||++.+.+... .+|||+..++..
T Consensus 70 ~~~~l~~ga~l~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~ 118 (136)
T PF14439_consen 70 ERRPLPPGARLLVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDPGS 118 (136)
T ss_pred hcCcCCCCcEEEEechhHHHHHHHHHHHhhCcCCccceEEEEecCCCCc
Confidence 345567899999999999999999999776 789999876533
No 21
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=95.92 E-value=0.11 Score=46.14 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=15.0
Q ss_pred CCCccchHHHHHHHHHHh
Q 014081 262 WHPLRHAAIAAIQSSAAR 279 (431)
Q Consensus 262 ~~Pl~HA~M~AI~~vA~r 279 (431)
.+|..||++.||..+...
T Consensus 45 ~~~s~~AE~~Ai~~a~~~ 62 (127)
T TIGR01354 45 YPLTICAERSAIGKAISA 62 (127)
T ss_pred CCCCcCHHHHHHHHHHHc
Confidence 468899999999988753
No 22
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=60.12 E-value=0.42 Score=49.03 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=73.6
Q ss_pred cceeecCCCCCCCCCCCCceeEEEEEcCcchHHHHHHHhhccCCCCCCcccccccccccCCCcceeEEEEeecccccccc
Q 014081 4 WQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIIRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRM 83 (431)
Q Consensus 4 ~~i~~ip~~~~~~~~~~~lv~V~a~~I~~K~as~lik~L~~~~Pl~~L~HLKRvrk~~~~~g~~~L~viLc~~~~~~~~~ 83 (431)
|+|.+.|.++..+|+..+.+++|.+.+..+.+.++-..+-.+.|+++.+|++||+|.....++..|+.|.+......+..
T Consensus 1 ~~v~~pp~k~~~sp~~~~~~k~~~~~ls~~~~~ti~~~~~~~~ple~kk~i~~v~~~~~~~~~~~l~hlkRv~~~~~d~~ 80 (344)
T KOG2771|consen 1 TSVEEPPEKERKSPELEPRIKVIRSLLSTRFCETIPVWSARAAPLEDKKVIGRVIKELSRELPESLRHLKRVRPYRKDGS 80 (344)
T ss_pred CCccCCccccccCCCcCccchhcccccccccCCcchhheeeecchHHHHHHHHHHHHhccCChHHHHHHHHhhhhcccCC
Confidence 78899999999998877899999999999999999999999999999999999999755346677778888776555544
Q ss_pred CCchhHHHHHhhhc
Q 014081 84 NSLPQDVQELVNSY 97 (431)
Q Consensus 84 ~~l~~~l~~lv~~~ 97 (431)
.....+++-+..++
T Consensus 81 ~~~~e~v~c~~~~~ 94 (344)
T KOG2771|consen 81 SLILEDVLCLKSPE 94 (344)
T ss_pred cchhhhhhccCccc
Confidence 44444444433333
No 23
>TIGR02214 spoVD_pbp stage V sporulation protein D. This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD.
Probab=35.76 E-value=56 Score=36.42 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCeeeeeec
Q 014081 169 NAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 169 ~~AViVDP~~~~iia~a~ 186 (431)
+++|++||.+|+|+|-+.
T Consensus 241 ga~Vvmd~~TG~ILAmas 258 (636)
T TIGR02214 241 VSIIVMNPKNGEILGMSN 258 (636)
T ss_pred EEEEEEECCCCeEEEEcc
Confidence 579999999999999875
No 24
>PRK15105 peptidoglycan synthase FtsI; Provisional
Probab=34.96 E-value=59 Score=35.92 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCeeeeeec
Q 014081 169 NAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 169 ~~AViVDP~~~~iia~a~ 186 (431)
+++|++||.+|+|+|-+.
T Consensus 259 ga~Vvmdp~TG~ILAmas 276 (578)
T PRK15105 259 GSAVLVDVNTGEVLAMAN 276 (578)
T ss_pred EEEEEEECCCCcEEEEec
Confidence 578999999999999876
No 25
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=34.54 E-value=29 Score=31.21 Aligned_cols=22 Identities=18% Similarity=0.530 Sum_probs=18.8
Q ss_pred CcEEEEeCCChHHHHHHHHHhC
Q 014081 344 GYDIYLVWEPCVMCAMALVHQR 365 (431)
Q Consensus 344 g~tlY~T~EPC~MCa~Al~~sr 365 (431)
..+||+-+.||..|...|-+.+
T Consensus 98 ~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 98 TIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred eEEEEecCCcChhHHHHHHHHH
Confidence 3699999999999999887654
No 26
>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
Probab=33.72 E-value=66 Score=35.64 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=17.3
Q ss_pred eEEEEEcCCCCeeeeeecCc
Q 014081 169 NAAVIVDPSIKQEIASACDQ 188 (431)
Q Consensus 169 ~~AViVDP~~~~iia~a~d~ 188 (431)
+++|++||.+|+|+|-+...
T Consensus 268 g~~vv~dpktGeILAmas~P 287 (599)
T COG0768 268 GAAVVLDPKTGEILAMASSP 287 (599)
T ss_pred eEEEEEeCCCCcEEEEecCC
Confidence 57899999999999988743
No 27
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.
Probab=30.70 E-value=80 Score=34.51 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCeeeeeec
Q 014081 168 VNAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~ 186 (431)
-+++|++||.+|+|+|-+.
T Consensus 256 ~~a~Vv~d~~TG~IlAmvg 274 (530)
T TIGR02074 256 QAALVAIDPDTGAVRALVG 274 (530)
T ss_pred ceeEEEEECCCCeEEEEEe
Confidence 4578999999999999765
No 28
>PF00905 Transpeptidase: Penicillin binding protein transpeptidase domain; InterPro: IPR001460 This signature identifies a large group of proteins, which include: Beta-lactamase precursor (3.5.2.6 from EC, penicillinase) Peptidoglycan synthetase ftsI (2.4.1.129 from EC, peptidoglycan glycosyltransferase 3) Methicillin resistance mecR1 protein Methicillin resistance blaR1 protein The large number of penicillin binding proteins, which are represented in this group of sequences, are responsible for the final stages of peptidoglycan biosynthesis for cell wall formation. The proteins synthesise cross-linked peptidoglycan from lipid intermediates, and contain a penicillin-sensitive transpeptidase carboxy-terminal domain. The active site serine (residue 337 in P14677 from SWISSPROT) is conserved in all members of this family []. MecR1 and BlaR1 are metallopeptidases belonging to MEROPS peptidase family M56, clan M-. BlaR1 and MecR1 cleave their cognate transcriptional repressors BlaI and MecI, respectively, activating the synthesis of MecA. MecR1 is present in Staphylococcus aureus and Staphylococcus sciuri, whereas BlaR1 (also known as BlaR, PenR1, or PenJ) has been found in Bacillus licheniformis, Staphylococcus epidermidis, Staphylococcus haemolyticus, and several S. aureus strains. These proteins are either plasmid-encoded, chromosomal, or transposon-mediated. MecR1/BlaR1 proteins are made up by homologous N-terminal 330-residue transmembrane metallopeptidase domains linked to extracellular 260-residue homologous PBP-like penicillin sensor moieties. ; GO: 0008658 penicillin binding, 0009273 peptidoglycan-based cell wall biogenesis; PDB: 3FWL_A 3VMA_A 2Z2M_E 2Z2L_E 1QME_A 1RP5_B 2ZC4_E 2ZC3_E 1QMF_A 3HBR_A ....
Probab=27.66 E-value=50 Score=32.67 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCeeeeeecC
Q 014081 169 NAAVIVDPSIKQEIASACD 187 (431)
Q Consensus 169 ~~AViVDP~~~~iia~a~d 187 (431)
+++|++||.+|+|+|-+..
T Consensus 1 GavVv~d~~TG~IlA~~~~ 19 (304)
T PF00905_consen 1 GAVVVMDPKTGEILAMVGG 19 (304)
T ss_dssp EEEEEEETTTTBEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEeC
Confidence 4789999999999998764
No 29
>PRK10795 penicillin-binding protein 2; Provisional
Probab=20.94 E-value=95 Score=34.69 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCeeeeeec
Q 014081 169 NAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 169 ~~AViVDP~~~~iia~a~ 186 (431)
+++|++||.+|+|+|-+.
T Consensus 272 ga~Vvmdp~TGeILAmas 289 (634)
T PRK10795 272 AAVVVTDPRTGGILALVS 289 (634)
T ss_pred eEEEEEECCCCcEEEEEe
Confidence 579999999999999875
No 30
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=20.12 E-value=51 Score=29.79 Aligned_cols=10 Identities=50% Similarity=1.105 Sum_probs=8.2
Q ss_pred eCCChHHHHH
Q 014081 350 VWEPCVMCAM 359 (431)
Q Consensus 350 T~EPC~MCa~ 359 (431)
-.|||+||..
T Consensus 32 gl~PC~LCiy 41 (135)
T PRK00611 32 NVEPCVLCYY 41 (135)
T ss_pred CCCCchHHHH
Confidence 3899999964
Done!