Query 014081
Match_columns 431
No_of_seqs 264 out of 1562
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx8_A TRNA-specific adenosine 100.0 2.2E-31 7.5E-36 246.4 15.5 148 147-422 14-163 (179)
2 1z3a_A TRNA-specific adenosine 100.0 1.5E-30 5.2E-35 238.5 16.7 147 150-424 10-158 (168)
3 2b3j_A TRNA adenosine deaminas 100.0 2.7E-30 9.3E-35 234.7 16.7 147 149-423 7-155 (159)
4 2a8n_A Cytidine and deoxycytid 100.0 4.5E-30 1.6E-34 229.4 14.0 138 150-415 5-144 (144)
5 3dh1_A TRNA-specific adenosine 100.0 2.8E-30 9.6E-35 240.9 11.1 157 147-425 24-184 (189)
6 1wwr_A TRNA adenosine deaminas 100.0 3.1E-29 1E-33 230.5 15.9 143 150-421 24-168 (171)
7 1wkq_A Guanine deaminase; doma 100.0 5.8E-29 2E-33 227.3 7.4 142 149-419 11-159 (164)
8 2g84_A Cytidine and deoxycytid 100.0 3.1E-28 1.1E-32 228.4 12.3 147 150-419 29-183 (197)
9 1p6o_A Cytosine deaminase; hyd 99.9 3.4E-26 1.2E-30 208.3 10.7 135 149-418 14-150 (161)
10 2hxv_A Diaminohydroxyphosphori 99.9 2.6E-23 9E-28 210.8 14.9 144 145-427 10-163 (360)
11 2b3z_A Riboflavin biosynthesis 99.9 1.2E-22 4.1E-27 206.9 13.7 82 342-427 74-161 (373)
12 2g6v_A Riboflavin biosynthesis 99.9 4.9E-22 1.7E-26 204.3 11.8 82 342-427 90-177 (402)
13 1vq2_A DCMP deaminase, deoxycy 99.8 1.5E-20 5E-25 175.4 10.0 65 340-411 118-182 (193)
14 2hvw_A Deoxycytidylate deamina 99.8 2.5E-20 8.6E-25 173.1 10.7 136 149-406 42-178 (184)
15 2w4l_A DCMP deaminse, deoxycyt 99.8 1.8E-20 6.1E-25 173.2 3.3 73 340-418 93-166 (178)
16 3g8q_A Predicted RNA-binding p 99.6 3.1E-15 1.1E-19 142.3 10.2 35 342-376 55-89 (278)
17 2nyt_A Probable C->U-editing e 99.5 2.1E-13 7.1E-18 127.2 10.8 77 343-427 83-170 (190)
18 1uwz_A Cytidine deaminase; CDD 98.5 1.5E-06 5E-11 76.7 12.0 37 150-188 4-43 (136)
19 2fr5_A Cytidine deaminase; tet 98.0 7.1E-05 2.4E-09 66.8 12.5 31 341-371 81-116 (146)
20 2z3g_A Blasticidin-S deaminase 97.8 0.00031 1.1E-08 61.3 12.7 36 150-187 8-45 (130)
21 3b8f_A Putative blasticidin S 96.4 0.023 7.9E-07 50.1 10.4 36 150-188 5-42 (142)
22 1r5t_A Cytidine deaminase; zin 94.7 0.32 1.1E-05 42.8 11.4 37 149-187 11-50 (142)
23 3r2n_A Cytidine deaminase; str 93.2 0.7 2.4E-05 40.5 10.6 22 351-372 90-111 (138)
24 2d30_A Cytidine deaminase; pur 91.6 1.8 6.2E-05 37.9 11.3 15 351-365 92-106 (141)
25 1ctt_A Cytidine deaminase; hyd 83.7 9.5 0.00032 37.3 11.8 25 342-366 257-285 (294)
26 3mpz_A Cytidine deaminase; ssg 79.4 14 0.00048 32.7 10.2 15 351-365 105-119 (150)
27 3v4k_A DNA DC->DU-editing enzy 75.7 3.8 0.00013 38.2 5.6 31 344-374 101-136 (203)
28 1ctt_A Cytidine deaminase; hyd 63.6 15 0.0005 36.0 7.1 20 346-365 121-140 (294)
29 3vow_A Probable DNA DC->DU-edi 61.9 6.2 0.00021 36.4 3.9 33 344-376 87-124 (190)
30 3un7_A PBPA, penicillin-bindin 40.9 27 0.00092 35.7 5.1 19 168-186 130-148 (462)
31 3ue3_A Septum formation, penic 38.3 31 0.0011 36.3 5.2 19 168-186 232-250 (554)
32 3equ_A PBP-2, penicillin-bindi 38.3 31 0.0011 36.1 5.2 20 168-187 223-242 (542)
33 3pbt_A Penicillin-binding prot 35.7 37 0.0012 35.6 5.2 19 168-186 205-223 (538)
34 1qme_A Penicillin-binding prot 29.9 41 0.0014 36.1 4.5 19 168-186 240-258 (702)
35 2v2f_F Penicillin binding prot 22.9 86 0.0029 31.0 5.0 19 168-186 65-83 (390)
36 2y2m_A PBP1B, penicillin-bindi 20.6 76 0.0026 32.8 4.2 21 167-187 123-143 (494)
No 1
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.97 E-value=2.2e-31 Score=246.45 Aligned_cols=148 Identities=23% Similarity=0.314 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCC
Q 014081 147 QSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHT 224 (431)
Q Consensus 147 ~~~~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~ 224 (431)
.....||+.|+++|+.+ .|.+++|||||+ +|+||+.|.+.+.
T Consensus 14 ~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~--~g~Ii~~G~N~~~---------------------------------- 57 (179)
T 2nx8_A 14 EEQTYFMQEALKESEKSLQKAEIPIGCVIVK--DGEIIGRGHNARE---------------------------------- 57 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEE--CCEEEEEEECCCC----------------------------------
Confidence 45667999999999864 567778999997 7999999998653
Q ss_pred CCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCC
Q 014081 225 SLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTS 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~ 304 (431)
...+|+.||+|.||+.++++..
T Consensus 58 -----------------------------------~~~d~t~HAE~~AI~~a~~~~~----------------------- 79 (179)
T 2nx8_A 58 -----------------------------------ESNQAIMHAEMMAINEANAHEG----------------------- 79 (179)
T ss_dssp -----------------------------------HHTCTTCCHHHHHHHHHHHHHT-----------------------
T ss_pred -----------------------------------CcCCCccCHHHHHHHHHHHHcC-----------------------
Confidence 1246999999999999887542
Q ss_pred CCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccc
Q 014081 305 IGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384 (431)
Q Consensus 305 ~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~ 384 (431)
.|.++|+|||+|+|||+||++||+|+||+|||||..+++.++.|+.
T Consensus 80 ----------------------------------~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~ 125 (179)
T 2nx8_A 80 ----------------------------------NWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSL 125 (179)
T ss_dssp ----------------------------------SSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTS
T ss_pred ----------------------------------CCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccH
Confidence 4778999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhC
Q 014081 385 HRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTT 422 (431)
Q Consensus 385 ~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~~~ 422 (431)
++++....+||+++|+.|++++||.+++..|..+.+++
T Consensus 126 ~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~ 163 (179)
T 2nx8_A 126 YQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRER 163 (179)
T ss_dssp CCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 99998888999999999999999999999998875443
No 2
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.97 E-value=1.5e-30 Score=238.49 Aligned_cols=147 Identities=24% Similarity=0.356 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCC
Q 014081 150 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 227 (431)
Q Consensus 150 ~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~ 227 (431)
..||+.|+++|+.+ .|..++|||||+ +|+||+.|++...
T Consensus 10 ~~~M~~A~~~A~~a~~~~~~pVGAviV~--~g~Ii~~G~N~~~------------------------------------- 50 (168)
T 1z3a_A 10 EYWMRHALTLAKRAWDEREVPVGAVLVH--NNRVIGEGWNRPI------------------------------------- 50 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH-------------------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEEEE--CCEEEEEEEcccc-------------------------------------
Confidence 56899999999864 467778899995 7999999987643
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 228 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 307 (431)
...+|+.||+|.||+.++++..
T Consensus 51 --------------------------------~~~d~t~HAE~~Ai~~a~~~~~-------------------------- 72 (168)
T 1z3a_A 51 --------------------------------GRHDPTAHAEIMALRQGGLVMQ-------------------------- 72 (168)
T ss_dssp --------------------------------HHTCTTCCHHHHHHHHHHHHHT--------------------------
T ss_pred --------------------------------cCCCcchhHHHHHHHHHHHHcC--------------------------
Confidence 1236999999999999876532
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhh
Q 014081 308 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387 (431)
Q Consensus 308 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l 387 (431)
.|.++|++||+|+|||+||++||+|+||+||||+..+++.++.|+.+++
T Consensus 73 -------------------------------~~~l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~ 121 (168)
T 1z3a_A 73 -------------------------------NYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 121 (168)
T ss_dssp -------------------------------SSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBC
T ss_pred -------------------------------CCcccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHH
Confidence 3778999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCCC
Q 014081 388 QGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNT 424 (431)
Q Consensus 388 ~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~~~~~ 424 (431)
+....+||+++|+.|++++||.+++..|+.+..+++.
T Consensus 122 l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~~ 158 (168)
T 1z3a_A 122 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIK 158 (168)
T ss_dssp TTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTCC
T ss_pred hhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhccc
Confidence 9888999999999999999999999999988766654
No 3
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.97 E-value=2.7e-30 Score=234.67 Aligned_cols=147 Identities=27% Similarity=0.360 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCC
Q 014081 149 IFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSL 226 (431)
Q Consensus 149 ~~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~ 226 (431)
...||+.|+++|+.+ .|..++|||||+ +|+||+.|++.+.
T Consensus 7 d~~~m~~A~~~A~~a~~~~~~pVGAviv~--~g~Ii~~G~N~~~------------------------------------ 48 (159)
T 2b3j_A 7 DIYFMTLAIEEAKKAAQLGEVPIGAIITK--DDEVIARAHNLRE------------------------------------ 48 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH------------------------------------
T ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEEEEE--CCEEEEEEECCCC------------------------------------
Confidence 457899999999864 466777899997 7999999988643
Q ss_pred CCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 227 PPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIG 306 (431)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~ 306 (431)
...+|+.||+|.||..++.+..
T Consensus 49 ---------------------------------~~~~~~~HAE~~Ai~~a~~~~~------------------------- 70 (159)
T 2b3j_A 49 ---------------------------------TLQQPTAHAEHIAIERAAKVLG------------------------- 70 (159)
T ss_dssp ---------------------------------HHTCTTCCHHHHHHHHHHHHHT-------------------------
T ss_pred ---------------------------------CCCCCccCHHHHHHHHHHHHcC-------------------------
Confidence 1236899999999999887542
Q ss_pred CcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchh
Q 014081 307 TPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHR 386 (431)
Q Consensus 307 ~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~ 386 (431)
.|.++|++||+|+|||+||++||+|+||+||||+..+++.++.|+.++
T Consensus 71 --------------------------------~~~l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~ 118 (159)
T 2b3j_A 71 --------------------------------SWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 118 (159)
T ss_dssp --------------------------------SSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCB
T ss_pred --------------------------------CCCcceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHH
Confidence 367899999999999999999999999999999999999999999899
Q ss_pred hcccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCC
Q 014081 387 LQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTN 423 (431)
Q Consensus 387 l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~~~~ 423 (431)
++..+.+||+++|+.|++++||.+|+..|..+..+++
T Consensus 119 ~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~ 155 (159)
T 2b3j_A 119 LLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANK 155 (159)
T ss_dssp TTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC-
T ss_pred HHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9988889999999999999999999999998766554
No 4
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.97 E-value=4.5e-30 Score=229.39 Aligned_cols=138 Identities=28% Similarity=0.353 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCC
Q 014081 150 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 227 (431)
Q Consensus 150 ~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~ 227 (431)
..||+.|+++|+.+ .|..++|||||+ +|+||+.|++...
T Consensus 5 ~~~m~~A~~~A~~a~~~~~~~VGAviv~--~g~Ii~~G~N~~~------------------------------------- 45 (144)
T 2a8n_A 5 THFMELALVEARSAGERDEVPIGAVLVL--DGRVIARSGNRTR------------------------------------- 45 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH-------------------------------------
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEE--CCEEEEEEECCCC-------------------------------------
Confidence 56899999998864 466777899998 7999999998643
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 228 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 307 (431)
...+|+.||+|.||..++++..
T Consensus 46 --------------------------------~~~~~~~HAE~~Ai~~a~~~~~-------------------------- 67 (144)
T 2a8n_A 46 --------------------------------ELNDVTAHAEIAVIRMACEALG-------------------------- 67 (144)
T ss_dssp --------------------------------HHTCTTCCHHHHHHHHHHHHHT--------------------------
T ss_pred --------------------------------CCCCCcCCHHHHHHHHHHHHcC--------------------------
Confidence 1236899999999999987542
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhh
Q 014081 308 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387 (431)
Q Consensus 308 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l 387 (431)
.+.++|++||+|+|||+||++||+|+||+||||+..+++.++.|+.+++
T Consensus 68 -------------------------------~~~~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~ 116 (144)
T 2a8n_A 68 -------------------------------QERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRF 116 (144)
T ss_dssp -------------------------------CSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCG
T ss_pred -------------------------------CCccCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHH
Confidence 3678899999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEeeccHHHHHHHHHHH
Q 014081 388 QGEKSLNHHYAVFRVLLPKEILNKNEVV 415 (431)
Q Consensus 388 ~~~~~ln~~~~V~~gvl~eEa~~l~~~~ 415 (431)
+..+.+||+++|++|++++||.+|+..|
T Consensus 117 ~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 117 FSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp GGSTTCCCCCEEEEC-------------
T ss_pred HhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 9888999999999999999999999876
No 5
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-30 Score=240.93 Aligned_cols=157 Identities=17% Similarity=0.261 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCC
Q 014081 147 QSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHT 224 (431)
Q Consensus 147 ~~~~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~ 224 (431)
.....||+.|+++|+.+ .|.+++|||||+ .|+||+.|.+.+.
T Consensus 24 ~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~--~g~IIa~G~N~~~---------------------------------- 67 (189)
T 3dh1_A 24 EETEKWMEEAMHMAKEALENTEVPVGCLMVY--NNEVVGKGRNEVN---------------------------------- 67 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCEEEEEEE--CCEEEEEEeCCCC----------------------------------
Confidence 34678999999999864 577778999997 7999999987643
Q ss_pred CCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCC
Q 014081 225 SLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTS 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~ 304 (431)
...+|+.||+|.||+.++++.+..
T Consensus 68 -----------------------------------~~~~~t~HAEi~AI~~a~~~~~~~--------------------- 91 (189)
T 3dh1_A 68 -----------------------------------QTKNATRHAEMVAIDQVLDWCRQS--------------------- 91 (189)
T ss_dssp -----------------------------------HHTCTTCCHHHHHHHHHHHHHHHH---------------------
T ss_pred -----------------------------------ccCCCcCcHHHHHHHHHHHHHhhc---------------------
Confidence 123689999999999998764310
Q ss_pred CCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccc
Q 014081 305 IGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 384 (431)
Q Consensus 305 ~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~ 384 (431)
.....+.+.|||||||+|||+||++||+|+||+|||||..++..|+.|+.
T Consensus 92 ------------------------------~~~~~~~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~ 141 (189)
T 3dh1_A 92 ------------------------------GKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 141 (189)
T ss_dssp ------------------------------CCCHHHHHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTS
T ss_pred ------------------------------CcccccccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCccccccc
Confidence 00113779999999999999999999999999999999999999998887
Q ss_pred hhhccc--ccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCCCC
Q 014081 385 HRLQGE--KSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNTN 425 (431)
Q Consensus 385 ~~l~~~--~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~~~~~~ 425 (431)
++++.. ...+|+++|+.|++++||.+|+..|+.+...+.|.
T Consensus 142 ~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~~~~~~P~ 184 (189)
T 3dh1_A 142 LNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNAPK 184 (189)
T ss_dssp CBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC-------
T ss_pred ccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHHhcCCCCC
Confidence 777643 24578899999999999999999999887766654
No 6
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.96 E-value=3.1e-29 Score=230.52 Aligned_cols=143 Identities=25% Similarity=0.365 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCC
Q 014081 150 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 227 (431)
Q Consensus 150 ~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~ 227 (431)
..||+.|+++|+.+ .|..++|||||+ +|+||+.|.+...
T Consensus 24 ~~~M~~A~~~A~~a~~~~~~pVGAvIV~--dg~Ii~~G~N~~~------------------------------------- 64 (171)
T 1wwr_A 24 EYFLKVALREAKRAFEKGEVPVGAIIVK--EGEIISKAHNSVE------------------------------------- 64 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH-------------------------------------
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEEEE--CCEEEEEEECCCC-------------------------------------
Confidence 56899999999864 466777899998 7999999998643
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 228 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 307 (431)
...+|+.||+|.||+.++++..
T Consensus 65 --------------------------------~~~d~t~HAE~~AI~~a~~~~g-------------------------- 86 (171)
T 1wwr_A 65 --------------------------------ELKDPTAHAEMLAIKEACRRLN-------------------------- 86 (171)
T ss_dssp --------------------------------HHTCTTCCHHHHHHHHHHHHHT--------------------------
T ss_pred --------------------------------ccCCcccCHHHHHHHHHHHHcC--------------------------
Confidence 1236899999999999887542
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhh
Q 014081 308 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387 (431)
Q Consensus 308 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l 387 (431)
.|.++|++||+|+|||+||++||+|+||+||||+..+++.++.|+.+++
T Consensus 87 -------------------------------~~~l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~ 135 (171)
T 1wwr_A 87 -------------------------------TKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNI 135 (171)
T ss_dssp -------------------------------CSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCG
T ss_pred -------------------------------CCccCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHH
Confidence 3678899999999999999999999999999999999999999998999
Q ss_pred cccccCCCCcEEEeeccHHHHHHHHHHHHHHHhh
Q 014081 388 QGEKSLNHHYAVFRVLLPKEILNKNEVVAARTST 421 (431)
Q Consensus 388 ~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~~ 421 (431)
+..+.+||+++|++ ++++||.+|+..|+.+.++
T Consensus 136 l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 136 LDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp GGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred HhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 98889999999999 9999999999999887654
No 7
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.95 E-value=5.8e-29 Score=227.27 Aligned_cols=142 Identities=24% Similarity=0.275 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhC--CC-CcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCC
Q 014081 149 IFSFMKSAVELAQSG--DG-SIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTS 225 (431)
Q Consensus 149 ~~~~m~~Aie~a~~g--~g-~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~ 225 (431)
...||+.|+++|+.+ .| .+++|||||+ .|+||+.|.+.+.
T Consensus 11 ~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~--~g~Ii~~G~N~~~----------------------------------- 53 (164)
T 1wkq_A 11 HETFLKRAVTLACEGVNAGIGGPFGAVIVK--DGAIIAEGQNNVT----------------------------------- 53 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSCEEEEEE--TTEEEEEEECCHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEEE--CCEEEEEEecCCc-----------------------------------
Confidence 456899999999864 45 5667899994 7999999988643
Q ss_pred CCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 014081 226 LPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSI 305 (431)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~ 305 (431)
...+|+.||+|.||+.++++..
T Consensus 54 ----------------------------------~~~d~~~HAE~~AI~~a~~~~~------------------------ 75 (164)
T 1wkq_A 54 ----------------------------------TSNDPTAHAEVTAIRKACKVLG------------------------ 75 (164)
T ss_dssp ----------------------------------HHTCTTCCHHHHHHHHHHHHHT------------------------
T ss_pred ----------------------------------CCCCcccCHHHHHHHHHHHHcC------------------------
Confidence 1236899999999999887542
Q ss_pred CCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcc---
Q 014081 306 GTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALG--- 382 (431)
Q Consensus 306 ~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g--- 382 (431)
+|.++|||||+|+|||+||++||+|+||+|||||..+++.++.|
T Consensus 76 ---------------------------------~~~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~ 122 (164)
T 1wkq_A 76 ---------------------------------AYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDD 122 (164)
T ss_dssp ---------------------------------SSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSH
T ss_pred ---------------------------------CCCcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcch
Confidence 37789999999999999999999999999999999999988888
Q ss_pred -cchhhcccccCCCCcEEEeeccHHHHHHHHHHHHHHH
Q 014081 383 -SVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAART 419 (431)
Q Consensus 383 -~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r~ 419 (431)
+.++++..+..++++.| .|++++||.+|+..|+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~~~~ 159 (164)
T 1wkq_A 123 SFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNFA 159 (164)
T ss_dssp HHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHCT
T ss_pred HHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHHhcc
Confidence 66777766666888877 7799999999999998653
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.95 E-value=3.1e-28 Score=228.40 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCC
Q 014081 150 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 227 (431)
Q Consensus 150 ~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~ 227 (431)
..||+.|+++|+.+ .|..+.||||||+.+|+||+.|.+.+.
T Consensus 29 ~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~------------------------------------- 71 (197)
T 2g84_A 29 EARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVV------------------------------------- 71 (197)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTT-------------------------------------
T ss_pred HHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCC-------------------------------------
Confidence 46899999998864 334455899999877999999987542
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 228 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 307 (431)
...+|+.||+|+||+.++++... +
T Consensus 72 --------------------------------~~~~~~~HAE~~Ai~~a~~~~~~-----------~------------- 95 (197)
T 2g84_A 72 --------------------------------PGRCSAAHAEILALSLAQAKLDT-----------H------------- 95 (197)
T ss_dssp --------------------------------TTTCTTCCHHHHHHHHHHHHHTC-----------S-------------
T ss_pred --------------------------------ccCCCccCHHHHHHHHHHHHcCC-----------c-------------
Confidence 12368999999999998875420 0
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhh
Q 014081 308 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387 (431)
Q Consensus 308 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l 387 (431)
++ ....++|||||||+|||+||++||+|+||+|||||..+++.++.|. +.
T Consensus 96 -------------------------~L---~~~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~--~~ 145 (197)
T 2g84_A 96 -------------------------DL---SADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGF--DE 145 (197)
T ss_dssp -------------------------CT---TCTTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTC--CC
T ss_pred -------------------------cc---cccCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCc--cc
Confidence 00 0125789999999999999999999999999999999998877762 21
Q ss_pred ccc------ccCCCCcEEEeeccHHHHHHHHHHHHHHH
Q 014081 388 QGE------KSLNHHYAVFRVLLPKEILNKNEVVAART 419 (431)
Q Consensus 388 ~~~------~~ln~~~~V~~gvl~eEa~~l~~~~~~r~ 419 (431)
... .-.+++++|++|++++||.+|+..|+.+.
T Consensus 146 ~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ll~~f~~~~ 183 (197)
T 2g84_A 146 GPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 183 (197)
T ss_dssp CCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHhcCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 111 11268999999999999999999999864
No 9
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.93 E-value=3.4e-26 Score=208.25 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCC
Q 014081 149 IFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSL 226 (431)
Q Consensus 149 ~~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~ 226 (431)
...||+.|+++|+.+ .|..++||||||..+|+||+.|++.+.
T Consensus 14 d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~------------------------------------ 57 (161)
T 1p6o_A 14 DQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRF------------------------------------ 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHH------------------------------------
T ss_pred HHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCC------------------------------------
Confidence 346899999999864 456677899998778999999987543
Q ss_pred CCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 227 PPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIG 306 (431)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~ 306 (431)
...+|+.||+|.||..+++.
T Consensus 58 ---------------------------------~~~~~t~HAE~~Ai~~a~~~--------------------------- 77 (161)
T 1p6o_A 58 ---------------------------------QKGSATLHGEISTLENCGRL--------------------------- 77 (161)
T ss_dssp ---------------------------------HHTCSSCCHHHHHHHHHCSC---------------------------
T ss_pred ---------------------------------CCCCcccCHHHHHHHHHHHh---------------------------
Confidence 12368999999999976431
Q ss_pred CcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchh
Q 014081 307 TPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHR 386 (431)
Q Consensus 307 ~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~ 386 (431)
+.+.++|+|||+|+|||+||++||+|+||+||||+..++..| +...
T Consensus 78 -------------------------------~~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g---~~~~ 123 (161)
T 1p6o_A 78 -------------------------------EGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEK 123 (161)
T ss_dssp -------------------------------CHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHH
T ss_pred -------------------------------CCccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc---cHHH
Confidence 125678999999999999999999999999999999988654 3445
Q ss_pred hcccccCCCCcEEEeeccHHHHHHHHHHHHHH
Q 014081 387 LQGEKSLNHHYAVFRVLLPKEILNKNEVVAAR 418 (431)
Q Consensus 387 l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r 418 (431)
++. +++++|.. ++++||.++++.|+.+
T Consensus 124 ~l~----~~gi~v~~-~~~~e~~~l~~~f~~~ 150 (161)
T 1p6o_A 124 YLQ----TRGHEVVV-VDDERCKKIMKQFIDE 150 (161)
T ss_dssp HHH----HTTCEEEE-CCCHHHHHHHHHHHHH
T ss_pred HHH----hcCCEEEE-ecHHHHHHHHHHHHHh
Confidence 554 36899988 9999999999999875
No 10
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.90 E-value=2.6e-23 Score=210.84 Aligned_cols=144 Identities=23% Similarity=0.258 Sum_probs=122.0
Q ss_pred hHHHHHHHHHHHHHHHHhCC----CCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCC
Q 014081 145 DSQSIFSFMKSAVELAQSGD----GSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGE 220 (431)
Q Consensus 145 ~~~~~~~~m~~Aie~a~~g~----g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~ 220 (431)
.-..|..||+.|+++|+.+. +++++|||||+ .|+||+.|.+..
T Consensus 10 ~~~~~~~~m~~al~lA~~~~~~~~~~~~vGaviv~--~g~ii~~g~n~~------------------------------- 56 (360)
T 2hxv_A 10 HHHMYETFMKRAIELAKKGLGRVNPNPPVGAVVVK--DGRIIAEGFHPY------------------------------- 56 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTSTTSCCCEEEEEE--TTEEEEEEECCS-------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE--CCEEEEEEeCCC-------------------------------
Confidence 34567889999999999763 45677899996 799999997632
Q ss_pred CCCCCCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 014081 221 SNHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTI 300 (431)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~ 300 (431)
.+..||+|.||+++++ .
T Consensus 57 ------------------------------------------~~~~HAE~~Ai~~a~~--~------------------- 73 (360)
T 2hxv_A 57 ------------------------------------------FGGPHAERMAIESARK--K------------------- 73 (360)
T ss_dssp ------------------------------------------TTSCCHHHHHHHHHHH--T-------------------
T ss_pred ------------------------------------------CCCcCHHHHHHHHHHh--c-------------------
Confidence 2467999999998863 1
Q ss_pred CCCCCCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEecc
Q 014081 301 QPTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFP 374 (431)
Q Consensus 301 ~~~~~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~ 374 (431)
+..+.|||||||+||| +||++||+++||+||||+..
T Consensus 74 --------------------------------------~~~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~ 115 (360)
T 2hxv_A 74 --------------------------------------GEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTR 115 (360)
T ss_dssp --------------------------------------TCCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEEC
T ss_pred --------------------------------------CCCcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEec
Confidence 1247899999999999 79999999999999999999
Q ss_pred CCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCCCCCc
Q 014081 375 NPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNTNAT 427 (431)
Q Consensus 375 ~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r~~~~~~~~~ 427 (431)
+++. ..|.++.++. +++++|..|++++||.+++..|..+..++.|+++
T Consensus 116 d~~~-~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~ 163 (360)
T 2hxv_A 116 DPNP-VSGNGVEKFR----NHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVA 163 (360)
T ss_dssp CCCG-GGCCHHHHHH----TTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEE
T ss_pred Cchh-hhhhHHHHHH----hCCcEEEECCccccchhccceeeeccccchhhhe
Confidence 9988 7777777775 4689999999999999999999999999999875
No 11
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.88 E-value=1.2e-22 Score=206.93 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=75.5
Q ss_pred ccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014081 342 CTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 415 (431)
Q Consensus 342 ~~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~ 415 (431)
+.|||||||+||| +||++||+++||+||||+..+++.+..|.+..++. +++++|..|++++||.+++..|
T Consensus 74 ~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~----~~gi~v~~g~l~~e~~~l~~~f 149 (373)
T 2b3z_A 74 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EAGIEVREGILADQAERLNEKF 149 (373)
T ss_dssp GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHH----TTTCEEEECTTHHHHHHHTHHH
T ss_pred cCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHH----hCCeEEEeCCccccccccccee
Confidence 5799999999999 79999999999999999999999988887777775 4689999999999999999999
Q ss_pred HHHHhhCCCCCc
Q 014081 416 AARTSTTNTNAT 427 (431)
Q Consensus 416 ~~r~~~~~~~~~ 427 (431)
..+..++.|+++
T Consensus 150 ~~~~~~~rP~V~ 161 (373)
T 2b3z_A 150 LHFMRTGLPYVT 161 (373)
T ss_dssp HHHHHHSSCEEE
T ss_pred eeeccccchhhe
Confidence 999999999875
No 12
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.86 E-value=4.9e-22 Score=204.32 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=73.8
Q ss_pred ccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014081 342 CTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 415 (431)
Q Consensus 342 ~~g~tlY~T~EPC------~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~ 415 (431)
+.|||||+|+||| |||++||+|+||+||||+..+++....|.+..++. +++++|..|++++||.+++..|
T Consensus 90 ~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f 165 (402)
T 2g6v_A 90 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEQLNKGF 165 (402)
T ss_dssp GGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHH----HTTCCEEECTTTTHHHHHTHHH
T ss_pred cCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHH----hCCcEEEeCCcchhhHHHhhhh
Confidence 5799999999999 79999999999999999999998887777777765 4689999999999999999999
Q ss_pred HHHHhhCCCCCc
Q 014081 416 AARTSTTNTNAT 427 (431)
Q Consensus 416 ~~r~~~~~~~~~ 427 (431)
..+..++.|+++
T Consensus 166 ~~~~~~~rP~V~ 177 (402)
T 2g6v_A 166 LKRMRTGFPYIQ 177 (402)
T ss_dssp HHHHHSSSCEEE
T ss_pred hhccccccchhe
Confidence 999999999865
No 13
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.82 E-value=1.5e-20 Score=175.38 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=51.8
Q ss_pred ccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhhcccccCCCCcEEEeeccHHHHHHH
Q 014081 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNK 411 (431)
Q Consensus 340 ~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l 411 (431)
+.+.|+|||||+|||+||+++|+++||+||||+.++++.+ |.+..++... +++|.. +..+++.++
T Consensus 118 ~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~--~~~~~~l~~a----GI~v~~-~~~~~~~~~ 182 (193)
T 1vq2_A 118 SSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK--PGWDDILRNA----GIEVFN-VPKKNLNKL 182 (193)
T ss_dssp CCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC--TTTTHHHHHT----TCEEEE-CCGGGCCSS
T ss_pred CCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc--hHHHHHHHHC----CCEEEE-eCHHHHHHh
Confidence 3468999999999999999999999999999998887665 3335666643 688887 666666543
No 14
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.82 E-value=2.5e-20 Score=173.07 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhC-CCCcceEEEEEcCCCCeeeeeecCcceecccccccccccccCCCccccccccccCCCCCCCCCC
Q 014081 149 IFSFMKSAVELAQSG-DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 227 (431)
Q Consensus 149 ~~~~m~~Aie~a~~g-~g~~~~~AViVDP~~~~iia~a~d~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~ 227 (431)
...||+.|+++|+.+ .++.++|||||+ +|+||+.|.+...... .+|..
T Consensus 42 de~~M~~A~~~A~~s~~~~~~VGAVIV~--dg~Iia~G~N~~~~~~--------~~c~d--------------------- 90 (184)
T 2hvw_A 42 QDYFMANAELISKRSTCNRAYVGAVLVK--NNRIIATGYNGGVADT--------DNCDD--------------------- 90 (184)
T ss_dssp HHHHHHHHHHHGGGCCCTTCCCEEEEEE--TTEEEEEEECEESTTS--------CCHHH---------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEE--CCEEEEEEECCCcccc--------ccccc---------------------
Confidence 456899999999975 456677899996 7999999998653100 00000
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014081 228 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 307 (431)
.-|. + ++...+|+.||+|+||..++++
T Consensus 91 --------------~g~~-~----------~~~~~~~t~HAE~~AI~~A~~~---------------------------- 117 (184)
T 2hvw_A 91 --------------VGHE-M----------EDGHCIRTVHAEMNALIQCAKE---------------------------- 117 (184)
T ss_dssp --------------HCCC-E----------ETTEECSEECHHHHHHHHHHHH----------------------------
T ss_pred --------------cccc-c----------cccccCCccCHHHHHHHHHHHc----------------------------
Confidence 0000 0 0123478999999999988753
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCCcccchhh
Q 014081 308 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 387 (431)
Q Consensus 308 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~~g~~g~~~~l 387 (431)
++.+.|++||+|+|||+||+++|+|+||+||||+..+++... ...+
T Consensus 118 -------------------------------g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~---~~~~ 163 (184)
T 2hvw_A 118 -------------------------------GISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPF---AIEL 163 (184)
T ss_dssp -------------------------------TCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHH---HHHH
T ss_pred -------------------------------CCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHH---HHHH
Confidence 135789999999999999999999999999999998875432 2455
Q ss_pred cccccCCCCcEEEeeccHH
Q 014081 388 QGEKSLNHHYAVFRVLLPK 406 (431)
Q Consensus 388 ~~~~~ln~~~~V~~gvl~e 406 (431)
+.+ .+++|..+.+++
T Consensus 164 L~~----aGIeV~~~~~~~ 178 (184)
T 2hvw_A 164 MTQ----KEVEYVQHDVPR 178 (184)
T ss_dssp HHH----HTCEEEECCCCC
T ss_pred HHH----CCCEEEEecchh
Confidence 554 378888877653
No 15
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=173.21 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=51.1
Q ss_pred ccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCC-CCCcccchhhcccccCCCCcEEEeeccHHHHHHHHHHHHHH
Q 014081 340 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPN-EGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAAR 418 (431)
Q Consensus 340 ~~~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~~-~g~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~~~r 418 (431)
+.+.|+|||+|+|||.||+++|+++||+||||+..... ......+..++... +++|.. +++|+.+++..|..+
T Consensus 93 ~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~a----GI~V~~--~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 93 TDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMA----GVTFRK--FIPKCSKIVIDFDSI 166 (178)
T ss_dssp -CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHH----TCEEEE--CCCSCSEEEEEGGGC
T ss_pred CCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHHC----CCEEEE--ccHHHHHHHHHHHhh
Confidence 34679999999999999999999999999999987322 11111124555543 677776 666776666555443
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.59 E-value=3.1e-15 Score=142.26 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=32.8
Q ss_pred ccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCC
Q 014081 342 CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNP 376 (431)
Q Consensus 342 ~~g~tlY~T~EPC~MCa~Al~~srI~rVvyg~~~~ 376 (431)
+.|||||+|+|||+||++||+|+||+|||||..+.
T Consensus 55 L~GaTLYVTLEPC~MCAgAII~AGIkRVVYGa~~~ 89 (278)
T 3g8q_A 55 VEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGR 89 (278)
T ss_dssp CTTCEEEESSCCCHHHHHHHHTTTCCEEEEEECSS
T ss_pred CCCcEEEEeCCchHHHHHHHHHhCCCEEEEEecCC
Confidence 57999999999999999999999999999999754
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.46 E-value=2.1e-13 Score=127.16 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=52.1
Q ss_pred cCcEEEEeCCChHHHHHHHHHh-----CCCeEEEeccCCCCC--CcccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014081 343 TGYDIYLVWEPCVMCAMALVHQ-----RIRRIFYAFPNPNEG--ALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 415 (431)
Q Consensus 343 ~g~tlY~T~EPC~MCa~Al~~s-----rI~rVvyg~~~~~~g--~~g~~~~l~~~~~ln~~~~V~~gvl~eEa~~l~~~~ 415 (431)
.|+|||||+|||+||+.+|+++ ||+|||||+.++... ....+...+.+ .+++|.. +..+ ++...|
T Consensus 83 ~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~----aGI~V~~-~~~~---e~~~~w 154 (190)
T 2nyt_A 83 YNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKE----AGCKLRI-MKPQ---DFEYVW 154 (190)
T ss_pred CCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHHH----CCCEEEE-ecHH---HHHHHH
Confidence 4999999999999999999999 999999998765321 11122344443 4777774 2223 455666
Q ss_pred HHHHh-hCC---CCCc
Q 014081 416 AARTS-TTN---TNAT 427 (431)
Q Consensus 416 ~~r~~-~~~---~~~~ 427 (431)
..+.. .+. ||.+
T Consensus 155 ~~fv~~~~~~~~pf~~ 170 (190)
T 2nyt_A 155 QNFVEQEEGESKAFQP 170 (190)
T ss_pred HHHHHccCCcCCccHh
Confidence 66655 444 6643
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=98.46 E-value=1.5e-06 Score=76.73 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhC--C-CCcceEEEEEcCCCCeeeeeecCc
Q 014081 150 FSFMKSAVELAQSG--D-GSIVNAAVIVDPSIKQEIASACDQ 188 (431)
Q Consensus 150 ~~~m~~Aie~a~~g--~-g~~~~~AViVDP~~~~iia~a~d~ 188 (431)
..+|+.|+++++.. . +..++||+|++. +|+|+ .|++.
T Consensus 4 ~~l~~~A~~aa~~ayapYs~~~VGAal~~~-dG~i~-~G~Nv 43 (136)
T 1uwz_A 4 QELITEALKARDMAYAPYSKFQVGAALLTK-DGKVY-RGCNI 43 (136)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCEEEEEEET-TSCEE-EEECB
T ss_pred HHHHHHHHHHHHhccCccCCCCEEEEEEeC-CCeEE-EEeCc
Confidence 46899999998864 2 566677888873 57888 67764
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=97.99 E-value=7.1e-05 Score=66.80 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=23.9
Q ss_pred cccCcEEEEe-----CCChHHHHHHHHHhCCCeEEE
Q 014081 341 LCTGYDIYLV-----WEPCVMCAMALVHQRIRRIFY 371 (431)
Q Consensus 341 ~~~g~tlY~T-----~EPC~MCa~Al~~srI~rVvy 371 (431)
.+..+.+|++ .+||.||..+|...+-.-.|+
T Consensus 81 ~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~~~~~v~ 116 (146)
T 2fr5_A 81 DFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVY 116 (146)
T ss_dssp CEEEEEEEESCSSSCCCCCHHHHHHHHHTCSSCEEE
T ss_pred ceEEEEEEeCCCCcccCCCHHHHHHHHHhCCCCEEE
Confidence 4577788887 899999999999987333333
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=97.78 E-value=0.00031 Score=61.29 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecC
Q 014081 150 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACD 187 (431)
Q Consensus 150 ~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d 187 (431)
..+|+.|+++++.. -+...+||++++. +|+|+. |++
T Consensus 8 ~~L~~~A~~a~~~ay~~s~f~VGAal~~~-dG~i~~-G~N 45 (130)
T 2z3g_A 8 STLIERATATINSIPISEDYSVASAALSS-DGRIFT-GVN 45 (130)
T ss_dssp HHHHHHHHHHHHHSCCCSSSCEEEEEEET-TSCEEE-EEC
T ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEEEec-CCeEEE-Eec
Confidence 46889999988864 3444567788863 578884 665
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=96.36 E-value=0.023 Score=50.10 Aligned_cols=36 Identities=11% Similarity=-0.068 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhC--CCCcceEEEEEcCCCCeeeeeecCc
Q 014081 150 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQ 188 (431)
Q Consensus 150 ~~~m~~Aie~a~~g--~g~~~~~AViVDP~~~~iia~a~d~ 188 (431)
..+|+.|+++++.. -+..+ ||++++ ++|+|+ .|++.
T Consensus 5 ~~L~~~A~~a~~~ayaPyS~V-GAAl~~-~dG~i~-~G~Nv 42 (142)
T 3b8f_A 5 QQLYDVVKQLIEQRYPNDWGG-AAAIRV-EDGTIY-TSVAP 42 (142)
T ss_dssp HHHHHHHHHHHHHHCSSSCEE-EEEEEE-TTSCEE-EECCC
T ss_pred HHHHHHHHHHHHhcCCCCCCE-EEEEEe-CCCcEE-EEECc
Confidence 46788898887753 33344 555554 567877 67653
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=94.70 E-value=0.32 Score=42.77 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhC---CCCcceEEEEEcCCCCeeeeeecC
Q 014081 149 IFSFMKSAVELAQSG---DGSIVNAAVIVDPSIKQEIASACD 187 (431)
Q Consensus 149 ~~~~m~~Aie~a~~g---~g~~~~~AViVDP~~~~iia~a~d 187 (431)
...+++.|+++++.. -+...+||++++ .+|+|+. |++
T Consensus 11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~-~dG~i~~-G~N 50 (142)
T 1r5t_A 11 LEALKRAALKACELSYSPYSHFRVGCSILT-NNDVIFT-GAN 50 (142)
T ss_dssp HHHHHHHHHHHGGGCBCTTTCCCEEEEEEC-TTSCEEE-EEC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEe-CCCCEEE-EEe
Confidence 456788999887753 133345677776 4577774 654
No 23
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=93.21 E-value=0.7 Score=40.54 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHhCCCeEEEe
Q 014081 351 WEPCVMCAMALVHQRIRRIFYA 372 (431)
Q Consensus 351 ~EPC~MCa~Al~~srI~rVvyg 372 (431)
..||.||-..|...+-..|+..
T Consensus 90 ~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 90 LMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp CCCCHHHHHHHHHHHCTTCEEE
T ss_pred CCCCHHHHHHHHHhCCCCEEEE
Confidence 7899999999998762334443
No 24
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=91.65 E-value=1.8 Score=37.94 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=13.5
Q ss_pred CCChHHHHHHHHHhC
Q 014081 351 WEPCVMCAMALVHQR 365 (431)
Q Consensus 351 ~EPC~MCa~Al~~sr 365 (431)
..||.||-..|...+
T Consensus 92 ~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 92 VPPCGACRQVMVELC 106 (141)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred cCcCHHHHHHHHHhc
Confidence 679999999999975
No 25
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=83.71 E-value=9.5 Score=37.33 Aligned_cols=25 Identities=4% Similarity=-0.243 Sum_probs=18.3
Q ss_pred ccCcEEEEeCC----ChHHHHHHHHHhCC
Q 014081 342 CTGYDIYLVWE----PCVMCAMALVHQRI 366 (431)
Q Consensus 342 ~~g~tlY~T~E----PC~MCa~Al~~srI 366 (431)
++...+|...+ ||.||-..|...+-
T Consensus 257 i~~i~vv~~~~~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 257 IQRAVLAEKADAPLIQWDATSATLKALGC 285 (294)
T ss_dssp EEEEEEEECTTCSSCCHHHHHHHHHHHTC
T ss_pred EEEEEEEecCCCCcCccHHHHHHHHHHCC
Confidence 44555555555 99999999998763
No 26
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=79.44 E-value=14 Score=32.72 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=13.1
Q ss_pred CCChHHHHHHHHHhC
Q 014081 351 WEPCVMCAMALVHQR 365 (431)
Q Consensus 351 ~EPC~MCa~Al~~sr 365 (431)
..||-+|-..|...+
T Consensus 105 ~~PCG~CRQ~L~Ef~ 119 (150)
T 3mpz_A 105 LMPCGRCRQVLLEHG 119 (150)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 679999999998875
No 27
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=75.65 E-value=3.8 Score=38.20 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=23.3
Q ss_pred CcEEEEeCCChHHHHHHHHHh-----CCCeEEEecc
Q 014081 344 GYDIYLVWEPCVMCAMALVHQ-----RIRRIFYAFP 374 (431)
Q Consensus 344 g~tlY~T~EPC~MCa~Al~~s-----rI~rVvyg~~ 374 (431)
.-|.|+|.-||+-||..|+.. .+.-.||++.
T Consensus 101 ~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aR 136 (203)
T 3v4k_A 101 RVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTAR 136 (203)
T ss_pred EEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEe
Confidence 568999999999999999873 4444555443
No 28
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=63.60 E-value=15 Score=36.01 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.5
Q ss_pred EEEEeCCChHHHHHHHHHhC
Q 014081 346 DIYLVWEPCVMCAMALVHQR 365 (431)
Q Consensus 346 tlY~T~EPC~MCa~Al~~sr 365 (431)
.++++..||-||-..|...+
T Consensus 121 ~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 121 AITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp EEEESSCCCHHHHHHHTTBT
T ss_pred EEEEEcCCCHHHHHHHHHhC
Confidence 34556789999999999985
No 29
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=61.91 E-value=6.2 Score=36.36 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=26.8
Q ss_pred CcEEEEeCCChHHHHHHHHH-----hCCCeEEEeccCC
Q 014081 344 GYDIYLVWEPCVMCAMALVH-----QRIRRIFYAFPNP 376 (431)
Q Consensus 344 g~tlY~T~EPC~MCa~Al~~-----srI~rVvyg~~~~ 376 (431)
.-|-|+|.-||+-||..|+. ..+.-.||.+.--
T Consensus 87 ~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aRLY 124 (190)
T 3vow_A 87 QVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLY 124 (190)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEECT
T ss_pred EEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEecc
Confidence 46899999999999999886 4677778877654
No 30
>3un7_A PBPA, penicillin-binding protein A; transpeptidase, peptidoglycan, B lactam, transferase; 2.00A {Mycobacterium tuberculosis} PDB: 3upn_A* 3upo_A* 3upp_A* 3lo7_A
Probab=40.90 E-value=27 Score=35.67 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCCeeeeeec
Q 014081 168 VNAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~ 186 (431)
-+++|++||.+|+|+|-+.
T Consensus 130 ~ga~Vvmdp~TGeILAmas 148 (462)
T 3un7_A 130 KGAVVALEPSTGKILALVS 148 (462)
T ss_dssp CEEEEEECTTTCBEEEEEE
T ss_pred eEEEEEEECCCCcEEEEec
Confidence 3678999999999999775
No 31
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan synthetase; transpeptidase, transferase; 2.30A {Acinetobacter}
Probab=38.27 E-value=31 Score=36.29 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCCeeeeeec
Q 014081 168 VNAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~ 186 (431)
.+++|++||.+|+|+|-+.
T Consensus 232 ~ga~Vvmdp~TGeILAm~s 250 (554)
T 3ue3_A 232 SATAIAVDVKTGEILAMTS 250 (554)
T ss_dssp EEEEEEEETTTCBEEEEEE
T ss_pred eEEEEEEECCCCeEEEEEe
Confidence 4689999999999999876
No 32
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell DIV cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=38.25 E-value=31 Score=36.08 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=17.2
Q ss_pred ceEEEEEcCCCCeeeeeecC
Q 014081 168 VNAAVIVDPSIKQEIASACD 187 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~d 187 (431)
.+++|++||.+|+|+|-+..
T Consensus 223 ~ga~Vv~d~~TGeIlAm~s~ 242 (542)
T 3equ_A 223 AGTVVVLDARTGEILALANT 242 (542)
T ss_dssp EEEEEEEETTTCBEEEEEEE
T ss_pred eEEEEEEECCCCeEEEEEeC
Confidence 46799999999999998763
No 33
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex; HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A* 3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 4fsf_A* 3oc2_A 3ocl_A* 3ocn_A*
Probab=35.74 E-value=37 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCeeeeeec
Q 014081 168 VNAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~ 186 (431)
-+++|++||.+|+|+|-+.
T Consensus 205 ~ga~Vvmdp~TGeILAm~s 223 (538)
T 3pbt_A 205 AGSLVIMDVKTGEILAMTN 223 (538)
T ss_dssp EEEEEEEETTTCBEEEEEE
T ss_pred eEEEEEEECCCCcEEEEEe
Confidence 4689999999999999776
No 34
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=29.87 E-value=41 Score=36.13 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCeeeeeec
Q 014081 168 VNAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~ 186 (431)
.+++|++||.+|+|+|-+.
T Consensus 240 ~ga~Vv~dp~TGeIlAm~~ 258 (702)
T 1qme_A 240 YMTATLVSAKTGEILATTQ 258 (702)
T ss_dssp EEEEEEEETTTCBEEEEEE
T ss_pred eEEEEEEECCCCcEEEEec
Confidence 3689999999999999774
No 35
>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*
Probab=22.87 E-value=86 Score=31.04 Aligned_cols=19 Identities=32% Similarity=0.186 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCeeeeeec
Q 014081 168 VNAAVIVDPSIKQEIASAC 186 (431)
Q Consensus 168 ~~~AViVDP~~~~iia~a~ 186 (431)
-+++|++||.+|+|+|-+.
T Consensus 65 ~ga~Vv~d~~TG~IlAm~~ 83 (390)
T 2v2f_F 65 QVASTVVDVSNGKVIAQLG 83 (390)
T ss_dssp EEEEEEEETTTTEEEEEEC
T ss_pred eEEEEEEECCCCcEEEEEE
Confidence 4689999999999999865
No 36
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell WALL, peptidoglycan, inhibitor; HET: E08; 1.62A {Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A* 2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A* 2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Probab=20.57 E-value=76 Score=32.81 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=17.7
Q ss_pred cceEEEEEcCCCCeeeeeecC
Q 014081 167 IVNAAVIVDPSIKQEIASACD 187 (431)
Q Consensus 167 ~~~~AViVDP~~~~iia~a~d 187 (431)
.-+|+|++||.+|+|+|....
T Consensus 123 ~~~a~Vv~D~~TG~IlA~vgg 143 (494)
T 2y2m_A 123 VEVGNVLMDNQTGAILGFVGG 143 (494)
T ss_dssp CEEEEEEEETTTCBEEEEECC
T ss_pred ceEEEEEEECCCCeEEEEEEC
Confidence 456899999999999997763
Done!