BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014082
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AEX|A Chain A, The 1.58a Crystal Structure Of Human Coproporphyrinogen
Oxidase Reveals The Structural Basis Of Hereditary
Coproporphyria
Length = 346
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/346 (47%), Positives = 208/346 (60%), Gaps = 43/346 (12%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNV 148
++ + E +I + Q VCQA+ + DGG F D W R GGGGIS VLQDG ++EKAGV++
Sbjct: 40 MKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSI 99
Query: 149 SVVYGVMPPEXXXXXXXXXS--DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETD 206
SVV+G + E K G +PF A G+SSV+HPKNP APT+HFNYRYFE +
Sbjct: 100 SVVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE 159
Query: 207 APKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYF 266
+QWWFGGG DLTP Y+ +ED HFH T K ACD+ P YP+FKKWCDDYF
Sbjct: 160 EADGN----KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYF 215
Query: 267 YIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326
+I H FFDDL+ +E + F CA +V+P+YIP+++K D FT Q K
Sbjct: 216 FIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKL 275
Query: 327 WQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHVSFLEHSGEYAS 385
WQQLRRGRYVEFNL+YDRGT FGL T G RIESIL+SLPLTARWEY
Sbjct: 276 WQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEY-------------- 321
Query: 386 DVTKSLKSWTDEGSFFFFSLFSMQNPKEGSEEWKLLDACINPKEWI 431
M +P E S+E ++L+ +P++W+
Sbjct: 322 ----------------------MHSPSENSKEAEILEVLRHPRDWV 345
>pdb|1TKL|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TKL|B Chain B, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TLB|A Chain A, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|D Chain D, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|Q Chain Q, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|S Chain S, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|U Chain U, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|W Chain W, Yeast Coproporphyrinogen Oxidase
Length = 326
Score = 292 bits (748), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 199/356 (55%), Gaps = 53/356 (14%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 10 IRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVN 68
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 69 VSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTT 128
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 129 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 185
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 186 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRK 245
Query: 317 DTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHVS 375
D P+T + + WQ +RRGRYVEFNL+YDRGT FGL+T G R+ESIL+SLP A W Y+H
Sbjct: 246 DMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNH-- 303
Query: 376 FLEHSGEYASDVTKSLKSWTDEGSFFFFSLFSMQNPKEGSEEWKLLDACINPKEWI 431
+P GS E KLL+ P+EW+
Sbjct: 304 ----------------------------------HPAPGSREAKLLEVTTKPREWV 325
>pdb|1TXN|A Chain A, Crystal Structure Of Coproporphyrinogen Iii Oxidase
pdb|1TXN|B Chain B, Crystal Structure Of Coproporphyrinogen Iii Oxidase
Length = 328
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 155/356 (43%), Positives = 199/356 (55%), Gaps = 53/356 (14%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 12 IRQQXEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSXVIQDGTTFEKGGVN 70
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 71 VSVVYGQLSPAAVSAXKADHKNLRLPEDPKTGLPVTDGVKFFACGLSXVIHPVNPHAPTT 130
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 131 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 187
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 188 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKXVEDCFDAFLPSYLTIVKRRK 247
Query: 317 DTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHVS 375
D P+T + + WQ +RRGRYVEFNL+YDRGT FGL+T G R+ESIL SLP A W Y+H
Sbjct: 248 DXPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILXSLPEHASWLYNH-- 305
Query: 376 FLEHSGEYASDVTKSLKSWTDEGSFFFFSLFSMQNPKEGSEEWKLLDACINPKEWI 431
+P GS E KLL+ P+EW+
Sbjct: 306 ----------------------------------HPAPGSREAKLLEVTTKPREWV 327
>pdb|3EJO|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
pdb|3EJO|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Donovani
Length = 310
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 129/272 (47%), Positives = 159/272 (58%), Gaps = 9/272 (3%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV+ +GA+ EK GVN S VYG P
Sbjct: 25 QDDICEALEAEDGQATFMEDKWTREGGGGGRTRVMVNGAVIEKGGVNFSHVYGKGLPGSS 84
Query: 161 XXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWF 220
+ F A G+S V+HPKNP PT H N R F + P WWF
Sbjct: 85 TERHPDMTG-----CNFQAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----VWWF 135
Query: 221 GGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXX 280
GGG DLTP Y EED ++FH + C F Y RFK WCD+YF+I +
Sbjct: 136 GGGFDLTPYYAVEEDCRYFHQVAQDLCKPFGADVYTRFKVWCDEYFFIPYRNEARGIGGL 195
Query: 281 FFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNL 340
FFDDLN++ E F I AYIPI+ +RK+TP+T+Q +Q+ RRGRY EFNL
Sbjct: 196 FFDDLNEWPFEKCFEFVQAVGKGYIDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNL 255
Query: 341 VYDRGTTFGLKTGGRIESILVSLPLTARWEYD 372
V DRGT FGL++GGR ESIL+SLP ARW YD
Sbjct: 256 VIDRGTKFGLQSGGRTESILISLPPRARWGYD 287
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWR|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/275 (47%), Positives = 161/275 (58%), Gaps = 15/275 (5%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV+ DGA+ EK GVN S VYG P
Sbjct: 24 QDDICEALEAEDGQATFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKGLP--- 80
Query: 161 XXXXXXXSDEKPGPIP---FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQ 217
S E+ I F A G+S V+HPKNP PT H N R F + P
Sbjct: 81 -----MSSTERHPDIAGCNFEAMGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----V 131
Query: 218 WWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXX 277
WWFGGG DLTP Y EED + FH + C F Y RFK WCD+YF+I +
Sbjct: 132 WWFGGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGI 191
Query: 278 XXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVE 337
FFDDLN++ E F + AYIPI+ +RK+TP+T+Q +Q+ RRGRY E
Sbjct: 192 GGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAE 251
Query: 338 FNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYD 372
FNLV DRGT FGL++GGR ESIL+SLP ARW Y+
Sbjct: 252 FNLVIDRGTKFGLQSGGRTESILISLPPRARWGYN 286
>pdb|3E8J|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
pdb|3E8J|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Naiffi
Length = 306
Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 128/279 (45%), Positives = 160/279 (57%), Gaps = 9/279 (3%)
Query: 94 EKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYG 153
++ + QD +C AIE D F ED W+R GGGGG +RV+ +GA+ EK GVN S VYG
Sbjct: 14 KEFLLKLQDDICHAIEAEDEQATFMEDKWTREGGGGGRTRVIANGAVIEKGGVNFSHVYG 73
Query: 154 VMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPG 213
P + + A G+S V+HPKNP PT H N R F + P
Sbjct: 74 KGLPGSSTERHPDMAG-----CNYQAMGVSLVIHPKNPHVPTSHANVRLFVAEKEGKEP- 127
Query: 214 APRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXX 273
WWFGGG DLTP Y EED +FH + C F Y RFK WCD+YF+I H
Sbjct: 128 ---VWWFGGGFDLTPYYAVEEDCYYFHHVAQELCRPFGADVYERFKAWCDEYFFIPHRNE 184
Query: 274 XXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRG 333
FFDDLN++ E +F I AYIPI+ +RK+TP+T+Q +Q+ RRG
Sbjct: 185 ARGIGGLFFDDLNEWPFEKCFAFMQAVGKGFIDAYIPIVNRRKNTPYTEQQVEFQEFRRG 244
Query: 334 RYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYD 372
RY EFNLV DRGT FGL++GGR ESIL+SLP ARW Y+
Sbjct: 245 RYAEFNLVIDRGTKFGLQSGGRTESILMSLPPRARWGYN 283
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|1VJU|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|3DWS|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWS|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 237 bits (605), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 128/272 (47%), Positives = 156/272 (57%), Gaps = 9/272 (3%)
Query: 101 QDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEXX 160
QD +C+A+E DG F ED W+R GGGGG +RV DGA+ EK GVN S VYG P
Sbjct: 24 QDDICEALEAEDGQATFVEDKWTREGGGGGRTRVXVDGAVIEKGGVNFSHVYGKGLPXSS 83
Query: 161 XXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWF 220
+ F A G+S V+HPKNP PT H N R F + P WWF
Sbjct: 84 TERHPDIAG-----CNFEAXGVSLVIHPKNPHVPTSHANVRLFVAEREGKEP----VWWF 134
Query: 221 GGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXX 280
GGG DLTP Y EED + FH + C F Y RFK WCD+YF+I +
Sbjct: 135 GGGFDLTPYYAVEEDCRDFHQVAQDLCKPFGADVYARFKGWCDEYFFIPYRNEARGIGGL 194
Query: 281 FFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNL 340
FFDDLN++ E F AYIPI+ +RK+TP+T+Q +Q+ RRGRY EFNL
Sbjct: 195 FFDDLNEWPFEKCFEFVQAVGKGYXDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNL 254
Query: 341 VYDRGTTFGLKTGGRIESILVSLPLTARWEYD 372
V DRGT FGL++GGR ESIL+SLP ARW Y+
Sbjct: 255 VIDRGTKFGLQSGGRTESILISLPPRARWGYN 286
>pdb|1TK1|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
Length = 260
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/258 (44%), Positives = 152/258 (58%), Gaps = 16/258 (6%)
Query: 89 VRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPG-GGGGISRVLQDGAIWEKAGVN 147
+R + E +IR Q + Q +E D KF D W+R GGGG S V+QDG +EK GVN
Sbjct: 7 IRQQMEALIRRKQAEITQGLESIDTV-KFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVN 65
Query: 148 VSVVYGVMPPEXXXXXXXXX------SDEKPG-----PIPFFAAGISSVLHPKNPFAPTL 196
VSVVYG + P D K G + FFA G+S V+HP NP APT
Sbjct: 66 VSVVYGQLSPAAVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTT 125
Query: 197 HFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYP 256
H NYRYFET + G P+ WWFGGG DLTP+Y++EED + FH K A DK D YP
Sbjct: 126 HLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYP 182
Query: 257 RFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRK 316
RFKKWCD+YFYI H FFDD ++ D + +L +C ++ +P+Y+ I+++RK
Sbjct: 183 RFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRK 242
Query: 317 DTPFTDQHKAWQQLRRGR 334
D P+T + + WQ +RRGR
Sbjct: 243 DMPYTKEEQQWQAIRRGR 260
>pdb|2IDX|A Chain A, Structure Of Human Atp:cobalamin Adenosyltransferase Bound
To Atp.
pdb|2IDX|B Chain B, Structure Of Human Atp:cobalamin Adenosyltransferase Bound
To Atp.
pdb|2IDX|C Chain C, Structure Of Human Atp:cobalamin Adenosyltransferase Bound
To Atp
Length = 196
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 346 TTFGLKTGGRIESILVSLPLTARWEYDHVSFLEHSGEYASDVTKSLKSWTDEGSFFFFSL 405
T F L +GG+I S L R V L GE ++V K L +D + F+L
Sbjct: 114 TAFILPSGGKISSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSD----YLFTL 169
Query: 406 FSMQNPKEGSEE 417
KEG++E
Sbjct: 170 ARYAAMKEGNQE 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,733,804
Number of Sequences: 62578
Number of extensions: 588063
Number of successful extensions: 1122
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 13
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)