Query 014082
Match_columns 431
No_of_seqs 186 out of 765
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 05:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aex_A Coproporphyrinogen III 100.0 9E-154 3E-158 1134.2 19.5 321 71-431 21-345 (346)
2 1txn_A Coproporphyrinogen III 100.0 4E-153 1E-157 1124.4 21.1 312 80-431 3-327 (328)
3 1vju_A Coproporphyrinogen III 100.0 1E-151 4E-156 1105.9 15.5 300 87-431 10-309 (309)
4 2k4z_A DSRR; ISCA/SUFA/HESB li 39.5 76 0.0026 26.9 6.8 56 126-196 55-119 (125)
5 3bdk_A D-mannonate dehydratase 31.4 32 0.0011 34.5 3.6 105 179-301 211-322 (386)
6 2r7r_A RNA-dependent RNA polym 24.3 28 0.00094 39.0 1.8 53 94-150 645-697 (1095)
7 2r39_A FIXG-related protein; s 22.6 50 0.0017 27.1 2.7 24 336-359 11-34 (118)
8 1q8d_A GDNF family receptor al 18.3 62 0.0021 27.8 2.4 22 223-244 56-95 (108)
9 2oa4_A SIR5; structure, struct 18.3 66 0.0023 27.0 2.5 23 242-265 52-74 (101)
10 1pzr_A Erythronolide synthase; 15.8 36 0.0012 26.2 0.3 12 219-230 13-24 (60)
No 1
>2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens}
Probab=100.00 E-value=8.6e-154 Score=1134.20 Aligned_cols=321 Identities=55% Similarity=1.050 Sum_probs=305.4
Q ss_pred ccccCCC-CccCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEE
Q 014082 71 TFLRESD-DKESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVS 149 (431)
Q Consensus 71 ~~~~~~~-~~~~~~~~~~~~r~~~e~~~~~LQ~~Ic~~lE~ldg~~~F~~D~W~R~~GGGG~s~Vl~dG~VFEKaGVN~S 149 (431)
+||.+++ +.+.+.+++++||++|++||+.||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||
T Consensus 21 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~s~Vl~~G~VFEKaGVN~S 100 (346)
T 2aex_A 21 SFMAPPVTDLGELRRRPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWERKEGGGGISCVLQDGCVFEKAGVSIS 100 (346)
T ss_dssp TSSSCCSSCHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEETTTEEEEEEEEESCSSEEEEEEEEE
T ss_pred cccccCcCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEecCccCCCCCCeEEEEeCCcEEEecceEEE
Confidence 4566655 445566778899999999999999999999999998789999999999999999999999999999999999
Q ss_pred EEeccCCHHHHHHccccccCC--CCCCCCeEEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCC
Q 014082 150 VVYGVMPPEAYRAAKAAASDE--KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLT 227 (431)
Q Consensus 150 ~V~G~lpp~aa~~~~~~~~~~--~~~~~~F~AtGISlViHPrNP~vPTvH~N~RyFe~~~~~~~~g~~~~wWFGGG~DLT 227 (431)
+|||+++|+++++|+++++.. ..++.+|+||||||||||+||||||||||||||++. .+|..++||||||+|||
T Consensus 101 ~V~G~~~p~~~~~~~~~~~~l~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~----~~g~~~~wWFGGG~DLT 176 (346)
T 2aex_A 101 VVHGNLSEEAAKQMRSRGKVLKTKDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVE----EADGNKQWWFGGGCDLT 176 (346)
T ss_dssp EEEEECCHHHHHHHHHTTCCCCCBTTBCEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE----CSTTCEEEEEEEEEEEE
T ss_pred EEeccCChHHHHhcCCcccccccccCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEee----cCCCCCceeecCCccCC
Confidence 999999999999999976543 346789999999999999999999999999999993 45666789999999999
Q ss_pred CCCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCcCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhh
Q 014082 228 PAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPA 307 (431)
Q Consensus 228 P~Y~~eEDa~hFH~~lK~aCD~~~~~~Yp~fKkwCDeYFyIpHR~E~RGIGGIFFDdLn~~~~e~~faFv~~vg~afl~a 307 (431)
|||+++||++|||+++|++||+||+++||+||+|||+|||||||+|+||||||||||||++++|++|+|+++||++||+|
T Consensus 177 P~Y~~~eD~~hFH~~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGVGGIFfDdln~~~~e~~faf~~~vg~afl~a 256 (346)
T 2aex_A 177 PTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPS 256 (346)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTEEGGGTEESSSEEEEEEEECCSCHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcChHhHHHHHHHHHHhcChhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhCCCCCCHHHHHHHHHcccceeEEEEeeeccceecccc-CCceeeeeeeCCCcccccccccccccccCccccc
Q 014082 308 YIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHVSFLEHSGEYASD 386 (431)
Q Consensus 308 YlPIv~rr~~~pyte~er~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggRiESILmSLPp~a~W~Y~~~~~~~~~~~~~~~ 386 (431)
|+|||+||+++||||+||+|||+||||||||||||||||+||||| |||||||||||||+|+|+|+|
T Consensus 257 Y~pIv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~Tpggr~ESILmSLPp~a~W~Y~~------------- 323 (346)
T 2aex_A 257 YIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMH------------- 323 (346)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTTGGGSSSCCHHHHHHHCCSCCCCCCCC-------------
T ss_pred HHHHHHHhCCCCCCHHHHHHHHhhCCeeeEEEEEeecCccccccCCCCChhhhhhcCCCcCccccCC-------------
Confidence 999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cccccccCCCCCccccccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 014082 387 VTKSLKSWTDEGSFFFFSLFSMQNPKEGSEEWKLLDACINPKEWI 431 (431)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gs~E~~l~~~l~~PrdWv 431 (431)
+|++||+|++|+++|++|||||
T Consensus 324 -----------------------~pe~gS~Ea~l~~~~~~prdW~ 345 (346)
T 2aex_A 324 -----------------------SPSENSKEAEILEVLRHPRDWV 345 (346)
T ss_dssp -----------------------CCCTTSHHHHHHHHHHSCCCCC
T ss_pred -----------------------CCCCCCHHHHHHHHhcCccccC
Confidence 9999999999999999999997
No 2
>1txn_A Coproporphyrinogen III oxidase; structural genomics, dimer, novel fold, PSI, protein structu initiative; 1.70A {Saccharomyces cerevisiae} SCOP: d.248.1.1 PDB: 1tkl_A 1tlb_A 1tk1_A
Probab=100.00 E-value=3.7e-153 Score=1124.36 Aligned_cols=312 Identities=52% Similarity=1.019 Sum_probs=242.9
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeeccccc-CCCCCceEEEeeCCceEEeeeeEEEEEeccCCHH
Q 014082 80 ESSSSSASSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSR-PGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPE 158 (431)
Q Consensus 80 ~~~~~~~~~~r~~~e~~~~~LQ~~Ic~~lE~ldg~~~F~~D~W~R-~~GGGG~s~Vl~dG~VFEKaGVN~S~V~G~lpp~ 158 (431)
++.++++++||++|++||+.||++||++||++|+ ++|++|.|+| ++||||+||||+||+||||||||||+|||+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lQ~~Ic~~lE~~dg-~~F~~d~W~R~~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~ 81 (328)
T 1txn_A 3 APQDPRNLPIRQQMEALIRRKQAEITQGLESIDT-VKFHADTWTRGNDGGGGTSMVIQDGTTFEKGGVNVSVVYGQLSPA 81 (328)
T ss_dssp CCCCCTTSCHHHHHHHHHHHHHHHHHHHHHTTSS-SCCEECCCCCSCCCSSSCEEEEESCSSEEEEEEEEEEEEEEECHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEecceecCCCCCCeEEEEeCCcEEEecceEEEEEeccCCHH
Confidence 3456678889999999999999999999999996 8999999999 9999999999999999999999999999999999
Q ss_pred HHHHccccccCC-C----------CCCCCeEEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCC
Q 014082 159 AYRAAKAAASDE-K----------PGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLT 227 (431)
Q Consensus 159 aa~~~~~~~~~~-~----------~~~~~F~AtGISlViHPrNP~vPTvH~N~RyFe~~~~~~~~g~~~~wWFGGG~DLT 227 (431)
++++|+++++.. . .++.+|+||||||||||+||||||||||||||++. +++|.+++||||||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~~---~~~g~~~~wWFGGG~DLT 158 (328)
T 1txn_A 82 AVSAMKADHKNLRLPEDPKTGLPVTDGVKFFACGLSMVIHPVNPHAPTTHLNYRYFETW---NQDGTPQTWWFGGGADLT 158 (328)
T ss_dssp HHHTTGGGCTTCCCC----------CCEEEEEEEEEEEEEESSTTSCEEEEEEEEEEEE---CTTSSEEEEEEEEEEEEE
T ss_pred HHHhhcccccccccccccccccccCCCCCeEEEEeeEEEecCCCCCCceeeeEEEEEEe---cCCCCccceeecCCccCC
Confidence 999999966533 2 45789999999999999999999999999999993 356777789999999999
Q ss_pred CCCCChhhHHHHHHHHHHhhhcCCCCchHHHHHHhhhhcCcCcCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhh
Q 014082 228 PAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPA 307 (431)
Q Consensus 228 P~Y~~eEDa~hFH~~lK~aCD~~~~~~Yp~fKkwCDeYFyIpHR~E~RGIGGIFFDdLn~~~~e~~faFv~~vg~afl~a 307 (431)
|||+++||++|||+++|++||+||+++||+||+|||+|||||||+|+||||||||||||++++|++|+|+++||++||+|
T Consensus 159 P~y~~~eD~~hFH~~~K~aCd~~~~~~Yp~fK~wCDeYFyi~HR~E~RGvGGIFfDdl~~~~~e~~faf~~~vg~afl~a 238 (328)
T 1txn_A 159 PSYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPS 238 (328)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTHHHHHEECGGGGGGGGTCCCCCCCEEEEEEEECSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhCCCCCCHHHHHHHHHcccceeEEEEeeeccceecccc-CCceeeeeeeCCCcccccccccccccccCccccc
Q 014082 308 YIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKT-GGRIESILVSLPLTARWEYDHVSFLEHSGEYASD 386 (431)
Q Consensus 308 YlPIv~rr~~~pyte~er~wQl~RRGRYVEFNLvyDRGTkFGL~T-ggRiESILmSLPp~a~W~Y~~~~~~~~~~~~~~~ 386 (431)
|+|||+||+++||||+||+|||+||||||||||||||||+|||+| |||||||||||||+|+|+|||
T Consensus 239 Y~pIv~rr~~~~~te~er~~Ql~RRGRYVEFNLvyDRGT~FGL~tpggr~ESILmSLPp~a~W~Y~~------------- 305 (328)
T 1txn_A 239 YLTIVKRRKDMPYTKEEQQWQAIRRGRYVEFNLIYDRGTQFGLRTPGSRVESILMSLPEHASWLYNH------------- 305 (328)
T ss_dssp HHHHHHTTTTSCCCHHHHHHHHHHHTHHHHHC------------------------------------------------
T ss_pred HHHHHHHhCCCCCCHHHHHHHHhcccceEEEEeeeecCchhhCCCCCCCceeeeecCCCCCccccCC-------------
Confidence 999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cccccccCCCCCccccccccccCCCCCCCHHHHHHHHhcCCCCCC
Q 014082 387 VTKSLKSWTDEGSFFFFSLFSMQNPKEGSEEWKLLDACINPKEWI 431 (431)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gs~E~~l~~~l~~PrdWv 431 (431)
+|++||+|++|+++|++|||||
T Consensus 306 -----------------------~pe~gS~Ea~l~~~~~~prdW~ 327 (328)
T 1txn_A 306 -----------------------HPAPGSREAKLLEVTTKPREWV 327 (328)
T ss_dssp ---------------------------------------------
T ss_pred -----------------------CCCCcCHHHHHHHHhcCcccCC
Confidence 9999999999999999999997
No 3
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=100.00 E-value=1.2e-151 Score=1105.92 Aligned_cols=300 Identities=47% Similarity=0.907 Sum_probs=280.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEEEeccCCHHHHHHcccc
Q 014082 87 SSVRARFEKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSVVYGVMPPEAYRAAKAA 166 (431)
Q Consensus 87 ~~~r~~~e~~~~~LQ~~Ic~~lE~ldg~~~F~~D~W~R~~GGGG~s~Vl~dG~VFEKaGVN~S~V~G~lpp~aa~~~~~~ 166 (431)
.-.++++++||+.||++||++||++|++++|++|.|+|++||||+||||+||+||||||||||+|+|+++|+++++++++
T Consensus 10 ~~~~~~~~~~~~~lQ~~Ic~~lE~~dg~~~F~~d~W~R~~GGGG~s~Vl~~G~VFEKaGVN~S~V~G~~~p~~~~~~~p~ 89 (309)
T 1vju_A 10 SLAVEAVKDFLLKLQDDICEALEAEDGQATFVEDKWTREGGGGGRTRVMVDGAVIEKGGVNFSHVYGKGLPMSSTERHPD 89 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEETTTEEEEEEEEESCSSEEEEEEEEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEecCccCCCCCCeEEEEeCCcEEEecceEEEEEeCCCChHHHHHhccc
Confidence 45789999999999999999999999888999999999999999999999999999999999999999666667778775
Q ss_pred ccCCCCCCCCeEEeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHHHh
Q 014082 167 ASDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSA 246 (431)
Q Consensus 167 ~~~~~~~~~~F~AtGISlViHPrNP~vPTvH~N~RyFe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eEDa~hFH~~lK~a 246 (431)
.+ +.+|+||||||||||+||||||||||||||++ +++|..++||||||+||||||+++||++|||+++|++
T Consensus 90 ~~-----~~~F~A~GvSlViHP~NP~vPTvH~N~R~f~~----~~~g~~~~wWFGGG~DLTP~y~~~eD~~hFH~~~k~a 160 (309)
T 1vju_A 90 IA-----GCNFEAMGVSLVIHPKNPHVPTSHANVRLFVA----EREGKEPVWWFGGGFDLTPYYAVEEDCRDFHQVAQDL 160 (309)
T ss_dssp CT-----TCEEEEEEEEEEEEESSTTSCEEEEEEEEEEE----EETTEEEEEEEEEEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred cC-----CCCeEEEEEeEEEecCCCCCCceeeeEEEEEe----ecCCCCcceeecCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 43 56999999999999999999999999999999 3456667899999999999999999999999999999
Q ss_pred hhcCCCCchHHHHHHhhhhcCcCcCCCcCccceeeccCCCCcChhHHHHHHHHHHhhhhhhcHHHHHHhCCCCCCHHHHH
Q 014082 247 CDKFDPTFYPRFKKWCDDYFYIKHRGERRGLGGLFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKA 326 (431)
Q Consensus 247 CD~~~~~~Yp~fKkwCDeYFyIpHR~E~RGIGGIFFDdLn~~~~e~~faFv~~vg~afl~aYlPIv~rr~~~pyte~er~ 326 (431)
||+||+++||+||+|||+|||||||+|+||||||||||||++++|++|+|+++||++||+||+|||+||+++||||+||+
T Consensus 161 Cd~~~~~~Yp~fK~wCDeYFyl~HR~E~RGVGGIFfDdl~~~~~e~~faf~~~vg~afl~aY~pIv~rr~~~~~te~er~ 240 (309)
T 1vju_A 161 CKPFGADVYARFKGWCDEYFFIPYRNEARGIGGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVE 240 (309)
T ss_dssp HGGGCTTHHHHHHHHHHHHSEEGGGTEESSSEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HhhcCchhhHHHHHHHHHhcchhhcCCCCCCCeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccceeEEEEeeeccceeccccCCceeeeeeeCCCcccccccccccccccCccccccccccccCCCCCcccccccc
Q 014082 327 WQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHVSFLEHSGEYASDVTKSLKSWTDEGSFFFFSLF 406 (431)
Q Consensus 327 wQl~RRGRYVEFNLvyDRGTkFGL~TggRiESILmSLPp~a~W~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (431)
|||+||||||||||||||||+||||||||||||||||||+|+|+|||
T Consensus 241 ~Ql~RRGRYVEFNLvyDRGT~FGL~tggr~ESILmSLPp~a~W~Y~~--------------------------------- 287 (309)
T 1vju_A 241 FQEFRRGRYAEFNLVIDRGTKFGLQSGGRTESILISLPPRARWGYNW--------------------------------- 287 (309)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTCCHHHHGGGSCSCCCCCTTC---------------------------------
T ss_pred HHHhhccceEEEEeeeecCchhhccCCCcceeeeecCCccCeeccCC---------------------------------
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHhcCCCCCC
Q 014082 407 SMQNPKEGSEEWKLLDACINPKEWI 431 (431)
Q Consensus 407 ~~~~p~~gs~E~~l~~~l~~PrdWv 431 (431)
+|++||+|++|+++|++|||||
T Consensus 288 ---~pe~gS~Ea~L~~~~~~prdW~ 309 (309)
T 1vju_A 288 ---QPEPGTPEARLTEYFLTKRQWV 309 (309)
T ss_dssp ---CCCTTSHHHHHHHTHHHHCCCC
T ss_pred ---CCCCCCHHHHHHHHhcCCcCCC
Confidence 9999999999999999999997
No 4
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=39.53 E-value=76 Score=26.85 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=33.0
Q ss_pred CCCCceEEEee------CCceEEeeeeEEEEEeccCCHHHHHHccccccCCCCCCCCeEE---eeeEEEecCCCCCCCce
Q 014082 126 GGGGGISRVLQ------DGAIWEKAGVNVSVVYGVMPPEAYRAAKAAASDEKPGPIPFFA---AGISSVLHPKNPFAPTL 196 (431)
Q Consensus 126 ~GGGG~s~Vl~------dG~VFEKaGVN~S~V~G~lpp~aa~~~~~~~~~~~~~~~~F~A---tGISlViHPrNP~vPTv 196 (431)
+|| |.+..|. +..|||..||.| -+.+..+..+.+. ...|.- .|-..++. ||++.+.
T Consensus 55 ~gG-G~~Y~l~l~~~~~~D~v~e~~Gv~v-----~VD~~s~~~L~G~-------~IDy~~~~l~g~gF~~~--NPna~~~ 119 (125)
T 2k4z_A 55 PDG-SIDYRMGFDDLTEDDIRLTSEGVEI-----VIAPDYVSLLDQT-------TLDYVELEPGQFHFIFL--NPRDPTY 119 (125)
T ss_dssp TTS-CEEEEEEEECCCSSSCEEECSSCEE-----ECCTTTHHHHTTE-------EEEEEEEETTEEEEEEE--CSSSCSS
T ss_pred CCC-CEEEEEEecCCCCCceEEEECCEEE-----EEeHHHHHhhCCC-------EEEEEeCCCCcCeEEEC--CCCCCcc
Confidence 445 8887764 457999999877 3444444444331 223433 34556664 9988653
No 5
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=31.44 E-value=32 Score=34.46 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=58.2
Q ss_pred EeeeEEEecCCCCCCCceeceeeEEEecCCCCCCCCCCcceecccCCCCCCCCChhhHHHHHHHHHHhhhcCCCCchHHH
Q 014082 179 AAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRF 258 (431)
Q Consensus 179 AtGISlViHPrNP~vPTvH~N~RyFe~~~~~~~~g~~~~wWFGGG~DLTP~Y~~eEDa~hFH~~lK~aCD~~~~~~Yp~f 258 (431)
..||.|+|||.||-.|-.=+| |+..+.. ..-+|=--+| .|+...-=|+-|+|.. -+.+...-+
T Consensus 211 e~GV~Laiep~dpp~~~~Gl~-riv~t~e--------~~~rll~~vd-sp~~gl~lDtG~l~~~-------~~~D~~~~i 273 (386)
T 3bdk_A 211 EAGVKMAIHPDDPPYGIFGLP-RIITGQE--------AVERFLNLYD-SEHNGITMCVGSYASD-------PKNDVLAMT 273 (386)
T ss_dssp SSSCEEEECCCSSSSCCTTCC-CCCCSHH--------HHHHHHHTTC-STTEEEEEEHHHHHTS-------TTCCHHHHH
T ss_pred HhCCEEEEeeCCcccccccCC-ceeCCHH--------HHHHHHHhcC-CCCEEEEEccCchhhc-------CCCCHHHHH
Confidence 469999999999976622122 3322200 0001100000 1112222244444421 134667788
Q ss_pred HHHh--hhhcCcCcCCCcCccceeeccCCC-----CcChhHHHHHHHHHH
Q 014082 259 KKWC--DDYFYIKHRGERRGLGGLFFDDLN-----DYDQEMLLSFATECA 301 (431)
Q Consensus 259 KkwC--DeYFyIpHR~E~RGIGGIFFDdLn-----~~~~e~~faFv~~vg 301 (431)
++.. |+=.++-=|+-.|++.| |.+..- .-|+...++-.+++|
T Consensus 274 ~~~~~~~RI~hvHlkDv~~~~~g-f~e~~~g~g~G~vD~~~i~~aL~~~g 322 (386)
T 3bdk_A 274 EYALKRNRINFMHTRNVTAGAWG-FQETAHLSQAGDIDMNAVVKLLVDYD 322 (386)
T ss_dssp HHHHHTTCEEEEECCCEEEETTE-EEECCSSGGGSSCCHHHHHHHHHHTT
T ss_pred HHhCCcCeEEEEeecCCCCCCCC-ccccCCCcCCCCcCHHHHHHHHHHhC
Confidence 8888 88888777777777777 665431 236788888777776
No 6
>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA polymerase, single subunit polymerase fold, fingers, PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A 2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A
Probab=24.26 E-value=28 Score=39.00 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCeeecccccCCCCCceEEEeeCCceEEeeeeEEEE
Q 014082 94 EKMIRDAQDSVCQAIEKTDGGGKFKEDVWSRPGGGGGISRVLQDGAIWEKAGVNVSV 150 (431)
Q Consensus 94 e~~~~~LQ~~Ic~~lE~ldg~~~F~~D~W~R~~GGGG~s~Vl~dG~VFEKaGVN~S~ 150 (431)
++++..+|+.|.+.-.++.-+ -+. -..--|=.=--|-+.+|++|||||||+=.
T Consensus 645 ~q~i~~vs~~vk~~YsrmNak--VKA--LaS~tGlEmAKRyIagGkIFfRagIniln 697 (1095)
T 2r7r_A 645 KQMIQDVSNDVRETYARMNAK--VKA--LVSTVGIEIAKRYIAGGKIFFRAGINLLN 697 (1095)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC--CEE--EEESSCEECSSCEEETTEEECCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhhHH--HHH--HHhhhhHHHHHHHhhcccceecccccccc
Confidence 456788999999988888632 211 11111111112556689999999999843
No 7
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=22.60 E-value=50 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=20.0
Q ss_pred eEEEEeeeccceeccccCCceeee
Q 014082 336 VEFNLVYDRGTTFGLKTGGRIESI 359 (431)
Q Consensus 336 VEFNLvyDRGTkFGL~TggRiESI 359 (431)
+|.|.+.|||..|=..++|.||..
T Consensus 11 ~~l~V~rdR~~Ly~~~~dG~I~N~ 34 (118)
T 2r39_A 11 AGMSVIRDRNQLFRVNSAGEVENT 34 (118)
T ss_dssp EEEEEEECSSCCCCC--CCSEEEE
T ss_pred cEEEEEecCCceEEEcCCCeEEEE
Confidence 799999999999998889988874
No 8
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=18.33 E-value=62 Score=27.85 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=14.7
Q ss_pred cCCCCCCCCC------------------hhhHHHHHHHHH
Q 014082 223 GTDLTPAYIF------------------EEDVKHFHSTQK 244 (431)
Q Consensus 223 G~DLTP~Y~~------------------eEDa~hFH~~lK 244 (431)
|++.||-|+. +||+.+|..-.+
T Consensus 56 Gt~mTPNYvdn~s~sVspWC~C~~SGN~~eeCe~fl~~Ft 95 (108)
T 1q8d_A 56 GTVMTPNYVDSSSLSVAPWCDCSNSGNDLEDCLKFLNFFK 95 (108)
T ss_dssp TSTTCCC--------CCCSCBCTTCGGGHHHHHHHHHHHH
T ss_pred ccccCcccccCCCceeeCCcccCCCCCCHHHHHHHHHHHc
Confidence 8999999976 677777776543
No 9
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=18.32 E-value=66 Score=27.01 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHhhhcCCCCchHHHHHHhhhh
Q 014082 242 TQKSACDKFDPTFYPRFKKWCDDY 265 (431)
Q Consensus 242 ~lK~aCD~~~~~~Yp~fKkwCDeY 265 (431)
++.+||.+|+- -...|..|+..|
T Consensus 52 S~~EAa~ry~I-s~~ei~~W~r~y 74 (101)
T 2oa4_A 52 TLAEAKQTYGL-SDEEFNSWVSAL 74 (101)
T ss_dssp CHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHhCC-CHHHHHHHHHHH
Confidence 47899999999 689999999998
No 10
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=15.81 E-value=36 Score=26.20 Aligned_cols=12 Identities=50% Similarity=0.756 Sum_probs=10.1
Q ss_pred eecccCCCCCCC
Q 014082 219 WFGGGTDLTPAY 230 (431)
Q Consensus 219 WFGGG~DLTP~Y 230 (431)
-||||-|||=.=
T Consensus 13 ~~~~~~~~~~tg 24 (60)
T 1pzr_A 13 RFGGGEDLLMSG 24 (60)
T ss_dssp HHHCCCSSCCCC
T ss_pred HhcCCchHHhcC
Confidence 599999999764
Done!