BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014083
(431 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 185/437 (42%), Gaps = 52/437 (11%)
Query: 12 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 65
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 66 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 125
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 126 DPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAADAIKAGLDLDCGP-- 182
D +L + + Q DG++VSD +N + + E A AI AG+D+ P
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGVDVIMVPEH 325
Query: 183 FLAIH--TEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSAQPFGNLGPRDVCTP 239
F A + T V+ G++ E +N A+ + ++R G+F +PSA+P P+ +
Sbjct: 326 FEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLGAA 384
Query: 240 XXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 299
+VLLKN+ LP+ VA G N+ I AG G++
Sbjct: 385 EHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA------INMQAG---GWSV 435
Query: 300 PLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQA-------DATVLVMGLDQSIEA 352
QG A ++ ++ D ++V+G + A
Sbjct: 436 SWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIG--EEPYA 493
Query: 353 EFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSFAKNDPRIGAILW 407
E+ LL Q E +A KA PVV V + G P+ V+ N W
Sbjct: 494 EWFGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAW 551
Query: 408 VGYPGQAGGAAIADVLF 424
+ PG + G +ADVL
Sbjct: 552 L--PG-SEGEGVADVLL 565
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 185/437 (42%), Gaps = 52/437 (11%)
Query: 12 WS--PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRL----KVAACCKH 65
WS P V + RD RWGR E+ EDP L +YA V G+QG+ G+ A KH
Sbjct: 157 WSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGDVGADFLKGSNRIATAKH 216
Query: 66 YTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCA 125
+ D GVDR N + ++ L D ++ + + + +G V SVM S+N NGK
Sbjct: 217 FVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHG 272
Query: 126 DPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPE-EAAADAIKAGLDLDCGP-- 182
D +L + + Q DG++VSD +N + + E A AI AG+D+ P
Sbjct: 273 DKHLLTDVLKNQLGFDGFVVSD-------WNAHKFVEGCDLEQCAQAINAGVDVIMVPEH 325
Query: 183 FLAIH--TEGAVRGGLLREEDVNLALAYTITVQMRLGMF-DGEPSAQPFGNLGPRDVCTP 239
F A + T V+ G++ E +N A+ + ++R G+F +PSA+P P+ +
Sbjct: 326 FEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSARPESQ-HPQWLGAA 384
Query: 240 XXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTT 299
+VLLKN+ LP+ VA G N+ I AG G++
Sbjct: 385 EHRTLAREAVRKSLVLLKNNESILPIKASSRILVAGKGANA------INMQAG---GWSV 435
Query: 300 PLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQA-------DATVLVMGLDQSIEA 352
QG A ++ ++ D ++V+G + A
Sbjct: 436 SWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIG--EEPYA 493
Query: 353 EFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGGPVDVSFAKNDPRIGAILW 407
E+ LL Q E +A KA PVV V + G P+ V+ N W
Sbjct: 494 EWFGDIELL--EFQHETKHALALLKQLKADNIPVVTVFLSGRPLWVNKELNASDAFVAAW 551
Query: 408 VGYPGQAGGAAIADVLF 424
+ PG + G +ADVL
Sbjct: 552 L--PG-SEGEGVADVLL 565
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 108 bits (271), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 134/312 (42%), Gaps = 49/312 (15%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P +N R P GR ET EDP+++ + A + ++G+QG + KH+ A + +N
Sbjct: 151 PMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQG-----AGLMTTAKHFAANNQEN 205
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
+R+ NA V +Q L + F+A G AS MC+YN +NGKP+C + ++L N
Sbjct: 206 ----NRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGLNGKPSCGNDELLNNV 260
Query: 134 IHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG------------ 181
+ QW G+++SD + TP DAI GLD + G
Sbjct: 261 LRTQWGFQGWVMSD------------WLATP---GTDAITKGLDQEMGVELPGDVPKGEP 305
Query: 182 ----PFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVC 237
F + AV G + E V + + + G+ P+ +P RD
Sbjct: 306 SPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRP-----ERDKA 360
Query: 238 TPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNS-DVTVTMIGNYAGVACG 296
G VLL+N + LPL+ ++AVIGP + D VT +G+ V
Sbjct: 361 --GAQAVSRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDS 418
Query: 297 YTTPLQGISRYA 308
PL I A
Sbjct: 419 AAAPLDTIKARA 430
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 392
+AR+A T +V D E +DR L LPG Q +L+S VA A+ +V VL G V
Sbjct: 562 SARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPNTIV-VLNTGSSVL 617
Query: 393 VSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANP 429
+ + + A+L + YPGQAG A A +L+G NP
Sbjct: 618 MPWLS---KTRAVLDMWYPGQAGAEATAALLYGDVNP 651
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 119/446 (26%), Positives = 182/446 (40%), Gaps = 76/446 (17%)
Query: 20 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 79
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 119 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 169
Query: 80 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 139
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 170 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 228
Query: 140 LDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD-----CGPFL--AIHTEGAV 192
GY+++D +N QH T + D G D + GP L A+++ V
Sbjct: 229 FPGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSN-QV 280
Query: 193 RGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXG 252
+ + + A+ +T Q + G S GN G
Sbjct: 281 PTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNVQGN----------HKTNVRAIARDG 330
Query: 253 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVACG 296
IVLLKN A LPL + ++AV+G + +IGN+A G+ G
Sbjct: 331 IVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWG 383
Query: 297 --------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ 348
+ P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 384 SGAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADS 439
Query: 349 -----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIG 403
++E DR L LV VA A+ V++V+ G + + P++
Sbjct: 440 GEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVK 498
Query: 404 AILWVGYPGQAGGAAIADVLFGRANP 429
A++W G P Q G A+ DVL+G +P
Sbjct: 499 AVVWAGLPSQESGNALVDVLWGDVSP 524
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 119/446 (26%), Positives = 182/446 (40%), Gaps = 76/446 (17%)
Query: 20 RDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDR 79
+ P+ GR E G DP LTG + G+Q + V A KHY + N ++R
Sbjct: 120 KTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ-----SVGVQATAKHY----ILNEQELNR 170
Query: 80 YHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWR 139
++ + L + Y PF A V+ VASVMCSYN+VN C D L+ + Q
Sbjct: 171 ETISSNPDDRTLHELYTWPF-ADAVQANVASVMCSYNKVNTTWACEDQYTLQTVLKDQLG 229
Query: 140 LDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD-----CGPFL--AIHTEGAV 192
GY+++D +N QH T + D G D + GP L A+++ V
Sbjct: 230 FPGYVMTD-------WNAQHTTVQSANSGLDMSMPGTDFNGNNRLWGPALTNAVNSN-QV 281
Query: 193 RGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXG 252
+ + + A+ +T Q + G S GN G
Sbjct: 282 PTSRVDDMVTRILAAWYLTGQDQAGYPSFNISRNVQGN----------HKTNVRAIARDG 331
Query: 253 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVACG 296
IVLLKN A LPL + ++AV+G + +IGN+A G+ G
Sbjct: 332 IVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGWG 384
Query: 297 --------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQ 348
+ P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 385 SGAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITADS 440
Query: 349 -----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIG 403
++E DR L LV VA A+ V++V+ G + + P++
Sbjct: 441 GEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQVK 499
Query: 404 AILWVGYPGQAGGAAIADVLFGRANP 429
A++W G P Q G A+ DVL+G +P
Sbjct: 500 AVVWAGLPSQESGNALVDVLWGDVSP 525
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 194/467 (41%), Gaps = 94/467 (20%)
Query: 13 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC-GPFLAIHTE-- 189
+ +W +G+++SD + + + +KAG DL G ++TE
Sbjct: 228 VLREEWGFEGFVMSDWYA--------------GDNPVEQLKAGNDLIMPGKAYQVNTERR 273
Query: 190 -------GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXX 242
A++ G L EE ++ V+ L + PS + + D+
Sbjct: 274 DEIEEIMEALKEGKLSEEVLDEC------VRNILKVLVNAPSFKNYRYSNKPDL--EKHA 325
Query: 243 XXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP-- 300
G+VLL+N LPLS + +A+ G T+ G G T P
Sbjct: 326 KVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRY 377
Query: 301 ----LQGISR---------------YAKTIHQAGCFGVACNG----------NQLIGAAE 331
L+GI Y K + + + + + E
Sbjct: 378 AISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKE 437
Query: 332 V--AARQADATVLVMGLDQSIEAEFIDRA----GLLLPGRQQELVSRVAKA--SRGPVVL 383
+ A++ D V+V+ I E DR L + +L+ V++ +G V+
Sbjct: 438 IHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 384 VLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANP 429
VL+ G PV+V ++ + IL V GQ G +ADVL GR NP
Sbjct: 495 VLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINP 539
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 145/341 (42%), Gaps = 48/341 (14%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P N+ R P GRG E+ EDP L G +S V+G+QG +AA KH+ DL++
Sbjct: 101 PTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEG-----IAATVKHFVCNDLED 155
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
R+ N+ VS++ L + Y PF+ V +M +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDI 211
Query: 134 IHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVR 193
+ +W+ DG ++SD + T YT A AIK GLD++ T V
Sbjct: 212 LRDEWKWDGMLMSDW------FGT--YT------TAAAIKNGLDIEFPGPTRWRTRALVS 257
Query: 194 GGL-----LREEDVN-------LALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXX 241
L + EDV+ + + + + G+ + P + D+
Sbjct: 258 HSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRK-- 315
Query: 242 XXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGY-TTP 300
IVLLKN LPL + + VIGPN+ + G A + Y +P
Sbjct: 316 ------IAADSIVLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSP 367
Query: 301 LQGI-SRYAKTI-HQAGCFGVACNGNQLIGAAEVAARQADA 339
+GI ++ K + + G + G + AA+ ADA
Sbjct: 368 YEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADA 408
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 313 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 372
QAG + ++ AAE+AA+ D VL++GL+ E E DR + LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 373 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANP 429
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVP 662
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 121/467 (25%), Positives = 193/467 (41%), Gaps = 94/467 (20%)
Query: 13 SPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLD 72
+P +NI R+P GR E EDPVL+G+ A+S+V+G+Q V AC KH+ A
Sbjct: 117 APAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQG-----VGACIKHFVA---- 167
Query: 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKN 132
N +R + VS++ L + Y F+ V + K SVM +YN++NGK + +LK
Sbjct: 168 NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKK 227
Query: 133 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDC-GPFLAIHTE-- 189
+ +W +G+++S + P + +KAG DL G ++TE
Sbjct: 228 VLREEWGFEGFVMS----------AWYAGDNP----VEQLKAGNDLIMPGKAYQVNTERR 273
Query: 190 -------GAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXXX 242
A++ G L EE ++ V+ L + PS + + D+
Sbjct: 274 DEIEEIMEALKEGKLSEEVLDEC------VRNILKVLVNAPSFKNYRYSNKPDL--EKHA 325
Query: 243 XXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTP-- 300
G+VLL+N LPLS + +A+ G T+ G G T P
Sbjct: 326 KVAYEAGAEGVVLLRNE-EALPLS--ENSKIALFGTGQIETIK-----GGTGSGDTHPRY 377
Query: 301 ----LQGISR---------------YAKTIHQAGCFGVACNG----------NQLIGAAE 331
L+GI Y K + + + + + E
Sbjct: 378 AISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLSEKE 437
Query: 332 V--AARQADATVLVMGLDQSIEAEFIDRA----GLLLPGRQQELVSRVAKA--SRGPVVL 383
+ A++ D V+V+ I E DR L + +L+ V++ +G V+
Sbjct: 438 IHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 384 VLM-CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANP 429
VL+ G PV+V ++ + IL V GQ G +ADVL GR NP
Sbjct: 495 VLLNIGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINP 539
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 140/341 (41%), Gaps = 48/341 (14%)
Query: 14 PNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDN 73
P N R P GRG E+ EDP L G +S V+G QG +AA KH+ DL++
Sbjct: 101 PTTNXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQGEG-----IAATVKHFVCNDLED 155
Query: 74 WNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNT 133
R+ N+ VS++ L + Y PF+ V + +YN+VNG+ +L +
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDI 211
Query: 134 IHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVR 193
+ +W+ DG + SD + T YT A AIK GLD++ T V
Sbjct: 212 LRDEWKWDGXLXSDW------FGT--YT------TAAAIKNGLDIEFPGPTRWRTRALVS 257
Query: 194 GGL-----LREEDVN-------LALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPXX 241
L + EDV+ + + + + G+ + P + D+
Sbjct: 258 HSLNSREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIVENGPESTSNNTKETSDLLRK-- 315
Query: 242 XXXXXXXXXXGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGY-TTP 300
IVLLKN LPL + + VIGPN+ + G A Y +P
Sbjct: 316 ------IAADSIVLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASXNSYYVVSP 367
Query: 301 LQGI-SRYAKTI-HQAGCFGVACNGNQLIGAAEVAARQADA 339
+GI ++ K + + G + G + AA+ ADA
Sbjct: 368 YEGIVNKLGKEVDYTVGAYSHKSIGGLAESSLIDAAKPADA 408
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 313 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 372
QAG + ++ AAE+AA+ D VL++GL+ E E DR LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRA 609
Query: 373 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANP 429
V KA+ V+V G PV+ + ++ A++ Y G G AIADVL+G P
Sbjct: 610 VLKANPN-TVIVNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVP 662
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 161/379 (42%), Gaps = 66/379 (17%)
Query: 8 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 55
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 56 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 115
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 116 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG 175
+ NG A+ D++ + + G+++SD + + + T + +I AG
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI--TTPAGSDYSYSVKASILAG 311
Query: 176 LDLDCGP-----FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEPS-AQ 226
LD+ P F++I T G V GG++ ++ A+ + V+ +G+F+ +P+ A+
Sbjct: 312 LDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE 370
Query: 227 PFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN--SARTLPLSTLRHHTVAVIGPNSDVTV 284
G RD+ +VLLKN ++ PL L P +
Sbjct: 371 QLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPL---------PKKAPKI 413
Query: 285 TMIGNYA---GVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATV 341
+ G++A G CG TI G G G ++ A + A + V
Sbjct: 414 LVAGSHADNLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVV 462
Query: 342 LVMGLDQSIEAEFIDRAGL 360
++ +AEF+ G
Sbjct: 463 FA----ENPDAEFVKSGGF 477
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/379 (24%), Positives = 161/379 (42%), Gaps = 66/379 (17%)
Query: 8 GLTY-WSPNVNIFRDPRWGRGQETPGED-----------PVLTGKYAASYVRGLQGNTGS 55
G+ Y ++P + + RDPRWGR E+ ED P L G + G+ G
Sbjct: 139 GIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGK 198
Query: 56 RLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSY 115
KVAAC KH+ D +G++ N ++++ L + + +K + +G V++VM SY
Sbjct: 199 N-KVAACAKHFVG-DGGTVDGINEN--NTIINREGLMNIHMPAYKNAMDKG-VSTVMISY 253
Query: 116 NQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG 175
+ NG A+ D++ + + G+++SD + + + T + +I AG
Sbjct: 254 SSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI--TTPAGSDYSYSVKASILAG 311
Query: 176 LDLDCGP-----FLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFD---GEPS-AQ 226
LD+ P F++I T G V GG++ ++ A+ + V+ +G+F+ +P+ A+
Sbjct: 312 LDMIMVPNKYQQFISILT-GHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAE 370
Query: 227 PFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKN--SARTLPLSTLRHHTVAVIGPNSDVTV 284
G RD+ +VLLKN ++ PL L P +
Sbjct: 371 QLGKQEHRDLA--------REAARKSLVLLKNGKTSTDAPLLPL---------PKKAPKI 413
Query: 285 TMIGNYA---GVACGYTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATV 341
+ G++A G CG TI G G G ++ A + A + V
Sbjct: 414 LVAGSHADNLGYQCG-----------GWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVV 462
Query: 342 LVMGLDQSIEAEFIDRAGL 360
++ +AEF+ G
Sbjct: 463 FA----ENPDAEFVKSGGF 477
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 48 GLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQ--DLEDTYNVPFKACVVE 105
L G+T R VA C KH+ + + D + RVSK +L+ PF+A + E
Sbjct: 164 ALAGHT--REGVAPCAKHFPGHGDTHQ---DSHLALPRVSKSRAELDAGELAPFRALLPE 218
Query: 106 GK-VASVMCSYNQVNGK-PTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163
+ + Y+ ++ + P P IL + +W DG IV+ DS G +Y R
Sbjct: 219 TPAIXTAHIVYDALDAEHPATLSPRILTGLLREEWGYDGVIVT--DSXGXQAIDANYGRG 276
Query: 164 PEEAAADAIKAGLDL 178
EAA A++AG DL
Sbjct: 277 --EAAVRALRAGADL 289
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 128/313 (40%), Gaps = 51/313 (16%)
Query: 10 TYWSPNVNIFRDPRWGR-GQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTA 68
T +SP V+I +P G + + LT + ++GLQ R +A+ KH+
Sbjct: 171 TDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ-----RQDIASALKHFPG 225
Query: 69 Y---DLDNWNGVDRY-HFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG---- 120
+ D+D+ G+ H R+ + +L PF+ + G VM ++ Q
Sbjct: 226 HGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTAHVQFPAFDDT 279
Query: 121 --KPTCADPDIL------KNTIHGQWR----LDGYIVSDCDSVGVLYNTQHYTRTPEEAA 168
K DIL K + G R +G IV+D ++ + + H+ + EEA
Sbjct: 280 TYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIAD--HFGQ--EEAV 335
Query: 169 ADAIKAGLDLDCGP--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMR 215
A+KAG+D+ P ++ E AV+ G + E+ +N ++ I+++++
Sbjct: 336 VMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIK 395
Query: 216 LGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTV 273
GM+ S + + V + + +LKN TLP + +
Sbjct: 396 RGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRI 455
Query: 274 AVIGPNSDVTVTM 286
++ P + T ++
Sbjct: 456 LIVAPYEEQTASI 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 128/313 (40%), Gaps = 51/313 (16%)
Query: 10 TYWSPNVNIFRDPRWGR-GQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTA 68
T +SP V+I +P G + + LT + ++GLQ R +A+ KH+
Sbjct: 175 TDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ-----RQDIASALKHFPG 229
Query: 69 Y---DLDNWNGVDRY-HFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG---- 120
+ D+D+ G+ H R+ + +L PF+ + G VM ++ Q
Sbjct: 230 HGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTAHVQFPAFDDT 283
Query: 121 --KPTCADPDIL------KNTIHGQWR----LDGYIVSDCDSVGVLYNTQHYTRTPEEAA 168
K DIL K + G R +G IV++ ++ + + H+ + EEA
Sbjct: 284 TYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAV 339
Query: 169 ADAIKAGLDLDCGP--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMR 215
A+KAG+D+ P ++ E AV+ G + E+ +N ++ I+++++
Sbjct: 340 VMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIK 399
Query: 216 LGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTV 273
GM+ S + + V + + +LKN TLP + +
Sbjct: 400 RGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRI 459
Query: 274 AVIGPNSDVTVTM 286
++ P + T ++
Sbjct: 460 LIVAPYEEQTASI 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/313 (21%), Positives = 128/313 (40%), Gaps = 51/313 (16%)
Query: 10 TYWSPNVNIFRDPRWGR-GQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTA 68
T +SP V+I +P G + + LT + ++GLQ R +A+ KH+
Sbjct: 145 TDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQ-----RQDIASALKHFPG 199
Query: 69 Y---DLDNWNGVDRY-HFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNG---- 120
+ D+D+ G+ H R+ + +L PF+ + G VM ++ Q
Sbjct: 200 HGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTAHVQFPAFDDT 253
Query: 121 --KPTCADPDIL------KNTIHGQWR----LDGYIVSDCDSVGVLYNTQHYTRTPEEAA 168
K DIL K + G R +G IV++ ++ + + H+ + EEA
Sbjct: 254 TYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIAD--HFGQ--EEAV 309
Query: 169 ADAIKAGLDLDCGP--FLAIHTEG-----------AVRGGLLREEDVNLALAYTITVQMR 215
A+KAG+D+ P ++ E AV+ G + E+ +N ++ I+++++
Sbjct: 310 VMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIK 369
Query: 216 LGMFDGE--PSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHTV 273
GM+ S + + V + + +LKN TLP + +
Sbjct: 370 RGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRI 429
Query: 274 AVIGPNSDVTVTM 286
++ P + T ++
Sbjct: 430 LIVAPYEEQTASI 442
>pdb|3P11|A Chain A, Anti-EgfrHER3 FAB DL11 IN COMPLEX WITH DOMAINS I-Iii Of
The Her3 Extracellular Region
Length = 522
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 47 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 103
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 104 VEGKVASVMCS 114
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
>pdb|1M6B|A Chain A, Structure Of The Her3 (Erbb3) Extracellular Domain
pdb|1M6B|B Chain B, Structure Of The Her3 (Erbb3) Extracellular Domain
Length = 621
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 47 RGLQGNTGSRLKVAA---CCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACV 103
R L+ + R+ ++A C H++ NW V R +++ L+ +N P + CV
Sbjct: 425 RSLKEISAGRIYISANRQLCYHHSL----NWTKVLR-----GPTEERLDIKHNRPRRDCV 475
Query: 104 VEGKVASVMCS 114
EGKV +CS
Sbjct: 476 AEGKVCDPLCS 486
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,588,915
Number of Sequences: 62578
Number of extensions: 564501
Number of successful extensions: 1071
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1025
Number of HSP's gapped (non-prelim): 26
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)