Query 014083
Match_columns 431
No_of_seqs 200 out of 1540
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 01:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 5.6E-98 1E-102 801.8 44.5 428 2-430 144-581 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 6.4E-90 1.4E-94 741.9 44.0 414 6-430 148-592 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 7.4E-58 1.6E-62 456.8 20.1 256 6-291 111-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 1.1E-52 2.5E-57 409.1 14.7 194 6-212 100-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 1.2E-44 2.6E-49 355.2 17.9 188 6-216 112-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 99.9 7.5E-27 1.6E-31 219.1 13.6 169 253-430 1-181 (227)
7 COG0486 ThdF Predicted GTPase 88.0 14 0.00031 37.9 14.0 227 102-387 60-333 (454)
8 COG1160 Predicted GTPases [Gen 78.8 6.2 0.00014 40.3 7.0 47 328-387 75-121 (444)
9 PF06858 NOG1: Nucleolar GTP-b 72.5 14 0.00031 26.5 5.5 42 336-386 13-55 (58)
10 TIGR01759 MalateDH-SF1 malate 62.7 6.6 0.00014 38.8 3.0 59 332-394 75-135 (323)
11 PRK13533 7-cyano-7-deazaguanin 61.1 14 0.00029 38.8 5.1 48 133-181 74-121 (487)
12 PRK00286 xseA exodeoxyribonucl 57.8 38 0.00082 34.9 7.7 49 325-383 179-229 (438)
13 TIGR01756 LDH_protist lactate 57.0 7.8 0.00017 38.1 2.4 57 332-394 56-116 (313)
14 TIGR01334 modD putative molybd 54.8 1.3E+02 0.0027 29.1 10.2 30 38-68 105-134 (277)
15 cd00938 HisRS_RNA HisRS_RNA bi 54.7 31 0.00066 23.5 4.2 29 189-217 14-42 (45)
16 PLN00135 malate dehydrogenase 54.0 11 0.00024 37.0 2.9 57 332-394 54-114 (309)
17 PRK05442 malate dehydrogenase; 53.5 12 0.00027 37.0 3.2 57 332-394 76-136 (326)
18 cd00704 MDH Malate dehydrogena 53.2 12 0.00025 37.1 2.9 57 332-394 72-132 (323)
19 TIGR00237 xseA exodeoxyribonuc 51.0 66 0.0014 33.2 8.1 49 325-383 173-224 (432)
20 PF10087 DUF2325: Uncharacteri 50.6 49 0.0011 26.2 5.7 41 329-384 41-81 (97)
21 cd01338 MDH_choloroplast_like 50.0 14 0.0003 36.5 2.9 57 332-394 74-134 (322)
22 TIGR01757 Malate-DH_plant mala 48.6 13 0.00028 37.7 2.5 57 332-394 116-176 (387)
23 cd01857 HSR1_MMR1 HSR1/MMR1. 48.4 56 0.0012 27.6 6.1 18 328-345 3-20 (141)
24 PF09851 SHOCT: Short C-termin 48.2 43 0.00094 20.6 3.9 26 185-210 5-30 (31)
25 PRK06543 nicotinate-nucleotide 44.8 1.9E+02 0.0042 28.0 9.7 29 38-69 110-138 (281)
26 PRK06096 molybdenum transport 44.3 1.5E+02 0.0032 28.8 8.9 31 38-69 106-136 (284)
27 PF00009 GTP_EFTU: Elongation 44.2 94 0.002 27.5 7.3 48 327-387 84-131 (188)
28 PRK06559 nicotinate-nucleotide 44.0 3.1E+02 0.0068 26.7 11.0 29 38-69 118-146 (290)
29 PLN00112 malate dehydrogenase 43.7 16 0.00034 37.8 2.2 57 332-394 172-232 (444)
30 PRK13534 7-cyano-7-deazaguanin 43.4 41 0.00089 36.5 5.4 48 133-181 73-120 (639)
31 PF09373 PMBR: Pseudomurein-bi 43.2 35 0.00077 21.4 3.0 25 194-218 2-26 (33)
32 cd01336 MDH_cytoplasmic_cytoso 43.1 20 0.00044 35.4 2.9 59 332-394 74-134 (325)
33 PF02450 LCAT: Lecithin:choles 42.9 31 0.00067 35.0 4.2 60 367-426 107-174 (389)
34 TIGR01758 MDH_euk_cyt malate d 42.7 20 0.00044 35.4 2.8 57 332-394 71-131 (324)
35 TIGR01772 MDH_euk_gproteo mala 42.5 26 0.00057 34.4 3.5 55 332-393 63-121 (312)
36 COG0157 NadC Nicotinate-nucleo 42.3 2.5E+02 0.0055 27.1 9.9 108 38-192 109-226 (280)
37 COG0039 Mdh Malate/lactate deh 41.2 23 0.0005 34.8 2.9 58 332-394 65-124 (313)
38 cd00300 LDH_like L-lactate deh 40.5 18 0.0004 35.2 2.1 58 332-394 62-121 (300)
39 TIGR03566 FMN_reduc_MsuE FMN r 40.3 70 0.0015 28.2 5.7 55 325-390 57-113 (174)
40 TIGR02836 spore_IV_A stage IV 38.9 1.1E+02 0.0023 31.6 7.2 51 336-392 144-194 (492)
41 cd06533 Glyco_transf_WecG_TagA 38.6 1.5E+02 0.0031 26.2 7.4 40 335-393 98-137 (171)
42 cd05290 LDH_3 A subgroup of L- 38.5 30 0.00065 33.9 3.2 58 332-394 64-125 (307)
43 PRK13556 azoreductase; Provisi 37.8 1E+02 0.0022 28.0 6.5 54 327-391 80-148 (208)
44 PRK13555 azoreductase; Provisi 37.5 93 0.002 28.6 6.1 54 327-391 80-148 (208)
45 cd01337 MDH_glyoxysomal_mitoch 36.8 27 0.00059 34.3 2.6 55 332-393 64-122 (310)
46 PLN02602 lactate dehydrogenase 36.8 25 0.00053 35.2 2.4 56 332-394 101-160 (350)
47 COG1182 AcpD Acyl carrier prot 36.2 1.2E+02 0.0027 27.7 6.5 54 328-392 79-147 (202)
48 PF02601 Exonuc_VII_L: Exonucl 36.1 1.1E+02 0.0024 29.8 6.9 50 324-383 57-112 (319)
49 PF01926 MMR_HSR1: 50S ribosom 35.9 82 0.0018 25.3 5.1 45 328-386 71-115 (116)
50 PRK10528 multifunctional acyl- 35.8 1.4E+02 0.003 26.6 7.0 19 262-280 2-20 (191)
51 TIGR01763 MalateDH_bact malate 35.7 27 0.00059 34.2 2.4 54 334-394 67-124 (305)
52 PF02421 FeoB_N: Ferrous iron 34.7 70 0.0015 28.0 4.6 38 335-387 77-114 (156)
53 PF00056 Ldh_1_N: lactate/mala 34.5 8.2 0.00018 33.1 -1.3 55 332-393 65-123 (141)
54 PF03358 FMN_red: NADPH-depend 34.3 94 0.002 26.4 5.4 56 323-389 57-117 (152)
55 cd05294 LDH-like_MDH_nadp A la 34.2 41 0.00088 33.0 3.4 57 332-393 68-126 (309)
56 PF13653 GDPD_2: Glycerophosph 34.1 39 0.00085 20.8 2.1 18 98-116 12-29 (30)
57 PRK01008 queuine tRNA-ribosylt 34.0 61 0.0013 32.7 4.6 75 134-215 76-186 (372)
58 PF03808 Glyco_tran_WecB: Glyc 33.8 1.2E+02 0.0026 26.8 6.1 50 325-393 88-139 (172)
59 TIGR01771 L-LDH-NAD L-lactate 33.8 26 0.00057 34.2 1.9 55 332-393 60-118 (299)
60 PLN02716 nicotinate-nucleotide 33.5 4.7E+02 0.01 25.7 11.0 27 38-69 123-149 (308)
61 PF10662 PduV-EutP: Ethanolami 33.2 2.9E+02 0.0063 23.8 8.1 77 327-423 54-141 (143)
62 TIGR00222 panB 3-methyl-2-oxob 32.7 1.3E+02 0.0028 28.9 6.3 66 98-175 6-73 (263)
63 PF09547 Spore_IV_A: Stage IV 32.1 67 0.0014 33.1 4.5 30 363-393 166-195 (492)
64 COG0761 lytB 4-Hydroxy-3-methy 31.7 92 0.002 30.1 5.1 48 328-394 204-251 (294)
65 PRK05086 malate dehydrogenase; 31.3 40 0.00087 33.1 2.8 56 332-393 65-123 (312)
66 PRK05848 nicotinate-nucleotide 31.1 4.9E+02 0.011 25.1 10.1 29 38-69 103-131 (273)
67 COG1159 Era GTPase [General fu 30.6 1.5E+02 0.0032 28.9 6.4 47 328-387 77-123 (298)
68 cd05291 HicDH_like L-2-hydroxy 30.4 37 0.0008 33.1 2.4 55 333-394 65-123 (306)
69 cd01894 EngA1 EngA1 subfamily. 30.2 2E+02 0.0043 23.8 6.8 44 331-387 71-114 (157)
70 COG2003 RadC DNA repair protei 30.2 48 0.001 30.8 2.9 100 33-151 104-210 (224)
71 COG2022 ThiG Uncharacterized e 29.2 1.7E+02 0.0037 27.5 6.2 65 100-181 145-210 (262)
72 PRK00170 azoreductase; Reviewe 28.7 1.3E+02 0.0029 26.8 5.7 54 326-390 76-144 (201)
73 PF05690 ThiG: Thiazole biosyn 28.3 93 0.002 29.2 4.4 67 99-181 137-203 (247)
74 cd06557 KPHMT-like Ketopantoat 27.7 5.4E+02 0.012 24.5 10.9 15 137-151 30-44 (254)
75 cd01884 EF_Tu EF-Tu subfamily. 27.4 2.4E+02 0.0053 25.4 7.1 14 332-345 84-97 (195)
76 PF08044 DUF1707: Domain of un 26.9 1E+02 0.0022 21.7 3.4 31 185-215 12-42 (53)
77 cd01858 NGP_1 NGP-1. Autoanti 26.1 1.6E+02 0.0034 25.2 5.4 14 332-345 4-17 (157)
78 PRK00066 ldh L-lactate dehydro 26.1 52 0.0011 32.3 2.6 55 332-393 69-127 (315)
79 PRK11840 bifunctional sulfur c 25.9 1.7E+02 0.0038 28.8 6.1 65 100-181 212-277 (326)
80 TIGR00696 wecB_tagA_cpsF bacte 25.7 2.4E+02 0.0051 25.2 6.5 40 335-393 99-138 (177)
81 PLN02424 ketopantoate hydroxym 25.7 4.7E+02 0.01 25.9 9.0 68 99-178 27-96 (332)
82 cd01339 LDH-like_MDH L-lactate 25.7 58 0.0013 31.6 2.8 56 332-394 62-121 (300)
83 TIGR00430 Q_tRNA_tgt tRNA-guan 25.5 91 0.002 31.5 4.2 75 134-215 74-166 (368)
84 TIGR02690 resist_ArsH arsenica 25.3 1.8E+02 0.0039 27.0 5.9 54 326-390 80-140 (219)
85 CHL00162 thiG thiamin biosynth 25.0 2.3E+02 0.0051 27.0 6.4 66 100-181 152-217 (267)
86 PRK07428 nicotinate-nucleotide 24.8 5.3E+02 0.011 25.0 9.2 29 38-69 117-145 (288)
87 TIGR00436 era GTP-binding prot 24.8 2E+02 0.0044 27.2 6.4 44 330-387 73-116 (270)
88 PRK12569 hypothetical protein; 24.6 2.1E+02 0.0045 27.1 6.1 41 323-366 45-86 (245)
89 TIGR03567 FMN_reduc_SsuE FMN r 24.5 1.9E+02 0.0041 25.3 5.7 54 326-390 55-110 (171)
90 cd01859 MJ1464 MJ1464. This f 24.4 2E+02 0.0043 24.4 5.7 13 333-345 9-21 (156)
91 PF00350 Dynamin_N: Dynamin fa 24.3 2.5E+02 0.0053 23.9 6.4 47 328-386 120-166 (168)
92 KOG0058 Peptide exporter, ABC 24.3 1.2E+02 0.0027 33.0 5.1 17 124-140 222-238 (716)
93 cd05293 LDH_1 A subgroup of L- 24.0 46 0.001 32.7 1.8 54 333-393 68-125 (312)
94 PLN00106 malate dehydrogenase 24.0 69 0.0015 31.7 3.0 56 331-392 81-139 (323)
95 cd01856 YlqF YlqF. Proteins o 23.5 1.6E+02 0.0035 25.6 5.1 20 327-346 10-29 (171)
96 PF08262 Lem_TRP: Leucophaea m 23.3 33 0.00072 15.5 0.3 6 138-143 4-9 (10)
97 PF08853 DUF1823: Domain of un 23.2 26 0.00057 28.7 -0.1 15 131-145 78-92 (116)
98 COG1084 Predicted GTPase [Gene 23.1 2.1E+02 0.0045 28.4 5.9 25 363-387 265-289 (346)
99 PTZ00325 malate dehydrogenase; 22.8 63 0.0014 31.9 2.5 57 332-394 72-131 (321)
100 PRK03003 GTP-binding protein D 22.7 2.6E+02 0.0056 29.1 7.1 44 331-387 112-155 (472)
101 PF04481 DUF561: Protein of un 22.5 4.9E+02 0.011 24.3 7.8 83 166-262 72-155 (242)
102 cd00377 ICL_PEPM Members of th 22.5 2.6E+02 0.0056 26.3 6.5 21 134-154 24-44 (243)
103 TIGR00449 tgt_general tRNA-gua 22.4 1.4E+02 0.003 30.1 4.8 75 134-215 74-166 (367)
104 COG0431 Predicted flavoprotein 22.4 2.2E+02 0.0048 25.4 5.8 57 324-391 55-113 (184)
105 PRK06223 malate dehydrogenase; 22.3 60 0.0013 31.5 2.2 55 333-394 67-125 (307)
106 PF11071 DUF2872: Protein of u 22.2 1.8E+02 0.0039 24.7 4.6 41 330-384 66-106 (141)
107 cd01885 EF2 EF2 (for archaea a 22.0 3.4E+02 0.0074 25.1 7.1 45 329-386 89-133 (222)
108 cd05295 MDH_like Malate dehydr 22.0 59 0.0013 33.7 2.1 25 332-359 195-219 (452)
109 PTZ00117 malate dehydrogenase; 21.8 61 0.0013 31.9 2.2 57 333-394 70-128 (319)
110 PRK00093 GTP-binding protein D 21.8 2.8E+02 0.006 28.3 7.1 44 331-387 75-118 (435)
111 TIGR03596 GTPase_YlqF ribosome 21.7 2.2E+02 0.0048 27.1 6.0 19 327-345 12-30 (276)
112 TIGR03594 GTPase_EngA ribosome 21.7 2.7E+02 0.0059 28.2 7.1 45 330-387 72-116 (429)
113 PLN03007 UDP-glucosyltransfera 21.6 2.4E+02 0.0052 29.5 6.6 70 141-210 345-438 (482)
114 PRK01355 azoreductase; Reviewe 21.4 3E+02 0.0065 24.8 6.5 39 325-374 66-104 (199)
115 cd01886 EF-G Elongation factor 21.3 3.5E+02 0.0077 25.8 7.3 16 330-345 81-96 (270)
116 PRK10569 NAD(P)H-dependent FMN 21.1 2.4E+02 0.0053 25.4 5.8 54 326-390 56-111 (191)
117 TIGR03594 GTPase_EngA ribosome 21.1 3E+02 0.0065 27.9 7.2 45 330-387 248-292 (429)
118 PRK09739 hypothetical protein; 20.7 2.3E+02 0.0051 25.4 5.7 56 325-391 68-133 (199)
119 PRK00112 tgt queuine tRNA-ribo 20.5 1.5E+02 0.0032 29.9 4.6 75 134-215 78-170 (366)
120 COG1647 Esterase/lipase [Gener 20.5 5.8E+02 0.013 24.0 7.9 91 30-145 23-113 (243)
121 TIGR02383 Hfq RNA chaperone Hf 20.4 1.9E+02 0.0041 21.1 3.9 25 366-391 4-28 (61)
122 KOG0853 Glycosyltransferase [C 20.2 1.8E+02 0.0038 30.6 5.1 47 369-424 382-428 (495)
123 PRK05406 LamB/YcsF family prot 20.1 2.9E+02 0.0064 26.1 6.2 41 323-366 42-83 (246)
124 PF09587 PGA_cap: Bacterial ca 20.0 3.3E+02 0.0071 25.4 6.7 69 329-412 175-244 (250)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=5.6e-98 Score=801.82 Aligned_cols=428 Identities=53% Similarity=1.011 Sum_probs=383.1
Q ss_pred CCCCcccceeeCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHccCC---------CCCCeeEEeeccccccCCC
Q 014083 2 YNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNT---------GSRLKVAACCKHYTAYDLD 72 (431)
Q Consensus 2 ~~~~~~G~~~~aP~~di~~~p~~~r~~~~fgeDp~lv~~~~~a~i~G~q~~~---------~g~~gv~a~~KHfpg~g~~ 72 (431)
|+.+.+|+++|+|++||.|||||||++|||||||+++++|+.+||+|||+.+ .++.+|++|+||||||+++
T Consensus 144 g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e 223 (779)
T PLN03080 144 YNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLE 223 (779)
T ss_pred ccccccCcceeecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCcc
Confidence 3455578998999999999999999999999999999999999999999852 1233599999999999988
Q ss_pred CCCCCCccccccccCHHHHHhhhcHHHHHHHHhCCcceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhh
Q 014083 73 NWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVG 152 (431)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~~g~~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~ 152 (431)
.+.+..|...++.+++++|+|+||+||+++|++|.+.+|||||+.+||+|+|.|+++|+. ||+||||+|+|||||++|.
T Consensus 224 ~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~ 302 (779)
T PLN03080 224 KWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVA 302 (779)
T ss_pred ccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHH
Confidence 766778888888999999999999999999999878899999999999999999999986 9999999999999999999
Q ss_pred hhhccccccCChHHHHHHHHHcCCCccCchhhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 014083 153 VLYNTQHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLG 232 (431)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~al~AG~D~~~~~~~~~~l~~av~~g~~~~~~l~~av~ril~~k~~~gl~~~~p~~~~~~~~~ 232 (431)
.+...+++..+.++++++|++||+||+|..++.+.+.+||++|++++++||+||+|||++|+++|+|+..|...++....
T Consensus 303 ~~~~~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~ 382 (779)
T PLN03080 303 TIFEYQTYTKSPEDAVADVLKAGMDINCGSYMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLG 382 (779)
T ss_pred HhhhcccccCCHHHHHHHHHHcCCCcccCchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccc
Confidence 99887777778899999999999999998877889999999999999999999999999999999999333323343444
Q ss_pred CCcCCCHHHHHHHHHHhhcceEEeecCCCCCCCcCCCCCeEEEECCCCCcccccccccccCCCCCCCHHHHHHHhh-ccc
Q 014083 233 PRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA-KTI 311 (431)
Q Consensus 233 ~~~v~~~~~~~la~e~a~esivLLKN~~~~LPL~~~~~~kiavig~~a~~~~~~~G~~~~~~~~~~t~~~~l~~~~-~~~ 311 (431)
...+++++|+++|+|+|++|||||||++++|||++.+.++|+||||.++....++|+|++.++...+++++|+++. .+.
T Consensus 383 ~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~ 462 (779)
T PLN03080 383 PNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTS 462 (779)
T ss_pred ccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcce
Confidence 5678899999999999999999999999999998655579999999999988888888888888899999999875 466
Q ss_pred eeccCCccccCCcccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCcee
Q 014083 312 HQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV 391 (431)
Q Consensus 312 ~~~g~~~~~~~~~~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~ 391 (431)
|..|+....+.++..+.+++++|+++|+|||++|.+...++||.||.++.||..|.+||++|++.+++|||||+++|+|+
T Consensus 463 y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv 542 (779)
T PLN03080 463 FAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPV 542 (779)
T ss_pred eccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCcee
Confidence 88887544333455688899999999999999999888899999999999999999999999976667899999999999
Q ss_pred eecCcCCCCCccEEEEccCcchhhHHHHHHHhhcCCCCC
Q 014083 392 DVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPG 430 (431)
Q Consensus 392 ~l~~~~~~~~v~ail~~~~~g~~~g~A~advL~G~~nPs 430 (431)
+++|+.+.++|+|||++|||||++|+|+||||||++|||
T Consensus 543 ~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPs 581 (779)
T PLN03080 543 DVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPG 581 (779)
T ss_pred eccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCC
Confidence 999987667899999999999999999999999999998
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=6.4e-90 Score=741.93 Aligned_cols=414 Identities=33% Similarity=0.507 Sum_probs=355.4
Q ss_pred ccccee-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHccCCC-CCCeeEEeeccccccCCCCCCCCCccccc
Q 014083 6 MAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTG-SRLKVAACCKHYTAYDLDNWNGVDRYHFN 83 (431)
Q Consensus 6 ~~G~~~-~aP~~di~~~p~~~r~~~~fgeDp~lv~~~~~a~i~G~q~~~~-g~~gv~a~~KHfpg~g~~~~~~~~~~~~~ 83 (431)
..|||+ |||++||.|||+|||++|||||||++|++|+.|||+|||+.+. +..||++|+|||||||..+ .+|....
T Consensus 148 a~Gin~~laPv~Dv~r~p~~gr~~rsfgeDP~lv~~~~~a~v~GlQ~~~~~~~~gV~a~~KHFpG~g~~~---~~~~~~~ 224 (765)
T PRK15098 148 DDGLNMTWAPMVDISRDPRWGRASEGFGEDTYLTSIMGKTMVKAMQGKSPADRYSVMTSVKHFALYGAVE---GGRDYNT 224 (765)
T ss_pred HcCCCEEeeCcccccCCCCccccccCcCCCHHHHHHHHHHHHHHHcCCCCCCCCCEEEECcEEeCCCCcc---cCccCcc
Confidence 459999 9999999999999999999999999999999999999998631 2237999999999999532 1233345
Q ss_pred cccCHHHHHhhhcHHHHHHHHhCCcceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCC
Q 014083 84 ARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (431)
Q Consensus 84 ~~~~~~~l~~~~l~pF~~~i~~g~~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~ 163 (431)
+.+++++|++.||+||+++|++| +.+|||||+.+||+|+|+|+++|+++||++|||+|+|||||++|..+.. |++..+
T Consensus 225 ~~~~~~~l~e~~l~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~-~~~~~~ 302 (765)
T PRK15098 225 VDMSPQRMFNDYLPPYKAGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK-HGVAAD 302 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh-cccCCC
Confidence 67899999999999999999887 8999999999999999999999999999999999999999999998874 666668
Q ss_pred hHHHHHHHHHcCCCccCchh-hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC---CCCCcCCCH
Q 014083 164 PEEAAADAIKAGLDLDCGPF-LAIHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGN---LGPRDVCTP 239 (431)
Q Consensus 164 ~~~~~~~al~AG~D~~~~~~-~~~~l~~av~~g~~~~~~l~~av~ril~~k~~~gl~~~~p~~~~~~~---~~~~~v~~~ 239 (431)
..+++++|++||+||+|.+. +.+.+.+++++|++++++||+||+|||++|+++|+|+ +|+...... .....+.++
T Consensus 303 ~~ea~~~Al~AG~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~p~~~~~~~~~~~~~~~~~~~ 381 (765)
T PRK15098 303 PEDAVRLALKSGIDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-DPYSHLGPKESDPVDTNAESR 381 (765)
T ss_pred HHHHHHHHHHcCCCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-CCccccccccccccccccCCH
Confidence 89999999999999998654 3457899999999999999999999999999999999 776321100 011234568
Q ss_pred HHHHHHHHHhhcceEEeecCCCCCCCcCCCCCeEEEECCCCCcccccccccc--cCCCCCCCHHHHHHHhh----cccee
Q 014083 240 AHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA--GVACGYTTPLQGISRYA----KTIHQ 313 (431)
Q Consensus 240 ~~~~la~e~a~esivLLKN~~~~LPL~~~~~~kiavig~~a~~~~~~~G~~~--~~~~~~~t~~~~l~~~~----~~~~~ 313 (431)
+|+++++++|++|||||||++++|||+.. +||+|+||.++....+.|+|+ +.+.+.++++++|++.. .+.|.
T Consensus 382 ~~~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~ 459 (765)
T PRK15098 382 LHRKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYA 459 (765)
T ss_pred HHHHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEe
Confidence 99999999999999999999999999854 699999999988765567664 45667899999999864 35577
Q ss_pred ccCCccc-------------------cCCcccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHH
Q 014083 314 AGCFGVA-------------------CNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 374 (431)
Q Consensus 314 ~g~~~~~-------------------~~~~~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~ 374 (431)
.|+.... ...+..+++++++|+++|++||++|.+...++||.||+++.||+.|.+||++|+
T Consensus 460 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~ 539 (765)
T PRK15098 460 KGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALK 539 (765)
T ss_pred cccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHH
Confidence 7763210 011245788899999999999999988888999999999999999999999998
Q ss_pred hhCCCCEEEEEeCCceeeecCcCCCCCccEEEEccCcchhhHHHHHHHhhcCCCCC
Q 014083 375 KASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPG 430 (431)
Q Consensus 375 ~~~~~pvVvV~~~g~P~~l~~~~~~~~v~ail~~~~~g~~~g~A~advL~G~~nPs 430 (431)
+ .+||||||+++|+||+|+|+. ++++|||++|+||+++|+|+|+||||++|||
T Consensus 540 ~-~~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPs 592 (765)
T PRK15098 540 A-TGKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPS 592 (765)
T ss_pred H-hCcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCC
Confidence 7 467999999999999999863 4899999999999999999999999999998
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-58 Score=456.85 Aligned_cols=256 Identities=31% Similarity=0.514 Sum_probs=220.1
Q ss_pred ccccee-eCccccccCCCCCCccccc-cCCCHHHHHHHHHHHHHHHccCCCCCCeeEEeeccccccCCCCCCCCCccccc
Q 014083 6 MAGLTY-WSPNVNIFRDPRWGRGQET-PGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFN 83 (431)
Q Consensus 6 ~~G~~~-~aP~~di~~~p~~~r~~~~-fgeDp~lv~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~g~~~~~~~~~~~~~ 83 (431)
..|||+ ||||+||.|||+|||..++ |||||++|+.|+.|||+|||+. ||++|+|||||||..+ .++....
T Consensus 111 a~Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-----gv~at~KHFpGhG~~~---~dsh~~~ 182 (397)
T COG1472 111 ALGINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-----GVAATIKHFPGHGAVE---GDSHYGL 182 (397)
T ss_pred HcCCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-----CceeeeccccCCCCCc---CCccccc
Confidence 349999 9999999999999977666 9999999999999999999999 8999999999998543 1221112
Q ss_pred cccCHHHHHhhhcHHHHHHHHhCC--cceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhcccccc
Q 014083 84 ARVSKQDLEDTYNVPFKACVVEGK--VASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYT 161 (431)
Q Consensus 84 ~~~~~~~l~~~~l~pF~~~i~~g~--~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~ 161 (431)
+.++++.|+|.|++||+.+++.|. +.++|++|+.+||.|||+|+++|+++||++|||+|+|||||++|.++...+
T Consensus 183 ~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~--- 259 (397)
T COG1472 183 LPIDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAH--- 259 (397)
T ss_pred CCCChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhc---
Confidence 578999999999999999999986 788888999999999999999999999999999999999999999876543
Q ss_pred CChHHHHHHHHHcCCCccCchh-hH-HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcCCCH
Q 014083 162 RTPEEAAADAIKAGLDLDCGPF-LA-IHTEGAVRGGLLREEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTP 239 (431)
Q Consensus 162 ~~~~~~~~~al~AG~D~~~~~~-~~-~~l~~av~~g~~~~~~l~~av~ril~~k~~~gl~~~~p~~~~~~~~~~~~v~~~ 239 (431)
.+..+.+.++++|||||+|.+. .. ..+..+...+ +++++++++++|||+.|+++|+|+ +|+..
T Consensus 260 g~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~~~~------------- 324 (397)
T COG1472 260 GSAADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NPYSS------------- 324 (397)
T ss_pred cCHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CCCch-------------
Confidence 3667888889999999998653 22 2333333344 999999999999999999999999 77621
Q ss_pred HHHHHHHHHhhcceEEeecCCCCCCCcCCCCCeEEEECCCCCcccccccccc
Q 014083 240 AHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 291 (431)
Q Consensus 240 ~~~~la~e~a~esivLLKN~~~~LPL~~~~~~kiavig~~a~~~~~~~G~~~ 291 (431)
+|++++++++++|+|||||+..+||++ +..++|+++||.+.+. . |+|+
T Consensus 325 ~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 325 EHRALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 899999999999999999998999999 5557999999999887 4 5554
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=1.1e-52 Score=409.10 Aligned_cols=194 Identities=32% Similarity=0.533 Sum_probs=162.3
Q ss_pred ccccee-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHccCCCCCCeeEEeeccccccC-CCCCCCCCccccc
Q 014083 6 MAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYD-LDNWNGVDRYHFN 83 (431)
Q Consensus 6 ~~G~~~-~aP~~di~~~p~~~r~~~~fgeDp~lv~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~g-~~~~~~~~~~~~~ 83 (431)
..|||+ ||||+||.|+|+|||++|||||||++|++|+.|||+|+|+. ||++|+||||||+ .++|.+.+ .
T Consensus 100 ~~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q~~-----gv~~~~KHFpG~~~~d~~~~~~----~ 170 (299)
T PF00933_consen 100 ALGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQGA-----GVAATAKHFPGHGAQDSHRDLP----S 170 (299)
T ss_dssp HTT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHHCT-----TSEEEEEEETTGGCSCTTTTTE----E
T ss_pred HhhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccccc-----cccccccccccccccccccccc----e
Confidence 359999 99999999999999999999999999999999999999999 8999999999984 55665544 4
Q ss_pred cccCHHHHHhhhcHHHHHHHHhCCcceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCC
Q 014083 84 ARVSKQDLEDTYNVPFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRT 163 (431)
Q Consensus 84 ~~~~~~~l~~~~l~pF~~~i~~g~~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~ 163 (431)
+.++.++|++.||+||+.+|+++++.+||+||+.+|++|+|+|+++|+++||++|||+|+|||||++|.++...+ .
T Consensus 171 ~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~----~ 246 (299)
T PF00933_consen 171 VDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGTPASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNY----S 246 (299)
T ss_dssp EE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTEEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCT----T
T ss_pred ecCCcccccchhcccchhcccccccceeeeeccccCCccchhhhccchhhCcCcccCCCeEecccchHHHHHhcc----c
Confidence 467999999999999999995555999999999999999999999999999999999999999999999997643 4
Q ss_pred hHHHHHHHHHcCCCccCchh----hHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 014083 164 PEEAAADAIKAGLDLDCGPF----LAIHTEGAVRGGLLREEDVNLALAYTITV 212 (431)
Q Consensus 164 ~~~~~~~al~AG~D~~~~~~----~~~~l~~av~~g~~~~~~l~~av~ril~~ 212 (431)
..+++++|++||+||+|.+. ..+.+.++|++|.++++|||+|++|||++
T Consensus 247 ~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 247 IEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISEERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCHHHHHHHHHHHhcC
Confidence 78999999999999998643 24899999999999999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=1.2e-44 Score=355.24 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=159.4
Q ss_pred ccccee-eCccccccCCCCCCccccccCCCHHHHHHHHHHHHHHHccCCCCCCeeEEeeccccccCC---CCCCCCCccc
Q 014083 6 MAGLTY-WSPNVNIFRDPRWGRGQETPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDL---DNWNGVDRYH 81 (431)
Q Consensus 6 ~~G~~~-~aP~~di~~~p~~~r~~~~fgeDp~lv~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~g~---~~~~~~~~~~ 81 (431)
..|||+ ||||+||.++++| |+.|||||||++|++|+.||++|||+. ||++|+|||||||. ++|.+.+..
T Consensus 112 a~Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-----gv~~~~KHFpG~G~~~~dsh~~~~~~- 184 (337)
T PRK05337 112 ACGIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-----GMAATGKHFPGHGAVEADSHVETPVD- 184 (337)
T ss_pred HhCCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-----CCEEEecccCCCCCCcCCCCCCCCCC-
Confidence 459999 9999999854433 889999999999999999999999999 89999999999985 345544432
Q ss_pred cccccCHHHHHhhhcHHHHHHHHhCCcceEeec---ccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccc
Q 014083 82 FNARVSKQDLEDTYNVPFKACVVEGKVASVMCS---YNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQ 158 (431)
Q Consensus 82 ~~~~~~~~~l~~~~l~pF~~~i~~g~~~~vM~s---y~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~ 158 (431)
..+.++|++.||+||+.+|++| +.+||+| |+.+|+.|||+|+++|+++||+||||+|+|||||++|.++..
T Consensus 185 ---~~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~-- 258 (337)
T PRK05337 185 ---ERPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV-- 258 (337)
T ss_pred ---CCCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh--
Confidence 3477899999999999999988 8999999 788899999999999999999999999999999999987642
Q ss_pred cccCChHHHHHHHHHcCCCccCchh---hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q 014083 159 HYTRTPEEAAADAIKAGLDLDCGPF---LAIHTEGAVRGGLLREEDVNLALAYTITVQMRL 216 (431)
Q Consensus 159 ~~~~~~~~~~~~al~AG~D~~~~~~---~~~~l~~av~~g~~~~~~l~~av~ril~~k~~~ 216 (431)
..+..+++++|++||+||+|.+. ....+.+++.+ +.+.+|+++++.+.
T Consensus 259 --~~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 259 --AGDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred --cCCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 34778999999999999987643 33455566644 67788888888763
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=99.94 E-value=7.5e-27 Score=219.14 Aligned_cols=169 Identities=40% Similarity=0.536 Sum_probs=126.8
Q ss_pred eEEeecCCCCCCCcCCCCCeEEEECCCCCccccccccccc-CCCCCCCHHHHHHHhhccc---eeccCCccccCCcccHH
Q 014083 253 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAG-VACGYTTPLQGISRYAKTI---HQAGCFGVACNGNQLIG 328 (431)
Q Consensus 253 ivLLKN~~~~LPL~~~~~~kiavig~~a~~~~~~~G~~~~-~~~~~~t~~~~l~~~~~~~---~~~g~~~~~~~~~~~~~ 328 (431)
||||||++++|||++++. ||+|+|+.+..+..++|+++. .+....+++++|++++... +..+.. ...+...+.
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999997743 999999999987665555433 4445678999999885422 111111 112456788
Q ss_pred HHHHHhhcCCEEEEEeeCCCCccccc--------CCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceeeecCcCCCC
Q 014083 329 AAEVAARQADATVLVMGLDQSIEAEF--------IDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDP 400 (431)
Q Consensus 329 ~~~~~a~~aD~vIv~~g~~~~~~~eg--------~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l~~~~~~~ 400 (431)
++.+.++++|++||++|. .++|| .||.++.++..|.+||+++++.+ +|+|||+++++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 899999999999999982 23444 58999999999999999999864 6899998999999997764 4
Q ss_pred CccEEEEccCcchhhHHHHHHHhhcCCCCC
Q 014083 401 RIGAILWVGYPGQAGGAAIADVLFGRANPG 430 (431)
Q Consensus 401 ~v~ail~~~~~g~~~g~A~advL~G~~nPs 430 (431)
+++|||++|++|+++++|++|||||++|||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~Ps 181 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPS 181 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCC
Confidence 899999999999999999999999999998
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=87.99 E-value=14 Score=37.88 Aligned_cols=227 Identities=19% Similarity=0.208 Sum_probs=115.6
Q ss_pred HHHhCCcceEeecccccCC-----ccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcC-
Q 014083 102 CVVEGKVASVMCSYNQVNG-----KPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAG- 175 (431)
Q Consensus 102 ~i~~g~~~~vM~sy~~v~g-----~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG- 175 (431)
.|+++ .-.+|.+.+.+.| ..++.++-+++.+|+.=+.. |.-+. .+.|-..+||.+|
T Consensus 60 ~iDe~-lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~A----------------epGEFs~RAFLNgK 121 (454)
T COG0486 60 IIDEV-LVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLA----------------EPGEFSKRAFLNGK 121 (454)
T ss_pred Eeeee-eEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeec----------------CCCcchHHHHhcCC
Confidence 45555 5667888777766 46888888888887753332 23222 2334456666655
Q ss_pred CCccCch--------hhHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCCcCCCHHHHHH
Q 014083 176 LDLDCGP--------FLAIHTEGAVR--GGLLREEDVNLALAYTITVQMRLGM-FDGEPSAQPFGNLGPRDVCTPAHQQL 244 (431)
Q Consensus 176 ~D~~~~~--------~~~~~l~~av~--~g~~~~~~l~~av~ril~~k~~~gl-~~~~p~~~~~~~~~~~~v~~~~~~~l 244 (431)
+|+.--. ........|++ +|.+ .+++++-.++++.+....-- .| |++. ++.......+
T Consensus 122 ~DLtqAEai~dLI~A~te~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~vEa~ID-------fpee---di~~~~~~~i 190 (454)
T COG0486 122 LDLTQAEAIADLIDAKTEQAARIALRQLQGAL-SQLINELREALLELLAQVEANID-------FPEE---DIEELVLEKI 190 (454)
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHheEeCC-------CCcc---cccchhHHHH
Confidence 4442110 01123344444 4777 56778888888888776531 22 2211 1221122111
Q ss_pred HHHHh--hcce-EEeecCCCCCCCcCCCCCeEEEECCCCCcccccccccccCCCCCCCHHHHHHHhh--ccceeccCCcc
Q 014083 245 ALQAA--HQGI-VLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYA--KTIHQAGCFGV 319 (431)
Q Consensus 245 a~e~a--~esi-vLLKN~~~~LPL~~~~~~kiavig~~a~~~~~~~G~~~~~~~~~~t~~~~l~~~~--~~~~~~g~~~~ 319 (431)
..++. .+-+ .++..-..--.|. ++-|++++|+-. .|. .+++.+|-.+- -++-.+|++-.
T Consensus 191 ~~~l~~~~~~l~~ll~~~~~g~ilr--~G~kvvIiG~PN------vGK--------SSLLNaL~~~d~AIVTdI~GTTRD 254 (454)
T COG0486 191 REKLEELIAELDELLATAKQGKILR--EGLKVVIIGRPN------VGK--------SSLLNALLGRDRAIVTDIAGTTRD 254 (454)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh--cCceEEEECCCC------CcH--------HHHHHHHhcCCceEecCCCCCccc
Confidence 11111 1111 1222222223333 246899999321 222 24555554431 11112222100
Q ss_pred ------------------c--cCC-----cccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHH
Q 014083 320 ------------------A--CNG-----NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 374 (431)
Q Consensus 320 ------------------~--~~~-----~~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~ 374 (431)
. ..+ ...++++.+.+++||.|++++..+. .++.....+++.+.
T Consensus 255 viee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~------------~~~~~d~~~~~~~~ 322 (454)
T COG0486 255 VIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQ------------PLDKEDLALIELLP 322 (454)
T ss_pred eEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC------------CCchhhHHHHHhcc
Confidence 0 011 2356788899999999999985321 24555667777333
Q ss_pred hhCCCCEEEEEeC
Q 014083 375 KASRGPVVLVLMC 387 (431)
Q Consensus 375 ~~~~~pvVvV~~~ 387 (431)
.++|+++|++-
T Consensus 323 --~~~~~i~v~NK 333 (454)
T COG0486 323 --KKKPIIVVLNK 333 (454)
T ss_pred --cCCCEEEEEec
Confidence 45789988764
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=78.80 E-value=6.2 Score=40.35 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 328 ~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
+++..++.+||++|+++... -.+.+...++.+.|. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~------------~Git~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR------------EGITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC------------CCCCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 45667889999999998532 235667777778777 467899999884
No 9
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=72.45 E-value=14 Score=26.54 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=25.1
Q ss_pred cCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhC-CCCEEEEEe
Q 014083 336 QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKAS-RGPVVLVLM 386 (431)
Q Consensus 336 ~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~-~~pvVvV~~ 386 (431)
-.++|++++..+ +.-| + --.+|.+|.+.+...+ ++|+++|++
T Consensus 13 L~~~ilfi~D~S---e~CG-----y-sie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 13 LADAILFIIDPS---EQCG-----Y-SIEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp T-SEEEEEE-TT----TTS-----S--HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred hcceEEEEEcCC---CCCC-----C-CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 456777776432 1111 1 1457999999999877 789988865
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=62.71 E-value=6.6 Score=38.84 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=33.6
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChh--HHHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGR--QQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~--q~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|.. .++|.+|.++--... -+++++.+.+.+.+..++++. +||+|+.
T Consensus 75 ~~~~daDvVVitAG~~---~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 135 (323)
T TIGR01759 75 EAFKDVDAALLVGAFP---RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTN 135 (323)
T ss_pred HHhCCCCEEEEeCCCC---CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 5678999999988753 245555533211100 134455666544325665555 4999873
No 11
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=61.08 E-value=14 Score=38.76 Aligned_cols=48 Identities=27% Similarity=0.263 Sum_probs=34.7
Q ss_pred HhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcCCCccCc
Q 014083 133 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 181 (431)
Q Consensus 133 ~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG~D~~~~ 181 (431)
=|++=+||+|.|+||.++-+...-. ....++++.+.---.-|.|+.|.
T Consensus 74 Glh~f~~w~g~ilTDSGgfQv~s~g-~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 74 GLHKLLGFDGPIMTDSGSYQLLVYG-DVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred CHHHHhCCCCCeEeccCCcEEEEcC-CccCCHHHHHHHHHHhCCCEEeE
Confidence 3677789999999999987655432 23357777665555689999874
No 12
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.75 E-value=38 Score=34.93 Aligned_cols=49 Identities=24% Similarity=0.174 Sum_probs=29.3
Q ss_pred ccHHHHHHHhhc--CCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEE
Q 014083 325 QLIGAAEVAARQ--ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVL 383 (431)
Q Consensus 325 ~~~~~~~~~a~~--aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVv 383 (431)
..+.+++..+.. .|++|++=|. +...+|. +-++.++++++++ +..|||.
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGG--------GS~eDL~-~Fn~e~v~~ai~~-~~~Pvis 229 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGG--------GSLEDLW-AFNDEAVARAIAA-SRIPVIS 229 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCC--------CCHHHhh-ccCcHHHHHHHHc-CCCCEEE
Confidence 445556655555 4888775332 1222332 3357789999986 6788653
No 13
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=56.96 E-value=7.8 Score=38.14 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+.+|+||++.|... ++|.+|.++ =..- +++++.+.+...+..++++. +||+|+.
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~a~~~~ivivv-tNPvDv~ 116 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEYAKPTVKVLVI-GNPVNTN 116 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCchHHH
Confidence 46789999999877532 345455332 1112 23445555543222545445 5999873
No 14
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=54.76 E-value=1.3e+02 Score=29.13 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeeccccc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTA 68 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg 68 (431)
++.+++.||+-+++.++ ...|++|-|.+||
T Consensus 105 IAT~T~~~V~~~~~~~~-~~~I~~TRKT~Pg 134 (277)
T TIGR01334 105 VATYTHKMVTLAKKISP-MAVVACTRKAIPL 134 (277)
T ss_pred HHHHHHHHHHHHHhcCC-CCEEEecCCCCCC
Confidence 67788889988876321 1269999999998
No 15
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=54.69 E-value=31 Score=23.47 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=24.7
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q 014083 189 EGAVRGGLLREEDVNLALAYTITVQMRLG 217 (431)
Q Consensus 189 ~~av~~g~~~~~~l~~av~ril~~k~~~g 217 (431)
...++...-+.+.|+..|..+|.+|..+|
T Consensus 14 VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 14 VRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 34456678889999999999999999987
No 16
>PLN00135 malate dehydrogenase
Probab=53.98 E-value=11 Score=36.99 Aligned_cols=57 Identities=16% Similarity=0.307 Sum_probs=32.8
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+.+|+||++.|... ++|.+|.++ -..- +++++.+.+..++..++++. +||+|+.
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dl--l~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv~ 114 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDV--MSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANTN 114 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHHH
Confidence 56789999999887542 344444322 1111 34455565532345665555 4999873
No 17
>PRK05442 malate dehydrogenase; Provisional
Probab=53.53 E-value=12 Score=36.97 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=31.8
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|.. .++|.+|.++ -..- +++.+.+.+..++..++++. +||+|+.
T Consensus 76 ~~~~daDiVVitaG~~---~k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~ 136 (326)
T PRK05442 76 VAFKDADVALLVGARP---RGPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLVV-GNPANTN 136 (326)
T ss_pred HHhCCCCEEEEeCCCC---CCCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEe-CCchHHH
Confidence 5678999999887743 2345555332 1222 23444555533234555545 4999873
No 18
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=53.19 E-value=12 Score=37.10 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=32.6
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|.. .++|.+|.++ -..- +++...+.+..++..++++. +||+|+.
T Consensus 72 ~~~~~aDiVVitAG~~---~~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 132 (323)
T cd00704 72 EAFKDVDVAILVGAFP---RKPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN 132 (323)
T ss_pred HHhCCCCEEEEeCCCC---CCcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence 5678999999887753 2344454332 1122 34445565543345555555 5999863
No 19
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=50.95 E-value=66 Score=33.19 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=28.2
Q ss_pred ccHHHHHHHhhc---CCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEE
Q 014083 325 QLIGAAEVAARQ---ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVL 383 (431)
Q Consensus 325 ~~~~~~~~~a~~---aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVv 383 (431)
..+..+++.+.. .|++|++=|. +...+|. +-++..++++++. +..|||.
T Consensus 173 ~~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~-~~~Pvis 224 (432)
T TIGR00237 173 QSIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFL-SKIPIIS 224 (432)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHc-CCCCEEE
Confidence 344555554443 5887775332 1222332 3357789999985 7788763
No 20
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.56 E-value=49 Score=26.17 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEE
Q 014083 329 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 384 (431)
Q Consensus 329 ~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV 384 (431)
...+..+++|.||++++. .+..-...++..++..++|++.+
T Consensus 41 ~l~~~i~~aD~VIv~t~~---------------vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDY---------------VSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHhcCCCCEEEEEeCC---------------cChHHHHHHHHHHHHcCCcEEEE
Confidence 355678999999998753 23445678888888888998754
No 21
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=50.02 E-value=14 Score=36.49 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=32.1
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~----~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|... ++|.+|.++ -..-. ++...+.+...+..++++. +||+|+.
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~ 134 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTN 134 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHH
Confidence 56789999999877532 345454332 12222 3344555543224555545 5999873
No 22
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=48.57 E-value=13 Score=37.70 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~----~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+.+|+||++.|.. .++|.+|.++ -..-. ++.+.+.+..++..++++. +||+|+.
T Consensus 116 ~~~kdaDIVVitAG~p---rkpg~tR~dl--l~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~ 176 (387)
T TIGR01757 116 EVFEDADWALLIGAKP---RGPGMERADL--LDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTN 176 (387)
T ss_pred HHhCCCCEEEECCCCC---CCCCCCHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHH
Confidence 5678999999987753 2344444322 11222 3334455433334555544 5999873
No 23
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=48.36 E-value=56 Score=27.56 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=13.6
Q ss_pred HHHHHHhhcCCEEEEEee
Q 014083 328 GAAEVAARQADATVLVMG 345 (431)
Q Consensus 328 ~~~~~~a~~aD~vIv~~g 345 (431)
.++...++.+|++++++.
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456677888898888774
No 24
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=48.19 E-value=43 Score=20.63 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHH
Q 014083 185 AIHTEGAVRGGLLREEDVNLALAYTI 210 (431)
Q Consensus 185 ~~~l~~av~~g~~~~~~l~~av~ril 210 (431)
...+.+...+|.||++...+.-++||
T Consensus 5 L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 5 LEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35678889999999999999988886
No 25
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.83 E-value=1.9e+02 Score=27.97 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeecccccc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTAY 69 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~ 69 (431)
++.+++.||+-+.+.+ -.|++|=|++||.
T Consensus 110 IAT~T~~~V~~~~~~~---~~i~~TRKT~PG~ 138 (281)
T PRK06543 110 IATLTAAFVDAVNGTR---ARIVDTRKTTPGL 138 (281)
T ss_pred HHHHHHHHHHHhcCCC---CEEEeCCCCCCcc
Confidence 6777788888887631 2699999999984
No 26
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=44.29 E-value=1.5e+02 Score=28.79 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeecccccc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTAY 69 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~ 69 (431)
++.+++.||+-++..+ ....|++|=|.+||.
T Consensus 106 IAT~T~~~V~~~~~~~-~~~~I~~TRKT~Pg~ 136 (284)
T PRK06096 106 VSDYLAQMLALLRERY-PDGNIACTRKAIPGT 136 (284)
T ss_pred HHHHHHHHHHHHHhhC-CCcEEEecCcCCCch
Confidence 6778888999887532 112699999999984
No 27
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=44.24 E-value=94 Score=27.52 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 327 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 327 ~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
.......+..+|.+|+++.... | +.....+.++.+.. .+.|+|||++-
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~-----g-------~~~~~~~~l~~~~~-~~~p~ivvlNK 131 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAND-----G-------IQPQTEEHLKILRE-LGIPIIVVLNK 131 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTT-----B-------STHHHHHHHHHHHH-TT-SEEEEEET
T ss_pred eecccceecccccceeeeeccc-----c-------cccccccccccccc-cccceEEeeee
Confidence 3455667889999999986421 1 34445667777665 56888888774
No 28
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.00 E-value=3.1e+02 Score=26.65 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeecccccc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTAY 69 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~ 69 (431)
++.+++.|++-+.+. .-.|++|=|++||.
T Consensus 118 IAT~T~~~V~~~~~~---~~~i~~TRKT~PG~ 146 (290)
T PRK06559 118 IASMTAAYVEALGDD---RIKVFDTRKTTPNL 146 (290)
T ss_pred HHHHHHHHHHHhcCC---CeEEEeecCCCCcc
Confidence 567778888888432 12689999999984
No 29
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=43.75 E-value=16 Score=37.80 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|.. .++|.+|.++- ..- +++.+.+.+..+++.++++. +||.|+.
T Consensus 172 e~~kdaDiVVitAG~p---rkpG~tR~dLl--~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKP---RGPGMERADLL--DINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCC---CCCCCCHHHHH--HHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHH
Confidence 4678999999887643 24555554321 112 23344555422335555545 5998773
No 30
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=43.39 E-value=41 Score=36.53 Aligned_cols=48 Identities=25% Similarity=0.222 Sum_probs=34.6
Q ss_pred HhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcCCCccCc
Q 014083 133 TIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCG 181 (431)
Q Consensus 133 ~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG~D~~~~ 181 (431)
=|++=+||+|.|+||.++-+-.... ....++++.+.---.-|.|+.|.
T Consensus 73 GlH~f~~w~g~ilTDSGgfQv~s~g-~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 73 GIHSLIGFDGPIMTDSGSFQLSVYG-DVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred ChHHHhCCCCCeEecCCceeeeecC-ccccCHHHHHHHHHHhCCCEEEE
Confidence 3567789999999999987755433 23457777655555679999874
No 31
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=43.20 E-value=35 Score=21.36 Aligned_cols=25 Identities=12% Similarity=0.015 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhcC
Q 014083 194 GGLLREEDVNLALAYTITVQMRLGM 218 (431)
Q Consensus 194 ~g~~~~~~l~~av~ril~~k~~~gl 218 (431)
.|.|+.+.+-+++.||...+.+.|-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngR 26 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGR 26 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999988764
No 32
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.09 E-value=20 Score=35.37 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH--HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ--QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q--~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+.+|+||++.|... .++.+|..+.-.... +++.+.+.+..+...++++.+ ||+|+.
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~~ 134 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANTN 134 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHHH
Confidence 45678999999877532 233343221111111 334455555433355655554 999763
No 33
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=42.87 E-value=31 Score=35.01 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCCCEEEEEeC-CceeeecCcCC-------CCCccEEEEccCcchhhHHHHHHHhhcC
Q 014083 367 QELVSRVAKASRGPVVLVLMC-GGPVDVSFAKN-------DPRIGAILWVGYPGQAGGAAIADVLFGR 426 (431)
Q Consensus 367 ~~li~~l~~~~~~pvVvV~~~-g~P~~l~~~~~-------~~~v~ail~~~~~g~~~g~A~advL~G~ 426 (431)
+++|+.+.+.+++||++|..| |+++...++.. ...|+.+|...-|-.-+.+|+..+++|+
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~ 174 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD 174 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence 355666655567899999887 56655432221 1358898887766556778898888887
No 34
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=42.65 E-value=20 Score=35.40 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|.||++.|... .+|.+|.++ -..- +++.+.+.+..++..++++. +||+|+.
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~l--l~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv~ 131 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDL--LSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANTN 131 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHH
Confidence 56788999998877532 233333221 1122 23444555542345666655 4999873
No 35
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=42.47 E-value=26 Score=34.40 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~----~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+..+.+|+||++.|... ++|.+|.++ -.... +..+.+.+.+ ...++++. .||.|.
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~~-p~~iiivv-sNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAESC-PKAMILVI-TNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHhC-CCeEEEEe-cCchhh
Confidence 46789999999888532 345555432 22222 3344555443 34555545 599984
No 36
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=42.33 E-value=2.5e+02 Score=27.07 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeeccccccCCCCCCCCCccccccccCHHHHHhhhcHHHHHHHHhCC--------cc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGK--------VA 109 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~g~~~~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~~g~--------~~ 109 (431)
++.+.+.||+-+.+.. -.|++|=|--||- |-++ |.++..|+ -+
T Consensus 109 IAT~T~~~V~~~~~~~---~~i~~TRKT~Pgl-------------------R~le-------KyAV~~GGG~nHR~gLsD 159 (280)
T COG0157 109 IATATARMVEALRGTN---VRIADTRKTTPGL-------------------RLLE-------KYAVRAGGGDNHRFGLSD 159 (280)
T ss_pred HHHHHHHHHHHhhccC---cEEEeccCCCccH-------------------HHHH-------HHHHHhcCCccccCCCcc
Confidence 5667777787777762 2477787877762 2222 34555554 24
Q ss_pred eEeecccccCCccCcCC-HHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcCCCccCchhh-HHH
Q 014083 110 SVMCSYNQVNGKPTCAD-PDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLDCGPFL-AIH 187 (431)
Q Consensus 110 ~vM~sy~~v~g~pa~~s-~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG~D~~~~~~~-~~~ 187 (431)
+||.--|.+. ++.| ...+ .-+|...+|.--|--. ..+. +-+.+|+.||.|++|...+ .+.
T Consensus 160 avliKDNHia---~~g~i~~Av-~~aR~~~~~~~kIEVE-------------vesl-e~~~eAl~agaDiImLDNm~~e~ 221 (280)
T COG0157 160 AVLIKDNHIA---AAGSITEAV-RRARAAAPFTKKIEVE-------------VESL-EEAEEALEAGADIIMLDNMSPEE 221 (280)
T ss_pred eEEehhhHHH---HhccHHHHH-HHHHHhCCCCceEEEE-------------cCCH-HHHHHHHHcCCCEEEecCCCHHH
Confidence 5666533332 2222 2233 3466677774311111 1233 4578999999999985432 334
Q ss_pred HHHHH
Q 014083 188 TEGAV 192 (431)
Q Consensus 188 l~~av 192 (431)
+++++
T Consensus 222 ~~~av 226 (280)
T COG0157 222 LKEAV 226 (280)
T ss_pred HHHHH
Confidence 44443
No 37
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=41.20 E-value=23 Score=34.77 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=33.4
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCC-h-hHHHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP-G-RQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~-~-~q~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|... ++|.+|.+|--. . =..++.+++.+.+. +.++++. +||+|+.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~-d~ivlVv-tNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAP-DAIVLVV-TNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCC-CeEEEEe-cCcHHHH
Confidence 45789999999887543 555555432100 0 12344556665443 4555555 4999873
No 38
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=40.51 E-value=18 Score=35.18 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCCh--hHHHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~--~q~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|++|++.|... .+|.+|.++-... --+++.+.+.+.+ .+.++++. +||.++.
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~-sNP~d~~ 121 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVV-SNPVDIL 121 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc-cChHHHH
Confidence 46899999999988643 3455553322110 1133444555543 34555544 5998763
No 39
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=40.34 E-value=70 Score=28.16 Aligned_cols=55 Identities=20% Similarity=0.070 Sum_probs=36.0
Q ss_pred ccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHH--hhCCCCEEEEEeCCce
Q 014083 325 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA--KASRGPVVLVLMCGGP 390 (431)
Q Consensus 325 ~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~--~~~~~pvVvV~~~g~P 390 (431)
.+..+..+...+||.+|++.=+ + +...|..=+.+|..+. .-.+||++++..+|++
T Consensus 57 ~~~~~~~~~i~~AD~iIi~tP~---Y--------~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~~ 113 (174)
T TIGR03566 57 PDAERILQAIESADLLVVGSPV---Y--------RGSYTGLFKHLFDLVDPNALIGKPVLLAATGGSE 113 (174)
T ss_pred HHHHHHHHHHHHCCEEEEECCc---C--------cCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCCc
Confidence 4466777888999998875422 2 3456666677777653 1246888887666554
No 40
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=38.94 E-value=1.1e+02 Score=31.65 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=34.6
Q ss_pred cCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceee
Q 014083 336 QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 392 (431)
Q Consensus 336 ~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~ 392 (431)
.+|..||++.. +.-.|.+.-.....+.++|+.|.+ .+||.|+|+|+..|+.
T Consensus 144 hstIgivVtTD-----gsi~dI~Re~y~~aEe~~i~eLk~-~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 144 HSTIGVVVTTD-----GTITDIPREDYVEAEERVIEELKE-LNKPFIILLNSTHPYH 194 (492)
T ss_pred cCcEEEEEEcC-----CCccccccccchHHHHHHHHHHHh-cCCCEEEEEECcCCCC
Confidence 78888887631 111111111245668899999987 5799999999989883
No 41
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=38.56 E-value=1.5e+02 Score=26.23 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=26.2
Q ss_pred hcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 335 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 335 ~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
..+|.++|.+| .+.|..++.......+.+ | ++..|..+|.
T Consensus 98 ~~pdiv~vglG-----------------~PkQE~~~~~~~~~l~~~-v-~~~vG~~~d~ 137 (171)
T cd06533 98 SGADILFVGLG-----------------APKQELWIARHKDRLPVP-V-AIGVGGSFDF 137 (171)
T ss_pred cCCCEEEEECC-----------------CCHHHHHHHHHHHHCCCC-E-EEEeceeeEe
Confidence 45788888776 346889999988765433 3 3344666765
No 42
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.53 E-value=30 Score=33.92 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHH----HHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~l----i~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|... ++|.+|..+.|-..-.++ +..+.+.. .+.++++. .||.|+.
T Consensus 64 ~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~~-p~~i~ivv-sNPvDv~ 125 (307)
T cd05290 64 DDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKVT-KEAVIILI-TNPLDIA 125 (307)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe-cCcHHHH
Confidence 56789999999887532 233332112222223333 44555433 34555545 5998873
No 43
>PRK13556 azoreductase; Provisional
Probab=37.83 E-value=1e+02 Score=28.04 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhh---------------CCCCEEEEEeCCcee
Q 014083 327 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA---------------SRGPVVLVLMCGGPV 391 (431)
Q Consensus 327 ~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~---------------~~~pvVvV~~~g~P~ 391 (431)
..+..+..+.||.+|++. |.+ ++.+|..=+.+|..+... .+|+++++..+|+++
T Consensus 80 ~~~~~~~l~~AD~iVi~~---P~y--------n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~ 148 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAF---PLW--------NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVY 148 (208)
T ss_pred HHHHHHHHHHCCEEEEec---ccc--------ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCC
Confidence 345567788999998864 222 456777667777776531 357777777777765
No 44
>PRK13555 azoreductase; Provisional
Probab=37.47 E-value=93 Score=28.57 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhh---------------CCCCEEEEEeCCcee
Q 014083 327 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA---------------SRGPVVLVLMCGGPV 391 (431)
Q Consensus 327 ~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~---------------~~~pvVvV~~~g~P~ 391 (431)
..+..+....||.+|++. +.+ ++.+|..=+.+|..+... .+||++|+..+|+||
T Consensus 80 ~~~~~~~~~~AD~lvi~~---P~~--------n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~ 148 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAF---PLW--------NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDY 148 (208)
T ss_pred HHHHHHHHHHcCEEEEEc---Ccc--------cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCC
Confidence 345667788999988764 222 455666666666655421 357788777767765
No 45
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.84 E-value=27 Score=34.26 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=31.0
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+..+.+|+||++.|... ++|.+|.++ -..- .++++.+.+.+ ...++++. .||.|.
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~-p~a~vivv-tNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDL--FNINAGIVRDLATAVAKAC-PKALILII-SNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCeEEEEc-cCchhh
Confidence 56789999999887532 234444322 1222 23344555543 34555545 599987
No 46
>PLN02602 lactate dehydrogenase
Probab=36.79 E-value=25 Score=35.22 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~----~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|... ++|.+|.++ -..-. ++++.+.+.+. +.++++.+ ||.++.
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dl--l~~N~~I~~~i~~~I~~~~p-~~ivivvt-NPvdv~ 160 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNL--LQRNVALFRKIIPELAKYSP-DTILLIVS-NPVDVL 160 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCC-CeEEEEec-CchHHH
Confidence 34789999999887532 345555332 12222 33445555433 45555554 998763
No 47
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=36.20 E-value=1.2e+02 Score=27.69 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=36.8
Q ss_pred HHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhh---------------CCCCEEEEEeCCceee
Q 014083 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA---------------SRGPVVLVLMCGGPVD 392 (431)
Q Consensus 328 ~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~---------------~~~pvVvV~~~g~P~~ 392 (431)
++.++....||.+|+..-. -|+.+|..=+..|..++.+ .+|+++++...|++|.
T Consensus 79 d~l~~ef~aAD~vVi~~PM-----------~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~ 147 (202)
T COG1182 79 DKLLEEFLAADKVVIAAPM-----------YNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYS 147 (202)
T ss_pred HHHHHHHHhcCeEEEEecc-----------cccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCC
Confidence 3445667788998876532 2788999889999887632 2366776666666664
No 48
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.12 E-value=1.1e+02 Score=29.84 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=28.8
Q ss_pred cccHHHHHHHhh------cCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEE
Q 014083 324 NQLIGAAEVAAR------QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVL 383 (431)
Q Consensus 324 ~~~~~~~~~~a~------~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVv 383 (431)
...+-++++.+. ..|++|++=|. +...+|. +-++.+++++++. +..|||.
T Consensus 57 ~~~I~~al~~~~~~~~~~~~Dviii~RGG--------Gs~eDL~-~FN~e~varai~~-~~~Pvis 112 (319)
T PF02601_consen 57 AASIVSALRKANEMGQADDFDVIIIIRGG--------GSIEDLW-AFNDEEVARAIAA-SPIPVIS 112 (319)
T ss_pred HHHHHHHHHHHHhccccccccEEEEecCC--------CChHHhc-ccChHHHHHHHHh-CCCCEEE
Confidence 344555555554 36777765332 2222332 3357889999986 6788653
No 49
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=35.91 E-value=82 Score=25.25 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 014083 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 386 (431)
Q Consensus 328 ~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~ 386 (431)
....+....+|.+|+++.... .+.....++++.+. .++|+++|++
T Consensus 71 ~~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 71 RKFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 345566688899999985321 12244567888884 4678888875
No 50
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=35.78 E-value=1.4e+02 Score=26.65 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=14.2
Q ss_pred CCCCcCCCCCeEEEECCCC
Q 014083 262 TLPLSTLRHHTVAVIGPNS 280 (431)
Q Consensus 262 ~LPL~~~~~~kiavig~~a 280 (431)
.||+......+|.++|.+-
T Consensus 2 ~~~~~~~~~~~iv~~GDSi 20 (191)
T PRK10528 2 LLTFRAAAADTLLILGDSL 20 (191)
T ss_pred ccccccCCCCEEEEEeCch
Confidence 4787766667999999543
No 51
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=35.70 E-value=27 Score=34.15 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=29.7
Q ss_pred hhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHH----HHHHhhCCCCEEEEEeCCceeeec
Q 014083 334 ARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELV----SRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 334 a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li----~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
.+.+|.+|++.|... ++|.+|.+ |-....+++ +.+.+.. .+.++++. .||.++.
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~--l~~~N~~iv~~i~~~I~~~~-p~~~iIv~-tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSRED--LLSMNAGIVREVTGRIMEHS-PNPIIVVV-SNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHH--HHHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCcHHHH
Confidence 688999999988643 23333322 222333344 4455443 34455545 4998873
No 52
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=34.72 E-value=70 Score=27.99 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=27.3
Q ss_pred hcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 335 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 335 ~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
.+.|++|+++..+ + ......|..++.+ .++|+|+|++-
T Consensus 77 ~~~D~ii~VvDa~-----------~---l~r~l~l~~ql~e-~g~P~vvvlN~ 114 (156)
T PF02421_consen 77 EKPDLIIVVVDAT-----------N---LERNLYLTLQLLE-LGIPVVVVLNK 114 (156)
T ss_dssp TSSSEEEEEEEGG-----------G---HHHHHHHHHHHHH-TTSSEEEEEET
T ss_pred cCCCEEEEECCCC-----------C---HHHHHHHHHHHHH-cCCCEEEEEeC
Confidence 5789999988532 1 2345677788876 67999999874
No 53
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=34.47 E-value=8.2 Score=33.09 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=28.4
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHH----HHHHHhhCCCCEEEEEeCCceeee
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQEL----VSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~l----i~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+..+++|++|++.|.. ..+|.+|.++ -....++ .+.+.+.+. +.++++. .||.|+
T Consensus 65 ~~~~~aDivvitag~~---~~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p-~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVP---RKPGMSRLDL--LEANAKIVKEIAKKIAKYAP-DAIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTS---SSTTSSHHHH--HHHHHHHHHHHHHHHHHHST-TSEEEE--SSSHHH
T ss_pred cccccccEEEEecccc---ccccccHHHH--HHHhHhHHHHHHHHHHHhCC-ccEEEEe-CCcHHH
Confidence 3468899998876643 2344444222 1222333 344554443 3344444 499986
No 54
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=34.33 E-value=94 Score=26.36 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=36.4
Q ss_pred CcccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHH-----hhCCCCEEEEEeCCc
Q 014083 323 GNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLMCGG 389 (431)
Q Consensus 323 ~~~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~-----~~~~~pvVvV~~~g~ 389 (431)
..+++++..+...+||.+|++.=.+ ....++.=+.+++.+. .-.+|+++++..+++
T Consensus 57 ~~d~~~~~~~~l~~aD~iI~~sP~y-----------~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~ 117 (152)
T PF03358_consen 57 IPDDVQELYDKLKEADGIIFASPVY-----------NGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGG 117 (152)
T ss_dssp TSHHHHHHHHHHHHSSEEEEEEEEB-----------TTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESS
T ss_pred CcHHHHHHHhceecCCeEEEeecEE-----------cCcCChhhhHHHHHhccccccccCCCEEEEEEEecC
Confidence 3567788889999999999865322 2345666688888885 124566666655433
No 55
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=34.15 E-value=41 Score=32.95 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=29.9
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~--~~q~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+..+.+|++|++.|... ++|.+|.++-.. .--.+.++.+.+... ..++++. +||+++
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~-~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVV-TNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCchHH
Confidence 35899999999988643 344444222000 001233444544333 4444445 499875
No 56
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=34.06 E-value=39 Score=20.83 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.0
Q ss_pred HHHHHHHhCCcceEeeccc
Q 014083 98 PFKACVVEGKVASVMCSYN 116 (431)
Q Consensus 98 pF~~~i~~g~~~~vM~sy~ 116 (431)
-|+.++..| ++.||+-|.
T Consensus 12 ~~~~~l~~G-VDgI~Td~p 29 (30)
T PF13653_consen 12 SWRELLDLG-VDGIMTDYP 29 (30)
T ss_dssp HHHHHHHHT--SEEEES-H
T ss_pred HHHHHHHcC-CCEeeCCCC
Confidence 468889988 999999663
No 57
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=34.05 E-value=61 Score=32.71 Aligned_cols=75 Identities=12% Similarity=-0.001 Sum_probs=44.0
Q ss_pred hhhhcCCCcEEECCchhhhhhhcc------------------------------------ccccCChHHHHHHHHHcCCC
Q 014083 134 IHGQWRLDGYIVSDCDSVGVLYNT------------------------------------QHYTRTPEEAAADAIKAGLD 177 (431)
Q Consensus 134 LR~~~gf~G~v~sD~~~~~~~~~~------------------------------------~~~~~~~~~~~~~al~AG~D 177 (431)
|.+=+||+|.|+||.+.-+..+-. .+...++++.+.---.-|.|
T Consensus 76 lH~fm~w~gpilTDSGgfQv~SL~~~~v~~~~~~~~~~~~~~~~~~i~e~Gv~F~s~~dG~~~~ltPe~~i~~Q~~iGsD 155 (372)
T PRK01008 76 LHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDEGVWFKSYRDGRKLFLSPEISVQAQKDLGAD 155 (372)
T ss_pred HHHHhCCCCcccccCcceeEEEeccccchhhhccccccccccccceecCCCeEEecCCCCCceeeCHHHHHHHHHHHCCC
Confidence 456789999999997654431100 11114565555544557888
Q ss_pred ccCchhhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014083 178 LDCGPFLAIHTEGAVRGGLLREEDVNLALAYTITVQMR 215 (431)
Q Consensus 178 ~~~~~~~~~~l~~av~~g~~~~~~l~~av~ril~~k~~ 215 (431)
+.|.-.. +-.-..+.+++.+|+.|-+++-.+
T Consensus 156 I~m~LDe-------~~~~~~~~~~~~~sv~rT~rW~~r 186 (372)
T PRK01008 156 IIIPLDE-------LLPFHADPTYFLQSCQRTYVWEKR 186 (372)
T ss_pred EEEEccc-------cCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8774110 111135677888888887776544
No 58
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.76 E-value=1.2e+02 Score=26.82 Aligned_cols=50 Identities=18% Similarity=0.235 Sum_probs=30.6
Q ss_pred ccHHHHHHHhh--cCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 325 QLIGAAEVAAR--QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 325 ~~~~~~~~~a~--~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
.+.++.++.+. .+|.++|.+| .+.|..++.......+.+ | ++..|..++.
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG-----------------~PkQE~~~~~~~~~l~~~-v-~i~vG~~~d~ 139 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLG-----------------APKQERWIARHRQRLPAG-V-IIGVGGAFDF 139 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECC-----------------CCHHHHHHHHHHHHCCCC-E-EEEECchhhh
Confidence 34455555544 5677776665 345888999888766544 3 3344666654
No 59
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=33.76 E-value=26 Score=34.18 Aligned_cols=55 Identities=27% Similarity=0.378 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+..+++|+||++.|... ++|.+|.++ -..- +++.+.+.+. +...++++. +||.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~-~p~~~vivv-sNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKS-GFDGIFLVA-TNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHh-CCCeEEEEe-CCHHHH
Confidence 46789999999877532 345555332 1222 2344455553 334555545 599876
No 60
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=33.48 E-value=4.7e+02 Score=25.65 Aligned_cols=27 Identities=4% Similarity=-0.028 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeecccccc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTAY 69 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~ 69 (431)
++.+++.|++-+... .|+.|=|.+||.
T Consensus 123 IAT~T~~~V~~~~~~-----~I~~TRKT~PGl 149 (308)
T PLN02716 123 IATLTKAMADAAKPA-----CILETRKTAPGL 149 (308)
T ss_pred HHHHHHHHHHHhCcC-----EEeeecCCCCcc
Confidence 677888888888744 699999999984
No 61
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=33.19 E-value=2.9e+02 Score=23.80 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceeeec-----------C
Q 014083 327 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS-----------F 395 (431)
Q Consensus 327 ~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l~-----------~ 395 (431)
.......+.++|+|+++...+.. ...+|++- +..+++|||-|+.- .|+. |
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~---------~~~~pP~f-------a~~f~~pvIGVITK---~Dl~~~~~~i~~a~~~ 114 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEP---------RSVFPPGF-------ASMFNKPVIGVITK---IDLPSDDANIERAKKW 114 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCC---------CccCCchh-------hcccCCCEEEEEEC---ccCccchhhHHHHHHH
Confidence 45566778899999988753321 12234322 12345788877653 2332 2
Q ss_pred cCCCCCccEEEEccCcchhhHHHHHHHh
Q 014083 396 AKNDPRIGAILWVGYPGQAGGAAIADVL 423 (431)
Q Consensus 396 ~~~~~~v~ail~~~~~g~~~g~A~advL 423 (431)
+. ...++-+........+|-+.+.+.|
T Consensus 115 L~-~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 115 LK-NAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred HH-HcCCCCeEEEECCCCcCHHHHHHHH
Confidence 22 1244555555555556666666655
No 62
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=32.74 E-value=1.3e+02 Score=28.86 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=39.8
Q ss_pred HHHHHHHhCCcceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHH--HHHHHHHcC
Q 014083 98 PFKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEE--AAADAIKAG 175 (431)
Q Consensus 98 pF~~~i~~g~~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~--~~~~al~AG 175 (431)
-|++.-++|..-.++++|... +-.+=++.|||.+.+.|++.|..+--......+..+ ...+++..|
T Consensus 6 ~~~~~~~~g~~i~m~tayD~~------------sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg 73 (263)
T TIGR00222 6 SLLQKKKQEEKIVAITAYDYS------------FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRG 73 (263)
T ss_pred HHHHHHhCCCcEEEEeccCHH------------HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhh
Confidence 355555666444444555442 233446899999999999999766432221234444 456777788
No 63
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=32.10 E-value=67 Score=33.06 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=25.0
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 363 PGRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 363 ~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
-..+.+.|++|.+ -+||.||++|+..|+.-
T Consensus 166 ~eAEervI~ELk~-igKPFvillNs~~P~s~ 195 (492)
T PF09547_consen 166 VEAEERVIEELKE-IGKPFVILLNSTKPYSE 195 (492)
T ss_pred HHHHHHHHHHHHH-hCCCEEEEEeCCCCCCH
Confidence 3457788999986 68999999999999864
No 64
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=31.70 E-value=92 Score=30.11 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 328 ~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+...+.+.+.|++||+-|.+++ +..+| .++++..++|..+| .+|=+++
T Consensus 204 ~Avk~la~~~Dl~iVVG~~nSS---------------Ns~rL-~eiA~~~g~~aylI---d~~~ei~ 251 (294)
T COG0761 204 DAVKELAPEVDLVIVVGSKNSS---------------NSNRL-AEIAKRHGKPAYLI---DDAEEID 251 (294)
T ss_pred HHHHHHhhcCCEEEEECCCCCc---------------cHHHH-HHHHHHhCCCeEEe---CChHhCC
Confidence 4446788899999986443321 12334 44444456688766 3555554
No 65
>PRK05086 malate dehydrogenase; Provisional
Probab=31.28 E-value=40 Score=33.09 Aligned_cols=56 Identities=25% Similarity=0.364 Sum_probs=30.8
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCCh---hHHHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~---~q~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+..+++|+||++.|... +++.+|.++ +.. --.++++.+.+.+ .+.++++. .||.|.
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~~-~~~ivivv-sNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKTC-PKACIGII-TNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHhC-CCeEEEEc-cCchHH
Confidence 45678999999988642 233333322 111 2245566666543 33444444 599964
No 66
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.13 E-value=4.9e+02 Score=25.05 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeecccccc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTAY 69 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~ 69 (431)
++.+++.|++-+.+. +-.|++|=|.+||.
T Consensus 103 IAT~t~~~v~~~~~~---~~~i~~TRKt~Pg~ 131 (273)
T PRK05848 103 IATLTSRYVEALESH---KVKLLDTRKTRPLL 131 (273)
T ss_pred HHHHHHHHHHHhcCC---CeEEEecCCCCcch
Confidence 566777788777653 12588899999984
No 67
>COG1159 Era GTPase [General function prediction only]
Probab=30.59 E-value=1.5e+02 Score=28.90 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=30.6
Q ss_pred HHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 328 ~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
..+.+.++++|++++++-.+. .+.+.....++.+.+ .+.|+|++++-
T Consensus 77 ~~a~~sl~dvDlilfvvd~~~------------~~~~~d~~il~~lk~-~~~pvil~iNK 123 (298)
T COG1159 77 KAARSALKDVDLILFVVDADE------------GWGPGDEFILEQLKK-TKTPVILVVNK 123 (298)
T ss_pred HHHHHHhccCcEEEEEEeccc------------cCCccHHHHHHHHhh-cCCCeEEEEEc
Confidence 456677889999999985432 123345556666665 45688888763
No 68
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=30.38 E-value=37 Score=33.12 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=30.4
Q ss_pred HhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 333 ~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~----~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
.++++|++|++.|... ++|.+|.++ -..-. ++.+.+.+.+. ..++++. +||.++.
T Consensus 65 ~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~~-~~~vivv-sNP~d~~ 123 (306)
T cd05291 65 DCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASGF-DGIFLVA-SNPVDVI 123 (306)
T ss_pred HhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEEEe-cChHHHH
Confidence 4689999999887532 345555322 12222 33344554332 4554444 5999763
No 69
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=30.23 E-value=2e+02 Score=23.78 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=26.5
Q ss_pred HHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 331 ~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
......+|.+|+++.... .....+.++++.+.. .++|+|+|++-
T Consensus 71 ~~~~~~~d~ii~v~d~~~------------~~~~~~~~~~~~~~~-~~~piiiv~nK 114 (157)
T cd01894 71 ELAIEEADVILFVVDGRE------------GLTPADEEIAKYLRK-SKKPVILVVNK 114 (157)
T ss_pred HHHHHhCCEEEEEEeccc------------cCCccHHHHHHHHHh-cCCCEEEEEEC
Confidence 345677899988875321 112234456666654 45788888664
No 70
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=30.22 E-value=48 Score=30.81 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHHHccCC------CCCCeeEEeeccccccCCCCCCCCCccccccccCHHHHHhhhcHHHHHHHHhC
Q 014083 33 EDPVLTGKYAASYVRGLQGNT------GSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEG 106 (431)
Q Consensus 33 eDp~lv~~~~~a~i~G~q~~~------~g~~gv~a~~KHfpg~g~~~~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~~g 106 (431)
.+|.-+.++-.+.+.+.+... .....++..---|-|- .++ +.+-+|+ -|+.+++..
T Consensus 104 ~sp~~~~~~l~~~l~~~~~E~f~vL~Ld~qnrlI~~e~lf~GT-------i~~----s~V~PRE-------I~k~Al~~n 165 (224)
T COG2003 104 TSPEAVAEYLRAELGGEEREHFVVLYLDSQNRLIATETLFIGT-------LNV----SEVHPRE-------IFKEALKYN 165 (224)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHhcCcCceecceeEEeee-------ccc----ceecHHH-------HHHHHHHhc
Confidence 378888888888777776653 0111343333333331 111 1223333 367888887
Q ss_pred CcceEeecccccCCccCc-CCHHHHHHHhhhhcCCCcEEECCchhh
Q 014083 107 KVASVMCSYNQVNGKPTC-ADPDILKNTIHGQWRLDGYIVSDCDSV 151 (431)
Q Consensus 107 ~~~~vM~sy~~v~g~pa~-~s~~~l~~~LR~~~gf~G~v~sD~~~~ 151 (431)
+.+||.+||.=.|.|.- .....+|.-|.+-.++-|+.+-|-.-+
T Consensus 166 -AaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 166 -AAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred -chhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 78999999998775432 334457899999999999888886543
No 71
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=29.19 E-value=1.7e+02 Score=27.48 Aligned_cols=65 Identities=26% Similarity=0.242 Sum_probs=44.4
Q ss_pred HHHHHhCCcceEeecccccC-CccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcCCCc
Q 014083 100 KACVVEGKVASVMCSYNQVN-GKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDL 178 (431)
Q Consensus 100 ~~~i~~g~~~~vM~sy~~v~-g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG~D~ 178 (431)
|++.+.| +.+||.--..|. |.. -.|++-| .+++++. +--||-|.+- .++.+ +..+++-|+|=
T Consensus 145 rrLee~G-caavMPl~aPIGSg~G-~~n~~~l-~iiie~a--~VPviVDAGi-----------G~pSd-Aa~aMElG~Da 207 (262)
T COG2022 145 RRLEEAG-CAAVMPLGAPIGSGLG-LQNPYNL-EIIIEEA--DVPVIVDAGI-----------GTPSD-AAQAMELGADA 207 (262)
T ss_pred HHHHhcC-ceEeccccccccCCcC-cCCHHHH-HHHHHhC--CCCEEEeCCC-----------CChhH-HHHHHhcccce
Confidence 5666666 889999766663 332 3477777 6888885 6667778642 13333 67889999998
Q ss_pred cCc
Q 014083 179 DCG 181 (431)
Q Consensus 179 ~~~ 181 (431)
++.
T Consensus 208 VL~ 210 (262)
T COG2022 208 VLL 210 (262)
T ss_pred eeh
Confidence 875
No 72
>PRK00170 azoreductase; Reviewed
Probab=28.72 E-value=1.3e+02 Score=26.82 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=34.8
Q ss_pred cHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHh---------------hCCCCEEEEEeCCce
Q 014083 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK---------------ASRGPVVLVLMCGGP 390 (431)
Q Consensus 326 ~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~---------------~~~~pvVvV~~~g~P 390 (431)
+..+..+....||.+|++. |.+ ++.+|..-+.+|+.+.. ..+|++++|..+|++
T Consensus 76 ~~~~l~~~i~~AD~iV~~s---P~y--------~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~ 144 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAA---PMY--------NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGI 144 (201)
T ss_pred HHHHHHHHHHHCCEEEEee---ccc--------ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCC
Confidence 4456677888999999864 211 45567766777777631 135777777766654
No 73
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=28.30 E-value=93 Score=29.24 Aligned_cols=67 Identities=25% Similarity=0.203 Sum_probs=41.8
Q ss_pred HHHHHHhCCcceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcCCCc
Q 014083 99 FKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDL 178 (431)
Q Consensus 99 F~~~i~~g~~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG~D~ 178 (431)
.|++.+.| +.+||+--..|.-----.|++.| .+++++. +--||-|.+- .++.+ +..|++-|+|=
T Consensus 137 akrL~d~G-caavMPlgsPIGSg~Gi~n~~~l-~~i~~~~--~vPvIvDAGi-----------G~pSd-aa~AMElG~da 200 (247)
T PF05690_consen 137 AKRLEDAG-CAAVMPLGSPIGSGRGIQNPYNL-RIIIERA--DVPVIVDAGI-----------GTPSD-AAQAMELGADA 200 (247)
T ss_dssp HHHHHHTT--SEBEEBSSSTTT---SSTHHHH-HHHHHHG--SSSBEEES--------------SHHH-HHHHHHTT-SE
T ss_pred HHHHHHCC-CCEEEecccccccCcCCCCHHHH-HHHHHhc--CCcEEEeCCC-----------CCHHH-HHHHHHcCCce
Confidence 37888887 88999977777322333467777 5778887 4445557531 13333 68899999998
Q ss_pred cCc
Q 014083 179 DCG 181 (431)
Q Consensus 179 ~~~ 181 (431)
++.
T Consensus 201 VLv 203 (247)
T PF05690_consen 201 VLV 203 (247)
T ss_dssp EEE
T ss_pred eeh
Confidence 875
No 74
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=27.65 E-value=5.4e+02 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=6.7
Q ss_pred hcCCCcEEECCchhh
Q 014083 137 QWRLDGYIVSDCDSV 151 (431)
Q Consensus 137 ~~gf~G~v~sD~~~~ 151 (431)
+.||+.+.++|++.|
T Consensus 30 ~aG~d~i~vGds~~~ 44 (254)
T cd06557 30 EAGVDVILVGDSLGM 44 (254)
T ss_pred HcCCCEEEECHHHHH
Confidence 344444444444443
No 75
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=27.41 E-value=2.4e+02 Score=25.36 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=6.8
Q ss_pred HHhhcCCEEEEEee
Q 014083 332 VAARQADATVLVMG 345 (431)
Q Consensus 332 ~~a~~aD~vIv~~g 345 (431)
..+..+|.+|+++.
T Consensus 84 ~~~~~~D~~ilVvd 97 (195)
T cd01884 84 TGAAQMDGAILVVS 97 (195)
T ss_pred HHhhhCCEEEEEEE
Confidence 33444555555543
No 76
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=26.85 E-value=1e+02 Score=21.70 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 014083 185 AIHTEGAVRGGLLREEDVNLALAYTITVQMR 215 (431)
Q Consensus 185 ~~~l~~av~~g~~~~~~l~~av~ril~~k~~ 215 (431)
.+.|..++..|.++.+..++-+.+++..+..
T Consensus 12 ~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~ 42 (53)
T PF08044_consen 12 VDLLRAAFAEGRLSLDEFDERLDAAYAARTR 42 (53)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHhcCcH
Confidence 4678899999999999999999999887655
No 77
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=26.11 E-value=1.6e+02 Score=25.19 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=10.3
Q ss_pred HHhhcCCEEEEEee
Q 014083 332 VAARQADATVLVMG 345 (431)
Q Consensus 332 ~~a~~aD~vIv~~g 345 (431)
+.++++|++++++-
T Consensus 4 ~~l~~aD~il~VvD 17 (157)
T cd01858 4 KVIDSSDVVIQVLD 17 (157)
T ss_pred HhhhhCCEEEEEEE
Confidence 45678888888774
No 78
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=26.07 E-value=52 Score=32.34 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHH----HHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~----~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+..+++|+||++.|... ++|.+|.++ -..-. ++++.+.+.+. ..++++. +||.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dl--l~~N~~i~~~i~~~i~~~~~-~~~vivv-sNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDL--VEKNLKIFKSIVGEVMASGF-DGIFLVA-SNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CeEEEEc-cCcHHH
Confidence 45789999999877532 345455322 12222 33445554332 3454444 599876
No 79
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=25.90 E-value=1.7e+02 Score=28.84 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=44.0
Q ss_pred HHHHHhCCcceEeeccccc-CCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcCCCc
Q 014083 100 KACVVEGKVASVMCSYNQV-NGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDL 178 (431)
Q Consensus 100 ~~~i~~g~~~~vM~sy~~v-~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG~D~ 178 (431)
+++.+-| +.+||+--..| .|.+.+ +++.|+.+.. . .+--|+-|.+= +..+-+.+|++-|+|=
T Consensus 212 ~~l~~~g-~~avmPl~~pIGsg~gv~-~p~~i~~~~e-~--~~vpVivdAGI------------g~~sda~~AmelGadg 274 (326)
T PRK11840 212 KRLEDAG-AVAVMPLGAPIGSGLGIQ-NPYTIRLIVE-G--ATVPVLVDAGV------------GTASDAAVAMELGCDG 274 (326)
T ss_pred HHHHhcC-CEEEeeccccccCCCCCC-CHHHHHHHHH-c--CCCcEEEeCCC------------CCHHHHHHHHHcCCCE
Confidence 5666666 78899833333 667766 9999866554 4 55667777531 2345588999999998
Q ss_pred cCc
Q 014083 179 DCG 181 (431)
Q Consensus 179 ~~~ 181 (431)
.+.
T Consensus 275 VL~ 277 (326)
T PRK11840 275 VLM 277 (326)
T ss_pred EEE
Confidence 774
No 80
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.74 E-value=2.4e+02 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=24.6
Q ss_pred hcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 335 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 335 ~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
+.+|.++|.+| .+.|..++.......+. .|+ +-.|.-+|.
T Consensus 99 s~~dil~VglG-----------------~PkQE~~~~~~~~~~~~-~v~-~gvGg~fd~ 138 (177)
T TIGR00696 99 SGAGIVFVGLG-----------------CPKQEIWMRNHRHLKPD-AVM-IGVGGSFDV 138 (177)
T ss_pred cCCCEEEEEcC-----------------CcHhHHHHHHhHHhCCC-cEE-EEeceeeee
Confidence 45777777666 34588888887654433 333 344666665
No 81
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=25.73 E-value=4.7e+02 Score=25.95 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHHHHHhCCcceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHH--HHHHHHHcCC
Q 014083 99 FKACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEE--AAADAIKAGL 176 (431)
Q Consensus 99 F~~~i~~g~~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~--~~~~al~AG~ 176 (431)
|++.-+.|..-.++++|... +--+-++.|+|.+.|.|++.|..+........+..+ ...+++..|.
T Consensus 27 l~~~k~~g~kivmlTAyD~~------------sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga 94 (332)
T PLN02424 27 LRQKYRRGEPITMVTAYDYP------------SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGA 94 (332)
T ss_pred HHHHHhCCCcEEEEecCCHH------------HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccC
Confidence 55544556544555566542 233446899999999999998765322222233433 4566777776
Q ss_pred Cc
Q 014083 177 DL 178 (431)
Q Consensus 177 D~ 178 (431)
+.
T Consensus 95 ~~ 96 (332)
T PLN02424 95 NR 96 (332)
T ss_pred CC
Confidence 54
No 82
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=25.69 E-value=58 Score=31.58 Aligned_cols=56 Identities=20% Similarity=0.385 Sum_probs=30.9
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+.++++|.||+++|... .++.+|.. +-.+. .++++.+.+.+ .+-++++.+ ||.++.
T Consensus 62 ~~l~dADiVIit~g~p~---~~~~~r~e--~~~~n~~i~~~i~~~i~~~~-p~~~iIv~s-NP~di~ 121 (300)
T cd01339 62 EDIAGSDVVVITAGIPR---KPGMSRDD--LLGTNAKIVKEVAENIKKYA-PNAIVIVVT-NPLDVM 121 (300)
T ss_pred HHhCCCCEEEEecCCCC---CcCCCHHH--HHHHHHHHHHHHHHHHHHHC-CCeEEEEec-CcHHHH
Confidence 34789999999988542 23333321 11112 24445555544 345555554 999774
No 83
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=25.55 E-value=91 Score=31.45 Aligned_cols=75 Identities=17% Similarity=0.098 Sum_probs=45.6
Q ss_pred hhhhcCCCcEEECCchhhhhhhccc------------------cccCChHHHHHHHHHcCCCccCchhhHHHHHHHHhCC
Q 014083 134 IHGQWRLDGYIVSDCDSVGVLYNTQ------------------HYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGG 195 (431)
Q Consensus 134 LR~~~gf~G~v~sD~~~~~~~~~~~------------------~~~~~~~~~~~~al~AG~D~~~~~~~~~~l~~av~~g 195 (431)
|.+=+||+|.|+||.+....++-.. +...++++.+..--.-|.|+.|.-.. +-.-
T Consensus 74 lh~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~igsDI~m~LD~-------~~~~ 146 (368)
T TIGR00430 74 LHKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFKSPIDGSKIFLTPEKSMEIQYALGSDIIMAFDE-------CTPY 146 (368)
T ss_pred HHHHhCCCCceeeccCcceEEecCccccCCCCceEeecCCCCceEEEcHHHHHHHHHHhCCCEEEECCc-------CCCC
Confidence 4556789999999998765443211 12345666555555678898764211 1112
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 014083 196 LLREEDVNLALAYTITVQMR 215 (431)
Q Consensus 196 ~~~~~~l~~av~ril~~k~~ 215 (431)
..+.+++.+|+.|-+++-.+
T Consensus 147 ~~~~~~~~~av~rT~rW~~r 166 (368)
T TIGR00430 147 PADRDYAEKSTERTLRWAER 166 (368)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35567777777777776554
No 84
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=25.31 E-value=1.8e+02 Score=26.99 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=36.5
Q ss_pred cHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHh-------hCCCCEEEEEeCCce
Q 014083 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK-------ASRGPVVLVLMCGGP 390 (431)
Q Consensus 326 ~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~-------~~~~pvVvV~~~g~P 390 (431)
...+..+..+.+|.+|++.=++ +..+|+..++.|.-+.. ..+||+.++..+|+.
T Consensus 80 ~v~~l~~~v~~ADgvii~TPEY-----------n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~ 140 (219)
T TIGR02690 80 KVRELRQLSEWSEGQVWCSPER-----------HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS 140 (219)
T ss_pred HHHHHHHHHHhCCEEEEeCCcc-----------ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH
Confidence 3455567788899999875332 45678889999887753 136777776555443
No 85
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=25.00 E-value=2.3e+02 Score=26.99 Aligned_cols=66 Identities=17% Similarity=0.001 Sum_probs=44.5
Q ss_pred HHHHHhCCcceEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEECCchhhhhhhccccccCChHHHHHHHHHcCCCcc
Q 014083 100 KACVVEGKVASVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIVSDCDSVGVLYNTQHYTRTPEEAAADAIKAGLDLD 179 (431)
Q Consensus 100 ~~~i~~g~~~~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~sD~~~~~~~~~~~~~~~~~~~~~~~al~AG~D~~ 179 (431)
+++.+.| +.+||+--..|.-----.|++.| .+++++. +=-|+-|.+- +..+-+.+|++-|+|=.
T Consensus 152 ~rLed~G-c~aVMPlgsPIGSg~Gl~n~~~l-~~i~e~~--~vpVivdAGI------------gt~sDa~~AmElGaDgV 215 (267)
T CHL00162 152 KHLEDIG-CATVMPLGSPIGSGQGLQNLLNL-QIIIENA--KIPVIIDAGI------------GTPSEASQAMELGASGV 215 (267)
T ss_pred HHHHHcC-CeEEeeccCcccCCCCCCCHHHH-HHHHHcC--CCcEEEeCCc------------CCHHHHHHHHHcCCCEE
Confidence 7777777 88999976666221223477777 5777764 4557777431 23355789999999987
Q ss_pred Cc
Q 014083 180 CG 181 (431)
Q Consensus 180 ~~ 181 (431)
+.
T Consensus 216 L~ 217 (267)
T CHL00162 216 LL 217 (267)
T ss_pred ee
Confidence 74
No 86
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.80 E-value=5.3e+02 Score=25.02 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHccCCCCCCeeEEeecccccc
Q 014083 38 TGKYAASYVRGLQGNTGSRLKVAACCKHYTAY 69 (431)
Q Consensus 38 v~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~ 69 (431)
++.+++.|++-+.+. .-.|++|=|.+||.
T Consensus 117 IAT~T~~~v~~~~~~---~~~i~~TRKt~Pg~ 145 (288)
T PRK07428 117 IATLTRQYVEKIADL---PTQLVDTRKTTPGL 145 (288)
T ss_pred HHHHHHHHHHHhcCC---CeEEEecCCCCCcc
Confidence 677788888888442 22688999999984
No 87
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=24.79 E-value=2e+02 Score=27.25 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=26.6
Q ss_pred HHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 330 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 330 ~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
+...+..+|++++++..+. . ...+..+++.+.. .++|+|+|++-
T Consensus 73 ~~~~l~~aDvvl~VvD~~~------------~-~~~~~~i~~~l~~-~~~p~ilV~NK 116 (270)
T TIGR00436 73 ARSAIGGVDLILFVVDSDQ------------W-NGDGEFVLTKLQN-LKRPVVLTRNK 116 (270)
T ss_pred HHHHHhhCCEEEEEEECCC------------C-CchHHHHHHHHHh-cCCCEEEEEEC
Confidence 4456788999999885321 0 1112345555554 56798888764
No 88
>PRK12569 hypothetical protein; Provisional
Probab=24.62 E-value=2.1e+02 Score=27.09 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=32.4
Q ss_pred CcccHHHHHHHhhcCCEEEEEeeCCCC-cccccCCCCCCCCChhH
Q 014083 323 GNQLIGAAEVAARQADATVLVMGLDQS-IEAEFIDRAGLLLPGRQ 366 (431)
Q Consensus 323 ~~~~~~~~~~~a~~aD~vIv~~g~~~~-~~~eg~dr~~l~l~~~q 366 (431)
++....+.++.|++.++.| |-++. -..+|+-|..+.+++++
T Consensus 45 Dp~~M~~tv~lA~~~~V~I---GAHPsyPD~~gFGRr~m~~s~~e 86 (245)
T PRK12569 45 DPNIMRRTVELAKAHGVGI---GAHPGFRDLVGFGRRHINASPQE 86 (245)
T ss_pred CHHHHHHHHHHHHHcCCEe---ccCCCCCcCCCCCCCCCCCCHHH
Confidence 3566788899999988866 77664 46899999999999854
No 89
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=24.54 E-value=1.9e+02 Score=25.31 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=34.0
Q ss_pred cHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHH--hhCCCCEEEEEeCCce
Q 014083 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA--KASRGPVVLVLMCGGP 390 (431)
Q Consensus 326 ~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~--~~~~~pvVvV~~~g~P 390 (431)
...+..+...+||.+|++. |.+ +..+|..=+.+++.+. .-.+||+.++..+|.+
T Consensus 55 ~~~~l~~~i~~AD~iI~~s---P~Y--------~~sip~~LK~~iD~~~~~~l~~K~v~~~~~gg~~ 110 (171)
T TIGR03567 55 AIKAATAQVAQADGVVVAT---PVY--------KASYSGVLKALLDLLPQRALRGKVVLPIATGGSI 110 (171)
T ss_pred HHHHHHHHHHHCCEEEEEC---Ccc--------cCCCCHHHHHHHHhCChhhhCCCEEEEEEcCCch
Confidence 4567778888999998854 212 3456776677777653 1246777766554433
No 90
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=24.42 E-value=2e+02 Score=24.42 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=9.1
Q ss_pred HhhcCCEEEEEee
Q 014083 333 AARQADATVLVMG 345 (431)
Q Consensus 333 ~a~~aD~vIv~~g 345 (431)
..+++|++|+++.
T Consensus 9 i~~~aD~vl~V~D 21 (156)
T cd01859 9 IIKESDVVLEVLD 21 (156)
T ss_pred HHhhCCEEEEEee
Confidence 3456888888875
No 91
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=24.30 E-value=2.5e+02 Score=23.92 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 014083 328 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 386 (431)
Q Consensus 328 ~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~ 386 (431)
+-+.+.+..+|++|+++..+. .+...+.+++..........+|+|++
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~------------~~~~~~~~~l~~~~~~~~~~~i~V~n 166 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQ------------DLTESDMEFLKQMLDPDKSRTIFVLN 166 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTS------------TGGGHHHHHHHHHHTTTCSSEEEEEE
T ss_pred HHHHHhhccCCEEEEEeccCc------------ccchHHHHHHHHHhcCCCCeEEEEEc
Confidence 445566789999999885332 23334566666666545556777754
No 92
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.28 E-value=1.2e+02 Score=33.04 Aligned_cols=17 Identities=6% Similarity=0.219 Sum_probs=12.3
Q ss_pred cCCHHHHHHHhhhhcCC
Q 014083 124 CADPDILKNTIHGQWRL 140 (431)
Q Consensus 124 ~~s~~~l~~~LR~~~gf 140 (431)
.+-..+...+||+|..|
T Consensus 222 rlR~~lF~sil~QdiaF 238 (716)
T KOG0058|consen 222 RLRTDLFRSLLRQDIAF 238 (716)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 33445667889999987
No 93
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=23.98 E-value=46 Score=32.65 Aligned_cols=54 Identities=22% Similarity=0.406 Sum_probs=30.4
Q ss_pred HhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeee
Q 014083 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 393 (431)
Q Consensus 333 ~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l 393 (431)
..+++|+||++.|... .+|.+|.++ -..- +++++.+.+.+. +.++++. +||.++
T Consensus 68 ~~~~adivvitaG~~~---k~g~~R~dl--l~~N~~i~~~~~~~i~~~~p-~~~vivv-sNP~d~ 125 (312)
T cd05293 68 VTANSKVVIVTAGARQ---NEGESRLDL--VQRNVDIFKGIIPKLVKYSP-NAILLVV-SNPVDI 125 (312)
T ss_pred HhCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhCC-CcEEEEc-cChHHH
Confidence 4789999999887543 244454322 1222 334455555433 4454444 499976
No 94
>PLN00106 malate dehydrogenase
Probab=23.97 E-value=69 Score=31.66 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=30.9
Q ss_pred HHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChh---HHHHHHHHHhhCCCCEEEEEeCCceee
Q 014083 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGR---QQELVSRVAKASRGPVVLVLMCGGPVD 392 (431)
Q Consensus 331 ~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~---q~~li~~l~~~~~~pvVvV~~~g~P~~ 392 (431)
.+..+++|+||++.|... .+|.+|.++ |+.+ =.++++.+.+.+ ...|+++. .||.|
T Consensus 81 ~~~l~~aDiVVitAG~~~---~~g~~R~dl-l~~N~~i~~~i~~~i~~~~-p~aivivv-SNPvD 139 (323)
T PLN00106 81 GDALKGADLVIIPAGVPR---KPGMTRDDL-FNINAGIVKTLCEAVAKHC-PNALVNII-SNPVN 139 (323)
T ss_pred HHHcCCCCEEEEeCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCCcc
Confidence 356889999999877532 233333221 1111 134455566543 34555545 49998
No 95
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=23.54 E-value=1.6e+02 Score=25.61 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=15.1
Q ss_pred HHHHHHHhhcCCEEEEEeeC
Q 014083 327 IGAAEVAARQADATVLVMGL 346 (431)
Q Consensus 327 ~~~~~~~a~~aD~vIv~~g~ 346 (431)
+.++.+.++++|++++++..
T Consensus 10 ~~~~~~~i~~aD~il~v~D~ 29 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDA 29 (171)
T ss_pred HHHHHHHHhhCCEEEEEeec
Confidence 45667788899998888753
No 96
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=23.28 E-value=33 Score=15.47 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=4.1
Q ss_pred cCCCcE
Q 014083 138 WRLDGY 143 (431)
Q Consensus 138 ~gf~G~ 143 (431)
+||+|+
T Consensus 4 mgf~g~ 9 (10)
T PF08262_consen 4 MGFHGM 9 (10)
T ss_pred cccccc
Confidence 677774
No 97
>PF08853 DUF1823: Domain of unknown function (DUF1823); InterPro: IPR014952 These proteins are functionally uncharacterised. ; PDB: 2L1N_A.
Probab=23.17 E-value=26 Score=28.73 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=7.2
Q ss_pred HHHhhhhcCCCcEEE
Q 014083 131 KNTIHGQWRLDGYIV 145 (431)
Q Consensus 131 ~~~LR~~~gf~G~v~ 145 (431)
+++|+++|||+|+-|
T Consensus 78 KQlLKe~LgFkGYki 92 (116)
T PF08853_consen 78 KQLLKEQLGFKGYKI 92 (116)
T ss_dssp TTHHHHTT------G
T ss_pred HHHHHHhcCCCceee
Confidence 468899999999955
No 98
>COG1084 Predicted GTPase [General function prediction only]
Probab=23.05 E-value=2.1e+02 Score=28.40 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=20.7
Q ss_pred ChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 363 PGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 363 ~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
-..|..|.+.+...+.+|+|+|++-
T Consensus 265 lE~Q~~L~~eIk~~f~~p~v~V~nK 289 (346)
T COG1084 265 LEEQISLLEEIKELFKAPIVVVINK 289 (346)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3579999999998887888888764
No 99
>PTZ00325 malate dehydrogenase; Provisional
Probab=22.77 E-value=63 Score=31.88 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=32.0
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCCCCCCh---hHHHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~---~q~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
+..+++|+||++.|... .++.+|.++ +.. .-.++++++.+.. .+-+|++. .+|++..
T Consensus 72 ~~l~gaDvVVitaG~~~---~~~~tR~dl-l~~N~~i~~~i~~~i~~~~-~~~iviv~-SNPvdv~ 131 (321)
T PTZ00325 72 KALRGADLVLICAGVPR---KPGMTRDDL-FNTNAPIVRDLVAAVASSA-PKAIVGIV-SNPVNST 131 (321)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCcHHHH
Confidence 56789999999888532 223333222 222 2245566666543 33444444 5998873
No 100
>PRK03003 GTP-binding protein Der; Reviewed
Probab=22.66 E-value=2.6e+02 Score=29.10 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=27.9
Q ss_pred HHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 331 ~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
...+..+|.+|+++.... .++....++.+.+.. .++|+|+|+|-
T Consensus 112 ~~~~~~aD~il~VvD~~~------------~~s~~~~~i~~~l~~-~~~piilV~NK 155 (472)
T PRK03003 112 EVAMRTADAVLFVVDATV------------GATATDEAVARVLRR-SGKPVILAANK 155 (472)
T ss_pred HHHHHhCCEEEEEEECCC------------CCCHHHHHHHHHHHH-cCCCEEEEEEC
Confidence 345778999999985432 123334556666654 56899988764
No 101
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=22.51 E-value=4.9e+02 Score=24.29 Aligned_cols=83 Identities=22% Similarity=0.112 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCCccCchhhHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcCCCHHHHHH
Q 014083 166 EAAADAIKAGLDLDCGPFLAIHTEGAVRGGLL-REEDVNLALAYTITVQMRLGMFDGEPSAQPFGNLGPRDVCTPAHQQL 244 (431)
Q Consensus 166 ~~~~~al~AG~D~~~~~~~~~~l~~av~~g~~-~~~~l~~av~ril~~k~~~gl~~~~p~~~~~~~~~~~~v~~~~~~~l 244 (431)
+.-..+.+||.||+-...| -.-+.+|+. +.+.+-+-.++.-.+ |-+ .+.. -..+..+..++..+|
T Consensus 72 ~~f~~aV~AGAdliEIGNf----DsFY~qGr~f~a~eVL~Lt~~tR~L-----LP~-~~Ls----VTVPHiL~ld~Qv~L 137 (242)
T PF04481_consen 72 ELFVAAVKAGADLIEIGNF----DSFYAQGRRFSAEEVLALTRETRSL-----LPD-ITLS----VTVPHILPLDQQVQL 137 (242)
T ss_pred HHHHHHHHhCCCEEEecch----HHHHhcCCeecHHHHHHHHHHHHHh-----CCC-CceE----EecCccccHHHHHHH
Confidence 5678899999999864332 222346654 344443333333211 211 2211 011234556888999
Q ss_pred HHHHhhcceEEeecCCCC
Q 014083 245 ALQAAHQGIVLLKNSART 262 (431)
Q Consensus 245 a~e~a~esivLLKN~~~~ 262 (431)
|.++.+.++-+++-|+++
T Consensus 138 A~~L~~~GaDiIQTEGgt 155 (242)
T PF04481_consen 138 AEDLVKAGADIIQTEGGT 155 (242)
T ss_pred HHHHHHhCCcEEEcCCCC
Confidence 999999999999988753
No 102
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=22.50 E-value=2.6e+02 Score=26.29 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=16.1
Q ss_pred hhhhcCCCcEEECCchhhhhh
Q 014083 134 IHGQWRLDGYIVSDCDSVGVL 154 (431)
Q Consensus 134 LR~~~gf~G~v~sD~~~~~~~ 154 (431)
+-++.||+.+.+||+..+..+
T Consensus 24 ~~e~~G~~ai~~s~~~~~~s~ 44 (243)
T cd00377 24 LAERAGFKAIYTSGAGVAASL 44 (243)
T ss_pred HHHHcCCCEEEeccHHHHHhc
Confidence 335679999999999877443
No 103
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=22.41 E-value=1.4e+02 Score=30.12 Aligned_cols=75 Identities=17% Similarity=0.083 Sum_probs=45.2
Q ss_pred hhhhcCCCcEEECCchhhhhhhcc--ccc----------------cCChHHHHHHHHHcCCCccCchhhHHHHHHHHhCC
Q 014083 134 IHGQWRLDGYIVSDCDSVGVLYNT--QHY----------------TRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGG 195 (431)
Q Consensus 134 LR~~~gf~G~v~sD~~~~~~~~~~--~~~----------------~~~~~~~~~~al~AG~D~~~~~~~~~~l~~av~~g 195 (431)
|.+=+||+|.|+||.+..+-++-. .+. ..++++....--.-|.|+.|.-.. . -.-
T Consensus 74 lh~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~s~~dg~~~~ltpe~~i~~q~~ig~DI~m~LD~---~----~~~ 146 (367)
T TIGR00449 74 LHKFMQWDGPILTDSGGFQVFSLGDLRKIEEEGVHFKSPIDGSKIFLTPEKIMEIQYALGSDIIMALDE---C----TPP 146 (367)
T ss_pred HHHHcCCCCceEeccCcceeEecCcccccCCCceeeecCCCCCceecCHHHHHHHHHHHCCCEEEECCc---C----CCC
Confidence 556779999999999776543221 011 134555555445568898774211 0 011
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 014083 196 LLREEDVNLALAYTITVQMR 215 (431)
Q Consensus 196 ~~~~~~l~~av~ril~~k~~ 215 (431)
..+.+++.+|+.|-+++-.+
T Consensus 147 ~~~~~~~~~av~rT~rw~~r 166 (367)
T TIGR00449 147 PADYDYAEESLERTLRWAEE 166 (367)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45677888888887777555
No 104
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=22.38 E-value=2.2e+02 Score=25.35 Aligned_cols=57 Identities=19% Similarity=0.254 Sum_probs=37.3
Q ss_pred cccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhh--CCCCEEEEEeCCcee
Q 014083 324 NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKA--SRGPVVLVLMCGGPV 391 (431)
Q Consensus 324 ~~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~--~~~pvVvV~~~g~P~ 391 (431)
+..+.+..+++..+|.+|++.-++ +-.+|.-=+++|.-+... .+||+.++..++++.
T Consensus 55 p~~v~~~~~~i~~aD~li~~tPeY-----------n~s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g~~ 113 (184)
T COG0431 55 PPAVQALREAIAAADGLIIATPEY-----------NGSYPGALKNAIDWLSREALGGKPVLLLGTSGGGA 113 (184)
T ss_pred CHHHHHHHHHHHhCCEEEEECCcc-----------CCCCCHHHHHHHHhCCHhHhCCCcEEEEecCCCch
Confidence 445677778889999999875333 345677667777665422 367877766665553
No 105
>PRK06223 malate dehydrogenase; Reviewed
Probab=22.34 E-value=60 Score=31.50 Aligned_cols=55 Identities=18% Similarity=0.363 Sum_probs=29.0
Q ss_pred HhhcCCEEEEEeeCCCCcccccCCCCCCCCChhH----HHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 333 ~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q----~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
.++.+|.||+++|... ++|.+|..+ -... .++++.+.+.+. +-++++. .||.++.
T Consensus 67 ~~~~aDiVii~~~~p~---~~~~~r~~~--~~~n~~i~~~i~~~i~~~~~-~~~viv~-tNP~d~~ 125 (307)
T PRK06223 67 DIAGSDVVVITAGVPR---KPGMSRDDL--LGINAKIMKDVAEGIKKYAP-DAIVIVV-TNPVDAM 125 (307)
T ss_pred HHCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHH
Confidence 4689999999887532 233333211 1122 233444544443 4444445 4998773
No 106
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=22.24 E-value=1.8e+02 Score=24.68 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEE
Q 014083 330 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 384 (431)
Q Consensus 330 ~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV 384 (431)
.....+++|+|||-.|.. + -+.-..|=...+.+.+||+|++
T Consensus 66 T~~li~~aDvVVvrFGek------------Y--KQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEK------------Y--KQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred HHHHHhhCCEEEEEechH------------H--HHHHHHhhHHHHHHcCCCeEEe
Confidence 345688999999988742 1 1112233334445578998865
No 107
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=22.00 E-value=3.4e+02 Score=25.07 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=26.4
Q ss_pred HHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEe
Q 014083 329 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 386 (431)
Q Consensus 329 ~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~ 386 (431)
.....+..+|.+|+++... +| ......++++.+.. .++|+|+|++
T Consensus 89 ~~~~~l~~aD~~ilVvD~~-----~g-------~~~~t~~~l~~~~~-~~~p~ilviN 133 (222)
T cd01885 89 EVTAALRLCDGALVVVDAV-----EG-------VCVQTETVLRQALK-ERVKPVLVIN 133 (222)
T ss_pred HHHHHHHhcCeeEEEEECC-----CC-------CCHHHHHHHHHHHH-cCCCEEEEEE
Confidence 4455678888998887532 11 12223455555543 4568777765
No 108
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=22.00 E-value=59 Score=33.73 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=16.3
Q ss_pred HHhhcCCEEEEEeeCCCCcccccCCCCC
Q 014083 332 VAARQADATVLVMGLDQSIEAEFIDRAG 359 (431)
Q Consensus 332 ~~a~~aD~vIv~~g~~~~~~~eg~dr~~ 359 (431)
+..+++|+||++.|.. .++|.+|.+
T Consensus 195 ea~~daDvvIitag~p---rk~G~~R~D 219 (452)
T cd05295 195 VAFKDAHVIVLLDDFL---IKEGEDLEG 219 (452)
T ss_pred HHhCCCCEEEECCCCC---CCcCCCHHH
Confidence 5678999999876643 235555543
No 109
>PTZ00117 malate dehydrogenase; Provisional
Probab=21.78 E-value=61 Score=31.86 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=31.4
Q ss_pred HhhcCCEEEEEeeCCCCcccccCCCCCCCCC--hhHHHHHHHHHhhCCCCEEEEEeCCceeeec
Q 014083 333 AARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDVS 394 (431)
Q Consensus 333 ~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~--~~q~~li~~l~~~~~~pvVvV~~~g~P~~l~ 394 (431)
..+++|.||++.|.. ..+|.+|.++--. +--.++.+.+.+.+. +.++++. .||.++.
T Consensus 70 ~l~~ADiVVitag~~---~~~g~~r~dll~~n~~i~~~i~~~i~~~~p-~a~vivv-sNP~di~ 128 (319)
T PTZ00117 70 DIKDSDVVVITAGVQ---RKEEMTREDLLTINGKIMKSVAESVKKYCP-NAFVICV-TNPLDCM 128 (319)
T ss_pred HhCCCCEEEECCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cChHHHH
Confidence 568999999988743 2234444322111 112355566665443 4555545 4998764
No 110
>PRK00093 GTP-binding protein Der; Reviewed
Probab=21.77 E-value=2.8e+02 Score=28.30 Aligned_cols=44 Identities=30% Similarity=0.366 Sum_probs=27.9
Q ss_pred HHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 331 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 331 ~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
......+|++|+++.... .+...+.++.+.+.+ .++|+|+|++-
T Consensus 75 ~~~~~~ad~il~vvd~~~------------~~~~~~~~~~~~l~~-~~~piilv~NK 118 (435)
T PRK00093 75 ELAIEEADVILFVVDGRA------------GLTPADEEIAKILRK-SNKPVILVVNK 118 (435)
T ss_pred HHHHHhCCEEEEEEECCC------------CCCHHHHHHHHHHHH-cCCcEEEEEEC
Confidence 445678999999885321 123344556666654 46788888764
No 111
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=21.72 E-value=2.2e+02 Score=27.13 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=14.4
Q ss_pred HHHHHHHhhcCCEEEEEee
Q 014083 327 IGAAEVAARQADATVLVMG 345 (431)
Q Consensus 327 ~~~~~~~a~~aD~vIv~~g 345 (431)
+.+..+.++.+|++|.++.
T Consensus 12 ~~~~~~~l~~aDvVl~V~D 30 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLD 30 (276)
T ss_pred HHHHHHHHhhCCEEEEEEe
Confidence 4566677888999888874
No 112
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=21.70 E-value=2.7e+02 Score=28.20 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 330 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 330 ~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
+...++.+|.+++++.... .+.....++.+.+.+ .++|+|+|++-
T Consensus 72 ~~~~~~~ad~vl~vvD~~~------------~~~~~d~~i~~~l~~-~~~piilVvNK 116 (429)
T TIGR03594 72 AEIAIEEADVILFVVDGRE------------GLTPEDEEIAKWLRK-SGKPVILVANK 116 (429)
T ss_pred HHHHHhhCCEEEEEEeCCC------------CCCHHHHHHHHHHHH-hCCCEEEEEEC
Confidence 3456778999988875321 234444556666654 56888888663
No 113
>PLN03007 UDP-glucosyltransferase family protein
Probab=21.57 E-value=2.4e+02 Score=29.47 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=42.8
Q ss_pred CcEEECCchhhhhhhcccccc--C--ChHHHHHHHHHcCCCccCchhhHHHHH------HH------H--------hCCC
Q 014083 141 DGYIVSDCDSVGVLYNTQHYT--R--TPEEAAADAIKAGLDLDCGPFLAIHTE------GA------V--------RGGL 196 (431)
Q Consensus 141 ~G~v~sD~~~~~~~~~~~~~~--~--~~~~~~~~al~AG~D~~~~~~~~~~l~------~a------v--------~~g~ 196 (431)
+|+++.+|.-...+-.....+ . .--..+..|+.+|+=|++.+.+.+... +. + +.+.
T Consensus 345 ~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~ 424 (482)
T PLN03007 345 KGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDF 424 (482)
T ss_pred CCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCc
Confidence 578888886555443211000 0 011356789999999998775433221 11 1 2346
Q ss_pred CCHHHHHHHHHHHH
Q 014083 197 LREEDVNLALAYTI 210 (431)
Q Consensus 197 ~~~~~l~~av~ril 210 (431)
++.++|.+++++++
T Consensus 425 ~~~~~l~~av~~~m 438 (482)
T PLN03007 425 ISREKVEKAVREVI 438 (482)
T ss_pred ccHHHHHHHHHHHh
Confidence 89999999999996
No 114
>PRK01355 azoreductase; Reviewed
Probab=21.37 E-value=3e+02 Score=24.76 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=26.9
Q ss_pred ccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHH
Q 014083 325 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 374 (431)
Q Consensus 325 ~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~ 374 (431)
.+..+..+....||.+|++. |.+ ++..|..-+.+|+.+.
T Consensus 66 ~~~~~~~~~l~~AD~iV~~s---P~y--------~~~ipa~LK~~iDrv~ 104 (199)
T PRK01355 66 EVSDKYINQLKSVDKVVISC---PMT--------NFNVPATLKNYLDHIA 104 (199)
T ss_pred hhHHHHHHHHHhCCEEEEEc---Ccc--------ccCChHHHHHHHHHHH
Confidence 34566778889999998864 222 4567777777888764
No 115
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=21.32 E-value=3.5e+02 Score=25.76 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=10.1
Q ss_pred HHHHhhcCCEEEEEee
Q 014083 330 AEVAARQADATVLVMG 345 (431)
Q Consensus 330 ~~~~a~~aD~vIv~~g 345 (431)
....+..+|.+|+++.
T Consensus 81 ~~~~l~~aD~ailVVD 96 (270)
T cd01886 81 VERSLRVLDGAVAVFD 96 (270)
T ss_pred HHHHHHHcCEEEEEEE
Confidence 3445666777777764
No 116
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=21.15 E-value=2.4e+02 Score=25.35 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=34.7
Q ss_pred cHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHh--hCCCCEEEEEeCCce
Q 014083 326 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK--ASRGPVVLVLMCGGP 390 (431)
Q Consensus 326 ~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~--~~~~pvVvV~~~g~P 390 (431)
.+.+..+...++|.+|++. |.+ +..+|+-=+.+|..+.. -.+||+.++..+|.+
T Consensus 56 ~~~~~~~~i~~AD~iIi~t---P~Y--------~~s~pg~LKn~iD~l~~~~l~~K~v~iiat~G~~ 111 (191)
T PRK10569 56 ALKTFTEQLAQADGLIVAT---PVY--------KASFSGALKTLLDLLPERALEHKVVLPLATGGSV 111 (191)
T ss_pred HHHHHHHHHHHCCEEEEEC---Ccc--------CCCCCHHHHHHHHhCChhhhCCCEEEEEEecCCc
Confidence 5677778899999988854 222 34567766777765531 236777777666554
No 117
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=21.07 E-value=3e+02 Score=27.93 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=28.8
Q ss_pred HHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeC
Q 014083 330 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMC 387 (431)
Q Consensus 330 ~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~ 387 (431)
..+.+..+|++|+++.... .+.....+++..+.+ .++|+|+|++=
T Consensus 248 ~~~~~~~ad~~ilV~D~~~------------~~~~~~~~~~~~~~~-~~~~iiiv~NK 292 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATE------------GITEQDLRIAGLILE-AGKALVIVVNK 292 (429)
T ss_pred HHHHHHhCCEEEEEEECCC------------CccHHHHHHHHHHHH-cCCcEEEEEEC
Confidence 3456788999999885321 123344566666655 46888888663
No 118
>PRK09739 hypothetical protein; Provisional
Probab=20.67 E-value=2.3e+02 Score=25.39 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=36.3
Q ss_pred ccHHHHHHHhhcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHh----------hCCCCEEEEEeCCcee
Q 014083 325 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK----------ASRGPVVLVLMCGGPV 391 (431)
Q Consensus 325 ~~~~~~~~~a~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~----------~~~~pvVvV~~~g~P~ 391 (431)
.+..+..+....||.+|++. |-+ ++.+|..=+.+|+.+.. ..+|+++++..+|+++
T Consensus 68 ~~~~~~~~~l~~AD~iV~~~---P~y--------~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 68 PEVHQLYSELLEHDALVFVF---PLW--------WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred HHHHHHHHHHHhCCEEEEEC---chh--------hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 44667778889999998854 222 45566666777776631 1246777777766655
No 119
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=20.53 E-value=1.5e+02 Score=29.88 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=44.4
Q ss_pred hhhhcCCCcEEECCchhhhhhhcc------------------ccccCChHHHHHHHHHcCCCccCchhhHHHHHHHHhCC
Q 014083 134 IHGQWRLDGYIVSDCDSVGVLYNT------------------QHYTRTPEEAAADAIKAGLDLDCGPFLAIHTEGAVRGG 195 (431)
Q Consensus 134 LR~~~gf~G~v~sD~~~~~~~~~~------------------~~~~~~~~~~~~~al~AG~D~~~~~~~~~~l~~av~~g 195 (431)
|++=+||+|.|+||.+.-....-. .+...++++...---.-|.|+.|.-.. +. .-
T Consensus 78 Lh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~~~Gv~f~s~~~G~~~~ltpe~~~~~q~~ig~DI~~~LD~---~~----~~ 150 (366)
T PRK00112 78 LHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKHFLTPEKSMEIQYDLGSDIVMAFDE---CP----PY 150 (366)
T ss_pred HHHHhCCCCceeeccCcceeeeccccccCCCCceEEecCCCCceEEeCHHHHHHHHHHhCCCEEEECCc---CC----CC
Confidence 566789999999999775433211 011235555443333678898764210 00 11
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 014083 196 LLREEDVNLALAYTITVQMR 215 (431)
Q Consensus 196 ~~~~~~l~~av~ril~~k~~ 215 (431)
..+.+++.+|+.|-+++-.+
T Consensus 151 ~~~~~~~~~sv~rT~rw~~~ 170 (366)
T PRK00112 151 PATYDYAKKSMERTLRWAER 170 (366)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35678888888887766544
No 120
>COG1647 Esterase/lipase [General function prediction only]
Probab=20.50 E-value=5.8e+02 Score=23.97 Aligned_cols=91 Identities=8% Similarity=0.024 Sum_probs=63.5
Q ss_pred ccCCCHHHHHHHHHHHHHHHccCCCCCCeeEEeeccccccCCCCCCCCCccccccccCHHHHHhhhcHHHHHHHHhCCcc
Q 014083 30 TPGEDPVLTGKYAASYVRGLQGNTGSRLKVAACCKHYTAYDLDNWNGVDRYHFNARVSKQDLEDTYNVPFKACVVEGKVA 109 (431)
Q Consensus 30 ~fgeDp~lv~~~~~a~i~G~q~~~~g~~gv~a~~KHfpg~g~~~~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~~g~~~ 109 (431)
+|--.|.-|-.||+. +|.+ |--+.+=-|||||.. +.. -...+.+.|++.-+-.|+.+.++| -.
T Consensus 23 GFTGt~~Dvr~Lgr~----L~e~-----GyTv~aP~ypGHG~~------~e~-fl~t~~~DW~~~v~d~Y~~L~~~g-y~ 85 (243)
T COG1647 23 GFTGTPRDVRMLGRY----LNEN-----GYTVYAPRYPGHGTL------PED-FLKTTPRDWWEDVEDGYRDLKEAG-YD 85 (243)
T ss_pred ccCCCcHHHHHHHHH----HHHC-----CceEecCCCCCCCCC------HHH-HhcCCHHHHHHHHHHHHHHHHHcC-CC
Confidence 466677888777764 6777 688889999999953 211 134578999999999999998887 67
Q ss_pred eEeecccccCCccCcCCHHHHHHHhhhhcCCCcEEE
Q 014083 110 SVMCSYNQVNGKPTCADPDILKNTIHGQWRLDGYIV 145 (431)
Q Consensus 110 ~vM~sy~~v~g~pa~~s~~~l~~~LR~~~gf~G~v~ 145 (431)
.|-+.-.++.| +++-.|-..+--+|+|.
T Consensus 86 eI~v~GlSmGG--------v~alkla~~~p~K~iv~ 113 (243)
T COG1647 86 EIAVVGLSMGG--------VFALKLAYHYPPKKIVP 113 (243)
T ss_pred eEEEEeecchh--------HHHHHHHhhCCccceee
Confidence 77665555555 45555656666666653
No 121
>TIGR02383 Hfq RNA chaperone Hfq. This model represents the RNA-binding pleiotropic regulator Hfq, a small, Sm-like protein of bacteria. It helps pair regulatory noncoding RNAs with complementary mRNA target regions. It enhances the elongation of poly(A) tails on mRNA. It appears also to protect RNase E recognition sites (A/U-rich sequences with adjacent stem-loop structures) from cleavage. Being pleiotropic, it differs in some of its activities in different species. Hfq binds the non-coding regulatory RNA DsrA (see Rfam RF00014) in the few species known to have it: Escherichia coli, Shigella flexneri, Salmonella spp. In Azorhizobium caulinodans, an hfq mutant is unable to express nifA, and Hfq is called NrfA, for nif regulatory factor (see PubMed:8197116). The name hfq reflects phenomenology as a host factor for phage Q-beta RNA replication.
Probab=20.44 E-value=1.9e+02 Score=21.09 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCCCEEEEEeCCcee
Q 014083 366 QQELVSRVAKASRGPVVLVLMCGGPV 391 (431)
Q Consensus 366 q~~li~~l~~~~~~pvVvV~~~g~P~ 391 (431)
|+.+++.+.+ .++||.+.+.+|-.+
T Consensus 4 Qd~fln~~r~-~~~~Vti~L~nG~~l 28 (61)
T TIGR02383 4 QDQFLNTLRK-ERIPVTVFLVNGVQL 28 (61)
T ss_pred HHHHHHHHHH-cCCcEEEEEeCCcEE
Confidence 8899999987 567888888876544
No 122
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=20.23 E-value=1.8e+02 Score=30.59 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=34.0
Q ss_pred HHHHHHhhCCCCEEEEEeCCceeeecCcCCCCCccEEEEccCcchhhHHHHHHHhh
Q 014083 369 LVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLF 424 (431)
Q Consensus 369 li~~l~~~~~~pvVvV~~~g~P~~l~~~~~~~~v~ail~~~~~g~~~g~A~advL~ 424 (431)
.|++++ ++.|||.. ++|+|.++=. ..+.+.++ .||+++...+|+.|.
T Consensus 382 ~IEAMa--~glPvvAt-~~GGP~EiV~----~~~tG~l~--dp~~e~~~~~a~~~~ 428 (495)
T KOG0853|consen 382 PIEAMA--CGLPVVAT-NNGGPAEIVV----HGVTGLLI--DPGQEAVAELADALL 428 (495)
T ss_pred eHHHHh--cCCCEEEe-cCCCceEEEE----cCCcceee--CCchHHHHHHHHHHH
Confidence 678876 67898865 6789998732 46788886 568887666776653
No 123
>PRK05406 LamB/YcsF family protein; Provisional
Probab=20.13 E-value=2.9e+02 Score=26.13 Aligned_cols=41 Identities=12% Similarity=0.166 Sum_probs=32.3
Q ss_pred CcccHHHHHHHhhcCCEEEEEeeCCCC-cccccCCCCCCCCChhH
Q 014083 323 GNQLIGAAEVAARQADATVLVMGLDQS-IEAEFIDRAGLLLPGRQ 366 (431)
Q Consensus 323 ~~~~~~~~~~~a~~aD~vIv~~g~~~~-~~~eg~dr~~l~l~~~q 366 (431)
++....++++.|++.++.| |.++. ...+|+-|..+.+++++
T Consensus 42 Dp~~M~~tv~lA~~~gV~I---GAHPgypD~~gFGRR~m~~s~~e 83 (246)
T PRK05406 42 DPAVMRRTVRLAKENGVAI---GAHPGYPDLEGFGRRNMDLSPEE 83 (246)
T ss_pred CHHHHHHHHHHHHHcCCeE---ccCCCCCccCCCCCCCCCCCHHH
Confidence 3566788889999988866 87664 46899999999999854
No 124
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=20.05 E-value=3.3e+02 Score=25.44 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=39.8
Q ss_pred HHHHHh-hcCCEEEEEeeCCCCcccccCCCCCCCCChhHHHHHHHHHhhCCCCEEEEEeCCceeeecCcCCCCCccEEEE
Q 014083 329 AAEVAA-RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILW 407 (431)
Q Consensus 329 ~~~~~a-~~aD~vIv~~g~~~~~~~eg~dr~~l~l~~~q~~li~~l~~~~~~pvVvV~~~g~P~~l~~~~~~~~v~ail~ 407 (431)
+.++.+ +++|++||.+ .+..|. ....++.|+++.+++.+ .+.-+| .+..|-.+..++.+ +.-+.
T Consensus 175 ~~i~~~r~~~D~vIv~~----HwG~e~----~~~p~~~q~~~a~~lid-aGaDiI---iG~HpHv~q~~E~y---~~~~I 239 (250)
T PF09587_consen 175 EDIREARKKADVVIVSL----HWGIEY----ENYPTPEQRELARALID-AGADII---IGHHPHVIQPVEIY---KGKPI 239 (250)
T ss_pred HHHHHHhcCCCEEEEEe----ccCCCC----CCCCCHHHHHHHHHHHH-cCCCEE---EeCCCCcccceEEE---CCEEE
Confidence 333444 4689988875 343343 23447889999999987 454443 33467766555422 33333
Q ss_pred ccCcc
Q 014083 408 VGYPG 412 (431)
Q Consensus 408 ~~~~g 412 (431)
+|.-|
T Consensus 240 ~YSLG 244 (250)
T PF09587_consen 240 FYSLG 244 (250)
T ss_pred EEeCc
Confidence 45544
Done!