BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014084
         (431 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BOA|A Chain A, Human Procarboxypeptidase A4.
 pdb|2BOA|B Chain B, Human Procarboxypeptidase A4
          Length = 404

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 235 VDSIEKHAKHWGAVDIIVFNTYVWWMSGIRLKTLWGSFANGADGFEELDTPIAYRIGLKT 294
           VD I+KH    G +D+  ++  + +  G  +K         A   EELD     R+  K 
Sbjct: 275 VDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKK--------APDAEELDK--VARLAAKA 324

Query: 295 WANWIDSTINPNRTRVFFTTMSPTHTKSIDWGNKDGIK 332
            A+   +      T    TT+ P    SIDW   +GIK
Sbjct: 325 LASVSGTEYQVGPT---CTTVYPASGSSIDWAYDNGIK 359


>pdb|2PCU|A Chain A, Human Carboxypeptidase A4 In Complex With A Cleaved
           Hexapeptide
          Length = 305

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 235 VDSIEKHAKHWGAVDIIVFNTYVWWMSGIRLKTLWGSFANGADGFEELDTPIAYRIGLKT 294
           VD I+KH    G +D+  ++  + +  G  +K         A   EELD     R+  K 
Sbjct: 177 VDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKK--------APDAEELDK--VARLAAKA 226

Query: 295 WANWIDSTINPNRTRVFFTTMSPTHTKSIDWGNKDGIK 332
            A+   +      T    TT+ P    SIDW   +GIK
Sbjct: 227 LASVSGTEYQVGPT---CTTVYPASGSSIDWAYDNGIK 261


>pdb|4A94|A Chain A, Structure Of The Carboxypeptidase Inhibitor From Nerita
           Versicolor In Complex With Human Cpa4
 pdb|4A94|B Chain B, Structure Of The Carboxypeptidase Inhibitor From Nerita
           Versicolor In Complex With Human Cpa4
          Length = 310

 Score = 30.4 bits (67), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 235 VDSIEKHAKHWGAVDIIVFNTYVWWMSGIRLKTLWGSFANGADGFEELDTPIAYRIGLKT 294
           VD I+KH    G +D+  ++  + +  G  +K         A   EELD     R+  K 
Sbjct: 181 VDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKK--------APDAEELDK--VARLAAKA 230

Query: 295 WANWIDSTINPNRTRVFFTTMSPTHTKSIDWGNKDGIK 332
            A+   +      T    TT+ P    SIDW   +GIK
Sbjct: 231 LASVSGTEYQVGPT---CTTVYPASGSSIDWAYDNGIK 265


>pdb|2BO9|A Chain A, Human Carboxypeptidase A4 In Complex With Human Latexin.
 pdb|2BO9|C Chain C, Human Carboxypeptidase A4 In Complex With Human Latexin
          Length = 308

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 235 VDSIEKHAKHWGAVDIIVFNTYVWWMSGIRLKTLWGSFANGADGFEELDTPIAYRIGLKT 294
           VD I+KH    G +D+  ++  + +  G  +K         A   EELD     R+  K 
Sbjct: 179 VDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKK--------APDAEELDK--VARLAAKA 228

Query: 295 WANWIDSTINPNRTRVFFTTMSPTHTKSIDWGNKDGIK 332
            A+   +      T    TT+ P    SIDW   +GIK
Sbjct: 229 LASVSGTEYQVGPT---CTTVYPASGSSIDWAYDNGIK 263


>pdb|3NY4|A Chain A, Crystal Structure Of Blac-K73a Bound With Cefamandole
          Length = 265

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 379 EYRIDAHASVYTEAGGKVLTEEERADPLRHADCIHWCLPGVPDTWNQIFLAHL 431
           E R DA   VY  A G     E RAD  R A C  +  P V    +Q  L HL
Sbjct: 10  ERRYDARLGVYVPATGTTAAIEYRADE-RFAFCSTFAAPLVAAVLHQNPLTHL 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,797,230
Number of Sequences: 62578
Number of extensions: 519784
Number of successful extensions: 821
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 817
Number of HSP's gapped (non-prelim): 7
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)