BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014084
         (431 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
          Length = 781

 Score = 40.8 bits (94), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 97  VFNSSIKPLYSDRTCPYLDMQVSCVKNGRPDSDYRHWEWQPEDCTLPRFNPELALKKLRN 156
           VF+++ +   S  TC +L      + +GR   D     WQP  C L ++    A   LR 
Sbjct: 35  VFHAASRHYGSSDTCDWL------LSSGRFLGDNV---WQPYGCMLHKYKSTEAKFCLRE 85

Query: 157 KKLLFVGDSLQRGQWQSFVCMVESIIPEDKKHFKRGRSHTVFKAKEYNASIEFYW 211
           K++ FVGDS  R  + SF+ M+    PE K   + G  H      + ++++ F W
Sbjct: 86  KRIAFVGDSRIRQLFYSFIKMMN---PEVK---EVGNKHENIPFVDGDSTVNFLW 134


>sp|Q96PB1|CASD1_HUMAN CAS1 domain-containing protein 1 OS=Homo sapiens GN=CASD1 PE=2 SV=1
          Length = 797

 Score = 37.4 bits (85), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 135 WQPEDCTLPRFNPELALKKLRNKKLLFVGDSLQRGQWQSFVCMVESIIPEDKKHFKRGRS 194
           WQP  C + ++    A   L +K + F+GDS  R  + SFV ++    P+ K   + G  
Sbjct: 64  WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIIN---PQFK---EEGNK 117

Query: 195 H--TVFKAKEYNASIEFYWAP 213
           H    F+ K  +  ++F W P
Sbjct: 118 HENIPFEDKTASVKVDFLWHP 138


>sp|Q7TN73|CASD1_MOUSE CAS1 domain-containing protein 1 OS=Mus musculus GN=Casd1 PE=2 SV=1
          Length = 797

 Score = 37.4 bits (85), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 135 WQPEDCTLPRFNPELALKKLRNKKLLFVGDSLQRGQWQSFVCMVESIIPEDKKHFKRGRS 194
           WQP  C + ++    A   L +K + F+GDS  R  + SFV ++    P+ K   + G  
Sbjct: 64  WQPHSCMMHKYKISEAKTCLVDKHIAFIGDSRIRQLFYSFVKIIN---PQFK---EEGNK 117

Query: 195 H--TVFKAKEYNASIEFYWAP 213
           H    F+ K  +  ++F W P
Sbjct: 118 HENIPFEDKAASVKVDFLWHP 138


>sp|A4D0V7|CPED1_HUMAN Cadherin-like and PC-esterase domain-containing protein 1 OS=Homo
           sapiens GN=CPED1 PE=2 SV=1
          Length = 1026

 Score = 36.6 bits (83), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 109 RTCPYLDMQ-------VSCVKNGRPDSDYRHWEWQPEDCTLPRFNPELALKKLRNKKLLF 161
           + CP  DM+       +SC  N     D+R   WQP +C           + L  +K+LF
Sbjct: 716 KRCPSGDMKGQWIVPCLSCSDNR--TCDWREITWQPHNCQYGVLTKPQLQQCLGGRKILF 773

Query: 162 VGDSLQRG 169
           +GDS  RG
Sbjct: 774 IGDSTNRG 781


>sp|Q9Z6W4|PRIM_CHLPN DNA primase OS=Chlamydia pneumoniae GN=dnaG PE=3 SV=1
          Length = 590

 Score = 34.3 bits (77), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 156 NKKLLFVGDSLQRGQWQSFVCMVESIIPEDKKHFKRGRSHTVFKAKEYNASIEFYWAPFL 215
           NK  L VGD  Q  Q   FVC +      D    +RG S  +   ++    + F     +
Sbjct: 310 NKAALRVGDLCQTAQMSVFVCKLPQGHDPDSFLMQRGSSGLIALLEQSQDYLTF----LI 365

Query: 216 IESNSDLQIIGDPKKRILKVDSIEKHAKHWGAVDIIVFNTYVWWMSGIRL-KTLWGSFAN 274
            E  S     G P+++ L V+   +  KHWG+  I+V+       S + + + +  S AN
Sbjct: 366 SEKMSSYPKFG-PREKALLVEEAIRQIKHWGS-PILVYEHLKQLASLMMVPEDMVLSLAN 423

Query: 275 GADGFEELDTPIAYRI 290
                E  + PI  ++
Sbjct: 424 PQVTAEPQNIPIKQKV 439


>sp|A5CRZ1|AROC_CLAM3 Chorismate synthase OS=Clavibacter michiganensis subsp.
           michiganensis (strain NCPPB 382) GN=aroC PE=3 SV=1
          Length = 412

 Score = 33.9 bits (76), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 271 SFANGADGFEELDTPIAYRIGLKTWANWID----STINPNRTR----VFFTTMSPTHTKS 322
           S + G      L +PIA RIG   W  W+D      ++P + +       T   P H   
Sbjct: 58  SLSTGVVHGRTLGSPIAVRIGNTEWPKWVDIMSPEPVDPEKLQGARAAALTRPRPGHADL 117

Query: 323 IDWGNKDGIKCFNETKPVTKKKHWGSGSDKKMMSVVSDVVKKMKVPVTFLNIT-QISEYR 381
           +     D    F+E +PV ++      + +  +  V+      ++ +T ++ T  I   R
Sbjct: 118 VGMQKYD----FDEARPVLERASARETAARVALGAVARAFLA-ELGITLVSHTLSIGPVR 172

Query: 382 IDAHASVYTEAGGKVLTEEERADPLRHADCIH 413
           +   A + T A    L     ADPLR   C H
Sbjct: 173 VPEGAPLPTPADVDALD----ADPLR---CFH 197


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,661,702
Number of Sequences: 539616
Number of extensions: 7325349
Number of successful extensions: 13869
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13862
Number of HSP's gapped (non-prelim): 10
length of query: 431
length of database: 191,569,459
effective HSP length: 120
effective length of query: 311
effective length of database: 126,815,539
effective search space: 39439632629
effective search space used: 39439632629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)