Query 014085
Match_columns 431
No_of_seqs 174 out of 1852
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 01:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1E-66 2.2E-71 502.4 37.6 386 3-431 40-434 (674)
2 KOG0923 mRNA splicing factor A 100.0 6.7E-66 1.5E-70 491.6 32.7 387 4-431 255-651 (902)
3 KOG0924 mRNA splicing factor A 100.0 7.8E-61 1.7E-65 457.8 29.3 385 5-431 347-742 (1042)
4 COG1643 HrpA HrpA-like helicas 100.0 7.1E-60 1.5E-64 480.8 36.1 380 5-431 41-432 (845)
5 PRK11664 ATP-dependent RNA hel 100.0 6.2E-58 1.3E-62 475.0 35.6 371 12-431 3-383 (812)
6 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.9E-58 1.3E-62 474.0 35.3 370 13-431 1-380 (819)
7 KOG0925 mRNA splicing factor A 100.0 2.5E-56 5.5E-61 413.0 32.4 382 3-431 36-432 (699)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.9E-56 8.5E-61 470.2 35.3 373 8-431 61-448 (1283)
9 PRK11131 ATP-dependent RNA hel 100.0 4.2E-56 9.2E-61 468.3 32.8 372 9-431 69-455 (1294)
10 KOG0926 DEAH-box RNA helicase 100.0 3.6E-53 7.7E-58 411.4 28.8 395 5-431 247-749 (1172)
11 KOG0920 ATP-dependent RNA heli 100.0 1.1E-48 2.3E-53 397.1 23.9 386 3-431 162-591 (924)
12 PHA02653 RNA helicase NPH-II; 100.0 1.5E-47 3.2E-52 387.9 32.2 351 17-431 167-552 (675)
13 KOG0331 ATP-dependent RNA heli 100.0 2E-47 4.2E-52 367.3 21.1 320 3-391 102-452 (519)
14 KOG0330 ATP-dependent RNA heli 100.0 4.8E-44 1E-48 323.6 15.9 313 3-390 72-410 (476)
15 COG0513 SrmB Superfamily II DN 100.0 1.7E-43 3.7E-48 353.6 21.3 312 4-387 41-380 (513)
16 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-43 2.4E-48 332.0 17.3 317 3-388 256-625 (673)
17 PRK11776 ATP-dependent RNA hel 100.0 9.5E-43 2.1E-47 347.7 22.5 313 4-389 16-351 (460)
18 PTZ00110 helicase; Provisional 100.0 2.4E-42 5.2E-47 348.6 22.9 314 4-389 142-486 (545)
19 KOG0328 Predicted ATP-dependen 100.0 5E-42 1.1E-46 298.1 18.8 308 11-391 46-377 (400)
20 PRK04837 ATP-dependent RNA hel 100.0 5.6E-42 1.2E-46 338.6 21.5 315 3-389 19-364 (423)
21 PRK10590 ATP-dependent RNA hel 100.0 1.3E-41 2.8E-46 338.3 22.5 313 3-389 12-354 (456)
22 PLN00206 DEAD-box ATP-dependen 100.0 2.1E-41 4.5E-46 340.8 24.1 312 4-389 133-477 (518)
23 PRK11192 ATP-dependent RNA hel 100.0 2.9E-41 6.3E-46 335.0 24.1 316 3-391 12-356 (434)
24 PRK04537 ATP-dependent RNA hel 100.0 2.4E-41 5.1E-46 342.5 23.6 314 4-389 21-366 (572)
25 PRK11634 ATP-dependent RNA hel 100.0 2.8E-41 6.2E-46 343.8 23.1 313 3-388 17-353 (629)
26 PTZ00424 helicase 45; Provisio 100.0 1.1E-40 2.4E-45 328.3 21.5 311 7-390 43-377 (401)
27 PRK01297 ATP-dependent RNA hel 100.0 3.2E-40 6.9E-45 330.4 21.9 314 4-389 99-444 (475)
28 TIGR03817 DECH_helic helicase/ 100.0 3.1E-39 6.7E-44 335.0 26.5 320 3-385 25-384 (742)
29 PRK02362 ski2-like helicase; P 100.0 1.1E-39 2.3E-44 341.8 22.6 329 3-387 12-397 (737)
30 KOG0345 ATP-dependent RNA heli 100.0 1.2E-39 2.5E-44 301.7 19.1 348 3-421 17-405 (567)
31 TIGR00614 recQ_fam ATP-depende 100.0 2.5E-39 5.5E-44 322.8 22.9 299 11-391 8-337 (470)
32 KOG0342 ATP-dependent RNA heli 100.0 2.7E-39 5.9E-44 301.2 20.6 313 4-388 94-438 (543)
33 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-39 3.7E-44 305.5 17.7 314 4-388 81-423 (758)
34 KOG0338 ATP-dependent RNA heli 100.0 1.6E-40 3.5E-45 309.7 10.4 315 3-388 192-534 (691)
35 KOG0348 ATP-dependent RNA heli 100.0 3.4E-39 7.5E-44 302.5 18.4 324 10-389 155-556 (708)
36 KOG0340 ATP-dependent RNA heli 100.0 8.1E-39 1.7E-43 286.5 19.4 313 7-391 22-365 (442)
37 KOG0336 ATP-dependent RNA heli 100.0 2.9E-39 6.4E-44 294.0 16.0 312 8-391 236-576 (629)
38 PLN03137 ATP-dependent DNA hel 100.0 3.1E-38 6.8E-43 326.3 25.7 303 13-391 459-791 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 4.1E-38 9E-43 322.1 25.6 302 5-391 15-347 (607)
40 KOG0335 ATP-dependent RNA heli 100.0 3.9E-39 8.4E-44 304.9 15.4 313 10-387 92-444 (482)
41 TIGR01389 recQ ATP-dependent D 100.0 2.8E-37 6E-42 316.8 25.2 303 6-391 4-335 (591)
42 PRK01172 ski2-like helicase; P 100.0 7.1E-38 1.5E-42 325.9 20.3 319 11-385 19-376 (674)
43 PRK00254 ski2-like helicase; P 100.0 3.9E-37 8.4E-42 321.7 25.9 327 3-387 12-388 (720)
44 KOG0332 ATP-dependent RNA heli 100.0 2.3E-37 4.9E-42 278.8 20.7 312 9-387 107-443 (477)
45 PRK13767 ATP-dependent helicas 100.0 1.4E-36 3E-41 321.3 26.3 311 12-383 30-396 (876)
46 KOG0326 ATP-dependent RNA heli 100.0 1.7E-38 3.6E-43 280.6 6.3 303 11-388 104-430 (459)
47 COG1204 Superfamily II helicas 100.0 1.7E-35 3.7E-40 304.1 20.3 328 6-384 23-405 (766)
48 TIGR00580 mfd transcription-re 100.0 1.1E-34 2.4E-39 303.9 26.7 300 7-386 444-769 (926)
49 COG0514 RecQ Superfamily II DN 100.0 4.4E-35 9.5E-40 287.2 21.8 297 14-390 17-340 (590)
50 COG1201 Lhr Lhr-like helicases 100.0 8.5E-34 1.8E-38 287.9 27.3 335 12-417 20-402 (814)
51 KOG0347 RNA helicase [RNA proc 100.0 2.5E-36 5.5E-41 284.1 8.0 318 2-388 191-571 (731)
52 KOG0344 ATP-dependent RNA heli 100.0 1.6E-35 3.6E-40 282.1 12.8 316 9-391 153-499 (593)
53 PRK10917 ATP-dependent DNA hel 100.0 1.2E-33 2.5E-38 292.4 26.9 295 9-385 256-587 (681)
54 TIGR00643 recG ATP-dependent D 100.0 1.2E-33 2.7E-38 290.3 26.4 299 10-384 231-563 (630)
55 KOG0339 ATP-dependent RNA heli 100.0 1.2E-34 2.7E-39 270.3 16.0 307 11-390 242-578 (731)
56 KOG0350 DEAD-box ATP-dependent 100.0 3.4E-34 7.3E-39 267.2 17.8 344 7-388 152-541 (620)
57 KOG0346 RNA helicase [RNA proc 100.0 1.6E-34 3.5E-39 265.5 15.1 315 3-389 30-412 (569)
58 KOG0948 Nuclear exosomal RNA h 100.0 1.7E-34 3.7E-39 280.0 16.0 321 12-387 127-539 (1041)
59 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.6E-33 7.9E-38 284.9 26.3 341 11-426 12-431 (844)
60 PRK10689 transcription-repair 100.0 2.2E-33 4.7E-38 300.3 25.2 298 9-386 595-918 (1147)
61 KOG0341 DEAD-box protein abstr 100.0 1.5E-35 3.2E-40 268.2 7.2 311 3-387 181-528 (610)
62 COG1111 MPH1 ERCC4-like helica 100.0 7.6E-33 1.6E-37 260.2 25.0 301 12-387 13-481 (542)
63 COG1202 Superfamily II helicas 100.0 7E-34 1.5E-38 269.1 16.5 319 3-386 205-552 (830)
64 PRK09751 putative ATP-dependen 100.0 8.2E-34 1.8E-38 305.0 17.8 292 34-383 1-381 (1490)
65 KOG0947 Cytoplasmic exosomal R 100.0 3.7E-33 8E-38 277.0 20.1 323 9-386 292-722 (1248)
66 KOG0334 RNA helicase [RNA proc 100.0 4.2E-33 9.2E-38 281.6 20.9 310 4-389 377-722 (997)
67 KOG0354 DEAD-box like helicase 100.0 4.6E-32 1E-36 269.0 23.6 307 10-386 58-528 (746)
68 KOG4284 DEAD box protein [Tran 100.0 1.5E-32 3.2E-37 262.8 16.1 309 10-387 43-379 (980)
69 TIGR01587 cas3_core CRISPR-ass 100.0 2.1E-31 4.6E-36 258.2 24.1 283 31-387 1-336 (358)
70 KOG0327 Translation initiation 100.0 1.7E-32 3.7E-37 249.3 12.3 306 11-391 45-374 (397)
71 COG4581 Superfamily II RNA hel 100.0 1.4E-31 3E-36 275.5 20.1 325 9-387 114-537 (1041)
72 KOG0952 DNA/RNA helicase MER3/ 100.0 6.4E-31 1.4E-35 264.0 19.9 323 14-387 110-491 (1230)
73 PHA02558 uvsW UvsW helicase; P 100.0 3E-30 6.5E-35 258.9 22.3 291 12-379 112-443 (501)
74 TIGR03158 cas3_cyano CRISPR-as 100.0 7.4E-30 1.6E-34 245.3 23.8 279 18-373 1-357 (357)
75 KOG0351 ATP-dependent DNA heli 100.0 5.3E-30 1.2E-34 265.4 18.7 301 14-391 264-596 (941)
76 COG1205 Distinct helicase fami 100.0 2.4E-29 5.2E-34 262.3 20.8 321 7-386 63-421 (851)
77 PRK13766 Hef nuclease; Provisi 100.0 1E-27 2.2E-32 254.3 26.7 108 252-386 363-478 (773)
78 KOG0337 ATP-dependent RNA heli 100.0 1.5E-29 3.3E-34 231.7 8.3 309 8-388 37-369 (529)
79 KOG0352 ATP-dependent DNA heli 100.0 1.1E-28 2.3E-33 226.4 13.5 293 16-391 22-366 (641)
80 KOG0951 RNA helicase BRR2, DEA 100.0 1.5E-28 3.3E-33 249.9 15.4 316 14-376 309-688 (1674)
81 TIGR00603 rad25 DNA repair hel 100.0 2.5E-27 5.4E-32 239.9 24.1 293 10-387 251-607 (732)
82 PRK09401 reverse gyrase; Revie 100.0 4.9E-28 1.1E-32 259.8 17.2 300 10-373 76-429 (1176)
83 PRK09694 helicase Cas3; Provis 100.0 1.7E-26 3.6E-31 240.2 25.9 294 12-376 284-663 (878)
84 COG1200 RecG RecG-like helicas 100.0 2E-27 4.3E-32 232.9 16.6 300 9-387 257-591 (677)
85 PRK14701 reverse gyrase; Provi 99.9 3E-27 6.6E-32 258.8 16.1 326 6-387 71-456 (1638)
86 PRK12898 secA preprotein trans 99.9 7.7E-26 1.7E-30 226.6 24.2 164 193-388 410-587 (656)
87 COG1061 SSL2 DNA or RNA helica 99.9 3.7E-26 8E-31 225.1 21.4 287 9-376 31-377 (442)
88 PRK05580 primosome assembly pr 99.9 6.4E-26 1.4E-30 233.9 24.0 311 11-383 141-545 (679)
89 KOG0950 DNA polymerase theta/e 99.9 1E-26 2.3E-31 232.8 13.9 319 14-389 223-613 (1008)
90 TIGR00595 priA primosomal prot 99.9 1.4E-25 3.1E-30 223.5 20.3 293 33-387 1-382 (505)
91 TIGR03714 secA2 accessory Sec 99.9 1.6E-24 3.6E-29 219.5 26.6 160 193-388 361-538 (762)
92 PRK09200 preprotein translocas 99.9 1.3E-24 2.9E-29 222.2 24.7 107 253-388 427-542 (790)
93 KOG0921 Dosage compensation co 99.9 7.3E-26 1.6E-30 223.8 13.8 375 5-423 369-810 (1282)
94 TIGR01054 rgy reverse gyrase. 99.9 4.2E-25 9.2E-30 237.6 20.8 284 9-343 73-410 (1171)
95 KOG0353 ATP-dependent DNA heli 99.9 4.3E-25 9.3E-30 200.1 16.6 303 5-386 84-466 (695)
96 COG1197 Mfd Transcription-repa 99.9 7.5E-24 1.6E-28 218.8 23.5 304 4-387 584-913 (1139)
97 COG4098 comFA Superfamily II D 99.9 1.3E-23 2.7E-28 188.6 21.1 296 14-384 97-413 (441)
98 TIGR00963 secA preprotein tran 99.9 1.1E-23 2.5E-28 212.2 23.0 162 193-388 342-518 (745)
99 PRK11448 hsdR type I restricti 99.9 3.2E-23 6.9E-28 221.7 26.3 113 253-385 697-813 (1123)
100 PRK04914 ATP-dependent helicas 99.9 3.5E-22 7.5E-27 209.4 26.2 109 245-379 484-595 (956)
101 COG1203 CRISPR-associated heli 99.9 5.1E-22 1.1E-26 207.0 19.0 299 14-385 195-548 (733)
102 KOG0949 Predicted helicase, DE 99.9 9.3E-22 2E-26 196.7 18.4 328 13-401 510-1063(1330)
103 KOG0329 ATP-dependent RNA heli 99.9 7.1E-22 1.5E-26 170.3 13.4 273 10-389 60-357 (387)
104 TIGR00631 uvrb excinuclease AB 99.9 8.1E-20 1.8E-24 186.7 24.2 126 237-386 427-552 (655)
105 PRK12906 secA preprotein trans 99.8 5.9E-20 1.3E-24 187.0 21.0 164 193-387 377-553 (796)
106 KOG0953 Mitochondrial RNA heli 99.8 4.1E-20 8.8E-25 175.6 13.5 276 28-387 190-477 (700)
107 COG1198 PriA Primosomal protei 99.8 1.5E-19 3.3E-24 183.2 17.9 313 13-387 197-604 (730)
108 KOG0349 Putative DEAD-box RNA 99.8 9.1E-20 2E-24 168.2 10.8 112 250-385 501-613 (725)
109 PRK12904 preprotein translocas 99.8 3.3E-18 7.2E-23 175.0 19.5 162 193-387 367-573 (830)
110 COG0556 UvrB Helicase subunit 99.8 1.1E-17 2.3E-22 158.8 21.0 168 191-385 386-555 (663)
111 PRK13104 secA preprotein trans 99.8 2.6E-17 5.6E-22 168.8 21.5 124 252-387 442-587 (896)
112 COG4096 HsdR Type I site-speci 99.8 1.4E-16 3E-21 159.2 24.1 292 13-376 164-526 (875)
113 TIGR00348 hsdR type I site-spe 99.8 8.8E-17 1.9E-21 166.2 23.0 103 254-379 514-639 (667)
114 PRK05298 excinuclease ABC subu 99.7 3E-17 6.4E-22 169.1 16.8 124 238-385 432-555 (652)
115 cd00079 HELICc Helicase superf 99.7 1.5E-16 3.3E-21 130.9 10.8 104 253-383 27-131 (131)
116 PLN03142 Probable chromatin-re 99.7 4.6E-15 1E-19 156.8 24.2 109 253-388 486-600 (1033)
117 PRK13107 preprotein translocas 99.7 2E-15 4.3E-20 154.6 18.4 106 253-387 448-591 (908)
118 PF00271 Helicase_C: Helicase 99.7 5.8E-17 1.2E-21 120.7 4.8 72 287-376 7-78 (78)
119 KOG4150 Predicted ATP-dependen 99.7 2.7E-16 5.8E-21 150.0 9.7 174 190-384 450-637 (1034)
120 PRK12900 secA preprotein trans 99.6 1.1E-15 2.3E-20 157.2 13.1 165 193-388 535-712 (1025)
121 COG1110 Reverse gyrase [DNA re 99.6 1.1E-14 2.3E-19 148.1 18.9 286 10-342 78-417 (1187)
122 TIGR01407 dinG_rel DnaQ family 99.6 5.4E-14 1.2E-18 150.0 24.0 182 192-383 596-811 (850)
123 PF00270 DEAD: DEAD/DEAH box h 99.6 4.2E-15 9.2E-20 128.1 11.7 117 16-132 1-133 (169)
124 KOG0951 RNA helicase BRR2, DEA 99.6 5E-14 1.1E-18 145.2 15.6 310 16-385 1145-1492(1674)
125 KOG1123 RNA polymerase II tran 99.5 6.8E-14 1.5E-18 132.0 13.8 277 13-376 301-635 (776)
126 cd00268 DEADc DEAD-box helicas 99.5 3.1E-14 6.8E-19 126.6 10.6 118 11-129 18-154 (203)
127 PRK12899 secA preprotein trans 99.5 7.2E-13 1.6E-17 136.4 20.7 117 239-387 555-681 (970)
128 PRK07246 bifunctional ATP-depe 99.5 3.6E-12 7.8E-17 134.5 24.9 164 236-413 631-816 (820)
129 smart00490 HELICc helicase sup 99.5 2.7E-14 5.8E-19 107.1 6.0 81 269-376 2-82 (82)
130 TIGR02562 cas3_yersinia CRISPR 99.5 9.2E-12 2E-16 129.3 24.9 96 257-376 759-880 (1110)
131 PRK12326 preprotein translocas 99.4 1.2E-11 2.6E-16 124.4 19.5 106 252-387 425-547 (764)
132 PRK08074 bifunctional ATP-depe 99.4 6.3E-11 1.4E-15 127.3 22.6 170 236-414 735-926 (928)
133 PF07652 Flavi_DEAD: Flaviviru 99.3 2.5E-12 5.4E-17 103.8 7.0 119 27-147 2-124 (148)
134 PRK14873 primosome assembly pr 99.3 6.8E-11 1.5E-15 121.3 17.7 280 33-387 164-539 (665)
135 smart00487 DEXDc DEAD-like hel 99.3 4.1E-11 8.9E-16 105.5 13.1 75 10-84 4-79 (201)
136 PF04851 ResIII: Type III rest 99.2 1.5E-11 3.3E-16 107.3 7.7 66 13-83 2-74 (184)
137 PRK13103 secA preprotein trans 99.2 4.6E-10 1E-14 115.8 18.7 117 239-387 436-591 (913)
138 KOG0390 DNA repair protein, SN 99.2 9.5E-10 2.1E-14 112.0 18.9 84 285-386 617-706 (776)
139 COG4889 Predicted helicase [Ge 99.2 5.6E-11 1.2E-15 119.2 9.4 106 256-379 462-576 (1518)
140 PRK12903 secA preprotein trans 99.2 2.3E-09 5E-14 109.7 19.1 161 193-387 363-539 (925)
141 CHL00122 secA preprotein trans 99.1 1.4E-09 3.1E-14 111.8 16.8 67 252-329 422-490 (870)
142 cd00046 DEXDc DEAD-like helica 99.1 3.8E-10 8.2E-15 93.4 10.7 55 30-84 1-55 (144)
143 KOG0385 Chromatin remodeling c 99.1 1.8E-08 3.8E-13 100.6 19.8 110 253-389 486-601 (971)
144 TIGR03117 cas_csf4 CRISPR-asso 99.0 2.3E-08 4.9E-13 101.7 18.8 127 237-376 454-602 (636)
145 KOG1000 Chromatin remodeling p 98.9 9E-08 2E-12 91.2 18.6 99 251-376 489-589 (689)
146 KOG0384 Chromodomain-helicase 98.9 5.3E-08 1.1E-12 101.7 17.1 133 252-414 697-836 (1373)
147 PRK12902 secA preprotein trans 98.9 6E-08 1.3E-12 100.0 17.1 67 252-329 437-505 (939)
148 PF02399 Herpes_ori_bp: Origin 98.9 1.2E-07 2.5E-12 96.9 18.6 291 28-387 48-388 (824)
149 KOG0387 Transcription-coupled 98.8 6.8E-07 1.5E-11 89.9 20.8 108 254-387 546-658 (923)
150 KOG0952 DNA/RNA helicase MER3/ 98.6 5.1E-08 1.1E-12 100.4 5.8 211 30-278 944-1177(1230)
151 PRK12901 secA preprotein trans 98.5 1.3E-06 2.9E-11 91.3 12.8 160 193-387 565-741 (1112)
152 KOG0389 SNF2 family DNA-depend 98.4 6.9E-06 1.5E-10 82.8 14.3 109 254-389 777-890 (941)
153 KOG0392 SNF2 family DNA-depend 98.3 1.8E-05 3.8E-10 83.3 16.0 135 254-412 1340-1494(1549)
154 COG1120 FepC ABC-type cobalami 98.2 3.6E-08 7.7E-13 88.8 -4.9 145 3-148 2-188 (258)
155 COG0610 Type I site-specific r 98.2 0.0001 2.2E-09 79.7 20.2 57 302-377 580-638 (962)
156 PF00448 SRP54: SRP54-type pro 98.2 1.5E-05 3.3E-10 69.9 11.2 97 30-133 2-98 (196)
157 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 1E-06 2.2E-11 79.1 3.0 145 1-146 2-187 (254)
158 COG2884 FtsE Predicted ATPase 98.1 3.7E-06 8E-11 71.1 4.1 144 3-146 1-185 (223)
159 COG1124 DppF ABC-type dipeptid 98.1 2.9E-06 6.2E-11 74.7 3.5 147 1-148 1-191 (252)
160 COG3839 MalK ABC-type sugar tr 98.0 4.2E-07 9.1E-12 85.2 -2.3 52 1-52 1-52 (338)
161 PF13401 AAA_22: AAA domain; P 98.0 9.5E-06 2.1E-10 66.4 5.9 102 28-144 3-111 (131)
162 COG1136 SalX ABC-type antimicr 98.0 6.7E-06 1.4E-10 72.8 5.0 129 17-147 19-191 (226)
163 COG1126 GlnQ ABC-type polar am 98.0 9.8E-07 2.1E-11 76.2 -0.7 52 3-54 2-53 (240)
164 cd03216 ABC_Carb_Monos_I This 98.0 6.1E-07 1.3E-11 76.6 -2.2 123 8-145 5-129 (163)
165 COG4555 NatA ABC-type Na+ tran 98.0 1.4E-05 3.1E-10 68.2 6.0 125 3-127 1-160 (245)
166 COG1116 TauB ABC-type nitrate/ 98.0 3E-06 6.6E-11 75.1 1.6 143 2-146 2-178 (248)
167 COG1119 ModF ABC-type molybden 97.9 8.7E-06 1.9E-10 71.8 3.8 54 3-56 31-84 (257)
168 PRK12723 flagellar biosynthesi 97.9 0.00016 3.4E-09 70.0 12.6 91 29-132 174-268 (388)
169 COG1122 CbiO ABC-type cobalt t 97.9 1.4E-06 3.1E-11 78.2 -1.4 48 3-50 3-51 (235)
170 PF13604 AAA_30: AAA domain; P 97.9 7.9E-05 1.7E-09 65.6 9.2 62 15-78 2-65 (196)
171 COG1125 OpuBA ABC-type proline 97.9 7.4E-07 1.6E-11 78.7 -3.7 50 3-52 1-50 (309)
172 COG4525 TauB ABC-type taurine 97.9 4.6E-06 9.9E-11 70.8 1.1 50 1-50 1-52 (259)
173 PF13245 AAA_19: Part of AAA d 97.9 3.7E-05 8E-10 56.2 5.6 55 25-79 6-62 (76)
174 COG0653 SecA Preprotein transl 97.8 0.00015 3.3E-09 75.1 11.7 105 252-385 427-543 (822)
175 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 6.7E-06 1.5E-10 68.6 1.5 100 18-144 15-116 (144)
176 PF02562 PhoH: PhoH-like prote 97.8 2.9E-05 6.3E-10 68.0 5.4 58 13-70 3-60 (205)
177 smart00488 DEXDc2 DEAD-like he 97.8 3.2E-05 6.8E-10 72.4 6.0 74 8-81 2-83 (289)
178 smart00489 DEXDc3 DEAD-like he 97.8 3.2E-05 6.8E-10 72.4 6.0 74 8-81 2-83 (289)
179 COG1199 DinG Rad3-related DNA 97.8 0.00011 2.3E-09 77.4 10.6 135 236-383 462-614 (654)
180 PRK11747 dinG ATP-dependent DN 97.8 0.00025 5.5E-09 74.5 12.8 134 236-383 518-671 (697)
181 COG1419 FlhF Flagellar GTP-bin 97.8 0.00027 5.9E-09 67.4 11.7 130 28-211 202-333 (407)
182 cd03246 ABCC_Protease_Secretio 97.8 2.3E-05 4.9E-10 67.6 3.8 116 18-145 17-143 (173)
183 COG3842 PotA ABC-type spermidi 97.7 1.3E-06 2.9E-11 82.4 -4.5 126 2-127 4-163 (352)
184 COG4152 ABC-type uncharacteriz 97.7 3.5E-05 7.6E-10 67.9 4.5 143 3-145 2-177 (300)
185 PRK09536 btuD corrinoid ABC tr 97.7 1.5E-05 3.3E-10 77.7 2.4 144 1-146 1-187 (402)
186 cd03228 ABCC_MRP_Like The MRP 97.7 2.8E-06 6E-11 73.2 -2.5 122 18-144 17-142 (171)
187 cd03230 ABC_DR_subfamily_A Thi 97.7 2.6E-05 5.6E-10 67.3 3.6 122 10-145 7-142 (173)
188 cd00009 AAA The AAA+ (ATPases 97.7 0.00032 7E-09 58.0 10.2 36 18-53 6-43 (151)
189 COG4608 AppF ABC-type oligopep 97.7 2E-05 4.3E-10 71.0 2.8 143 2-147 3-158 (268)
190 COG1131 CcmA ABC-type multidru 97.7 2.5E-05 5.4E-10 73.2 3.5 144 3-146 4-184 (293)
191 cd03223 ABCD_peroxisomal_ALDP 97.7 0.00013 2.7E-09 62.5 7.6 115 17-144 15-137 (166)
192 PRK14722 flhF flagellar biosyn 97.7 0.0003 6.6E-09 67.5 10.9 89 27-128 135-225 (374)
193 PF00176 SNF2_N: SNF2 family N 97.7 6.7E-05 1.4E-09 70.7 6.4 55 28-83 24-81 (299)
194 KOG0921 Dosage compensation co 97.7 2.8E-06 6.1E-11 86.5 -3.3 361 10-421 402-816 (1282)
195 TIGR00604 rad3 DNA repair heli 97.7 0.00033 7.2E-09 74.0 11.7 181 193-379 443-665 (705)
196 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00027 5.8E-09 61.0 9.0 97 24-145 20-118 (177)
197 COG1127 Ttg2A ABC-type transpo 97.7 6.3E-05 1.4E-09 66.2 4.9 52 3-54 8-59 (263)
198 cd03229 ABC_Class3 This class 97.7 2.9E-06 6.3E-11 73.6 -3.4 127 9-146 6-148 (178)
199 TIGR01447 recD exodeoxyribonuc 97.6 0.00015 3.2E-09 74.3 8.2 65 17-81 148-215 (586)
200 PRK13537 nodulation ABC transp 97.6 5.5E-05 1.2E-09 71.5 4.8 143 3-145 7-185 (306)
201 PRK11264 putative amino-acid A 97.6 4E-05 8.6E-10 70.4 3.8 51 1-51 1-51 (250)
202 PF13086 AAA_11: AAA domain; P 97.6 0.00012 2.6E-09 66.1 6.9 67 15-81 2-75 (236)
203 COG0410 LivF ABC-type branched 97.6 2E-06 4.2E-11 75.2 -4.7 139 1-158 1-140 (237)
204 cd03247 ABCC_cytochrome_bd The 97.6 2.2E-06 4.8E-11 74.3 -4.4 123 17-144 16-144 (178)
205 PF13307 Helicase_C_2: Helicas 97.6 2.7E-05 6E-10 66.6 2.4 122 253-384 8-146 (167)
206 PRK11889 flhF flagellar biosyn 97.6 0.0011 2.3E-08 63.6 13.2 93 30-135 242-337 (436)
207 cd03238 ABC_UvrA The excision 97.6 0.00039 8.5E-09 59.9 9.4 112 21-145 13-136 (176)
208 PRK09544 znuC high-affinity zi 97.6 2.3E-05 5E-10 71.9 1.9 142 3-146 4-168 (251)
209 cd03213 ABCG_EPDR ABCG transpo 97.6 7E-05 1.5E-09 65.9 4.7 135 5-144 5-157 (194)
210 PRK14250 phosphate ABC transpo 97.6 5.3E-05 1.1E-09 69.2 4.0 145 1-146 1-179 (241)
211 cd03214 ABC_Iron-Siderophores_ 97.6 3E-05 6.4E-10 67.4 2.2 122 17-145 13-144 (180)
212 PRK06526 transposase; Provisio 97.6 0.00037 8.1E-09 63.8 9.3 39 26-66 95-133 (254)
213 PRK10419 nikE nickel transport 97.6 5E-05 1.1E-09 70.5 3.5 52 1-52 1-61 (268)
214 TIGR02768 TraA_Ti Ti-type conj 97.6 0.015 3.2E-07 61.8 22.3 63 12-76 350-413 (744)
215 cd03215 ABC_Carb_Monos_II This 97.6 0.00014 2.9E-09 63.4 5.9 126 4-145 5-151 (182)
216 PRK14974 cell division protein 97.6 0.0012 2.6E-08 62.7 12.7 99 30-137 141-241 (336)
217 PRK13536 nodulation factor exp 97.6 5.5E-05 1.2E-09 72.4 3.7 143 3-145 41-219 (340)
218 PRK05703 flhF flagellar biosyn 97.6 0.0012 2.6E-08 65.1 13.0 89 28-129 220-310 (424)
219 cd03258 ABC_MetN_methionine_tr 97.6 0.00011 2.5E-09 66.6 5.4 49 4-52 2-54 (233)
220 PRK10895 lipopolysaccharide AB 97.6 9.7E-05 2.1E-09 67.4 5.0 52 1-52 1-52 (241)
221 PRK11650 ugpC glycerol-3-phosp 97.6 4E-05 8.7E-10 73.8 2.5 144 1-146 1-182 (356)
222 PRK11432 fbpC ferric transport 97.5 3.8E-05 8.3E-10 73.8 2.3 144 1-146 4-184 (351)
223 PRK11000 maltose/maltodextrin 97.5 4.5E-05 9.8E-10 74.0 2.8 144 1-146 1-181 (369)
224 PRK10875 recD exonuclease V su 97.5 0.00033 7.2E-09 71.9 9.0 66 16-81 154-221 (615)
225 PRK10247 putative ABC transpor 97.5 0.00011 2.3E-09 66.4 4.9 50 3-52 7-56 (225)
226 cd03235 ABC_Metallic_Cations A 97.5 0.00015 3.2E-09 64.8 5.8 45 8-52 4-48 (213)
227 KOG0058 Peptide exporter, ABC 97.5 5.8E-05 1.3E-09 76.4 3.4 51 4-54 466-519 (716)
228 TIGR01448 recD_rel helicase, p 97.5 0.00087 1.9E-08 70.6 12.3 66 11-76 320-385 (720)
229 PRK13538 cytochrome c biogenes 97.5 7.8E-05 1.7E-09 66.2 3.9 48 5-52 3-50 (204)
230 cd03259 ABC_Carb_Solutes_like 97.5 0.0001 2.3E-09 65.8 4.7 140 7-146 4-178 (213)
231 PRK08181 transposase; Validate 97.5 0.0012 2.6E-08 60.8 11.6 40 25-66 102-141 (269)
232 COG3638 ABC-type phosphate/pho 97.5 9.7E-05 2.1E-09 64.9 4.1 50 2-51 2-52 (258)
233 COG4604 CeuD ABC-type enteroch 97.5 0.00015 3.2E-09 61.9 5.0 53 3-55 1-53 (252)
234 PRK13543 cytochrome c biogenes 97.5 0.00012 2.7E-09 65.4 4.8 142 3-145 11-184 (214)
235 TIGR02673 FtsE cell division A 97.5 0.00013 2.7E-09 65.3 4.7 141 4-145 2-184 (214)
236 PRK13889 conjugal transfer rel 97.5 0.034 7.3E-07 60.3 23.4 63 11-75 343-406 (988)
237 cd03226 ABC_cobalt_CbiO_domain 97.5 0.00016 3.5E-09 64.2 5.2 136 9-145 5-173 (205)
238 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.00012 2.5E-09 65.9 4.2 130 17-146 18-179 (220)
239 PF05970 PIF1: PIF1-like helic 97.5 0.00034 7.3E-09 67.9 7.6 103 15-128 2-112 (364)
240 TIGR01288 nodI ATP-binding ABC 97.4 0.00013 2.9E-09 68.9 4.5 143 3-145 4-182 (303)
241 TIGR02315 ABC_phnC phosphonate 97.4 0.00012 2.7E-09 66.8 4.2 49 4-52 2-51 (243)
242 smart00382 AAA ATPases associa 97.4 0.00026 5.6E-09 58.0 5.8 39 29-69 2-40 (148)
243 PRK11247 ssuB aliphatic sulfon 97.4 8.7E-05 1.9E-09 68.3 3.0 141 4-146 13-181 (257)
244 cd03248 ABCC_TAP TAP, the Tran 97.4 0.00025 5.3E-09 64.1 5.8 50 3-52 11-63 (226)
245 TIGR02760 TraI_TIGR conjugativ 97.4 0.02 4.4E-07 66.7 22.4 246 12-312 427-685 (1960)
246 PRK11701 phnK phosphonate C-P 97.4 0.00021 4.6E-09 65.9 5.4 50 3-52 6-55 (258)
247 cd03266 ABC_NatA_sodium_export 97.4 0.00013 2.7E-09 65.5 3.8 48 5-52 3-54 (218)
248 COG4618 ArpD ABC-type protease 97.4 2.3E-05 5.1E-10 75.8 -1.1 112 16-127 349-499 (580)
249 cd03217 ABC_FeS_Assembly ABC-t 97.4 0.0002 4.4E-09 63.3 4.9 137 8-145 5-151 (200)
250 TIGR03265 PhnT2 putative 2-ami 97.4 6.7E-05 1.5E-09 72.2 1.9 144 1-146 2-182 (353)
251 PRK12726 flagellar biosynthesi 97.4 0.0014 3E-08 62.7 10.5 94 27-133 204-300 (407)
252 cd03301 ABC_MalK_N The N-termi 97.4 0.00018 4E-09 64.3 4.5 140 7-146 4-178 (213)
253 cd03232 ABC_PDR_domain2 The pl 97.4 0.00013 2.9E-09 64.0 3.5 137 5-145 5-155 (192)
254 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.00013 2.9E-09 61.7 3.4 110 19-144 15-126 (157)
255 cd03269 ABC_putative_ATPase Th 97.4 0.00013 2.7E-09 65.1 3.4 136 10-145 7-175 (210)
256 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 0.00012 2.5E-09 65.8 3.1 37 16-52 17-53 (218)
257 PRK10584 putative ABC transpor 97.4 0.00011 2.5E-09 66.3 2.9 50 3-52 6-59 (228)
258 PF06862 DUF1253: Protein of u 97.4 0.011 2.4E-07 57.9 16.6 231 115-390 158-418 (442)
259 PRK11629 lolD lipoprotein tran 97.4 0.00025 5.5E-09 64.3 5.0 50 3-52 5-58 (233)
260 cd03257 ABC_NikE_OppD_transpor 97.4 0.00025 5.4E-09 64.1 4.9 47 6-52 4-54 (228)
261 PF01695 IstB_IS21: IstB-like 97.4 0.00063 1.4E-08 58.8 7.2 40 26-67 44-83 (178)
262 TIGR00960 3a0501s02 Type II (G 97.3 0.0001 2.2E-09 66.0 2.3 48 5-52 3-52 (216)
263 PRK11248 tauB taurine transpor 97.3 0.00017 3.8E-09 66.3 3.8 141 5-145 3-175 (255)
264 cd03268 ABC_BcrA_bacitracin_re 97.3 0.00015 3.2E-09 64.6 3.2 45 8-52 5-49 (208)
265 PRK13540 cytochrome c biogenes 97.3 0.00017 3.7E-09 63.8 3.6 49 4-52 2-50 (200)
266 PRK13638 cbiO cobalt transport 97.3 0.00026 5.6E-09 65.8 5.0 48 4-51 2-49 (271)
267 PRK15439 autoinducer 2 ABC tra 97.3 0.00025 5.4E-09 72.2 5.2 141 3-145 11-187 (510)
268 PRK13647 cbiO cobalt transport 97.3 0.00016 3.4E-09 67.3 3.5 142 3-145 4-185 (274)
269 cd03225 ABC_cobalt_CbiO_domain 97.3 0.00022 4.7E-09 63.7 4.2 37 16-52 14-50 (211)
270 TIGR03015 pepcterm_ATPase puta 97.3 0.0018 3.9E-08 60.1 10.5 28 26-53 39-67 (269)
271 PRK11300 livG leucine/isoleuci 97.3 0.00013 2.9E-09 67.1 2.9 50 3-52 5-54 (255)
272 COG0411 LivG ABC-type branched 97.3 1.6E-05 3.4E-10 70.2 -3.1 49 2-50 3-51 (250)
273 cd03263 ABC_subfamily_A The AB 97.3 0.00024 5.2E-09 63.8 4.5 46 7-52 4-51 (220)
274 PRK10938 putative molybdenum t 97.3 0.00017 3.6E-09 73.2 3.7 52 1-52 1-52 (490)
275 PRK11831 putative ABC transpor 97.3 0.0001 2.2E-09 68.5 2.0 50 3-52 7-56 (269)
276 PRK15112 antimicrobial peptide 97.3 0.00017 3.6E-09 67.0 3.4 50 3-52 4-62 (267)
277 PRK09452 potA putrescine/sperm 97.3 0.00013 2.8E-09 70.8 2.7 142 3-146 14-192 (375)
278 cd03224 ABC_TM1139_LivF_branch 97.3 0.00013 2.9E-09 65.6 2.7 44 8-51 5-48 (222)
279 cd03265 ABC_DrrA DrrA is the A 97.3 0.00026 5.6E-09 63.6 4.5 45 8-52 5-49 (220)
280 cd03231 ABC_CcmA_heme_exporter 97.3 0.0003 6.5E-09 62.3 4.8 46 7-52 4-49 (201)
281 cd03251 ABCC_MsbA MsbA is an e 97.3 0.00026 5.7E-09 64.2 4.5 36 17-52 16-51 (234)
282 cd03218 ABC_YhbG The ABC trans 97.3 0.00036 7.8E-09 63.2 5.3 45 8-52 5-49 (232)
283 TIGR02323 CP_lyasePhnK phospho 97.3 0.00024 5.2E-09 65.3 4.2 50 3-52 3-52 (253)
284 TIGR02324 CP_lyasePhnL phospho 97.3 0.00025 5.4E-09 63.9 4.2 49 4-52 2-57 (224)
285 cd03296 ABC_CysA_sulfate_impor 97.3 0.00017 3.6E-09 65.7 3.1 49 4-52 3-51 (239)
286 cd03250 ABCC_MRP_domain1 Domai 97.3 0.00059 1.3E-08 60.5 6.5 110 17-127 19-154 (204)
287 PRK13652 cbiO cobalt transport 97.3 0.00021 4.5E-09 66.7 3.7 52 1-52 1-53 (277)
288 TIGR03608 L_ocin_972_ABC putat 97.3 0.00033 7.1E-09 62.2 4.7 42 11-52 6-47 (206)
289 PRK09580 sufC cysteine desulfu 97.3 0.00034 7.5E-09 64.1 5.0 49 4-52 2-50 (248)
290 PRK10418 nikD nickel transport 97.3 0.00035 7.6E-09 64.3 5.0 49 3-52 4-52 (254)
291 PRK11153 metN DL-methionine tr 97.3 0.0002 4.4E-09 68.8 3.6 143 4-146 2-188 (343)
292 cd03261 ABC_Org_Solvent_Resist 97.3 0.00019 4.1E-09 65.2 3.2 45 8-52 5-49 (235)
293 PF09848 DUF2075: Uncharacteri 97.3 0.00056 1.2E-08 66.1 6.6 91 30-129 2-94 (352)
294 TIGR03411 urea_trans_UrtD urea 97.3 0.00017 3.8E-09 65.8 2.9 50 3-52 2-51 (242)
295 TIGR03410 urea_trans_UrtE urea 97.3 0.00016 3.5E-09 65.4 2.5 46 7-52 4-49 (230)
296 COG4586 ABC-type uncharacteriz 97.3 0.0011 2.4E-08 59.6 7.6 51 19-69 40-90 (325)
297 TIGR01189 ccmA heme ABC export 97.2 0.00022 4.7E-09 63.0 3.2 43 10-52 7-49 (198)
298 PRK04296 thymidine kinase; Pro 97.2 0.0006 1.3E-08 59.7 5.9 37 29-67 2-38 (190)
299 cd03294 ABC_Pro_Gly_Bertaine T 97.2 0.00067 1.5E-08 63.0 6.6 47 100-146 160-208 (269)
300 PRK13634 cbiO cobalt transport 97.2 0.00035 7.5E-09 65.6 4.7 143 4-146 3-193 (290)
301 TIGR02314 ABC_MetN D-methionin 97.2 0.00026 5.5E-09 67.8 3.8 143 4-146 2-188 (343)
302 cd03254 ABCC_Glucan_exporter_l 97.2 0.00038 8.3E-09 62.9 4.8 47 6-52 5-52 (229)
303 COG1101 PhnK ABC-type uncharac 97.2 0.0023 4.9E-08 55.7 9.0 35 114-148 162-198 (263)
304 TIGR03740 galliderm_ABC gallid 97.2 0.00029 6.3E-09 63.4 3.9 138 8-145 5-171 (223)
305 COG1135 AbcC ABC-type metal io 97.2 0.00033 7.2E-09 64.1 4.2 142 4-147 2-190 (339)
306 PRK12727 flagellar biosynthesi 97.2 0.003 6.6E-08 62.9 11.1 28 26-53 347-374 (559)
307 COG0488 Uup ATPase components 97.2 0.00041 8.8E-09 69.9 5.1 53 1-53 1-53 (530)
308 PRK10762 D-ribose transporter 97.2 0.00055 1.2E-08 69.6 6.1 140 3-145 4-188 (501)
309 TIGR02868 CydC thiol reductant 97.2 0.00034 7.4E-09 71.7 4.6 45 9-53 340-385 (529)
310 TIGR02782 TrbB_P P-type conjug 97.2 0.0025 5.4E-08 59.9 10.0 92 20-128 123-214 (299)
311 cd03295 ABC_OpuCA_Osmoprotecti 97.2 0.0004 8.7E-09 63.4 4.6 139 8-146 5-183 (242)
312 TIGR02211 LolD_lipo_ex lipopro 97.2 0.00042 9.2E-09 62.3 4.7 36 17-52 19-54 (221)
313 PRK13641 cbiO cobalt transport 97.2 0.00044 9.5E-09 64.9 4.9 141 4-144 3-191 (287)
314 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.2 0.00042 9.1E-09 62.4 4.6 137 6-145 25-189 (224)
315 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.0022 4.8E-08 58.6 9.3 121 26-146 22-163 (246)
316 PRK14723 flhF flagellar biosyn 97.2 0.0046 1E-07 64.5 12.5 91 28-131 184-276 (767)
317 PRK14721 flhF flagellar biosyn 97.2 0.0046 9.9E-08 60.5 11.9 89 27-128 189-279 (420)
318 PRK10619 histidine/lysine/argi 97.2 0.0003 6.5E-09 64.9 3.5 50 3-52 5-54 (257)
319 PRK08727 hypothetical protein; 97.2 0.0019 4.2E-08 58.5 8.7 36 29-66 41-76 (233)
320 PRK06995 flhF flagellar biosyn 97.2 0.003 6.4E-08 62.8 10.6 88 28-128 255-344 (484)
321 TIGR01166 cbiO cobalt transpor 97.2 0.0029 6.3E-08 55.3 9.6 46 100-145 127-174 (190)
322 cd03256 ABC_PhnC_transporter A 97.2 0.00029 6.3E-09 64.2 3.4 45 8-52 5-50 (241)
323 PRK11308 dppF dipeptide transp 97.2 0.0004 8.6E-09 66.3 4.3 144 2-146 4-202 (327)
324 PRK13648 cbiO cobalt transport 97.2 0.00061 1.3E-08 63.3 5.5 50 3-52 7-58 (269)
325 TIGR02788 VirB11 P-type DNA tr 97.2 0.0012 2.7E-08 62.4 7.6 32 22-53 137-168 (308)
326 PRK13643 cbiO cobalt transport 97.2 0.00049 1.1E-08 64.5 4.8 48 5-52 3-55 (288)
327 PRK11607 potG putrescine trans 97.2 0.00017 3.8E-09 70.0 1.8 142 3-146 19-197 (377)
328 PRK09183 transposase/IS protei 97.2 0.0041 8.8E-08 57.2 10.7 39 26-66 99-137 (259)
329 PRK13635 cbiO cobalt transport 97.2 0.0004 8.7E-09 64.8 4.1 50 3-52 5-56 (279)
330 PRK07952 DNA replication prote 97.2 0.0058 1.3E-07 55.4 11.5 92 30-148 100-191 (244)
331 PRK06731 flhF flagellar biosyn 97.2 0.01 2.2E-07 54.8 13.1 25 28-52 74-98 (270)
332 PRK13639 cbiO cobalt transport 97.1 0.00051 1.1E-08 64.0 4.7 47 5-51 3-50 (275)
333 PRK10416 signal recognition pa 97.1 0.012 2.6E-07 55.8 13.9 94 29-131 114-209 (318)
334 PRK13826 Dtr system oriT relax 97.1 0.12 2.5E-06 56.7 22.7 63 11-75 378-441 (1102)
335 TIGR03522 GldA_ABC_ATP gliding 97.1 0.00029 6.4E-09 66.5 2.9 48 5-52 4-51 (301)
336 PRK13632 cbiO cobalt transport 97.1 0.00049 1.1E-08 63.9 4.3 143 3-145 7-189 (271)
337 PRK11147 ABC transporter ATPas 97.1 0.0003 6.6E-09 73.5 3.1 52 1-52 1-52 (635)
338 cd03233 ABC_PDR_domain1 The pl 97.1 0.0033 7.2E-08 55.6 9.3 123 17-146 21-166 (202)
339 PRK09700 D-allose transporter 97.1 0.00079 1.7E-08 68.6 6.0 140 3-145 5-192 (510)
340 COG1118 CysA ABC-type sulfate/ 97.1 0.00026 5.5E-09 64.7 2.1 48 4-51 3-50 (345)
341 cd03244 ABCC_MRP_domain2 Domai 97.1 0.001 2.2E-08 59.8 6.0 47 6-52 5-53 (221)
342 PRK10253 iron-enterobactin tra 97.1 0.00025 5.4E-09 65.7 2.0 50 3-52 7-56 (265)
343 TIGR01188 drrA daunorubicin re 97.1 0.00082 1.8E-08 63.5 5.5 46 100-145 124-171 (302)
344 PRK06835 DNA replication prote 97.1 0.012 2.6E-07 56.0 13.3 37 28-66 182-218 (329)
345 TIGR03771 anch_rpt_ABC anchore 97.1 0.0052 1.1E-07 55.3 10.4 46 100-145 113-160 (223)
346 PRK13633 cobalt transporter AT 97.1 0.00073 1.6E-08 63.1 5.0 50 3-52 4-59 (280)
347 PRK11288 araG L-arabinose tran 97.1 0.00067 1.4E-08 69.0 5.1 141 2-145 3-187 (501)
348 TIGR02769 nickel_nikE nickel i 97.1 0.00049 1.1E-08 63.7 3.7 36 17-52 25-60 (265)
349 PRK11819 putative ABC transpor 97.1 0.00035 7.6E-09 71.9 2.9 52 2-53 5-57 (556)
350 TIGR03005 ectoine_ehuA ectoine 97.1 0.00033 7.3E-09 64.3 2.5 45 8-52 5-49 (252)
351 PF00004 AAA: ATPase family as 97.1 0.0014 2.9E-08 53.4 5.9 22 32-53 1-22 (132)
352 PF02456 Adeno_IVa2: Adenoviru 97.1 0.00056 1.2E-08 62.4 3.8 41 32-72 90-130 (369)
353 PRK13651 cobalt transporter AT 97.0 0.00056 1.2E-08 64.6 4.0 49 4-52 3-56 (305)
354 PRK13645 cbiO cobalt transport 97.0 0.00076 1.7E-08 63.3 4.9 142 5-146 8-198 (289)
355 cd01120 RecA-like_NTPases RecA 97.0 0.0021 4.5E-08 54.3 7.2 34 32-67 2-35 (165)
356 cd03298 ABC_ThiQ_thiamine_tran 97.0 0.00042 9E-09 61.8 2.9 32 21-52 16-47 (211)
357 TIGR03258 PhnT 2-aminoethylpho 97.0 0.00033 7.2E-09 67.6 2.4 140 5-146 7-185 (362)
358 PRK12724 flagellar biosynthesi 97.0 0.0098 2.1E-07 57.8 12.2 86 29-129 223-310 (432)
359 PRK15064 ABC transporter ATP-b 97.0 0.0003 6.5E-09 72.0 1.9 49 4-52 2-50 (530)
360 PRK15056 manganese/iron transp 97.0 0.00068 1.5E-08 63.0 4.2 50 3-52 6-56 (272)
361 PF05621 TniB: Bacterial TniB 97.0 0.0046 1E-07 57.1 9.4 106 30-146 62-177 (302)
362 PRK13646 cbiO cobalt transport 97.0 0.0049 1.1E-07 57.7 9.9 142 5-146 4-193 (286)
363 PRK13649 cbiO cobalt transport 97.0 0.00054 1.2E-08 64.0 3.4 48 5-52 4-56 (280)
364 PRK13636 cbiO cobalt transport 97.0 0.00084 1.8E-08 62.8 4.7 50 3-52 5-55 (283)
365 COG1484 DnaC DNA replication p 97.0 0.011 2.5E-07 54.1 11.9 93 25-144 101-196 (254)
366 cd03267 ABC_NatA_like Similar 97.0 0.0016 3.4E-08 59.3 6.3 37 16-52 34-70 (236)
367 PRK05642 DNA replication initi 97.0 0.0046 9.9E-08 56.0 9.3 36 30-67 46-81 (234)
368 cd03300 ABC_PotA_N PotA is an 97.0 0.0008 1.7E-08 61.0 4.4 138 8-146 5-178 (232)
369 PRK10536 hypothetical protein; 97.0 0.0012 2.7E-08 59.6 5.4 58 13-70 58-115 (262)
370 PRK10851 sulfate/thiosulfate t 97.0 0.00038 8.3E-09 67.0 2.3 141 4-146 3-184 (353)
371 TIGR00968 3a0106s01 sulfate AB 97.0 0.00056 1.2E-08 62.2 3.3 45 8-52 5-49 (237)
372 PRK06893 DNA replication initi 97.0 0.0035 7.5E-08 56.6 8.4 23 30-52 40-62 (229)
373 PRK10522 multidrug transporter 97.0 0.0013 2.9E-08 67.5 6.4 119 7-127 326-476 (547)
374 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.0 0.001 2.3E-08 60.5 5.0 36 17-52 17-52 (238)
375 COG1129 MglA ABC-type sugar tr 97.0 0.0014 3E-08 64.8 6.0 49 2-50 7-55 (500)
376 PLN03073 ABC transporter F fam 97.0 0.00044 9.6E-09 72.7 2.8 49 3-51 177-225 (718)
377 PRK13644 cbiO cobalt transport 97.0 0.00094 2E-08 62.2 4.7 48 5-52 3-51 (274)
378 PRK13637 cbiO cobalt transport 97.0 0.001 2.2E-08 62.4 4.8 142 4-146 3-192 (287)
379 PRK10771 thiQ thiamine transpo 97.0 0.00062 1.3E-08 61.7 3.3 46 5-52 3-48 (232)
380 PRK13640 cbiO cobalt transport 97.0 0.00067 1.4E-08 63.4 3.6 50 3-52 5-56 (282)
381 PRK13851 type IV secretion sys 96.9 0.004 8.7E-08 59.5 8.8 47 22-71 155-201 (344)
382 PRK14956 DNA polymerase III su 96.9 0.0022 4.9E-08 63.3 7.3 30 24-53 32-64 (484)
383 PRK13900 type IV secretion sys 96.9 0.0035 7.6E-08 59.7 8.5 46 23-71 154-199 (332)
384 PRK10070 glycine betaine trans 96.9 0.0012 2.5E-08 64.6 5.2 48 99-146 163-212 (400)
385 TIGR02982 heterocyst_DevA ABC 96.9 0.00089 1.9E-08 60.1 4.1 36 17-52 19-54 (220)
386 PF13173 AAA_14: AAA domain 96.9 0.0061 1.3E-07 49.6 8.7 26 29-54 2-27 (128)
387 COG1137 YhbG ABC-type (unclass 96.9 0.00011 2.4E-09 62.9 -1.7 46 1-46 2-47 (243)
388 PRK08084 DNA replication initi 96.9 0.0044 9.5E-08 56.2 8.5 38 28-67 44-81 (235)
389 PRK08903 DnaA regulatory inact 96.9 0.006 1.3E-07 55.0 9.2 25 28-52 41-65 (227)
390 TIGR01186 proV glycine betaine 96.9 0.0014 3E-08 63.3 5.2 49 98-146 127-177 (363)
391 KOG0391 SNF2 family DNA-depend 96.9 0.0071 1.5E-07 64.2 10.5 114 252-389 1274-1389(1958)
392 PRK13631 cbiO cobalt transport 96.9 0.0011 2.4E-08 63.0 4.3 50 3-52 21-75 (320)
393 COG3845 ABC-type uncharacteriz 96.9 0.0028 6.1E-08 61.7 7.0 141 2-147 3-189 (501)
394 PRK10636 putative ABC transpor 96.9 0.00044 9.5E-09 72.2 1.6 140 4-144 313-476 (638)
395 PRK10636 putative ABC transpor 96.9 0.00093 2E-08 69.8 4.0 49 4-52 2-50 (638)
396 PRK00149 dnaA chromosomal repl 96.8 0.0075 1.6E-07 60.4 10.3 38 30-67 149-186 (450)
397 PRK00771 signal recognition pa 96.8 0.021 4.5E-07 56.4 13.1 92 30-132 96-189 (437)
398 TIGR01425 SRP54_euk signal rec 96.8 0.018 4E-07 56.4 12.5 98 30-136 101-200 (429)
399 cd03252 ABCC_Hemolysin The ABC 96.8 0.00099 2.2E-08 60.6 3.7 36 17-52 16-51 (237)
400 cd03288 ABCC_SUR2 The SUR doma 96.8 0.0015 3.2E-08 60.3 4.8 49 4-52 20-70 (257)
401 TIGR03719 ABC_ABC_ChvD ATP-bin 96.8 0.00055 1.2E-08 70.4 2.1 141 4-144 323-489 (552)
402 COG4988 CydD ABC-type transpor 96.8 0.0022 4.8E-08 63.7 6.2 137 8-145 325-503 (559)
403 COG0553 HepA Superfamily II DN 96.8 0.0032 7E-08 68.6 8.2 106 256-388 713-823 (866)
404 cd03369 ABCC_NFT1 Domain 2 of 96.8 0.00089 1.9E-08 59.5 3.1 48 5-52 8-57 (207)
405 PRK13642 cbiO cobalt transport 96.8 0.0008 1.7E-08 62.7 2.8 143 3-146 4-188 (277)
406 PRK11747 dinG ATP-dependent DN 96.8 0.0026 5.6E-08 67.0 6.9 64 11-77 22-96 (697)
407 PF00580 UvrD-helicase: UvrD/R 96.8 0.0019 4.1E-08 61.2 5.4 67 16-84 2-70 (315)
408 TIGR01277 thiQ thiamine ABC tr 96.8 0.0071 1.5E-07 54.0 8.8 126 21-146 16-176 (213)
409 TIGR03499 FlhF flagellar biosy 96.8 0.0048 1E-07 57.5 7.9 87 28-127 193-281 (282)
410 TIGR00376 DNA helicase, putati 96.8 0.0026 5.6E-08 66.1 6.6 66 14-81 157-223 (637)
411 PRK10938 putative molybdenum t 96.8 0.0012 2.5E-08 67.0 4.0 49 3-51 260-308 (490)
412 PRK13650 cbiO cobalt transport 96.8 0.00044 9.6E-09 64.5 0.9 50 3-52 4-56 (279)
413 cd03253 ABCC_ATM1_transporter 96.8 0.0061 1.3E-07 55.3 8.3 35 18-52 16-50 (236)
414 PRK07003 DNA polymerase III su 96.8 0.0087 1.9E-07 62.1 10.0 33 20-52 26-61 (830)
415 PRK15079 oligopeptide ABC tran 96.8 0.00073 1.6E-08 64.6 2.2 50 3-52 8-70 (331)
416 PRK14247 phosphate ABC transpo 96.8 0.00019 4.1E-09 65.9 -1.8 52 1-52 1-52 (250)
417 KOG1803 DNA helicase [Replicat 96.7 0.003 6.4E-08 62.8 6.3 65 14-80 185-250 (649)
418 TIGR00362 DnaA chromosomal rep 96.7 0.0096 2.1E-07 58.8 10.1 38 30-67 137-174 (405)
419 TIGR03375 type_I_sec_LssB type 96.7 0.0019 4E-08 68.5 5.4 37 17-53 479-515 (694)
420 TIGR02770 nickel_nikD nickel i 96.7 0.0049 1.1E-07 55.8 7.3 46 100-145 125-172 (230)
421 PRK09473 oppD oligopeptide tra 96.7 0.0015 3.2E-08 62.4 4.1 50 3-52 12-65 (330)
422 PRK11160 cysteine/glutathione 96.7 0.0015 3.3E-08 67.5 4.5 47 7-53 342-390 (574)
423 TIGR01420 pilT_fam pilus retra 96.7 0.0041 8.8E-08 59.8 7.1 26 28-53 121-146 (343)
424 COG4987 CydC ABC-type transpor 96.7 0.0027 5.8E-08 62.5 5.7 48 4-51 337-386 (573)
425 PRK12377 putative replication 96.7 0.036 7.9E-07 50.4 12.8 36 29-66 101-136 (248)
426 TIGR00604 rad3 DNA repair heli 96.7 0.0024 5.3E-08 67.6 6.0 71 10-81 5-82 (705)
427 cd01131 PilT Pilus retraction 96.7 0.0024 5.1E-08 56.3 5.0 23 31-53 3-25 (198)
428 TIGR00064 ftsY signal recognit 96.7 0.044 9.6E-07 50.8 13.6 95 29-132 72-168 (272)
429 COG2274 SunT ABC-type bacterio 96.7 0.00069 1.5E-08 70.7 1.8 122 6-127 474-636 (709)
430 COG4181 Predicted ABC-type tra 96.7 0.0058 1.2E-07 51.2 6.8 34 17-50 24-57 (228)
431 COG1132 MdlB ABC-type multidru 96.7 0.00064 1.4E-08 70.3 1.5 50 5-54 330-380 (567)
432 PRK11144 modC molybdate transp 96.7 0.008 1.7E-07 58.0 9.0 48 99-146 127-176 (352)
433 cd03299 ABC_ModC_like Archeal 96.7 0.0012 2.5E-08 60.0 3.0 128 18-146 14-177 (235)
434 PRK14087 dnaA chromosomal repl 96.7 0.017 3.8E-07 57.5 11.5 93 30-146 142-237 (450)
435 PRK15064 ABC transporter ATP-b 96.7 0.00094 2E-08 68.4 2.6 140 4-144 320-484 (530)
436 PRK13657 cyclic beta-1,2-gluca 96.7 0.0015 3.2E-08 67.9 3.9 46 8-53 339-385 (588)
437 PRK11176 lipid transporter ATP 96.7 0.0017 3.6E-08 67.5 4.3 46 8-53 346-393 (582)
438 COG4161 ArtP ABC-type arginine 96.7 0.0018 4E-08 53.5 3.5 47 5-51 4-50 (242)
439 COG3840 ThiQ ABC-type thiamine 96.6 0.0061 1.3E-07 51.7 6.5 52 97-148 126-179 (231)
440 COG1134 TagH ABC-type polysacc 96.6 0.002 4.3E-08 57.2 3.9 37 18-54 42-78 (249)
441 TIGR03719 ABC_ABC_ChvD ATP-bin 96.6 0.0021 4.5E-08 66.2 4.7 50 3-52 4-54 (552)
442 PRK13833 conjugal transfer pro 96.6 0.0028 6E-08 59.9 5.1 50 22-71 137-186 (323)
443 PRK06921 hypothetical protein; 96.6 0.033 7.1E-07 51.5 12.1 39 28-67 116-154 (266)
444 PRK08116 hypothetical protein; 96.6 0.048 1E-06 50.4 13.2 35 30-66 115-149 (268)
445 PRK14262 phosphate ABC transpo 96.6 0.00024 5.2E-09 65.2 -2.1 52 1-52 1-52 (250)
446 PRK11819 putative ABC transpor 96.6 0.00082 1.8E-08 69.2 1.6 141 4-144 325-491 (556)
447 TIGR03420 DnaA_homol_Hda DnaA 96.6 0.009 1.9E-07 53.8 8.2 26 28-53 37-62 (226)
448 TIGR03796 NHPM_micro_ABC1 NHPM 96.6 0.0018 3.8E-08 68.9 4.0 47 7-53 481-529 (710)
449 PRK13545 tagH teichoic acids e 96.6 0.0017 3.7E-08 64.9 3.6 120 18-144 39-189 (549)
450 COG0396 sufC Cysteine desulfur 96.6 0.00061 1.3E-08 59.7 0.4 55 1-55 1-56 (251)
451 KOG0388 SNF2 family DNA-depend 96.6 0.015 3.1E-07 58.9 9.9 118 244-389 1035-1156(1185)
452 TIGR01192 chvA glucan exporter 96.6 0.0013 2.8E-08 68.2 2.9 46 7-52 338-384 (585)
453 PRK07994 DNA polymerase III su 96.6 0.0065 1.4E-07 62.6 7.8 34 19-52 25-61 (647)
454 KOG1002 Nucleotide excision re 96.6 0.0073 1.6E-07 58.5 7.6 123 238-387 622-749 (791)
455 PF00437 T2SE: Type II/IV secr 96.6 0.0052 1.1E-07 57.1 6.6 85 25-128 123-207 (270)
456 KOG0054 Multidrug resistance-a 96.6 0.0014 3.1E-08 72.1 3.2 38 17-54 1154-1191(1381)
457 COG4167 SapF ABC-type antimicr 96.6 0.001 2.2E-08 56.2 1.5 50 1-50 2-60 (267)
458 COG1199 DinG Rad3-related DNA 96.6 0.0045 9.9E-08 65.1 6.8 69 8-79 9-83 (654)
459 PF00308 Bac_DnaA: Bacterial d 96.6 0.01 2.2E-07 53.2 8.0 91 30-146 35-128 (219)
460 PRK11174 cysteine/glutathione 96.6 0.0056 1.2E-07 63.6 7.3 37 17-53 364-400 (588)
461 PF07517 SecA_DEAD: SecA DEAD- 96.5 0.012 2.6E-07 53.9 8.4 82 8-94 71-152 (266)
462 PRK06645 DNA polymerase III su 96.5 0.014 3E-07 58.7 9.6 27 26-52 37-66 (507)
463 TIGR02857 CydD thiol reductant 96.5 0.0023 5E-08 65.6 4.1 48 6-53 323-372 (529)
464 TIGR01193 bacteriocin_ABC ABC- 96.5 0.00042 9.1E-09 73.6 -1.3 46 8-53 478-524 (708)
465 PRK08939 primosomal protein Dn 96.5 0.03 6.5E-07 52.8 11.2 36 28-65 155-190 (306)
466 PF05729 NACHT: NACHT domain 96.5 0.018 3.8E-07 48.8 9.0 25 30-54 1-25 (166)
467 TIGR01842 type_I_sec_PrtD type 96.5 0.0048 1E-07 63.4 6.5 46 8-53 321-368 (544)
468 COG1123 ATPase components of v 96.5 0.0016 3.5E-08 64.8 2.8 130 18-147 306-478 (539)
469 PRK14088 dnaA chromosomal repl 96.5 0.021 4.6E-07 56.8 10.6 38 30-67 131-168 (440)
470 PF13555 AAA_29: P-loop contai 96.5 0.0022 4.9E-08 44.3 2.6 23 28-50 22-44 (62)
471 TIGR02203 MsbA_lipidA lipid A 96.5 0.0033 7.1E-08 65.1 5.1 36 17-52 346-381 (571)
472 TIGR02142 modC_ABC molybdenum 96.5 0.0091 2E-07 57.7 7.8 47 100-146 131-179 (354)
473 TIGR00954 3a01203 Peroxysomal 96.5 0.0022 4.7E-08 67.3 3.8 138 5-142 453-626 (659)
474 PRK10790 putative multidrug tr 96.5 0.0038 8.3E-08 64.9 5.5 37 17-53 355-391 (592)
475 TIGR02204 MsbA_rel ABC transpo 96.5 0.0022 4.7E-08 66.5 3.6 37 17-53 354-390 (576)
476 PRK10867 signal recognition pa 96.5 0.05 1.1E-06 53.7 12.8 93 31-131 102-196 (433)
477 PRK14253 phosphate ABC transpo 96.5 0.00039 8.5E-09 63.7 -1.8 52 1-52 1-52 (249)
478 PLN03232 ABC transporter C fam 96.5 0.00081 1.8E-08 76.8 0.3 49 5-53 1236-1286(1495)
479 PRK14086 dnaA chromosomal repl 96.5 0.019 4.2E-07 58.5 10.1 37 31-67 316-352 (617)
480 PRK11147 ABC transporter ATPas 96.4 0.0012 2.5E-08 69.2 1.4 140 4-143 320-485 (635)
481 PRK13409 putative ATPase RIL; 96.4 0.014 3E-07 60.3 9.2 122 23-146 359-501 (590)
482 PRK13894 conjugal transfer ATP 96.4 0.0048 1E-07 58.4 5.3 53 19-71 137-190 (319)
483 PRK10982 galactose/methyl gala 96.4 0.0054 1.2E-07 62.2 6.1 46 100-145 134-181 (491)
484 PRK13546 teichoic acids export 96.4 0.018 3.9E-07 53.2 9.0 32 21-52 42-73 (264)
485 PRK12402 replication factor C 96.4 0.053 1.1E-06 52.0 12.7 38 16-53 21-60 (337)
486 PRK09087 hypothetical protein; 96.4 0.015 3.3E-07 52.3 8.3 23 29-51 44-66 (226)
487 TIGR00958 3a01208 Conjugate Tr 96.4 0.00083 1.8E-08 71.2 0.1 49 5-53 480-531 (711)
488 PRK14957 DNA polymerase III su 96.4 0.018 3.9E-07 58.4 9.5 32 21-52 27-61 (546)
489 KOG0060 Long-chain acyl-CoA tr 96.4 0.0061 1.3E-07 60.5 5.9 33 96-128 566-598 (659)
490 TIGR03797 NHPM_micro_ABC2 NHPM 96.4 0.0025 5.5E-08 67.4 3.7 48 6-53 454-503 (686)
491 TIGR03269 met_CoM_red_A2 methy 96.4 0.0046 1E-07 63.2 5.4 155 2-198 278-485 (520)
492 PRK14949 DNA polymerase III su 96.4 0.017 3.6E-07 61.2 9.4 32 22-53 28-62 (944)
493 COG2256 MGS1 ATPase related to 96.4 0.015 3.3E-07 55.4 8.2 28 25-52 42-71 (436)
494 PRK06620 hypothetical protein; 96.4 0.0098 2.1E-07 53.0 6.8 20 30-49 45-64 (214)
495 PRK11614 livF leucine/isoleuci 96.4 0.00033 7.2E-09 63.7 -2.7 52 1-52 3-54 (237)
496 cd01129 PulE-GspE PulE/GspE Th 96.4 0.025 5.4E-07 52.2 9.6 49 16-66 65-115 (264)
497 PLN03130 ABC transporter C fam 96.4 0.0008 1.7E-08 77.1 -0.3 49 5-53 1239-1289(1622)
498 PRK14962 DNA polymerase III su 96.4 0.029 6.4E-07 56.1 10.8 30 23-52 27-59 (472)
499 PRK10789 putative multidrug tr 96.4 0.003 6.4E-08 65.3 3.8 36 17-52 329-364 (569)
500 cd03278 ABC_SMC_barmotin Barmo 96.4 0.011 2.4E-07 52.0 6.9 25 25-50 19-43 (197)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-66 Score=502.38 Aligned_cols=386 Identities=60% Similarity=0.970 Sum_probs=369.2
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
...+..++..+|++.+..+++..+..++.++|+|+|||||||.+|.++...+++.+|+ +.+..|++.++...+++++..
T Consensus 40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE 118 (674)
T KOG0922|consen 40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEE 118 (674)
T ss_pred ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCc-EEeecCchHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999999999999999999999999998887 999999999999999999999
Q ss_pred hCCccCCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
.+...|..+||..+++...+..++++ .++.+|.++++++||+||||+++..+|.++.++|+.+..|
T Consensus 119 ~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R----- 193 (674)
T KOG0922|consen 119 MGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR----- 193 (674)
T ss_pred hCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-----
Confidence 99999999999999999888777644 7888899999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCC
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP 233 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (431)
++.++|++|||+|.+.+.+||++++++.++++.+|+++.|...+
T Consensus 194 ------------------------------------~~LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p 237 (674)
T KOG0922|consen 194 ------------------------------------PDLKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP 237 (674)
T ss_pred ------------------------------------CCceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC
Confidence 78899999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC
Q 014085 234 EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (431)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~ 313 (431)
..||++..+.++++++.+.++|.+|||.+..++++.++..|.+....+....+. .+.++||.|+.+++.+++.....|.
T Consensus 238 ~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~ 316 (674)
T KOG0922|consen 238 TADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGK 316 (674)
T ss_pred chhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc-eeeeecccCCHHHhhccccCCCCCc
Confidence 999999999999999999999999999999999999999999987766655555 7788999999999999999999999
Q ss_pred cEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcCc
Q 014085 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 393 (431)
Q Consensus 314 ~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~ 393 (431)
.+|++||++++..+.||+|.+|||+|++|.+.||+..++..+...|+|.++..||+|||||.++|+||++|++++|+.++
T Consensus 317 RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~ 396 (674)
T KOG0922|consen 317 RKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMP 396 (674)
T ss_pred ceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 394 ~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
+...|||.+.+|...+|+||+||++++-.|+|++||++
T Consensus 397 ~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~ 434 (674)
T KOG0922|consen 397 LQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPP 434 (674)
T ss_pred cCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCCh
Confidence 99999999999999999999999999999999999985
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-66 Score=491.62 Aligned_cols=387 Identities=58% Similarity=0.949 Sum_probs=372.0
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
.++.+.++.+|++++..+++.++.+...++|.|.|||||||.+|+++...+++++++.+.+..|++.++..+..++++..
T Consensus 255 ~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EM 334 (902)
T KOG0923|consen 255 ESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEM 334 (902)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHh
Confidence 35667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCC
Q 014085 84 GVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (431)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (431)
+...|.-+||.++++++.+..+.++ .++.+|.+..++++|+||||+++..+|.+.++++.....|
T Consensus 335 gvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R------ 408 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR------ 408 (902)
T ss_pred CcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC------
Confidence 9999999999999999888766544 7888899999999999999999999999999999999988
Q ss_pred CCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCC
Q 014085 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPE 234 (431)
Q Consensus 155 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (431)
++.++++.|||++.+.+..||++++++.++++.+|++.+|...|+
T Consensus 409 -----------------------------------pdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PE 453 (902)
T KOG0923|consen 409 -----------------------------------PDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPE 453 (902)
T ss_pred -----------------------------------CcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCc
Confidence 999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCc
Q 014085 235 PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (431)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~ 314 (431)
.+|++..+.+++.++.+.+.|.+|||....++.+.....|.+.+..+....+.+-+.++|++++.+.+..|++.-.+|..
T Consensus 454 AdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaR 533 (902)
T KOG0923|consen 454 ADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGAR 533 (902)
T ss_pred hhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCce
Confidence 99999999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred EEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhc-Cc
Q 014085 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDK-LE 393 (431)
Q Consensus 315 ~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~-~~ 393 (431)
+|++||++++..+.|++|.+|||+|++|.++|++..|+.++...|+|.++..||+|||||.|+|+||+||+...|.. +.
T Consensus 534 KVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE 613 (902)
T KOG0923|consen 534 KVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELE 613 (902)
T ss_pred eEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887754 88
Q ss_pred CCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 394 ~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
....|||.|.+|.++||.|++||+.++..||||+|||+
T Consensus 614 ~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~ 651 (902)
T KOG0923|consen 614 EMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPT 651 (902)
T ss_pred cCCCcceeeccchhHHHHHHhcCcchhcccccCCCCCh
Confidence 88889999999999999999999999999999999985
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.8e-61 Score=457.79 Aligned_cols=385 Identities=54% Similarity=0.927 Sum_probs=362.0
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
.+..++..+|+...+.+++..+.+++.++|+|.|||||||.++.++...++...| .+.+..|++.++..++++++...+
T Consensus 347 ~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~ 425 (1042)
T KOG0924|consen 347 SIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEMG 425 (1042)
T ss_pred hHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHhC
Confidence 3667888999999999999999999999999999999999999999999998877 588889999999999999999999
Q ss_pred CccCCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCC
Q 014085 85 VELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (431)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (431)
...|..+||+++++...+..+.++ ..+.+..+.++++||+||||+++.++|.++.+++.+++.|
T Consensus 426 ~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larR------- 498 (1042)
T KOG0924|consen 426 VTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR------- 498 (1042)
T ss_pred CccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhh-------
Confidence 999999999999998888776654 5556677899999999999999999999999999999988
Q ss_pred CCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCc
Q 014085 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235 (431)
Q Consensus 156 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (431)
.+.++|..|||++.+.++.|||+++.+.++++.+|+++.|...+..
T Consensus 499 ----------------------------------rdlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~e 544 (1042)
T KOG0924|consen 499 ----------------------------------RDLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVE 544 (1042)
T ss_pred ----------------------------------ccceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchH
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc-CCCceEEEEcCCCCCHHHHhhhhCcCCCCCc
Q 014085 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE-ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR 314 (431)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~-~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~ 314 (431)
||++..+...+.++...+.|.+|||.+..+.++..+..+...+.++.. ...++.|.++++.|+.+-+..+++....|..
T Consensus 545 DYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vR 624 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVR 624 (1042)
T ss_pred HHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCce
Confidence 999999999999999998999999999999999999999888776543 3468899999999999999999999999999
Q ss_pred EEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhh-hcCc
Q 014085 315 KVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF-DKLE 393 (431)
Q Consensus 315 ~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~-~~~~ 393 (431)
+++|||++++..+.+|+|.+|||+|+.|.+.|++..|+..+...|+|.+...||+|||||.|+|.||++|++..| +.+.
T Consensus 625 K~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 625 KCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred eEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999776 5599
Q ss_pred CCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 394 ~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
+...|||.|.+|.+++|+|++||+.++..|+||+|||.
T Consensus 705 ~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Ppe 742 (1042)
T KOG0924|consen 705 PSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPE 742 (1042)
T ss_pred cCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHH
Confidence 99999999999999999999999999999999999973
No 4
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-60 Score=480.78 Aligned_cols=380 Identities=53% Similarity=0.866 Sum_probs=354.3
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
++...+..+|++....++...+.....++|+|||||||||.+|.++...++. .+..+++..|++.++..+.+++++..+
T Consensus 41 ~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~-~~g~I~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 41 DILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG-IAGKIGCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred hhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc-cCCeEEecCchHHHHHHHHHHHHHHhC
Confidence 4556678899999999999999999999999999999999999999999883 345799999999999999999999999
Q ss_pred CccCCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCC
Q 014085 85 VELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (431)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (431)
..+|..+||..++++..+..++++ .+..++.+++++++|+||+|+++.++|+++.+++..+..++
T Consensus 120 ~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr------ 193 (845)
T COG1643 120 EKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR------ 193 (845)
T ss_pred CCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC------
Confidence 999999999999999887777654 66668999999999999999999999999999999887661
Q ss_pred CCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCc
Q 014085 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235 (431)
Q Consensus 156 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (431)
++.++|.||||+|.+.++++|++++++.++++.+|+++.|...+..
T Consensus 194 ----------------------------------~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~ 239 (845)
T COG1643 194 ----------------------------------DDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEA 239 (845)
T ss_pred ----------------------------------CCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCc
Confidence 4799999999999999999999999999999999999999888888
Q ss_pred ch-HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHH-HHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC
Q 014085 236 DY-LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQE-RLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (431)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~ 313 (431)
++ ++..+...+........|.+|||.+...+.+.++..|++ .+. ....+.++||.|+.+++.++++....|+
T Consensus 240 d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~ 313 (845)
T COG1643 240 DYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG------DDLEILPLYGALSAEEQVRVFEPAPGGK 313 (845)
T ss_pred chhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc------CCcEEeeccccCCHHHHHhhcCCCCCCc
Confidence 88 888888888888888899999999999999999999988 211 3688999999999999999999999999
Q ss_pred cEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcCc
Q 014085 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 393 (431)
Q Consensus 314 ~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~ 393 (431)
.+|++||+++|.+++||+|++|||+|+++.+.||+..++..+...|+|.++..||+|||||.++|+||++|++++|..++
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~ 393 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFP 393 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeccCchHHHHHHHHcCCC-CCccccCCCCCCC
Q 014085 394 DSTKPEIKRCNLSNVILQLKALGVD-DIIGFDFMEKPSR 431 (431)
Q Consensus 394 ~~~~~~~~~~~l~~~~l~l~~~~~~-~~~~~~~~~~p~~ 431 (431)
.+..|||++.||+.++|+|++||+. ++..|+|++||+.
T Consensus 394 ~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~ 432 (845)
T COG1643 394 EFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPE 432 (845)
T ss_pred cCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCCh
Confidence 9999999999999999999999995 9999999999974
No 5
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.2e-58 Score=474.99 Aligned_cols=371 Identities=36% Similarity=0.589 Sum_probs=322.4
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
.+|++.+..+++..+.++++++++||||||||+.+|.++...... +.+++++.|+++++.++.+++++..+...+..+
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 378999999999999999999999999999999999888765432 237999999999999999999888888888999
Q ss_pred eEeEeecCCCChh--------HhHH-HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHH-hhccccCCCCCCCCC
Q 014085 92 GYSIRFDDRTSTS--------TRIK-EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN-ARSKSADGHSNGNNN 161 (431)
Q Consensus 92 ~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 161 (431)
||..+.+...+.. ..+. .+..++.++++++||+||+|++...+|+++.++++... .+
T Consensus 81 Gy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr------------- 147 (812)
T PRK11664 81 GYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLR------------- 147 (812)
T ss_pred EEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC-------------
Confidence 9887765443322 2232 33345778999999999999999999999888876654 22
Q ss_pred CCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHHH
Q 014085 162 NENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDAT 241 (431)
Q Consensus 162 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (431)
++.|+++||||++.+.+++++++.+++.++++.+++++.|...+..++.+..
T Consensus 148 ----------------------------~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~ 199 (812)
T PRK11664 148 ----------------------------DDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEA 199 (812)
T ss_pred ----------------------------ccceEEEEecCCCHHHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHH
Confidence 6789999999999888999999999999999989999988877665555543
Q ss_pred HHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC
Q 014085 242 LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 321 (431)
Q Consensus 242 ~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~ 321 (431)
+...+........+++|||||++++++.+++.|.+... .++.+..+||+|++++|..+++.|++|+.+||||||
T Consensus 200 v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn 273 (812)
T PRK11664 200 VARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN 273 (812)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc
Confidence 33333333333478999999999999999999987421 267899999999999999999999999999999999
Q ss_pred ccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcCcCCCCCcee
Q 014085 322 IAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIK 401 (431)
Q Consensus 322 ~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~~~~~~~~~ 401 (431)
++++|+|||+|++|||+|+.+.+.||+..++..+...++|.++|.||+|||||.++|.||+||+++++..+.++..|||+
T Consensus 274 IAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~ 353 (812)
T PRK11664 274 IAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEIL 353 (812)
T ss_pred hHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 402 RCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 402 ~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
+.+|+.++|.+++||+.++.+|+|++||++
T Consensus 354 r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~ 383 (812)
T PRK11664 354 HSDLSGLLLELLQWGCHDPAQLSWLDQPPA 383 (812)
T ss_pred ccchHHHHHHHHHcCCCCHHhCCCCCCCCH
Confidence 999999999999999999999999999984
No 6
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.9e-58 Score=474.02 Aligned_cols=370 Identities=38% Similarity=0.581 Sum_probs=320.3
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEe
Q 014085 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (431)
+|+..+..+++..+..+++++++||||||||+.+|.++..... .+.+++++.|++.++.++.+++++..+..++..+|
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 4778889999999999999999999999999999999887653 24479999999999999999999888888888999
Q ss_pred EeEeecCCCChhH--------hHH-HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHH-hhccccCCCCCCCCCC
Q 014085 93 YSIRFDDRTSTST--------RIK-EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN-ARSKSADGHSNGNNNN 162 (431)
Q Consensus 93 ~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 162 (431)
|..+++...+..+ .+. .+..++.++++++||+||+|++..++++.+.+++.... .+
T Consensus 79 y~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr-------------- 144 (819)
T TIGR01970 79 YRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR-------------- 144 (819)
T ss_pred EEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC--------------
Confidence 8877665443322 222 33345778999999999999999999988888776654 23
Q ss_pred CCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHHHH
Q 014085 163 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATL 242 (431)
Q Consensus 163 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (431)
++.|+|+||||++.+.+.+++++++++.++++.++++++|......++....+
T Consensus 145 ---------------------------~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 145 ---------------------------EDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred ---------------------------CCceEEEEeCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHH
Confidence 67899999999998889999999999999999999999988765555443333
Q ss_pred HHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc
Q 014085 243 ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 322 (431)
Q Consensus 243 ~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~ 322 (431)
...+........+++|||||++++++.+++.|.+... .++.+..+||+|++++|..+++.|++|+.+||||||+
T Consensus 198 ~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnI 271 (819)
T TIGR01970 198 SRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNI 271 (819)
T ss_pred HHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecch
Confidence 2222222233468899999999999999999987432 2788999999999999999999999999999999999
Q ss_pred cccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcCcCCCCCceec
Q 014085 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKR 402 (431)
Q Consensus 323 ~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~~~~~~~~~~ 402 (431)
+++|+|||+|++|||+|+.+.+.||+..++..+...++|.++|.||+|||||.++|.||+||+++++..+.++..|||++
T Consensus 272 AErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r 351 (819)
T TIGR01970 272 AETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQ 351 (819)
T ss_pred HhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 403 CNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 403 ~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
.+|..++|++++||+.+...|+|++||+.
T Consensus 352 ~~L~~~~L~l~~~g~~~~~~~~~l~~P~~ 380 (819)
T TIGR01970 352 ADLSGLALELAQWGAKDPSDLRWLDAPPS 380 (819)
T ss_pred cCcHHHHHHHHHcCCCChhhCCCCCCcCH
Confidence 99999999999999999999999999984
No 7
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-56 Score=412.98 Aligned_cols=382 Identities=54% Similarity=0.867 Sum_probs=357.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
+.++++.+..+|++.++.+....+..++.++++|.||||||+.+|.+......... ..+.+..|++.++.++..+++..
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-~~v~CTQprrvaamsva~RVadE 114 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-TGVACTQPRRVAAMSVAQRVADE 114 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-cceeecCchHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999988776554 46888899999999999999999
Q ss_pred hCCccCCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
.+...|.-+||.++++.+.+..+.++ ..++++.+.+++++|+||||+++..+|.++++++.....|
T Consensus 115 MDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r----- 189 (699)
T KOG0925|consen 115 MDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR----- 189 (699)
T ss_pred hccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-----
Confidence 99999999999999999888877665 6777899999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCC
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYP 233 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (431)
++.++|.+|||++...+..|+++++++.+++ .+|++++|...+
T Consensus 190 ------------------------------------pdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~ 232 (699)
T KOG0925|consen 190 ------------------------------------PDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP 232 (699)
T ss_pred ------------------------------------CCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC
Confidence 8999999999999999999999999999999 899999999999
Q ss_pred CcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCC--
Q 014085 234 EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA-- 311 (431)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~-- 311 (431)
..|+++..+.+++.++....+|.+|||....++.++.++.+......+....+...|.++| +.++..+++....
T Consensus 233 erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~ 308 (699)
T KOG0925|consen 233 ERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKR 308 (699)
T ss_pred ChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCccc
Confidence 9999999999999999999999999999999999999999998888888888889999999 5666677766542
Q ss_pred -C--CcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhh
Q 014085 312 -G--FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENE 388 (431)
Q Consensus 312 -g--~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~ 388 (431)
| ..+|+|+|++++..+.+++|.+|||.|+.+.+.|++....+++...|+|..+.-||+|||||..+|+||++|+++.
T Consensus 309 ~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 309 NGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEA 388 (699)
T ss_pred CCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHh
Confidence 3 4689999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhc-CcCCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 389 FDK-LEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 389 ~~~-~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
++. +.+...|||++.+|..++|+||.+|+.++..||||+||+|
T Consensus 389 ~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAP 432 (699)
T KOG0925|consen 389 FEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAP 432 (699)
T ss_pred hhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCCh
Confidence 855 9999999999999999999999999999999999999986
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.9e-56 Score=470.22 Aligned_cols=373 Identities=46% Similarity=0.759 Sum_probs=325.3
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
.....+|+.....++...+..++.++|+|+|||||||.+|.++...+....+ .+++..|++.++.....++++..+..+
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~-~I~~tQPRRlAA~svA~RvA~elg~~l 139 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHG-LIGHTQPRRLAARTVAQRIAEELGTPL 139 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCc-eEecCCccHHHHHHHHHHHHHHhCCCc
Confidence 4456789999999999999999999999999999999999999876644333 688889999999999999999999999
Q ss_pred CCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCC
Q 014085 88 GQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (431)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (431)
|..+||..+++...+..+++. .+..++.+.++++||+||+|++..++++++.+++.....+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r---------- 209 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR---------- 209 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC----------
Confidence 999999888777665544332 4455678999999999999999999999999999887666
Q ss_pred CCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCc---
Q 014085 159 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP--- 235 (431)
Q Consensus 159 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 235 (431)
++.++|+||||++.+.++++|++.+++.++++.+|+++.|......
T Consensus 210 -------------------------------pdLKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~ 258 (1283)
T TIGR01967 210 -------------------------------PDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQED 258 (1283)
T ss_pred -------------------------------CCCeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccc
Confidence 7789999999999999999999999999999999999988764321
Q ss_pred ---chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC
Q 014085 236 ---DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG 312 (431)
Q Consensus 236 ---~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g 312 (431)
++.+.....+..... ...+++|||+|++.+++.+++.|.+.. .+++.+.++||+|++++|..+++.+ +
T Consensus 259 ~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~ 329 (1283)
T TIGR01967 259 DDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRN------LRHTEILPLYARLSNKEQQRVFQPH--S 329 (1283)
T ss_pred hhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcC------CCCcEEEeccCCCCHHHHHHHhCCC--C
Confidence 233333444433333 356899999999999999999998752 2356799999999999999998765 3
Q ss_pred CcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcC
Q 014085 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKL 392 (431)
Q Consensus 313 ~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~ 392 (431)
..+|||||+++++|+|||+|++|||+|+++.+.||+.+++..+...|+|.++|.||+|||||.++|+||+||+++++..+
T Consensus 330 ~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~ 409 (1283)
T TIGR01967 330 GRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSR 409 (1283)
T ss_pred CceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhh
Confidence 47999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cCCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 393 EDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 393 ~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
+++..|||++.+|..++|++++||+.++..|+|++||++
T Consensus 410 ~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~ 448 (1283)
T TIGR01967 410 PEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDP 448 (1283)
T ss_pred hhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCH
Confidence 999999999999999999999999999999999999973
No 9
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=4.2e-56 Score=468.26 Aligned_cols=372 Identities=44% Similarity=0.716 Sum_probs=319.3
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
.+..+|++...+++...+..++.++|+|+|||||||.+|.++...+....+ .+++..|++.++.....++++..+...+
T Consensus 69 ~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g-~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 69 YPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKG-LIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCC-ceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 456689999999999999999999999999999999999888776543222 5777889999999999999999988888
Q ss_pred CeEeEeEeecCCCCh--------hHhHH-HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCC
Q 014085 89 QRVGYSIRFDDRTST--------STRIK-EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGN 159 (431)
Q Consensus 89 ~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (431)
..+||..+++...+. ...+. .+..++.++++++||+||||++..++++++.+++.....+
T Consensus 148 ~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r----------- 216 (1294)
T PRK11131 148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR----------- 216 (1294)
T ss_pred ceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcC-----------
Confidence 899998776654432 23332 4445678999999999999999999999998888876554
Q ss_pred CCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCc----
Q 014085 160 NNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP---- 235 (431)
Q Consensus 160 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 235 (431)
++.|+|+||||++.+.++++|++.+++.++++.+++++.|......
T Consensus 217 ------------------------------pdlKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~ 266 (1294)
T PRK11131 217 ------------------------------PDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDT 266 (1294)
T ss_pred ------------------------------CCceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchh
Confidence 6789999999999999999999999999999999999988765432
Q ss_pred --chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC
Q 014085 236 --DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF 313 (431)
Q Consensus 236 --~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~ 313 (431)
+++...+..+.... ..+.+++||||+++.+++.+++.|.+. ..+...+.++||++++++|..+++. .|.
T Consensus 267 ~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~ 337 (1294)
T PRK11131 267 ERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQS--HSG 337 (1294)
T ss_pred hHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhc------CCCcceEeecccCCCHHHHHHHhcc--cCC
Confidence 23333333333322 345789999999999999999999875 1224568899999999999999986 578
Q ss_pred cEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcCc
Q 014085 314 RKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLE 393 (431)
Q Consensus 314 ~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~ 393 (431)
.+||||||++++|+|||+|++|||+|+++.+.||+..++..+...|+|.++|.||+|||||.++|.||+||++++|..++
T Consensus 338 rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~ 417 (1294)
T PRK11131 338 RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRP 417 (1294)
T ss_pred eeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 394 DSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 394 ~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
++..|||++.+|..++|+++++|+.++..|+|++||++
T Consensus 418 ~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~ 455 (1294)
T PRK11131 418 EFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDK 455 (1294)
T ss_pred cccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCH
Confidence 99999999999999999999999999999999999974
No 10
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-53 Score=411.43 Aligned_cols=395 Identities=46% Similarity=0.748 Sum_probs=352.2
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC----CcEEEEeCchhHHHHHHhHHHH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
++.+.|..+|+..-.+++..++.++..++|||.|||||||.+|+++...++... +..+.+..|++.++..+.++++
T Consensus 247 EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa 326 (1172)
T KOG0926|consen 247 EIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVA 326 (1172)
T ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHH
Confidence 566778889999999999999999999999999999999999999999998655 5578999999999999999999
Q ss_pred HHhCCccCCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccc
Q 014085 81 EESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~ 151 (431)
...+. .+..++|.+++++.....+.++ .+..+..+.++++||+||||+++.++|.+.+++-+.+..|+.+
T Consensus 327 ~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 327 FELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred HHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHH
Confidence 98887 7899999999998877766654 5556677899999999999999999999999999999877443
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH---hhhCC-CceEEecCceeeeeE
Q 014085 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGC-AKAVHVQGRQFPVEI 227 (431)
Q Consensus 152 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~---~~~~~-~~~~~~~~~~~~~~~ 227 (431)
.... ..-.+.++|+||||+-..++. .+|.. +|++.++.+++|+.+
T Consensus 406 ~ke~-------------------------------~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsI 454 (1172)
T KOG0926|consen 406 YKEQ-------------------------------CQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSI 454 (1172)
T ss_pred hhhh-------------------------------cccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEE
Confidence 3110 011578999999999777776 45654 569999999999999
Q ss_pred eeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHh----------------------------
Q 014085 228 LYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL---------------------------- 279 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~---------------------------- 279 (431)
+|......||....+.....++...++|.+|||+....+++.|+..|++.++
T Consensus 455 HF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~ 534 (1172)
T KOG0926|consen 455 HFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDS 534 (1172)
T ss_pred EeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccC
Confidence 9999999999999999999999999999999999999999999999999843
Q ss_pred --------------------------------------------------------------cCCcCCCceEEEEcCCCC
Q 014085 280 --------------------------------------------------------------QLPEASRKLVTVPIFSSL 297 (431)
Q Consensus 280 --------------------------------------------------------------~~~~~~~~~~v~~lhg~~ 297 (431)
........+.|.++|+=+
T Consensus 535 ~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLL 614 (1172)
T KOG0926|consen 535 NKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLL 614 (1172)
T ss_pred cccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhc
Confidence 000012245789999999
Q ss_pred CHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC
Q 014085 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (431)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~ 377 (431)
+.+++.+++.....|..-.+|||++++..+.||+|.+|||+|..++..||..+|+..+...++|.++.-||+|||||.|+
T Consensus 615 s~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp 694 (1172)
T KOG0926|consen 615 STEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP 694 (1172)
T ss_pred CHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeChhhhh-cCcCCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 378 GKCFRLYPENEFD-KLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 378 G~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
|+||+||+..=|+ .+..++.|||++.+.+.++|++|+|+|.++..|+|++||-+
T Consensus 695 GHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~ 749 (1172)
T KOG0926|consen 695 GHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDR 749 (1172)
T ss_pred CceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccH
Confidence 9999999988775 69999999999999999999999999999999999999963
No 11
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=397.13 Aligned_cols=386 Identities=42% Similarity=0.654 Sum_probs=335.4
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-CCcEEEEeCchhHHHHHHhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
+.++...+..+|.+..+++++..+.+...++|+|.|||||||.+|++++...... ....+++..|++..+..++++++.
T Consensus 162 ~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ 241 (924)
T KOG0920|consen 162 YKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAK 241 (924)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999998765322 345788999999999999999998
Q ss_pred HhCCccCCeEeEeEeecCCCChhHh---------HHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcccc
Q 014085 82 ESGVELGQRVGYSIRFDDRTSTSTR---------IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 152 (431)
..+...+..+||..+.+...+..++ ++.+..++.+.++.++|+||+|+++.++|+++-+++.++..+
T Consensus 242 ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~---- 317 (924)
T KOG0920|consen 242 ERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN---- 317 (924)
T ss_pred HhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC----
Confidence 8888889999999887765544433 335556788999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecC
Q 014085 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (431)
Q Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (431)
++.++|+||||+|.+.+.+||++++++.++++.+|+..+|...
T Consensus 318 -------------------------------------p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLED 360 (924)
T KOG0920|consen 318 -------------------------------------PDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLED 360 (924)
T ss_pred -------------------------------------CCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHH
Confidence 8999999999999999999999999999999999997776543
Q ss_pred C-----------------Cc-------------chHHHHHHHHHH-HhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC
Q 014085 233 P-----------------EP-------------DYLDATLITIFQ-VHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 281 (431)
Q Consensus 233 ~-----------------~~-------------~~~~~~~~~~~~-~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~ 281 (431)
. .. +....++..+.. ++.....|.+|||.|+.+++..++..|.......
T Consensus 361 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~ 440 (924)
T KOG0920|consen 361 ILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA 440 (924)
T ss_pred HHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc
Confidence 0 00 111122333333 3344557889999999999999999997653322
Q ss_pred CcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecC
Q 014085 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (431)
Q Consensus 282 ~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s 361 (431)
. ...+.+.++|+.|+.++++.++.....|..+|++||++++.+|.|++|.+|||+|..|.++||+..++..+...+.|
T Consensus 441 ~--~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvS 518 (924)
T KOG0920|consen 441 D--SLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVS 518 (924)
T ss_pred c--ccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecc
Confidence 2 14578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCcEEEEeeChhhhhcCcC-CCCCceeccCchHHHHHHHHcCCCCCccc--cCCCCCCC
Q 014085 362 KAQALQRSGRAGREGPGKCFRLYPENEFDKLED-STKPEIKRCNLSNVILQLKALGVDDIIGF--DFMEKPSR 431 (431)
Q Consensus 362 ~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~l~~~~~~~~~~~--~~~~~p~~ 431 (431)
.+...||+|||||..+|.||++|+...|+.+.. ++.|||+|.+|++++|++|.+++..+..| ..++||+.
T Consensus 519 kAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~ 591 (924)
T KOG0920|consen 519 KANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPA 591 (924)
T ss_pred ccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCCh
Confidence 999999999999999999999999999999777 99999999999999999999999888877 88999973
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.5e-47 Score=387.92 Aligned_cols=351 Identities=24% Similarity=0.319 Sum_probs=256.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc-----cc--------ccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA-----GF--------CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~-----~~--------~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
.+|+++++.+.+|++++++|+||||||+++|.++... .. ......++++.|+++++.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999988777542 10 1134579999999999999998887766
Q ss_pred CCccCCeEeEeEeecCCCCh--hHhH---H-----HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 84 GVELGQRVGYSIRFDDRTST--STRI---K-----EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~--~~~~---~-----~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
+........+.....+.... .+.. . ..+..+.+.+++++|+||||+++..++.++.+++.....
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~------ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK------ 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccchhHHHHHHHHhhhh------
Confidence 54211111112222222111 0000 0 012224578899999999999999999999888765432
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhhhCCCceEEecCce-eeeeEeee
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKAVHVQGRQ-FPVEILYT 230 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~ 230 (431)
..|+++||||+ +.+.+.+|++++..+.++++. ++++..|.
T Consensus 321 -------------------------------------~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 321 -------------------------------------IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYV 363 (675)
T ss_pred -------------------------------------cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEe
Confidence 23799999999 566788999999889888774 78888876
Q ss_pred cCCC-----cchHHHHHHHHHHHhh---cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHH
Q 014085 231 LYPE-----PDYLDATLITIFQVHL---DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (431)
Q Consensus 231 ~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r 302 (431)
.... .++.+.....+...+. ..+++++||||+++++|+.+++.|.+.. +++.+.++||++++.
T Consensus 364 ~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~-- 434 (675)
T PHA02653 364 KNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNI-- 434 (675)
T ss_pred ecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHH--
Confidence 4432 1222221111222221 2235789999999999999999998752 268899999999985
Q ss_pred hhhhCcC-CCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEE
Q 014085 303 MRVFAPA-AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCF 381 (431)
Q Consensus 303 ~~i~~~f-~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~ 381 (431)
++.++.| ++|+.+||||||++|+|+|||+|++|||+|+++.+. +..+. ..+.|.++|+||+|||||.++|.||
T Consensus 435 eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~ 508 (675)
T PHA02653 435 DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYV 508 (675)
T ss_pred HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEE
Confidence 3555666 789999999999999999999999999999766553 22222 2488999999999999999999999
Q ss_pred EeeChhhhhcCcCCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 382 RLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
+||+++++. + .+++...+|..++|++++||+. ...++|++||++
T Consensus 509 rLyt~~~~~---p--I~ri~~~~L~~~vL~lk~~g~~-~~~~~~ldpP~~ 552 (675)
T PHA02653 509 YFYDLDLLK---P--IKRIDSEFLHNYILYAKYFNLT-LPEDLFVIPSNL 552 (675)
T ss_pred EEECHHHhH---H--HHHHhHHHHHHHHHHHHHcCCC-CcccccCCCCCH
Confidence 999998751 1 3333334489999999999994 455679999974
No 13
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-47 Score=367.29 Aligned_cols=320 Identities=21% Similarity=0.291 Sum_probs=248.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccc-----ccCCcEEEEeCchhHHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~-----~~~~~~v~v~~p~~~l~~~~ 75 (431)
...++..+.+-.++|+|.+.|+.++.|++++.+|.|||||| |++|.++..... ..+++.++|+.|+|+++.|+
T Consensus 102 ~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV 181 (519)
T KOG0331|consen 102 LMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQV 181 (519)
T ss_pred HHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHH
Confidence 34566778888999999999999999999999999999999 788888765431 23467899999999999999
Q ss_pred hHHHHHHhCCccCCeEeEeE-------------eecCCCChhHhHHHHhccc--CCCCCcEEEEecCCcCccchHHHHHH
Q 014085 76 AKRVAEESGVELGQRVGYSI-------------RFDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGL 140 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~~~lViDEah~~~~~~~~~~~~ 140 (431)
...+.++........+..-. ..+....++.++..++... .++++.++|+|||
T Consensus 182 ~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA------------- 248 (519)
T KOG0331|consen 182 QAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA------------- 248 (519)
T ss_pred HHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH-------------
Confidence 99877766543321222110 1112334445555555443 3679999999999
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCceEE
Q 014085 141 LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVH 217 (431)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~~~~ 217 (431)
|.|+|++|.++++.++..+.. ++.|.+++|||+ ..+.++ +|+.++..+.
T Consensus 249 -------------------------DrMldmGFe~qI~~Il~~i~~---~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ 300 (519)
T KOG0331|consen 249 -------------------------DRMLDMGFEPQIRKILSQIPR---PDRQTLMFSATWPKEVRQLAEDFLNNPIQIN 300 (519)
T ss_pred -------------------------HhhhccccHHHHHHHHHhcCC---CcccEEEEeeeccHHHHHHHHHHhcCceEEE
Confidence 899999999999999999964 444899999999 666666 6777665555
Q ss_pred ecCce-----eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEE
Q 014085 218 VQGRQ-----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (431)
Q Consensus 218 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (431)
+.... ..+............ ...+..++........+++||||+|++.|++|+..|... ++++.+
T Consensus 301 ig~~~~~~a~~~i~qive~~~~~~K-~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~---------~~~a~~ 370 (519)
T KOG0331|consen 301 VGNKKELKANHNIRQIVEVCDETAK-LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK---------GWPAVA 370 (519)
T ss_pred ecchhhhhhhcchhhhhhhcCHHHH-HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc---------Ccceee
Confidence 54331 222333222232222 233334444444566889999999999999999999987 899999
Q ss_pred cCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhccc
Q 014085 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (431)
Q Consensus 293 lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~ 372 (431)
+||+.++.+|..+++.|++|...||||||+++||+|+|+|++||| || +|.+.++|+||+|||
T Consensus 371 iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------yd----------fP~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 371 IHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YD----------FPNNVEDYVHRIGRT 432 (519)
T ss_pred ecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CC----------CCCCHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999 88 699999999999999
Q ss_pred CCCC-CcEEEEeeChhhhhc
Q 014085 373 GREG-PGKCFRLYPENEFDK 391 (431)
Q Consensus 373 gR~~-~G~~~~l~~~~~~~~ 391 (431)
||+| .|.++.|++..++..
T Consensus 433 GRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 433 GRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ccCCCCceEEEEEeHHHHHH
Confidence 9988 999999999876544
No 14
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-44 Score=323.61 Aligned_cols=313 Identities=20% Similarity=0.270 Sum_probs=240.8
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
+++..+..+...++++|.++++.++.|++++..|.|||||| +++|.+..... ..+...++|+.|+++++.|+.+++.
T Consensus 72 L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe 150 (476)
T KOG0330|consen 72 LLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFE 150 (476)
T ss_pred HHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHH
Confidence 45566666778899999999999999999999999999999 44444433222 2234589999999999999988764
Q ss_pred HHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 143 (431)
. .+...+..+....+ ....+.++.++...+.+ ..+..++++|+|||
T Consensus 151 ~-Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA---------------- 213 (476)
T KOG0330|consen 151 A-LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA---------------- 213 (476)
T ss_pred H-hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH----------------
Confidence 4 44444444332221 22234555555555543 23668999999999
Q ss_pred HHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHh-hhCCCceEEecC
Q 014085 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSE-YFGCAKAVHVQG 220 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~-~~~~~~~~~~~~ 220 (431)
|.++|+.|+..+..++..++ ...|.+++|||+ ..+.+.. -+.++..+.+..
T Consensus 214 ----------------------DrlLd~dF~~~ld~ILk~ip----~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ 267 (476)
T KOG0330|consen 214 ----------------------DRLLDMDFEEELDYILKVIP----RERQTFLFSATMTKKVRKLQRASLDNPVKVAVSS 267 (476)
T ss_pred ----------------------HhhhhhhhHHHHHHHHHhcC----ccceEEEEEeecchhhHHHHhhccCCCeEEeccc
Confidence 79999999888888888777 678999999999 5666663 334444444443
Q ss_pred ce---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCC
Q 014085 221 RQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (431)
Q Consensus 221 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~ 297 (431)
.. ..+.++|...+..+....+ +.+.....++.+||||+|...++.++-.|+.. |+.+..+||+|
T Consensus 268 ky~tv~~lkQ~ylfv~~k~K~~yL----V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l---------g~~a~~LhGqm 334 (476)
T KOG0330|consen 268 KYQTVDHLKQTYLFVPGKDKDTYL----VYLLNELAGNSVIVFCNTCNTTRFLALLLRNL---------GFQAIPLHGQM 334 (476)
T ss_pred hhcchHHhhhheEeccccccchhH----HHHHHhhcCCcEEEEEeccchHHHHHHHHHhc---------Ccceecccchh
Confidence 32 2345555555554443333 23333455688999999999999999999998 99999999999
Q ss_pred CHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-
Q 014085 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (431)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~- 376 (431)
+++.|...++.|++|..+||||||+++||+|+|.|++||| || .|.+..+|+||+||+||+|
T Consensus 335 sq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yD----------iP~~skDYIHRvGRtaRaGr 396 (476)
T KOG0330|consen 335 SQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YD----------IPTHSKDYIHRVGRTARAGR 396 (476)
T ss_pred hHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cC----------CCCcHHHHHHHcccccccCC
Confidence 9999999999999999999999999999999999999999 88 7999999999999999999
Q ss_pred CcEEEEeeChhhhh
Q 014085 377 PGKCFRLYPENEFD 390 (431)
Q Consensus 377 ~G~~~~l~~~~~~~ 390 (431)
+|+++.|++..|.+
T Consensus 397 sG~~ItlVtqyDve 410 (476)
T KOG0330|consen 397 SGKAITLVTQYDVE 410 (476)
T ss_pred CcceEEEEehhhhH
Confidence 99999999876543
No 15
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-43 Score=353.59 Aligned_cols=312 Identities=21% Similarity=0.309 Sum_probs=239.8
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcE-EEEeCchhHHHHHHhHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKL-IGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~-v~v~~p~~~l~~~~~~~~~ 80 (431)
++.+...++..++++|+++++.++.|++++++|+|||||| +++|.+-........... ++++.|+++++.|+.+.+.
T Consensus 41 l~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~ 120 (513)
T COG0513 41 LQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELR 120 (513)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHH
Confidence 4455556778899999999999999999999999999999 555555543311111112 8999999999999999877
Q ss_pred HHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhccc--CCCCCcEEEEecCCcCccchHHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~lViDEah~~~~~~~~~~~~~~~~ 144 (431)
.+.....+..+....+ .+..+.++.++..++... .++++.++|+|||
T Consensus 121 ~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA----------------- 183 (513)
T COG0513 121 KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA----------------- 183 (513)
T ss_pred HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH-----------------
Confidence 7665431222222221 122233444444444433 4789999999999
Q ss_pred HHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHH-hhhCCCceEEecCc
Q 014085 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQGR 221 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~-~~~~~~~~~~~~~~ 221 (431)
|.|+|++|..+++.++..+. .+.|.+++|||++.. .++ .++.++..+.+...
T Consensus 184 ---------------------DrmLd~Gf~~~i~~I~~~~p----~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~ 238 (513)
T COG0513 184 ---------------------DRMLDMGFIDDIEKILKALP----PDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVE 238 (513)
T ss_pred ---------------------hhhhcCCCHHHHHHHHHhCC----cccEEEEEecCCCHHHHHHHHHHccCCcEEEEccc
Confidence 79999999888888777776 478999999999553 222 45666666666522
Q ss_pred -----eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC
Q 014085 222 -----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (431)
Q Consensus 222 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~ 296 (431)
...+...+......+ .....+...+......++||||+|+..|+.++..|... |+.+..+||+
T Consensus 239 ~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~---------g~~~~~lhG~ 306 (513)
T COG0513 239 KLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR---------GFKVAALHGD 306 (513)
T ss_pred cccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC---------CCeEEEecCC
Confidence 234445554444322 34555666666666678999999999999999999998 9999999999
Q ss_pred CCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 297 ~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
|++++|..+++.|++|+.+||||||+++||+|+|+|++||| || .|.+.+.|+||+||+||+|
T Consensus 307 l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD----------~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 307 LPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YD----------LPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------cc----------CCCCHHHheeccCccccCC
Confidence 99999999999999999999999999999999999999999 88 6899999999999999999
Q ss_pred -CcEEEEeeChh
Q 014085 377 -PGKCFRLYPEN 387 (431)
Q Consensus 377 -~G~~~~l~~~~ 387 (431)
.|.++.|++++
T Consensus 369 ~~G~ai~fv~~~ 380 (513)
T COG0513 369 RKGVAISFVTEE 380 (513)
T ss_pred CCCeEEEEeCcH
Confidence 99999999864
No 16
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=331.97 Aligned_cols=317 Identities=18% Similarity=0.297 Sum_probs=243.7
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccc--------ccCCcEEEEeCchhHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF--------CRDGKLIGVTQPRRVAA 72 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~--------~~~~~~v~v~~p~~~l~ 72 (431)
++++........++|+|..+++..+++++++.+|.|||||| +++|++++.... ...++.++++.|+++++
T Consensus 256 ~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLa 335 (673)
T KOG0333|consen 256 LLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELA 335 (673)
T ss_pred HHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHH
Confidence 45566666677899999999999999999999999999999 556666654332 23578999999999999
Q ss_pred HHHhHHHHHHhCC---ccCCeEeEeE----------eecCCCChhHhHHHHhccc--CCCCCcEEEEecCCcCccchHHH
Q 014085 73 VTVAKRVAEESGV---ELGQRVGYSI----------RFDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVL 137 (431)
Q Consensus 73 ~~~~~~~~~~~~~---~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--~~~~~~~lViDEah~~~~~~~~~ 137 (431)
+|+.+.-.++... .+...+|... .......++.++...+.+. .++++.++|+|||
T Consensus 336 qqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldea---------- 405 (673)
T KOG0333|consen 336 QQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEA---------- 405 (673)
T ss_pred HHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccch----------
Confidence 9998765444332 1111222111 1111233344444443332 2678999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCC---------------------ceEEE
Q 014085 138 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAP---------------------LKLII 196 (431)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~v~ 196 (431)
|.|+|++|.+++..++..|+.....+ .+.++
T Consensus 406 ----------------------------drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~m 457 (673)
T KOG0333|consen 406 ----------------------------DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVM 457 (673)
T ss_pred ----------------------------hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEE
Confidence 79999999999999999888644331 57899
Q ss_pred EcCCC--ChHHHH-hhhCCCceEEecCce---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHH
Q 014085 197 MSASL--DARGFS-EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 270 (431)
Q Consensus 197 lSAT~--~~~~l~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l 270 (431)
||||+ ..+.++ .||.++.++.+.... ..+++.+........ +..+..++......++|||+|+++.|+.+
T Consensus 458 ftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k----~kkL~eil~~~~~ppiIIFvN~kk~~d~l 533 (673)
T KOG0333|consen 458 FTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK----RKKLIEILESNFDPPIIIFVNTKKGADAL 533 (673)
T ss_pred EecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH----HHHHHHHHHhCCCCCEEEEEechhhHHHH
Confidence 99999 455566 788887777766332 223344433333333 33444444444567899999999999999
Q ss_pred HHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCC
Q 014085 271 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (431)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~ 350 (431)
|+.|++. ++.+..|||+-++++|+.++..|++|..+||||||++++|||||+|++||| ||
T Consensus 534 Ak~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------yd--- 593 (673)
T KOG0333|consen 534 AKILEKA---------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YD--- 593 (673)
T ss_pred HHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cc---
Confidence 9999998 999999999999999999999999999999999999999999999999999 87
Q ss_pred CceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 351 GMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 351 ~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
++.+.++|+||+||+||+| .|.++.|+++.+
T Consensus 594 -------maksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 594 -------MAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred -------hhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 6899999999999999999 999999999876
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.5e-43 Score=347.73 Aligned_cols=313 Identities=20% Similarity=0.237 Sum_probs=226.6
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
++.+...+...++|+|+++++.+..|++++++||||||||.++...+...... .....++++.|+++++.|+.+.+..+
T Consensus 16 ~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 95 (460)
T PRK11776 16 LANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRL 95 (460)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 34444556667999999999999999999999999999995544444433222 12346888899999999998877665
Q ss_pred hCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 83 SGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 83 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
.....+..+....+ .+....++.++..++.. ..+.+++++|+||||
T Consensus 96 ~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad------------------ 157 (460)
T PRK11776 96 ARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD------------------ 157 (460)
T ss_pred HhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH------------------
Confidence 43222222221111 01122334444444433 236789999999997
Q ss_pred hhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh--HHHH-hhhCCCceEEecCce-
Q 014085 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGRQ- 222 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~l~-~~~~~~~~~~~~~~~- 222 (431)
.|++.++...+...+..+. ...|++++|||++. +.+. .++.++..+.+....
T Consensus 158 --------------------~~l~~g~~~~l~~i~~~~~----~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~ 213 (460)
T PRK11776 158 --------------------RMLDMGFQDAIDAIIRQAP----ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHD 213 (460)
T ss_pred --------------------HHhCcCcHHHHHHHHHhCC----cccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCC
Confidence 5666666555544444443 67799999999943 4444 445555555554322
Q ss_pred -eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHH
Q 014085 223 -FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (431)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~ 301 (431)
..++..+......+ ....+........++++||||+|++.|+.+++.|.+. ++.+..+||+|++++
T Consensus 214 ~~~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------~~~v~~~hg~~~~~e 280 (460)
T PRK11776 214 LPAIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ---------GFSALALHGDLEQRD 280 (460)
T ss_pred CCCeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHH
Confidence 22344444333332 2333444444455678999999999999999999887 899999999999999
Q ss_pred HhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEE
Q 014085 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (431)
Q Consensus 302 r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~ 380 (431)
|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.| .|.|
T Consensus 281 R~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d----------~p~~~~~yiqR~GRtGR~g~~G~a 342 (460)
T PRK11776 281 RDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YE----------LARDPEVHVHRIGRTGRAGSKGLA 342 (460)
T ss_pred HHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE--------ec----------CCCCHhHhhhhcccccCCCCcceE
Confidence 999999999999999999999999999999999999 65 5889999999999999999 9999
Q ss_pred EEeeChhhh
Q 014085 381 FRLYPENEF 389 (431)
Q Consensus 381 ~~l~~~~~~ 389 (431)
+.|+++++.
T Consensus 343 i~l~~~~e~ 351 (460)
T PRK11776 343 LSLVAPEEM 351 (460)
T ss_pred EEEEchhHH
Confidence 999988754
No 18
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.4e-42 Score=348.58 Aligned_cols=314 Identities=19% Similarity=0.256 Sum_probs=220.9
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcc----cccCCcEEEEeCchhHHHHHHhH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG----FCRDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~----~~~~~~~v~v~~p~~~l~~~~~~ 77 (431)
++.+...++..++++|.++++.++.|++++++|||||||| +++|.+..... ....+..++++.|+++|+.|+.+
T Consensus 142 ~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~ 221 (545)
T PTZ00110 142 LKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIRE 221 (545)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHH
Confidence 4455556677899999999999999999999999999999 44555443221 11235679999999999999988
Q ss_pred HHHHHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHH
Q 014085 78 RVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (431)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~ 141 (431)
.+..+... ....+..... .+..+.++.++..++.. ..+.++++||+||||
T Consensus 222 ~~~~~~~~-~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd------------- 287 (545)
T PTZ00110 222 QCNKFGAS-SKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD------------- 287 (545)
T ss_pred HHHHHhcc-cCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-------------
Confidence 77665432 1111111111 11223344444444432 346789999999997
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCC--hHHHHh-hhCC-CceEE
Q 014085 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSE-YFGC-AKAVH 217 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~--~~~l~~-~~~~-~~~~~ 217 (431)
.|++.+|..++..++..+ .++.|++++|||++ .+.++. ++.. ...+.
T Consensus 288 -------------------------~mld~gf~~~i~~il~~~----~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~ 338 (545)
T PTZ00110 288 -------------------------RMLDMGFEPQIRKIVSQI----RPDRQTLMWSATWPKEVQSLARDLCKEEPVHVN 338 (545)
T ss_pred -------------------------hhhhcchHHHHHHHHHhC----CCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEE
Confidence 566666655554444443 26789999999993 344543 4433 22233
Q ss_pred ecCce----eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEc
Q 014085 218 VQGRQ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 293 (431)
Q Consensus 218 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~l 293 (431)
+.... ..+...+......+.... +..++..... ..+++||||+|++.|+.++..|... ++.+..+
T Consensus 339 vg~~~l~~~~~i~q~~~~~~~~~k~~~-L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~---------g~~~~~i 407 (545)
T PTZ00110 339 VGSLDLTACHNIKQEVFVVEEHEKRGK-LKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLD---------GWPALCI 407 (545)
T ss_pred ECCCccccCCCeeEEEEEEechhHHHH-HHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHc---------CCcEEEE
Confidence 32111 122222222222222222 2222222211 4678999999999999999999876 8889999
Q ss_pred CCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccC
Q 014085 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (431)
Q Consensus 294 hg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~g 373 (431)
||++++++|..+++.|++|+.+|||||+++++|+|+|+|++||+ || .|.+.++|+||+||+|
T Consensus 408 hg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d----------~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 408 HGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FD----------FPNQIEDYVHRIGRTG 469 (545)
T ss_pred ECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999 66 5899999999999999
Q ss_pred CCC-CcEEEEeeChhhh
Q 014085 374 REG-PGKCFRLYPENEF 389 (431)
Q Consensus 374 R~~-~G~~~~l~~~~~~ 389 (431)
|.| .|.|+.|+++++.
T Consensus 470 R~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 470 RAGAKGASYTFLTPDKY 486 (545)
T ss_pred cCCCCceEEEEECcchH
Confidence 999 9999999998754
No 19
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-42 Score=298.14 Aligned_cols=308 Identities=14% Similarity=0.260 Sum_probs=230.8
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc-ccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA-GFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~-~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
++-.+..+|+.+++.+.+|++++.+|.+|+|||..+..-++.. ........++++.|+++++.|+.+.+....+. .+.
T Consensus 46 GfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~-mnv 124 (400)
T KOG0328|consen 46 GFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDY-MNV 124 (400)
T ss_pred ccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhccc-ccc
Confidence 4446789999999999999999999999999993332222221 12222357999999999999998876544332 222
Q ss_pred eEeEeEee--------------cCCCChhHhHHHHhcccC--CCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 90 RVGYSIRF--------------DDRTSTSTRIKEALLDPY--LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 90 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
.+....+. .....++.++..++.... ...++++|+|||
T Consensus 125 q~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa-------------------------- 178 (400)
T KOG0328|consen 125 QCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA-------------------------- 178 (400)
T ss_pred eEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH--------------------------
Confidence 22111111 111233334433333322 357999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH---hhhCCCceEEecCceeee---eE
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAVHVQGRQFPV---EI 227 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~---~~~~~~~~~~~~~~~~~~---~~ 227 (431)
|-|++.+|..++-...+.++ +..|++++|||++.+.++ .|..++.-+.+.....++ ++
T Consensus 179 ------------DemL~kgfk~Qiydiyr~lp----~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKq 242 (400)
T KOG0328|consen 179 ------------DEMLNKGFKEQIYDIYRYLP----PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQ 242 (400)
T ss_pred ------------HHHHHhhHHHHHHHHHHhCC----CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhh
Confidence 67888888777776666665 789999999999777665 556666556666554443 44
Q ss_pred eeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhC
Q 014085 228 LYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFA 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~ 307 (431)
+|..... .+-.+.++.+.+....-.+.+|||||+..+++|.+.+++. ++.|..+||+|+++||..++.
T Consensus 243 f~v~ve~---EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~---------nftVssmHGDm~qkERd~im~ 310 (400)
T KOG0328|consen 243 FFVAVEK---EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMEQKERDKIMN 310 (400)
T ss_pred heeeech---hhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh---------CceeeeccCCcchhHHHHHHH
Confidence 4443333 3334555666665555678999999999999999999998 899999999999999999999
Q ss_pred cCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeCh
Q 014085 308 PAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPE 386 (431)
Q Consensus 308 ~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~ 386 (431)
.|+.|+.+|||+||+.+||+|+|.|++||| || .|...+.|+||+||.||.| .|.++.|+..
T Consensus 311 dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YD----------LP~nre~YIHRIGRSGRFGRkGvainFVk~ 372 (400)
T KOG0328|consen 311 DFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YD----------LPNNRELYIHRIGRSGRFGRKGVAINFVKS 372 (400)
T ss_pred HhhcCCceEEEEechhhccCCcceeEEEEe--------cC----------CCccHHHHhhhhccccccCCcceEEEEecH
Confidence 999999999999999999999999999999 77 4778888999999999999 9999999998
Q ss_pred hhhhc
Q 014085 387 NEFDK 391 (431)
Q Consensus 387 ~~~~~ 391 (431)
++...
T Consensus 373 ~d~~~ 377 (400)
T KOG0328|consen 373 DDLRI 377 (400)
T ss_pred HHHHH
Confidence 87654
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.6e-42 Score=338.59 Aligned_cols=315 Identities=17% Similarity=0.204 Sum_probs=219.8
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc--------cccCCcEEEEeCchhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--------FCRDGKLIGVTQPRRVAAVT 74 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~--------~~~~~~~v~v~~p~~~l~~~ 74 (431)
+++.+...+...++++|+++++.+..|++++++||||||||.++...+.... ....+..++++.|+++++.|
T Consensus 19 l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Q 98 (423)
T PRK04837 19 VVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQ 98 (423)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHH
Confidence 3455555667788999999999999999999999999999944333332211 11234679999999999999
Q ss_pred HhHHHHHHhCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHH
Q 014085 75 VAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLL 138 (431)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~ 138 (431)
+.+.+..+... .+..++...+. +..+.++.++..++.. ..+.+++++|+||||
T Consensus 99 i~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad---------- 167 (423)
T PRK04837 99 IHADAEPLAQA-TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD---------- 167 (423)
T ss_pred HHHHHHHHhcc-CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH----------
Confidence 98876554432 23333322211 1223344444444432 236789999999998
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHH-hhhCCCce
Q 014085 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKA 215 (431)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~-~~~~~~~~ 215 (431)
.+++.++...+...+..+... ...+.+++|||++.. .+. .++.++..
T Consensus 168 ----------------------------~l~~~~f~~~i~~i~~~~~~~--~~~~~~l~SAT~~~~~~~~~~~~~~~p~~ 217 (423)
T PRK04837 168 ----------------------------RMFDLGFIKDIRWLFRRMPPA--NQRLNMLFSATLSYRVRELAFEHMNNPEY 217 (423)
T ss_pred ----------------------------HHhhcccHHHHHHHHHhCCCc--cceeEEEEeccCCHHHHHHHHHHCCCCEE
Confidence 344444433333333333211 234578999999443 333 45565555
Q ss_pred EEecCcee---eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEE
Q 014085 216 VHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (431)
Q Consensus 216 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (431)
+.+..... .+...+..... ......+..........++||||+|++.|+.++..|.+. ++.+..
T Consensus 218 i~v~~~~~~~~~i~~~~~~~~~----~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~v~~ 284 (423)
T PRK04837 218 VEVEPEQKTGHRIKEELFYPSN----EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD---------GHRVGL 284 (423)
T ss_pred EEEcCCCcCCCceeEEEEeCCH----HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC---------CCcEEE
Confidence 55443221 12222211111 222333444444445678999999999999999999876 899999
Q ss_pred cCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhccc
Q 014085 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (431)
Q Consensus 293 lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~ 372 (431)
+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|+||+||+
T Consensus 285 lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d----------~P~s~~~yiqR~GR~ 346 (423)
T PRK04837 285 LTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YD----------LPDDCEDYVHRIGRT 346 (423)
T ss_pred ecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eC----------CCCchhheEeccccc
Confidence 999999999999999999999999999999999999999999999 77 588999999999999
Q ss_pred CCCC-CcEEEEeeChhhh
Q 014085 373 GREG-PGKCFRLYPENEF 389 (431)
Q Consensus 373 gR~~-~G~~~~l~~~~~~ 389 (431)
||.| .|.++.|+++++.
T Consensus 347 gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 347 GRAGASGHSISLACEEYA 364 (423)
T ss_pred cCCCCCeeEEEEeCHHHH
Confidence 9999 9999999998753
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-41 Score=338.31 Aligned_cols=313 Identities=18% Similarity=0.220 Sum_probs=219.1
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc-------cCCcEEEEeCchhHHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-------RDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~-------~~~~~v~v~~p~~~l~~~~ 75 (431)
+.+.+...+...++++|.++++.+..|++++++||||||||.++.+.+...... ....+++++.|+++|+.|+
T Consensus 12 l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi 91 (456)
T PRK10590 12 ILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQI 91 (456)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHH
Confidence 345556667778999999999999999999999999999994433333222111 1123689999999999999
Q ss_pred hHHHHHHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHH
Q 014085 76 AKRVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLG 139 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~ 139 (431)
.+.+..+.... +..+..... .+..+.++.++..++.. ..+++++++|+||||
T Consensus 92 ~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah----------- 159 (456)
T PRK10590 92 GENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD----------- 159 (456)
T ss_pred HHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-----------
Confidence 99887765432 111111110 11122334444333322 247889999999998
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh--HHHH-hhhCCCceE
Q 014085 140 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAV 216 (431)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~l~-~~~~~~~~~ 216 (431)
.+++.++...+...+..+ +...+.+++|||++. ..+. .++.+...+
T Consensus 160 ---------------------------~ll~~~~~~~i~~il~~l----~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i 208 (456)
T PRK10590 160 ---------------------------RMLDMGFIHDIRRVLAKL----PAKRQNLLFSATFSDDIKALAEKLLHNPLEI 208 (456)
T ss_pred ---------------------------HHhccccHHHHHHHHHhC----CccCeEEEEeCCCcHHHHHHHHHHcCCCeEE
Confidence 444544433333333333 256789999999943 4555 455555444
Q ss_pred EecCce---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEc
Q 014085 217 HVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI 293 (431)
Q Consensus 217 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~l 293 (431)
.+.... ..+...+..... . .....+..........++||||+|+.+|+.++..|.+. ++.+..+
T Consensus 209 ~~~~~~~~~~~i~~~~~~~~~-~---~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~---------g~~~~~l 275 (456)
T PRK10590 209 EVARRNTASEQVTQHVHFVDK-K---RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD---------GIRSAAI 275 (456)
T ss_pred EEecccccccceeEEEEEcCH-H---HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC---------CCCEEEE
Confidence 443222 112222221111 1 11222233333445678999999999999999999886 8899999
Q ss_pred CCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccC
Q 014085 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (431)
Q Consensus 294 hg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~g 373 (431)
||+|++++|..+++.|++|+++|||||+++++|+|+|+|++||+ || .|.+..+|+||+||||
T Consensus 276 hg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~----------~P~~~~~yvqR~GRaG 337 (456)
T PRK10590 276 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YE----------LPNVPEDYVHRIGRTG 337 (456)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eC----------CCCCHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999 66 5889999999999999
Q ss_pred CCC-CcEEEEeeChhhh
Q 014085 374 REG-PGKCFRLYPENEF 389 (431)
Q Consensus 374 R~~-~G~~~~l~~~~~~ 389 (431)
|.| .|.++.|++.++.
T Consensus 338 R~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 338 RAAATGEALSLVCVDEH 354 (456)
T ss_pred cCCCCeeEEEEecHHHH
Confidence 999 8999999987754
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.1e-41 Score=340.79 Aligned_cols=312 Identities=17% Similarity=0.213 Sum_probs=218.0
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcc------cccCCcEEEEeCchhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG------FCRDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~------~~~~~~~v~v~~p~~~l~~~~ 75 (431)
++.+...+...++|+|.++++.+..|++++++|||||||| +++|.+..... ....+..++++.|+++|+.|+
T Consensus 133 ~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 133 LLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 3445555667899999999999999999999999999999 44554432211 112456899999999999988
Q ss_pred hHHHHHHhCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHH
Q 014085 76 AKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLG 139 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~ 139 (431)
.+.+..+.. ..+..+...... +....++.++..++.. ..+.+++++|+||||
T Consensus 213 ~~~~~~l~~-~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad----------- 280 (518)
T PLN00206 213 EDQAKVLGK-GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD----------- 280 (518)
T ss_pred HHHHHHHhC-CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-----------
Confidence 776655432 222222111111 1122344444444433 347889999999997
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCC--hHHHHhhh-CCCceE
Q 014085 140 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSEYF-GCAKAV 216 (431)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~--~~~l~~~~-~~~~~~ 216 (431)
.|++.+|..++..++..+ ++.|++++|||++ .+.++.++ .+...+
T Consensus 281 ---------------------------~ml~~gf~~~i~~i~~~l-----~~~q~l~~SATl~~~v~~l~~~~~~~~~~i 328 (518)
T PLN00206 281 ---------------------------CMLERGFRDQVMQIFQAL-----SQPQVLLFSATVSPEVEKFASSLAKDIILI 328 (518)
T ss_pred ---------------------------HHhhcchHHHHHHHHHhC-----CCCcEEEEEeeCCHHHHHHHHHhCCCCEEE
Confidence 555655554444444333 4568999999993 44555544 344344
Q ss_pred EecCcee---eeeEeeecCCCcchHHHHHHHHHHHhhc--CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEE
Q 014085 217 HVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLD--EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (431)
Q Consensus 217 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (431)
.+..... .+..........+.... +.+.+.. ...+++||||+|+..|+.++..|... .++.+.
T Consensus 329 ~~~~~~~~~~~v~q~~~~~~~~~k~~~----l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~--------~g~~~~ 396 (518)
T PLN00206 329 SIGNPNRPNKAVKQLAIWVETKQKKQK----LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV--------TGLKAL 396 (518)
T ss_pred EeCCCCCCCcceeEEEEeccchhHHHH----HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc--------cCcceE
Confidence 4432221 12222222222222222 2222221 22467999999999999999998753 178899
Q ss_pred EcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcc
Q 014085 292 PIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGR 371 (431)
Q Consensus 292 ~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR 371 (431)
.+||++++++|..+++.|++|+.+|||||+++++|+|+|+|++||+ || .|.+..+|+||+||
T Consensus 397 ~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d----------~P~s~~~yihRiGR 458 (518)
T PLN00206 397 SIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FD----------MPNTIKEYIHQIGR 458 (518)
T ss_pred EeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eC----------CCCCHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999 66 58899999999999
Q ss_pred cCCCC-CcEEEEeeChhhh
Q 014085 372 AGREG-PGKCFRLYPENEF 389 (431)
Q Consensus 372 ~gR~~-~G~~~~l~~~~~~ 389 (431)
|||.| .|.++.|+++++.
T Consensus 459 aGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 459 ASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred cccCCCCeEEEEEEchhHH
Confidence 99999 8999999987754
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.9e-41 Score=335.00 Aligned_cols=316 Identities=17% Similarity=0.200 Sum_probs=222.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc----c-ccCCcEEEEeCchhHHHHHHhH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG----F-CRDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~----~-~~~~~~v~v~~p~~~l~~~~~~ 77 (431)
+++.++..++..++++|+++++.+..|++++++||||+|||.++...+.... . ...+.+++++.|+++++.|+.+
T Consensus 12 l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~ 91 (434)
T PRK11192 12 LLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVAD 91 (434)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHH
Confidence 4455666777789999999999999999999999999999954333332211 1 1224579999999999999988
Q ss_pred HHHHHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhccc--CCCCCcEEEEecCCcCccchHHHHHHH
Q 014085 78 RVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLL 141 (431)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~lViDEah~~~~~~~~~~~~~ 141 (431)
.+..+... .+..++...+ .+..+.++.++...+... .+.++++||+||||
T Consensus 92 ~~~~l~~~-~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah------------- 157 (434)
T PRK11192 92 QARELAKH-THLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD------------- 157 (434)
T ss_pred HHHHHHcc-CCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-------------
Confidence 77665432 2222221111 111223344444333332 25789999999997
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH---HHHhhhC-CCceEE
Q 014085 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFG-CAKAVH 217 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~---~l~~~~~-~~~~~~ 217 (431)
.|++.++...+......+. ...+++++|||++.. .+..++. +...+.
T Consensus 158 -------------------------~~l~~~~~~~~~~i~~~~~----~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~ 208 (434)
T PRK11192 158 -------------------------RMLDMGFAQDIETIAAETR----WRKQTLLFSATLEGDAVQDFAERLLNDPVEVE 208 (434)
T ss_pred -------------------------HHhCCCcHHHHHHHHHhCc----cccEEEEEEeecCHHHHHHHHHHHccCCEEEE
Confidence 4555555444433333332 456899999999544 3444443 333333
Q ss_pred ecCce---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcC
Q 014085 218 VQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (431)
Q Consensus 218 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh 294 (431)
..... ..+...+.... ..+.....+.........+++||||+|+++|+.++..|.+. ++.+..+|
T Consensus 209 ~~~~~~~~~~i~~~~~~~~---~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~---------~~~~~~l~ 276 (434)
T PRK11192 209 AEPSRRERKKIHQWYYRAD---DLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA---------GINCCYLE 276 (434)
T ss_pred ecCCcccccCceEEEEEeC---CHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC---------CCCEEEec
Confidence 33221 11222222211 12233334444444445788999999999999999999886 88999999
Q ss_pred CCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCC
Q 014085 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (431)
Q Consensus 295 g~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR 374 (431)
|+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+...|+||+||+||
T Consensus 277 g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d----------~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 277 GEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FD----------MPRSADTYLHRIGRTGR 338 (434)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------EC----------CCCCHHHHhhccccccc
Confidence 9999999999999999999999999999999999999999999 66 58899999999999999
Q ss_pred CC-CcEEEEeeChhhhhc
Q 014085 375 EG-PGKCFRLYPENEFDK 391 (431)
Q Consensus 375 ~~-~G~~~~l~~~~~~~~ 391 (431)
.| .|.++.+++.+++..
T Consensus 339 ~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLL 356 (434)
T ss_pred CCCCceEEEEecHHHHHH
Confidence 99 899999998776533
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-41 Score=342.49 Aligned_cols=314 Identities=18% Similarity=0.229 Sum_probs=221.5
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc--------ccCCcEEEEeCchhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--------CRDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--------~~~~~~v~v~~p~~~l~~~~ 75 (431)
++.+...+...++++|+++++.+++|+|++++||||||||.++.+++..... .....+++++.|+++|+.|+
T Consensus 21 ~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi 100 (572)
T PRK04537 21 LAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQI 100 (572)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHH
Confidence 4455556677899999999999999999999999999999444333332211 11235799999999999999
Q ss_pred hHHHHHHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHH
Q 014085 76 AKRVAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLL 138 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~ 138 (431)
.+.+..+... .+..++.... .+..+.+..++..++.. ..+..+++||+||||
T Consensus 101 ~~~~~~l~~~-~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh---------- 169 (572)
T PRK04537 101 HKDAVKFGAD-LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD---------- 169 (572)
T ss_pred HHHHHHHhcc-CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH----------
Confidence 9887665432 3333332211 11223344444444332 236678999999998
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH---hhhCCCce
Q 014085 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKA 215 (431)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~---~~~~~~~~ 215 (431)
.|++.+|...+..++..+... ...|++++|||++..... .++.+...
T Consensus 170 ----------------------------~lld~gf~~~i~~il~~lp~~--~~~q~ll~SATl~~~v~~l~~~~l~~p~~ 219 (572)
T PRK04537 170 ----------------------------RMFDLGFIKDIRFLLRRMPER--GTRQTLLFSATLSHRVLELAYEHMNEPEK 219 (572)
T ss_pred ----------------------------HHhhcchHHHHHHHHHhcccc--cCceEEEEeCCccHHHHHHHHHHhcCCcE
Confidence 344444444333333333321 256899999999544322 55555444
Q ss_pred EEecCcee---eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEE
Q 014085 216 VHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (431)
Q Consensus 216 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (431)
+.+..... .+...+..... ......+...+...+..++||||+|+..|+.+++.|.+. ++.+..
T Consensus 220 i~v~~~~~~~~~i~q~~~~~~~----~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~---------g~~v~~ 286 (572)
T PRK04537 220 LVVETETITAARVRQRIYFPAD----EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH---------GYRVGV 286 (572)
T ss_pred EEeccccccccceeEEEEecCH----HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc---------CCCEEE
Confidence 44432221 12222221111 222333444444556778999999999999999999887 889999
Q ss_pred cCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhccc
Q 014085 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (431)
Q Consensus 293 lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~ 372 (431)
+||+|++.+|..+++.|++|+++|||||+++++|+|+|+|++||+ || .|.+.++|+||+||+
T Consensus 287 lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd----------~P~s~~~yvqRiGRa 348 (572)
T PRK04537 287 LSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YD----------LPFDAEDYVHRIGRT 348 (572)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cC----------CCCCHHHHhhhhccc
Confidence 999999999999999999999999999999999999999999999 66 589999999999999
Q ss_pred CCCC-CcEEEEeeChhhh
Q 014085 373 GREG-PGKCFRLYPENEF 389 (431)
Q Consensus 373 gR~~-~G~~~~l~~~~~~ 389 (431)
||.| .|.|+.|+++.+.
T Consensus 349 GR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 349 ARLGEEGDAISFACERYA 366 (572)
T ss_pred ccCCCCceEEEEecHHHH
Confidence 9999 9999999987643
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.8e-41 Score=343.76 Aligned_cols=313 Identities=19% Similarity=0.223 Sum_probs=226.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.++.+...+...++++|+++++.++.|++++++||||||||.++.+.+..... ...+..++++.|+++++.|+.+.+..
T Consensus 17 ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~ 96 (629)
T PRK11634 17 ILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTD 96 (629)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 34555566677899999999999999999999999999999554444433222 12345789999999999999888777
Q ss_pred HhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 82 ESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
+.....+..+..... ....+.++.++...+.. ..+++++++|+||||
T Consensus 97 ~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd----------------- 159 (629)
T PRK11634 97 FSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD----------------- 159 (629)
T ss_pred HHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH-----------------
Confidence 655432332221111 11123344444443333 237889999999998
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh--HHHH-hhhCCCceEEecCce
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGRQ 222 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~l~-~~~~~~~~~~~~~~~ 222 (431)
.|+++++...+..++..+. ...+++++|||++. ..+. .|+.+...+.+....
T Consensus 160 ---------------------~ml~~gf~~di~~Il~~lp----~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~ 214 (629)
T PRK11634 160 ---------------------EMLRMGFIEDVETIMAQIP----EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV 214 (629)
T ss_pred ---------------------HHhhcccHHHHHHHHHhCC----CCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc
Confidence 4555555444444444443 56789999999943 3333 566666555554332
Q ss_pred ---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCH
Q 014085 223 ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (431)
Q Consensus 223 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~ 299 (431)
..+...+......+ ....+...+......++||||+|+..|+.++..|.+. ++.+..+||+|++
T Consensus 215 ~~~~~i~q~~~~v~~~~----k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~---------g~~~~~lhgd~~q 281 (629)
T PRK11634 215 TTRPDISQSYWTVWGMR----KNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN---------GYNSAALNGDMNQ 281 (629)
T ss_pred ccCCceEEEEEEechhh----HHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC---------CCCEEEeeCCCCH
Confidence 12223333222222 2223344444455678999999999999999999886 8999999999999
Q ss_pred HHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-Cc
Q 014085 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (431)
Q Consensus 300 ~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G 378 (431)
++|..+++.|++|+++|||||+++++|+|+|+|++||+ || .|.+.++|+||+|||||.| .|
T Consensus 282 ~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d----------~P~~~e~yvqRiGRtGRaGr~G 343 (629)
T PRK11634 282 ALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YD----------IPMDSESYVHRIGRTGRAGRAG 343 (629)
T ss_pred HHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhccccCCCCcc
Confidence 99999999999999999999999999999999999999 77 5889999999999999999 89
Q ss_pred EEEEeeChhh
Q 014085 379 KCFRLYPENE 388 (431)
Q Consensus 379 ~~~~l~~~~~ 388 (431)
.++.++++.+
T Consensus 344 ~ai~~v~~~e 353 (629)
T PRK11634 344 RALLFVENRE 353 (629)
T ss_pred eEEEEechHH
Confidence 9999998654
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.1e-40 Score=328.25 Aligned_cols=311 Identities=15% Similarity=0.235 Sum_probs=213.0
Q ss_pred HHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHHhCC
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~ 85 (431)
+...+...++++|.++++.+..|++++++||||||||.++...+..... ...+.+++++.|+++++.|+.+.+......
T Consensus 43 l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~ 122 (401)
T PTZ00424 43 IYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDY 122 (401)
T ss_pred HHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhh
Confidence 3334455789999999999999999999999999999554444333221 223557899999999999988776555432
Q ss_pred ccCCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhc
Q 014085 86 ELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (431)
Q Consensus 86 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~ 149 (431)
....++...+ .+....+..++...+.. ..+.+++++|+||||..
T Consensus 123 -~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~------------------- 182 (401)
T PTZ00424 123 -LKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEM------------------- 182 (401)
T ss_pred -cCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHH-------------------
Confidence 1111111110 01122333333333322 24788999999999932
Q ss_pred cccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHH--H-hhhCCCceEEecCce---e
Q 014085 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGF--S-EYFGCAKAVHVQGRQ---F 223 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l--~-~~~~~~~~~~~~~~~---~ 223 (431)
++.++... +..+..+..++.+++++|||++.+.. . .++.+...+.+.... .
T Consensus 183 -------------------~~~~~~~~----~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (401)
T PTZ00424 183 -------------------LSRGFKGQ----IYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLE 239 (401)
T ss_pred -------------------HhcchHHH----HHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccC
Confidence 22111111 11111222367899999999954332 2 444444433333221 1
Q ss_pred eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
.....+......++. ...+..........++||||+|+++|+.++..|.+. ++.+..+||++++++|.
T Consensus 240 ~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~---------~~~~~~~h~~~~~~~R~ 307 (401)
T PTZ00424 240 GIRQFYVAVEKEEWK---FDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER---------DFTVSCMHGDMDQKDRD 307 (401)
T ss_pred CceEEEEecChHHHH---HHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---------CCcEEEEeCCCCHHHHH
Confidence 222333322222222 223333444445678999999999999999999876 78899999999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~ 382 (431)
.+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.
T Consensus 308 ~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~----------~p~s~~~y~qr~GRagR~g~~G~~i~ 369 (401)
T PTZ00424 308 LIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YD----------LPASPENYIHRIGRSGRFGRKGVAIN 369 (401)
T ss_pred HHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------EC----------CCCCHHHEeecccccccCCCCceEEE
Confidence 9999999999999999999999999999999999 66 5889999999999999999 999999
Q ss_pred eeChhhhh
Q 014085 383 LYPENEFD 390 (431)
Q Consensus 383 l~~~~~~~ 390 (431)
++++++.+
T Consensus 370 l~~~~~~~ 377 (401)
T PTZ00424 370 FVTPDDIE 377 (401)
T ss_pred EEcHHHHH
Confidence 99887654
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-40 Score=330.44 Aligned_cols=314 Identities=18% Similarity=0.248 Sum_probs=215.3
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc--------cCCcEEEEeCchhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--------RDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~--------~~~~~v~v~~p~~~l~~~~ 75 (431)
.+.+...+...++++|.++++.+..|+++++++|||||||.++...+...... .+..+++++.|+++++.|+
T Consensus 99 ~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~ 178 (475)
T PRK01297 99 MHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQI 178 (475)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHH
Confidence 34455566667899999999999999999999999999994433333222111 1135789999999999999
Q ss_pred hHHHHHHhCCccCCeEeEeEee---------------cCCCChhHhHHHHhc--ccCCCCCcEEEEecCCcCccchHHHH
Q 014085 76 AKRVAEESGVELGQRVGYSIRF---------------DDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLL 138 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~ 138 (431)
.+.+..+... .+..+...... +..+.++.++..++. ...+.+++++|+||||.
T Consensus 179 ~~~~~~l~~~-~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~--------- 248 (475)
T PRK01297 179 AKDAAALTKY-TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR--------- 248 (475)
T ss_pred HHHHHHhhcc-CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHH---------
Confidence 8887665432 22222111110 111233334433332 23478899999999983
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCce
Q 014085 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKA 215 (431)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~~ 215 (431)
+++.++...+..++..+... .+.+++++|||+ +...+. .|+.+...
T Consensus 249 -----------------------------l~~~~~~~~l~~i~~~~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~ 297 (475)
T PRK01297 249 -----------------------------MLDMGFIPQVRQIIRQTPRK--EERQTLLFSATFTDDVMNLAKQWTTDPAI 297 (475)
T ss_pred -----------------------------HHhcccHHHHHHHHHhCCCC--CCceEEEEEeecCHHHHHHHHHhccCCEE
Confidence 22222222222222222111 345899999998 344444 45555544
Q ss_pred EEecCcee---eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEE
Q 014085 216 VHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (431)
Q Consensus 216 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (431)
+.+..... .+...+......+. ...+...+......++||||+++++|+.++..|.+. ++.+..
T Consensus 298 v~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~---------~~~~~~ 364 (475)
T PRK01297 298 VEIEPENVASDTVEQHVYAVAGSDK----YKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD---------GINAAQ 364 (475)
T ss_pred EEeccCcCCCCcccEEEEEecchhH----HHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEE
Confidence 44433221 12222222222222 222333344445678999999999999999999876 888999
Q ss_pred cCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhccc
Q 014085 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (431)
Q Consensus 293 lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~ 372 (431)
+||++++++|.++++.|++|+++|||||+++++|+|+|++++||+ || .|.|..+|+||+||+
T Consensus 365 ~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~----------~P~s~~~y~Qr~GRa 426 (475)
T PRK01297 365 LSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FT----------LPEDPDDYVHRIGRT 426 (475)
T ss_pred EECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eC----------CCCCHHHHHHhhCcc
Confidence 999999999999999999999999999999999999999999999 55 589999999999999
Q ss_pred CCCC-CcEEEEeeChhhh
Q 014085 373 GREG-PGKCFRLYPENEF 389 (431)
Q Consensus 373 gR~~-~G~~~~l~~~~~~ 389 (431)
||.| .|.++.|++++|.
T Consensus 427 GR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 427 GRAGASGVSISFAGEDDA 444 (475)
T ss_pred CCCCCCceEEEEecHHHH
Confidence 9999 8999999987754
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.1e-39 Score=335.04 Aligned_cols=320 Identities=17% Similarity=0.130 Sum_probs=213.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
+.+.++..+...++++|.++++.+.+|+|+++++|||||||.++.+.+........+.+++++.|+++|+.|+...+.++
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 34556666667899999999999999999999999999999444333333322233567999999999999999988776
Q ss_pred hCCccCCeEeEeEeecCCCC----------------hhHhHHH-Hhcc-----cCCCCCcEEEEecCCcCccc-hHHHHH
Q 014085 83 SGVELGQRVGYSIRFDDRTS----------------TSTRIKE-ALLD-----PYLSRYSAIIVDEAHERTVH-TDVLLG 139 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~-~~~~-----~~~~~~~~lViDEah~~~~~-~~~~~~ 139 (431)
.. .+..++. ..+..+ +++.+.. ++.. ..+++++++|+||+|...-. ...+..
T Consensus 105 ~~--~~i~v~~---~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~ 179 (742)
T TIGR03817 105 TL--RGVRPAT---YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVAL 179 (742)
T ss_pred cc--CCeEEEE---EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHH
Confidence 41 1222221 111111 1222221 1110 23678999999999953211 111222
Q ss_pred HHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEe
Q 014085 140 LLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHV 218 (431)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~ 218 (431)
+++++.. +....+.+.|++++|||+ ++..+.+++-+.+...+
T Consensus 180 il~rL~r-------------------------------------i~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i 222 (742)
T TIGR03817 180 VLRRLRR-------------------------------------LCARYGASPVFVLASATTADPAAAASRLIGAPVVAV 222 (742)
T ss_pred HHHHHHH-------------------------------------HHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEE
Confidence 2222211 111122567999999999 77777755544444444
Q ss_pred cCce--eeeeEeeecCCC-------------cchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc
Q 014085 219 QGRQ--FPVEILYTLYPE-------------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE 283 (431)
Q Consensus 219 ~~~~--~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~ 283 (431)
+... ..........+. ..........+..... ...++||||+|++.|+.++..+.+.+.....
T Consensus 223 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~ 300 (742)
T TIGR03817 223 TEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDP 300 (742)
T ss_pred CCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhcc
Confidence 4221 111111111111 0011122222333332 2578999999999999999999876443221
Q ss_pred CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHH
Q 014085 284 ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 363 (431)
Q Consensus 284 ~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~ 363 (431)
..+..+..|||++++++|+.+++.|++|++++|||||++++|||+|++++||+ || .|.+.+
T Consensus 301 -~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~----------~P~s~~ 361 (742)
T TIGR03817 301 -DLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AG----------FPGTRA 361 (742)
T ss_pred -ccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eC----------CCCCHH
Confidence 12457889999999999999999999999999999999999999999999999 55 488999
Q ss_pred HHHHhhcccCCCC-CcEEEEeeC
Q 014085 364 QALQRSGRAGREG-PGKCFRLYP 385 (431)
Q Consensus 364 ~~~qr~GR~gR~~-~G~~~~l~~ 385 (431)
+|+||+|||||.| .|.++.+.+
T Consensus 362 ~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 362 SLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred HHHHhccccCCCCCCcEEEEEeC
Confidence 9999999999999 899998886
No 29
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-39 Score=341.79 Aligned_cols=329 Identities=22% Similarity=0.232 Sum_probs=229.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHH-HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~-~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
+++.+...+...++|+|.++++. +..|+|++++||||||||.++...+..... .+.+++++.|+++++.|..+.+..
T Consensus 12 ~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~ 89 (737)
T PRK02362 12 VIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFER 89 (737)
T ss_pred HHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHH
Confidence 34455555667899999999988 789999999999999999776655554432 245688899999999999998876
Q ss_pred HhCCccCCeEeEeEe-----------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 82 ESGVELGQRVGYSIR-----------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
+... +..++...+ .+..+.+++++..++.. .++++++++|+||+|
T Consensus 90 ~~~~--g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H-------------------- 147 (737)
T PRK02362 90 FEEL--GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH-------------------- 147 (737)
T ss_pred hhcC--CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc--------------------
Confidence 5321 222222111 11123445555554442 457889999999998
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeE
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEI 227 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (431)
+++|.+++..++..+..+... .++.|++++|||+ |++++++|++... +....++.++..
T Consensus 148 ------------------~l~d~~rg~~le~il~rl~~~-~~~~qii~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~ 207 (737)
T PRK02362 148 ------------------LIDSANRGPTLEVTLAKLRRL-NPDLQVVALSATIGNADELADWLDAEL-VDSEWRPIDLRE 207 (737)
T ss_pred ------------------ccCCCcchHHHHHHHHHHHhc-CCCCcEEEEcccCCCHHHHHHHhCCCc-ccCCCCCCCCee
Confidence 666667777766666555432 2578999999999 8999999997432 111112222211
Q ss_pred eee--------c----CCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCC-------------
Q 014085 228 LYT--------L----YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP------------- 282 (431)
Q Consensus 228 ~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~------------- 282 (431)
... . ...... ......+.+.. ..++++||||+|+++|+.++..|.+......
T Consensus 208 ~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 284 (737)
T PRK02362 208 GVFYGGAIHFDDSQREVEVPSK-DDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAE 284 (737)
T ss_pred eEecCCeeccccccccCCCccc-hHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 110 0 000000 12222333322 2468899999999999999999976542100
Q ss_pred -------c-------CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecC
Q 014085 283 -------E-------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (431)
Q Consensus 283 -------~-------~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~ 348 (431)
. ......+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||+ .+..||+
T Consensus 285 ~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~----~~~~yd~ 360 (737)
T PRK02362 285 EIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIR----DYRRYDG 360 (737)
T ss_pred HHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEe----cceeecC
Confidence 0 001246889999999999999999999999999999999999999999999996 3455775
Q ss_pred CCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 349 VKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
..+ ..|.+..+|+||+|||||.| .|.|+.+....
T Consensus 361 ~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 361 GAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 432 15899999999999999998 49999998653
No 30
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=301.68 Aligned_cols=348 Identities=19% Similarity=0.233 Sum_probs=252.8
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccc---c-CCcEEEEeCchhHHHHHHh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFC---R-DGKLIGVTQPRRVAAVTVA 76 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~---~-~~~~v~v~~p~~~l~~~~~ 76 (431)
.+++++..++-..+|+|..+++.+..++++++.++|||||| +++|.+-...... . ..-.++++.|+++++.|+.
T Consensus 17 l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~ 96 (567)
T KOG0345|consen 17 LLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIR 96 (567)
T ss_pred HHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHH
Confidence 45566667777889999999999999999999999999999 5555554331111 1 1236888999999999998
Q ss_pred HHHHHHhCCccC----CeEeEeE-----------eecCCCChhHhHHHHhcc----cCCCCCcEEEEecCCcCccchHHH
Q 014085 77 KRVAEESGVELG----QRVGYSI-----------RFDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVL 137 (431)
Q Consensus 77 ~~~~~~~~~~~~----~~~~~~~-----------~~~~~~~~~~~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~ 137 (431)
+.+..+...... ..+|... .....+.++.++..++.+ ..+..+.++|+|||
T Consensus 97 ~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEA---------- 166 (567)
T KOG0345|consen 97 EVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEA---------- 166 (567)
T ss_pred HHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecch----------
Confidence 876665544222 2222110 001123445555555554 12448999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCc
Q 014085 138 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAK 214 (431)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~ 214 (431)
|.++|+||...+..++..++ ...+.=++|||. ..+++. ..+.|+.
T Consensus 167 ----------------------------DrLldmgFe~~~n~ILs~LP----KQRRTGLFSATq~~~v~dL~raGLRNpv 214 (567)
T KOG0345|consen 167 ----------------------------DRLLDMGFEASVNTILSFLP----KQRRTGLFSATQTQEVEDLARAGLRNPV 214 (567)
T ss_pred ----------------------------HhHhcccHHHHHHHHHHhcc----cccccccccchhhHHHHHHHHhhccCce
Confidence 79999999888888888887 456888999999 555555 4566766
Q ss_pred eEEecCce---ee--eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceE
Q 014085 215 AVHVQGRQ---FP--VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLV 289 (431)
Q Consensus 215 ~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~ 289 (431)
.+.+.... .| +..+|....... ....+++.+.+...+++|||.+|...++..+..+.... +...
T Consensus 215 ~V~V~~k~~~~tPS~L~~~Y~v~~a~e----K~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-------~~~~ 283 (567)
T KOG0345|consen 215 RVSVKEKSKSATPSSLALEYLVCEADE----KLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-------KKRE 283 (567)
T ss_pred eeeecccccccCchhhcceeeEecHHH----HHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-------CCCc
Confidence 55555332 23 555555444333 33445555555667899999999999999999988863 3778
Q ss_pred EEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhh
Q 014085 290 TVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRS 369 (431)
Q Consensus 290 v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~ 369 (431)
+..+||.|.+++|..+++.|++....||+|||+++||+|||+|++||+ || +|.+.+.|+||+
T Consensus 284 i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~D----------pP~~~~~FvHR~ 345 (567)
T KOG0345|consen 284 IFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FD----------PPKDPSSFVHRC 345 (567)
T ss_pred EEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe--------cC----------CCCChhHHHhhc
Confidence 999999999999999999999988999999999999999999999999 88 689999999999
Q ss_pred cccCCCC-CcEEEEeeChhh--hhc-CcCCCCCceeccCch---H-HHHHHHHcCCCCCc
Q 014085 370 GRAGREG-PGKCFRLYPENE--FDK-LEDSTKPEIKRCNLS---N-VILQLKALGVDDII 421 (431)
Q Consensus 370 GR~gR~~-~G~~~~l~~~~~--~~~-~~~~~~~~~~~~~l~---~-~~l~l~~~~~~~~~ 421 (431)
|||||.| .|.++.|+.+++ |-. +.....+++.+.+.+ . +.-.++++-+++.+
T Consensus 346 GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~~~~~~ir~~~~~DR~ 405 (567)
T KOG0345|consen 346 GRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASLSVYQDIRSIISKDRA 405 (567)
T ss_pred chhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccchhHHHHHHHHhcccHH
Confidence 9999999 999999987654 322 333334443333222 1 45567777666543
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-39 Score=322.79 Aligned_cols=299 Identities=18% Similarity=0.242 Sum_probs=202.1
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhc--cHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTT--QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~--~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
+...++|+|.++++.+.+|+++++++|||||||. ++|.+. . +..++|+.|+++++.++...+... +..
T Consensus 8 g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--~-----~~~~lVi~P~~~L~~dq~~~l~~~-gi~-- 77 (470)
T TIGR00614 8 GLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--S-----DGITLVISPLISLMEDQVLQLKAS-GIP-- 77 (470)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--c-----CCcEEEEecHHHHHHHHHHHHHHc-CCc--
Confidence 3446889999999999999999999999999994 444432 1 235778889999998887776532 221
Q ss_pred CeEeEeEeec------------------CCCChhHhHH---HHhccc-CCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 89 QRVGYSIRFD------------------DRTSTSTRIK---EALLDP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 89 ~~~~~~~~~~------------------~~~~~~~~~~---~~~~~~-~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
........ ....+++.+. .+...- ...+++++|+||||+...+...+...++.+..
T Consensus 78 --~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 78 --ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred --EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 11110000 0001111111 011111 35679999999999755443333332222211
Q ss_pred hhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHH---HHhhhCC-CceEEecCce
Q 014085 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGC-AKAVHVQGRQ 222 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~---l~~~~~~-~~~~~~~~~~ 222 (431)
.+ . ..++.+++++|||++... +.++++. .+.+......
T Consensus 156 l~-------------------------------------~-~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~ 197 (470)
T TIGR00614 156 LK-------------------------------------Q-KFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD 197 (470)
T ss_pred HH-------------------------------------H-HcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC
Confidence 11 0 115678999999996654 3455542 1222222211
Q ss_pred eeeeEeeecCCCc-chHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHH
Q 014085 223 FPVEILYTLYPEP-DYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (431)
Q Consensus 223 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~ 300 (431)
.+ ...+...... +.... +..... ..++..+||||+|+++|+.++..|.+. ++.+..+||+|+++
T Consensus 198 r~-nl~~~v~~~~~~~~~~----l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~---------g~~~~~~H~~l~~~ 263 (470)
T TIGR00614 198 RP-NLYYEVRRKTPKILED----LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL---------GIAAGAYHAGLEIS 263 (470)
T ss_pred CC-CcEEEEEeCCccHHHH----HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc---------CCCeeEeeCCCCHH
Confidence 11 1122111111 22222 333332 233456799999999999999999887 89999999999999
Q ss_pred HHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcE
Q 014085 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (431)
Q Consensus 301 ~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~ 379 (431)
+|..+++.|++|+++|||||+++++|+|+|+|++||+ || .|.+.++|+||+|||||.| +|.
T Consensus 264 eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~----------~P~s~~~y~Qr~GRaGR~G~~~~ 325 (470)
T TIGR00614 264 ARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YS----------LPKSMESYYQESGRAGRDGLPSE 325 (470)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE--------eC----------CCCCHHHHHhhhcCcCCCCCCce
Confidence 9999999999999999999999999999999999999 55 5889999999999999999 999
Q ss_pred EEEeeChhhhhc
Q 014085 380 CFRLYPENEFDK 391 (431)
Q Consensus 380 ~~~l~~~~~~~~ 391 (431)
|+.+|++.+...
T Consensus 326 ~~~~~~~~d~~~ 337 (470)
T TIGR00614 326 CHLFYAPADINR 337 (470)
T ss_pred EEEEechhHHHH
Confidence 999999887643
No 32
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.7e-39 Score=301.15 Aligned_cols=313 Identities=19% Similarity=0.270 Sum_probs=237.2
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcc---cccCCcEEEEeCchhHHHHHHhHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG---FCRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~---~~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
.++....++...+++|+..++.+++|+++++.|.||+||| +++|.+-.... ..+.+-.++++.|+++++.|.+..
T Consensus 94 ~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~e 173 (543)
T KOG0342|consen 94 LKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAE 173 (543)
T ss_pred HHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHH
Confidence 3455566677889999999999999999999999999999 55666554322 233466889999999999999888
Q ss_pred HHHHhCCccCCeEeEeEeecCCCCh--------------hHhHHHHhccc---CCCCCcEEEEecCCcCccchHHHHHHH
Q 014085 79 VAEESGVELGQRVGYSIRFDDRTST--------------STRIKEALLDP---YLSRYSAIIVDEAHERTVHTDVLLGLL 141 (431)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~---~~~~~~~lViDEah~~~~~~~~~~~~~ 141 (431)
..+......+..+++..++...... +.++..++.+. ...+.+++|+|||
T Consensus 174 ak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA-------------- 239 (543)
T KOG0342|consen 174 AKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA-------------- 239 (543)
T ss_pred HHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc--------------
Confidence 7777665545555555544433333 33333444331 2456789999999
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhh-hC-CCceEE
Q 014085 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEY-FG-CAKAVH 217 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~-~~-~~~~~~ 217 (431)
|+++|++|...+++++.-++ ...|.+++|||. .+++++.. +. ++..+.
T Consensus 240 ------------------------DrlLd~GF~~di~~Ii~~lp----k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~ 291 (543)
T KOG0342|consen 240 ------------------------DRLLDIGFEEDVEQIIKILP----KQRQTLLFSATQPSKVKDLARGALKRDPVFVN 291 (543)
T ss_pred ------------------------hhhhhcccHHHHHHHHHhcc----ccceeeEeeCCCcHHHHHHHHHhhcCCceEee
Confidence 79999999888887777777 677999999999 44455532 22 333444
Q ss_pred ecCce-----eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEE
Q 014085 218 VQGRQ-----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVP 292 (431)
Q Consensus 218 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (431)
+.+.. ..+++.|...+....+..+..-+... ....++||||+|...+.-++..|+.. +++|..
T Consensus 292 ~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~---~~~~KiiVF~sT~~~vk~~~~lL~~~---------dlpv~e 359 (543)
T KOG0342|consen 292 VDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKN---IKRYKIIVFFSTCMSVKFHAELLNYI---------DLPVLE 359 (543)
T ss_pred cCCCCCcchhhcccceEEeccccchHHHHHHHHHHh---cCCceEEEEechhhHHHHHHHHHhhc---------CCchhh
Confidence 44222 33455555555544433333222222 22378999999999999999999876 899999
Q ss_pred cCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhccc
Q 014085 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (431)
Q Consensus 293 lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~ 372 (431)
+||+.++..|..+...|++.+..||||||+++||+|+|+|++||+ || .|.++.+|+||+||+
T Consensus 360 iHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~----------~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 360 IHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YD----------PPSDPEQYIHRVGRT 421 (543)
T ss_pred hhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE--------eC----------CCCCHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999 66 599999999999999
Q ss_pred CCCC-CcEEEEeeChhh
Q 014085 373 GREG-PGKCFRLYPENE 388 (431)
Q Consensus 373 gR~~-~G~~~~l~~~~~ 388 (431)
||.| .|+++.++.+++
T Consensus 422 aR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 422 AREGKEGKALLLLAPWE 438 (543)
T ss_pred cccCCCceEEEEeChhH
Confidence 9988 999999988764
No 33
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-39 Score=305.51 Aligned_cols=314 Identities=17% Similarity=0.253 Sum_probs=243.3
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhh--ccc-ccCCcEEEEeCchhHHHHHHhHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFH--AGF-CRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~--~~~-~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
.+.+...++..++.+|+++++..+.|++++..|.|||||| +++|.+-.. ..+ ..+|.-++++.|+++++.|+++.
T Consensus 81 ~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFev 160 (758)
T KOG0343|consen 81 LKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEV 160 (758)
T ss_pred HHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHH
Confidence 4556677888999999999999999999999999999999 445554322 222 34577899999999999999988
Q ss_pred HHHHhCC---ccCCeEeEeE---------eecCCCChhHhHHHHhc-ccC--CCCCcEEEEecCCcCccchHHHHHHHHH
Q 014085 79 VAEESGV---ELGQRVGYSI---------RFDDRTSTSTRIKEALL-DPY--LSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (431)
Q Consensus 79 ~~~~~~~---~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~--~~~~~~lViDEah~~~~~~~~~~~~~~~ 143 (431)
+.+.... ..|..+|... +....+.++.++...+. ++. .+++.++|+|||
T Consensus 161 L~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA---------------- 224 (758)
T KOG0343|consen 161 LNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA---------------- 224 (758)
T ss_pred HHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH----------------
Confidence 7654432 2233333210 11112233334333332 233 468999999999
Q ss_pred HHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhh-hCCCceEEec-
Q 014085 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEY-FGCAKAVHVQ- 219 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~-~~~~~~~~~~- 219 (431)
|+|+|+||..++..+++.++ +..|.+++|||. ++.+++.+ +.++..+.+.
T Consensus 225 ----------------------DR~LDMGFk~tL~~Ii~~lP----~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe 278 (758)
T KOG0343|consen 225 ----------------------DRMLDMGFKKTLNAIIENLP----KKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHE 278 (758)
T ss_pred ----------------------HHHHHHhHHHHHHHHHHhCC----hhheeeeeecccchhHHHHHHhhcCCCcEEEEec
Confidence 79999999666666666665 788999999999 88888876 4555555544
Q ss_pred ----CceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCC
Q 014085 220 ----GRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 295 (431)
Q Consensus 220 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg 295 (431)
..+..++++|...+..+ .+..++..+......++|||+.|.+++.-++..+.+. .+|+++.++||
T Consensus 279 ~a~~atP~~L~Q~y~~v~l~~----Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-------rpg~~l~~L~G 347 (758)
T KOG0343|consen 279 NAVAATPSNLQQSYVIVPLED----KIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-------RPGIPLLALHG 347 (758)
T ss_pred cccccChhhhhheEEEEehhh----HHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-------CCCCceeeecc
Confidence 23345566666655544 4455566666666888999999999999999999886 34899999999
Q ss_pred CCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCC
Q 014085 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (431)
Q Consensus 296 ~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~ 375 (431)
+|++..|.+++..|-+.+--||+|||+++||+|+|+|++||+ || ||.+.++|+||+||++|.
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~D----------CPedv~tYIHRvGRtAR~ 409 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VD----------CPEDVDTYIHRVGRTARY 409 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ec----------CchhHHHHHHHhhhhhcc
Confidence 999999999999999999999999999999999999999999 88 899999999999999999
Q ss_pred C-CcEEEEeeChhh
Q 014085 376 G-PGKCFRLYPENE 388 (431)
Q Consensus 376 ~-~G~~~~l~~~~~ 388 (431)
+ .|.++.+.++.+
T Consensus 410 ~~~G~sll~L~psE 423 (758)
T KOG0343|consen 410 KERGESLLMLTPSE 423 (758)
T ss_pred cCCCceEEEEcchh
Confidence 9 999999998776
No 34
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=309.74 Aligned_cols=315 Identities=19% Similarity=0.269 Sum_probs=232.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc--ccc--CCcEEEEeCchhHHHHHHhH-
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG--FCR--DGKLIGVTQPRRVAAVTVAK- 77 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~--~~~--~~~~v~v~~p~~~l~~~~~~- 77 (431)
.++.....+...++|+|..+++..+-|++++.+|-||||||..+.+.++.+. +.+ ...+++|+.|+++++.|+..
T Consensus 192 lLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV 271 (691)
T KOG0338|consen 192 LLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSV 271 (691)
T ss_pred HHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHH
Confidence 5566666777789999999999999999999999999999944444443322 222 24589999999999987654
Q ss_pred --HHHHHhCCccCCeEeEe----------EeecCCCChhHhHHHHhcc-c--CCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 78 --RVAEESGVELGQRVGYS----------IRFDDRTSTSTRIKEALLD-P--YLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 78 --~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~--~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
+++.|....++..+|.. ..++..+.++.++...+.+ + .++++.++|+|||
T Consensus 272 ~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA--------------- 336 (691)
T KOG0338|consen 272 TKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA--------------- 336 (691)
T ss_pred HHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH---------------
Confidence 57777777777776633 1233334445554444433 2 3788999999999
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhhh-CCCceEEec
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GCAKAVHVQ 219 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~~-~~~~~~~~~ 219 (431)
|+|++.+|..+...++..++ .+.|.++||||+ ..+++..+- ..+.-+.++
T Consensus 337 -----------------------DRMLeegFademnEii~lcp----k~RQTmLFSATMteeVkdL~slSL~kPvrifvd 389 (691)
T KOG0338|consen 337 -----------------------DRMLEEGFADEMNEIIRLCP----KNRQTMLFSATMTEEVKDLASLSLNKPVRIFVD 389 (691)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHhcc----ccccceeehhhhHHHHHHHHHhhcCCCeEEEeC
Confidence 79999999777666666665 678999999999 666777653 344345554
Q ss_pred Cce---eeeeEeeec-CCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCC
Q 014085 220 GRQ---FPVEILYTL-YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 295 (431)
Q Consensus 220 ~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg 295 (431)
... ..+...|.. .+..+.....+ +...+...-..++|||+.|++.|+.+.-.|-=. |+.+.-+||
T Consensus 390 ~~~~~a~~LtQEFiRIR~~re~dRea~--l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl---------gl~agElHG 458 (691)
T KOG0338|consen 390 PNKDTAPKLTQEFIRIRPKREGDREAM--LASLITRTFQDRTIVFVRTKKQAHRLRILLGLL---------GLKAGELHG 458 (691)
T ss_pred CccccchhhhHHHheeccccccccHHH--HHHHHHHhcccceEEEEehHHHHHHHHHHHHHh---------hchhhhhcc
Confidence 332 112222221 12221111111 111111111557999999999999999887655 999999999
Q ss_pred CCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCC
Q 014085 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (431)
Q Consensus 296 ~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~ 375 (431)
++++.+|.+.++.|++++++||||||+++||+||++|.+||| |+ +|.+...|+||+||++|+
T Consensus 459 sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN--------y~----------mP~t~e~Y~HRVGRTARA 520 (691)
T KOG0338|consen 459 SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN--------YA----------MPKTIEHYLHRVGRTARA 520 (691)
T ss_pred cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe--------cc----------CchhHHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999999 77 799999999999999999
Q ss_pred C-CcEEEEeeChhh
Q 014085 376 G-PGKCFRLYPENE 388 (431)
Q Consensus 376 ~-~G~~~~l~~~~~ 388 (431)
| .|..+.|+.+.+
T Consensus 521 GRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 521 GRAGRSVTLVGESD 534 (691)
T ss_pred ccCcceEEEecccc
Confidence 9 999999997664
No 35
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-39 Score=302.49 Aligned_cols=324 Identities=24% Similarity=0.295 Sum_probs=245.9
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccc-----ccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~-----~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.-.++.+|+++++.+++|++++|.++|||||| |++|.+...... ..+|.-++|+.|+++++.|.++.+.+.
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred hccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 4445688999999999999999999999999999 888887655443 345788999999999999999998887
Q ss_pred hCCccCCeEeEeEeecCCCChhHhHH--------------HHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTRIK--------------EALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
....-...-|+..+++...+...+++ ..+.+ ..++++.++|+||+
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEa------------------ 296 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEA------------------ 296 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecch------------------
Confidence 77655555566666666555555554 22211 23678999999999
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCccccccccc---------CCCCCceEEEEcCCC--ChHHHHhh-hCCC
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---------RKFAPLKLIIMSASL--DARGFSEY-FGCA 213 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~v~lSAT~--~~~~l~~~-~~~~ 213 (431)
|.++|.||+..+..+++.+-. ..++..+-+++|||+ .+..+++. +.++
T Consensus 297 --------------------DrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp 356 (708)
T KOG0348|consen 297 --------------------DRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDP 356 (708)
T ss_pred --------------------hHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCc
Confidence 799999999988887776622 122236778999999 55666643 2333
Q ss_pred ceEEecC----------------------------ceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHH
Q 014085 214 KAVHVQG----------------------------RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQE 265 (431)
Q Consensus 214 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~ 265 (431)
..+..+. -+..+.+.|...|..-.+-.+...+.+.....+..++|||+.+.+
T Consensus 357 v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d 436 (708)
T KOG0348|consen 357 VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSD 436 (708)
T ss_pred eeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechh
Confidence 2222110 011123334444555556666667777777777779999999999
Q ss_pred HHHHHHHHHHHHHhc-------------CCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCc
Q 014085 266 EIESVERLVQERLLQ-------------LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (431)
Q Consensus 266 ~~~~l~~~l~~~~~~-------------~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v 332 (431)
.++--+..|...+.. ..+..-+..+.-+||+|++++|..+++.|+..+..||+|||+++||+|+|+|
T Consensus 437 ~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V 516 (708)
T KOG0348|consen 437 SVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV 516 (708)
T ss_pred HHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCc
Confidence 999888888765532 1122334578889999999999999999999999999999999999999999
Q ss_pred EEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhhh
Q 014085 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (431)
Q Consensus 333 ~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~~ 389 (431)
++||+ || +|.+.++|+||+||++|+| .|.++.|..+.+.
T Consensus 517 ~~vVQ--------Yd----------~P~s~adylHRvGRTARaG~kG~alLfL~P~Ea 556 (708)
T KOG0348|consen 517 GLVVQ--------YD----------PPFSTADYLHRVGRTARAGEKGEALLFLLPSEA 556 (708)
T ss_pred CeEEE--------eC----------CCCCHHHHHHHhhhhhhccCCCceEEEecccHH
Confidence 99999 88 6999999999999999999 8999988866543
No 36
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-39 Score=286.53 Aligned_cols=313 Identities=20% Similarity=0.309 Sum_probs=225.3
Q ss_pred HHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHHHHhCC
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~~~~~~ 85 (431)
+...+...++|+|+.+++.+++|++++-+|.||||||+.+.+.+.+.... ..+.-.+++.|+++++.|..+++. ..+.
T Consensus 22 l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~-alGk 100 (442)
T KOG0340|consen 22 LKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFI-ALGK 100 (442)
T ss_pred HHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHH-Hhcc
Confidence 33445567889999999999999999999999999997777777665543 236688999999999999999864 4455
Q ss_pred ccCCeEeEeEeecC--------------CCChhHhHHHHhcc------cCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 86 ELGQRVGYSIRFDD--------------RTSTSTRIKEALLD------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 86 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
..+..+....++.. ...+++++...+.. ..++++.++|+|||
T Consensus 101 ~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA------------------ 162 (442)
T KOG0340|consen 101 LLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA------------------ 162 (442)
T ss_pred cccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch------------------
Confidence 55555544332222 22233333322222 23778999999999
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCc----eEEec--
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAK----AVHVQ-- 219 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~----~~~~~-- 219 (431)
|.+++..|...++.+.+-+ +.+.|.++||||++ +.+.+.++.+. .+..+
T Consensus 163 --------------------DrvL~~~f~d~L~~i~e~l----P~~RQtLlfSATit-d~i~ql~~~~i~k~~a~~~e~~ 217 (442)
T KOG0340|consen 163 --------------------DRVLAGCFPDILEGIEECL----PKPRQTLLFSATIT-DTIKQLFGCPITKSIAFELEVI 217 (442)
T ss_pred --------------------hhhhccchhhHHhhhhccC----CCccceEEEEeehh-hHHHHhhcCCcccccceEEecc
Confidence 6888887755554444444 46679999999982 22223332211 11111
Q ss_pred -Ccee--eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC
Q 014085 220 -GRQF--PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (431)
Q Consensus 220 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~ 296 (431)
+... .+...|...+. +-.+...-.++....+.+.+.++||+|+..+|+.++..|... ++.+..+||.
T Consensus 218 ~~vstvetL~q~yI~~~~-~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l---------e~r~~~lHs~ 287 (442)
T KOG0340|consen 218 DGVSTVETLYQGYILVSI-DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL---------EVRVVSLHSQ 287 (442)
T ss_pred CCCCchhhhhhheeecch-hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh---------ceeeeehhhc
Confidence 1111 11111221111 111112222333344446788999999999999999999998 9999999999
Q ss_pred CCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 297 ~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
|++++|...+.+|+.+..+||||||+++||+|||.|++||| || .|.++.+|+||.||++|+|
T Consensus 288 m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~d----------iPr~P~~yiHRvGRtARAG 349 (442)
T KOG0340|consen 288 MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN--------HD----------IPRDPKDYIHRVGRTARAG 349 (442)
T ss_pred chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe--------cC----------CCCCHHHHHHhhcchhccc
Confidence 99999999999999999999999999999999999999999 77 6999999999999999999
Q ss_pred -CcEEEEeeChhhhhc
Q 014085 377 -PGKCFRLYPENEFDK 391 (431)
Q Consensus 377 -~G~~~~l~~~~~~~~ 391 (431)
.|.++.++++.|.+.
T Consensus 350 R~G~aiSivt~rDv~l 365 (442)
T KOG0340|consen 350 RKGMAISIVTQRDVEL 365 (442)
T ss_pred CCcceEEEechhhHHH
Confidence 899999998776544
No 37
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=293.98 Aligned_cols=312 Identities=19% Similarity=0.269 Sum_probs=232.6
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccc-----ccCCcEEEEeCchhHHHHHHhHHHH
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~-----~~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
...++-+++|+|.++|+.+++|.+++.+|.||+||| +++|-++..... ...+..++++.|+++++.++.-...
T Consensus 236 kK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ 315 (629)
T KOG0336|consen 236 KKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVK 315 (629)
T ss_pred HhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHh
Confidence 345566889999999999999999999999999999 556655533221 2345688999999999988876655
Q ss_pred HHhCCccCCeEeEeE------------eecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSI------------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
+..-.......-|.. ..+....++.++..+..+ ..+..+.++|+|||
T Consensus 316 kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEA------------------- 376 (629)
T KOG0336|consen 316 KYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEA------------------- 376 (629)
T ss_pred HhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecch-------------------
Confidence 444322211111111 011111222222222222 23678999999999
Q ss_pred hhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCceEEecCc--
Q 014085 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGR-- 221 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~~~~~~~~-- 221 (431)
|.|+|++|.+++..++-.+- ++.+.++.|||+ .++.++ .|+.++-.+.+..-
T Consensus 377 -------------------DrMLDMgFEpqIrkilldiR----PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL 433 (629)
T KOG0336|consen 377 -------------------DRMLDMGFEPQIRKILLDIR----PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDL 433 (629)
T ss_pred -------------------hhhhcccccHHHHHHhhhcC----CcceeeeecccCchHHHHHHHHhhhCceEEEecccce
Confidence 79999999999999998887 888999999999 566676 57766655554432
Q ss_pred --eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCH
Q 014085 222 --QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (431)
Q Consensus 222 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~ 299 (431)
...+++.+....+.+..+. +......+ ....++||||..+..|+.|...|.-. |+....+||+-.+
T Consensus 434 ~a~~sVkQ~i~v~~d~~k~~~-~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~---------gi~~q~lHG~r~Q 501 (629)
T KOG0336|consen 434 VAVKSVKQNIIVTTDSEKLEI-VQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLK---------GISSQSLHGNREQ 501 (629)
T ss_pred eeeeeeeeeEEecccHHHHHH-HHHHHHhc--CCCceEEEEEechhhhhhccchhhhc---------ccchhhccCChhh
Confidence 2345555544444444432 22222222 33567999999999999998877665 9999999999999
Q ss_pred HHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-Cc
Q 014085 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (431)
Q Consensus 300 ~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G 378 (431)
.+|+..++.|+.|+++||||||++++|+|+|+|++|+| || +|.+.++|+||+||+||+| .|
T Consensus 502 ~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yD----------FP~nIeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 502 SDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YD----------FPRNIEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred hhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cC----------CCccHHHHHHHhcccccCCCCc
Confidence 99999999999999999999999999999999999999 87 6999999999999999999 99
Q ss_pred EEEEeeChhhhhc
Q 014085 379 KCFRLYPENEFDK 391 (431)
Q Consensus 379 ~~~~l~~~~~~~~ 391 (431)
..+.+++.++.+.
T Consensus 564 ~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 564 TSISFLTRNDWSM 576 (629)
T ss_pred ceEEEEehhhHHH
Confidence 9999999887644
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.1e-38 Score=326.29 Aligned_cols=303 Identities=16% Similarity=0.199 Sum_probs=200.7
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCe
Q 014085 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (431)
-..+++|+++++.++.|+++++++|||+||| +++|.++. +..++|+.|+++|+.++...+... +......
T Consensus 459 ~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSLmqDQV~~L~~~-GI~Aa~L 530 (1195)
T PLN03137 459 HSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSLIQDQIMNLLQA-NIPAASL 530 (1195)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHHHHHHHHHHHhC-CCeEEEE
Confidence 3678999999999999999999999999999 44554432 235788888888886554444321 2111000
Q ss_pred EeEe----------------EeecCCCChhHhHH------HHhcc-cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 91 VGYS----------------IRFDDRTSTSTRIK------EALLD-PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 91 ~~~~----------------~~~~~~~~~~~~~~------~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
.+.. ........+++++. ..+.. .....+++|||||||+...|...+..-.+.+-..
T Consensus 531 ~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~L 610 (1195)
T PLN03137 531 SAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGIL 610 (1195)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHH
Confidence 0000 00001111122221 11111 1134589999999997555543332222221111
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH---HHHhhhCCCceEEecCceee
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFP 224 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~---~l~~~~~~~~~~~~~~~~~~ 224 (431)
+ ...++.+++++|||++.. ++.+.++....+.+......
T Consensus 611 r--------------------------------------~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~R 652 (1195)
T PLN03137 611 K--------------------------------------QKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNR 652 (1195)
T ss_pred H--------------------------------------HhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCc
Confidence 1 111567899999999554 34455543322222222222
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
....|...+.... ....+..... .......||||+|+++|+.++..|.+. |+.+..|||+|++++|.
T Consensus 653 pNL~y~Vv~k~kk---~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~ 720 (1195)
T PLN03137 653 PNLWYSVVPKTKK---CLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRA 720 (1195)
T ss_pred cceEEEEeccchh---HHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHH
Confidence 2333333333221 1122222222 223457999999999999999999887 99999999999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~ 382 (431)
.+++.|++|+++|||||++++||||+|+|++||| || .|.+.+.|+||+|||||.| +|.|+.
T Consensus 721 ~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------yd----------lPkSiEsYyQriGRAGRDG~~g~cIL 782 (1195)
T PLN03137 721 FVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HS----------LPKSIEGYHQECGRAGRDGQRSSCVL 782 (1195)
T ss_pred HHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cC----------CCCCHHHHHhhhcccCCCCCCceEEE
Confidence 9999999999999999999999999999999999 55 5999999999999999999 999999
Q ss_pred eeChhhhhc
Q 014085 383 LYPENEFDK 391 (431)
Q Consensus 383 l~~~~~~~~ 391 (431)
+|+..|+..
T Consensus 783 lys~~D~~~ 791 (1195)
T PLN03137 783 YYSYSDYIR 791 (1195)
T ss_pred EecHHHHHH
Confidence 999877644
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.1e-38 Score=322.06 Aligned_cols=302 Identities=19% Similarity=0.317 Sum_probs=205.5
Q ss_pred hHHHhhccC-ChHHHHHHHHHHHhCCCEEEEEcCCCCChhc--cHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 5 KILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTT--QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 5 ~~~~~~~~~-~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~--~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
++++....+ ..+++|+++++.+..|+++++++|||+|||. ++|.++. .+ .++++.|+++++.++...+..
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g-~tlVisPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DG-LTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CC-CEEEEecHHHHHHHHHHHHHH
Confidence 444544455 5789999999999999999999999999994 4444432 13 477788899998888776654
Q ss_pred HhCCccCCeEeEeEeecCCCChhH---------------------hHH--HHhcccCCCCCcEEEEecCCcCccchHHHH
Q 014085 82 ESGVELGQRVGYSIRFDDRTSTST---------------------RIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLL 138 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~--~~~~~~~~~~~~~lViDEah~~~~~~~~~~ 138 (431)
. +.. .... ........ ++. .++......+++++|+||||+...+...+.
T Consensus 88 ~-gi~----~~~~---~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 88 N-GVA----AACL---NSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred c-CCc----EEEE---cCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCccc
Confidence 2 221 1111 01111111 110 111111234689999999997555443222
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHH---HHhhhC-CCc
Q 014085 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFG-CAK 214 (431)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~---l~~~~~-~~~ 214 (431)
..++.+...+ .. .++.+++++|||++... +.+.++ ..+
T Consensus 160 ~~y~~L~~l~-------------------------------------~~-~p~~~~v~lTAT~~~~~~~di~~~l~l~~~ 201 (607)
T PRK11057 160 PEYAALGQLR-------------------------------------QR-FPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (607)
T ss_pred HHHHHHHHHH-------------------------------------Hh-CCCCcEEEEecCCChhHHHHHHHHhCCCCe
Confidence 2222221111 01 15678999999995543 334443 223
Q ss_pred eEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcC
Q 014085 215 AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIF 294 (431)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lh 294 (431)
.+.......+ ...+.......... .+........++++||||+|+++|+.++..|.+. ++.+..+|
T Consensus 202 ~~~~~~~~r~-nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~---------g~~v~~~H 267 (607)
T PRK11057 202 LIQISSFDRP-NIRYTLVEKFKPLD----QLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR---------GISAAAYH 267 (607)
T ss_pred EEEECCCCCC-cceeeeeeccchHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEec
Confidence 3333322111 11222111222222 2333334455678999999999999999999887 89999999
Q ss_pred CCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCC
Q 014085 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (431)
Q Consensus 295 g~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR 374 (431)
|+|++++|..+++.|++|+++|||||+++++|+|+|+|++||+ || .|.+.++|+||+|||||
T Consensus 268 a~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d----------~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 268 AGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAGR 329 (607)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eC----------CCCCHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999999999 66 58899999999999999
Q ss_pred CC-CcEEEEeeChhhhhc
Q 014085 375 EG-PGKCFRLYPENEFDK 391 (431)
Q Consensus 375 ~~-~G~~~~l~~~~~~~~ 391 (431)
.| +|.|+.+|++.+...
T Consensus 330 ~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 330 DGLPAEAMLFYDPADMAW 347 (607)
T ss_pred CCCCceEEEEeCHHHHHH
Confidence 99 899999999887543
No 40
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-39 Score=304.88 Aligned_cols=313 Identities=19% Similarity=0.218 Sum_probs=233.8
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccc-------cc--CCcEEEEeCchhHHHHHHhHH
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-------CR--DGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~-------~~--~~~~v~v~~p~~~l~~~~~~~ 78 (431)
.+...++|+|+..++.+..|++++.+|||||||| +++|.+-..... .. ....++++.|+++++.|++..
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 4455789999999999999999999999999999 555554432211 11 136899999999999999998
Q ss_pred HHHHhCCcc-CCeEeEeE------------eecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHH
Q 014085 79 VAEESGVEL-GQRVGYSI------------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (431)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 143 (431)
..++..... ...+.|.. +.+....+..++..++.. ..+++++++|+|||
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEA---------------- 235 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEA---------------- 235 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecch----------------
Confidence 877765432 11112111 111223344444444433 23778999999999
Q ss_pred HHHhhccccCCCCCCCCCCCCcccccc-CCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCC-CceEEe
Q 014085 144 VQNARSKSADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGC-AKAVHV 218 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~-~~~~~~ 218 (431)
|.|+| ++|++++..++......-....|.++||||. +...++ .++.+ ...+.+
T Consensus 236 ----------------------DrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV 293 (482)
T KOG0335|consen 236 ----------------------DRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAV 293 (482)
T ss_pred ----------------------HHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEE
Confidence 79999 9999999999988866555678999999999 333444 44443 433333
Q ss_pred ---cCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCC-----cEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEE
Q 014085 219 ---QGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPG-----DILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 290 (431)
Q Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v 290 (431)
.+....+........+.+....++..+-........+ +++|||.|++.|..++..|... ++++
T Consensus 294 ~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~ 364 (482)
T KOG0335|consen 294 GRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN---------GYPA 364 (482)
T ss_pred eeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC---------CCCc
Confidence 3334445555444444444444444333332111233 7999999999999999999887 9999
Q ss_pred EEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhc
Q 014085 291 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 370 (431)
Q Consensus 291 ~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~G 370 (431)
..+||..++.+|...++.|++|...+||||++++||+|+|+|++||+ || .|.+..+|+||+|
T Consensus 365 ~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yD----------mP~d~d~YvHRIG 426 (482)
T KOG0335|consen 365 KSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YD----------MPADIDDYVHRIG 426 (482)
T ss_pred eeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------ee----------cCcchhhHHHhcc
Confidence 99999999999999999999999999999999999999999999999 88 6899999999999
Q ss_pred ccCCCC-CcEEEEeeChh
Q 014085 371 RAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 371 R~gR~~-~G~~~~l~~~~ 387 (431)
|+||.| .|.++.|++..
T Consensus 427 RTGR~Gn~G~atsf~n~~ 444 (482)
T KOG0335|consen 427 RTGRVGNGGRATSFFNEK 444 (482)
T ss_pred ccccCCCCceeEEEeccc
Confidence 999999 89999999843
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.8e-37 Score=316.83 Aligned_cols=303 Identities=17% Similarity=0.240 Sum_probs=204.3
Q ss_pred HHHhhccC-ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 6 ILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 6 ~~~~~~~~-~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
+++...++ ..+++|++++..+..|+++++++|||+|||.+....+... .+ .++|+.|+..+..++...+... +
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~----~g-~~lVisPl~sL~~dq~~~l~~~-g 77 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL----KG-LTVVISPLISLMKDQVDQLRAA-G 77 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc----CC-cEEEEcCCHHHHHHHHHHHHHc-C
Confidence 34443444 5789999999999999999999999999994433332222 13 4667788888888877776542 3
Q ss_pred CccCCeEeEeEeecCCCChh---------------------HhHH--HHhcccCCCCCcEEEEecCCcCccchHHHHHHH
Q 014085 85 VELGQRVGYSIRFDDRTSTS---------------------TRIK--EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (431)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~---------------------~~~~--~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 141 (431)
.. +.+. .+..+.. +++. .+.......+++++|+||||+...+...+...+
T Consensus 78 i~----~~~~---~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 78 VA----AAYL---NSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred Cc----EEEE---eCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 22 2111 1111111 1110 111111245799999999997665543333322
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHH---HHhhhCCC-ceEE
Q 014085 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCA-KAVH 217 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~---l~~~~~~~-~~~~ 217 (431)
..+...+ ... ++.+++++|||++... +.++++.. +...
T Consensus 151 ~~l~~l~-------------------------------------~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~ 192 (591)
T TIGR01389 151 QRLGSLA-------------------------------------ERF-PQVPRIALTATADAETRQDIRELLRLADANEF 192 (591)
T ss_pred HHHHHHH-------------------------------------HhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE
Confidence 2222211 000 4556999999995554 44666522 2222
Q ss_pred ecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCC
Q 014085 218 VQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~ 297 (431)
...... ....+......+... .+.+........++||||+|+++|+.++..|... ++.+..+||+|
T Consensus 193 ~~~~~r-~nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~---------g~~~~~~H~~l 258 (591)
T TIGR01389 193 ITSFDR-PNLRFSVVKKNNKQK----FLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ---------GISALAYHAGL 258 (591)
T ss_pred ecCCCC-CCcEEEEEeCCCHHH----HHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC---------CCCEEEEECCC
Confidence 222111 122222222222222 2333333334678999999999999999999876 88999999999
Q ss_pred CHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-
Q 014085 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG- 376 (431)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~- 376 (431)
+.++|..+++.|.+|+++|||||+++++|+|+|+|++||+ || .|.+.++|+||+|||||.|
T Consensus 259 ~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~----------~p~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 259 SNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YD----------MPGNLESYYQEAGRAGRDGL 320 (591)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cC----------CCCCHHHHhhhhccccCCCC
Confidence 9999999999999999999999999999999999999999 55 5889999999999999999
Q ss_pred CcEEEEeeChhhhhc
Q 014085 377 PGKCFRLYPENEFDK 391 (431)
Q Consensus 377 ~G~~~~l~~~~~~~~ 391 (431)
+|.|+.+|++++...
T Consensus 321 ~~~~il~~~~~d~~~ 335 (591)
T TIGR01389 321 PAEAILLYSPADIAL 335 (591)
T ss_pred CceEEEecCHHHHHH
Confidence 899999999887543
No 42
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7.1e-38 Score=325.86 Aligned_cols=319 Identities=18% Similarity=0.209 Sum_probs=212.8
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCe
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (431)
..+.++++|++++..+.+|++++++||||||||.++...+...... +.+++++.|+++++.|..+.+.++.. .+..
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~~--~g~~ 94 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLRS--LGMR 94 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHhh--cCCe
Confidence 3567999999999999999999999999999997766666544322 34577778999999999888776432 2333
Q ss_pred EeEeEee-----------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCC
Q 014085 91 VGYSIRF-----------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (431)
Q Consensus 91 ~~~~~~~-----------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (431)
++...+. +....+.++...++.. ..+.+++++|+||+|
T Consensus 95 v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH----------------------------- 145 (674)
T PRK01172 95 VKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIH----------------------------- 145 (674)
T ss_pred EEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecch-----------------------------
Confidence 3332211 1112233333333322 236789999999998
Q ss_pred CCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeEeeecCC---
Q 014085 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYP--- 233 (431)
Q Consensus 158 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (431)
++.|.+++..++..+..+. ...++.|+|++|||+ +.+++++|++... +....+..|+........
T Consensus 146 ---------~l~d~~rg~~le~ll~~~~-~~~~~~riI~lSATl~n~~~la~wl~~~~-~~~~~r~vpl~~~i~~~~~~~ 214 (674)
T PRK01172 146 ---------IIGDEDRGPTLETVLSSAR-YVNPDARILALSATVSNANELAQWLNASL-IKSNFRPVPLKLGILYRKRLI 214 (674)
T ss_pred ---------hccCCCccHHHHHHHHHHH-hcCcCCcEEEEeCccCCHHHHHHHhCCCc-cCCCCCCCCeEEEEEecCeee
Confidence 3444444444444333222 112578999999999 9999999997542 333333334332211100
Q ss_pred ---CcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc----------------CCCceEEEEcC
Q 014085 234 ---EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE----------------ASRKLVTVPIF 294 (431)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~----------------~~~~~~v~~lh 294 (431)
...........+.... .+++++||||+|+++|+.++..|.+....... ......+..+|
T Consensus 215 ~~~~~~~~~~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~h 292 (674)
T PRK01172 215 LDGYERSQVDINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHH 292 (674)
T ss_pred ecccccccccHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEec
Confidence 0000000111111111 34678999999999999999999876432110 00123578899
Q ss_pred CCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCC
Q 014085 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (431)
Q Consensus 295 g~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR 374 (431)
|+|++++|..+++.|++|.++|||||+++++|+|+|+..+||. ..+.|+.. ...|.+..+|.||+|||||
T Consensus 293 agl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~----~~~~~~~~------~~~~~s~~~~~Qm~GRAGR 362 (674)
T PRK01172 293 AGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR----DITRYGNG------GIRYLSNMEIKQMIGRAGR 362 (674)
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc----CceEeCCC------CceeCCHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999877774 22334421 1247899999999999999
Q ss_pred CC---CcEEEEeeC
Q 014085 375 EG---PGKCFRLYP 385 (431)
Q Consensus 375 ~~---~G~~~~l~~ 385 (431)
.| .|.++.+..
T Consensus 363 ~g~d~~g~~~i~~~ 376 (674)
T PRK01172 363 PGYDQYGIGYIYAA 376 (674)
T ss_pred CCCCCcceEEEEec
Confidence 98 577777754
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-37 Score=321.74 Aligned_cols=327 Identities=16% Similarity=0.200 Sum_probs=223.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHH-HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~-~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.++.++..+...++++|.++++. +..|+++++++|||||||.++...+...... .+.+++++.|+++++.|..+.+..
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 12 IKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHH
Confidence 34555666667899999999986 7899999999999999997665555544332 245688889999999999988765
Q ss_pred HhCCccCCeEeEeEe-----------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 82 ESGVELGQRVGYSIR-----------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
+.. .+..++...+ .+....+++++..++.. .++++++++|+||+|
T Consensus 91 ~~~--~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H-------------------- 148 (720)
T PRK00254 91 WEK--LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH-------------------- 148 (720)
T ss_pred Hhh--cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC--------------------
Confidence 432 2333322211 11122344444444332 457889999999998
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeE
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEI 227 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (431)
++.+.+++..++..+..+. .+.|++++|||+ |++++++|++... +....++.+...
T Consensus 149 ------------------~l~~~~rg~~le~il~~l~----~~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~ 205 (720)
T PRK00254 149 ------------------LIGSYDRGATLEMILTHML----GRAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRK 205 (720)
T ss_pred ------------------ccCCccchHHHHHHHHhcC----cCCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCccee
Confidence 5666666666665555553 567999999999 9999999997542 222222223211
Q ss_pred --eeec-----CCC-cchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc----------------
Q 014085 228 --LYTL-----YPE-PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE---------------- 283 (431)
Q Consensus 228 --~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~---------------- 283 (431)
.+.. ... ..+.......+.+... .++++||||+|++.|+.++..|.+.+.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T PRK00254 206 GVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEE 283 (720)
T ss_pred eEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhc
Confidence 1110 000 0111222223333332 3678999999999999999888654321100
Q ss_pred --------CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceee
Q 014085 284 --------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESL 355 (431)
Q Consensus 284 --------~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~ 355 (431)
......+.++||+|++++|..+++.|++|.++|||||+++++|+|+|++++||. ....|+. .
T Consensus 284 ~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~----~~~~~~~------~ 353 (720)
T PRK00254 284 NPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIR----DTKRYSN------F 353 (720)
T ss_pred CCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEEC----CceEcCC------C
Confidence 001236899999999999999999999999999999999999999999999995 2334531 1
Q ss_pred eeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 356 LVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 356 ~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
...+.+..+|+||+|||||.| .|.++.+.+.+
T Consensus 354 ~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 354 GWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 113567789999999999976 69999998643
No 44
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=278.83 Aligned_cols=312 Identities=18% Similarity=0.232 Sum_probs=233.9
Q ss_pred hhccCChHHHHHHHHHHHhC--CCEEEEEcCCCCChhccHhHHhhhc-ccccCCcEEEEeCchhHHHHHHhHHHHHHhCC
Q 014085 9 QRKSLPIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA-GFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~--g~~~vi~apTGsGKT~~~~~~~~~~-~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~ 85 (431)
.-++-.+..+|+.+++.++. -++++.++.+|+|||.++.+-++.+ ......+.++++.|+++++.|+.+.+.+. |.
T Consensus 107 ~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eM-GK 185 (477)
T KOG0332|consen 107 AMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEM-GK 185 (477)
T ss_pred HhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHh-cC
Confidence 35556778899999999985 4789999999999996654444332 22223456777799999999999876554 43
Q ss_pred ccCCeEeEeEeecCC-----------CChhHhHHHHh---cccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccc
Q 014085 86 ELGQRVGYSIRFDDR-----------TSTSTRIKEAL---LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (431)
Q Consensus 86 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~ 151 (431)
..+....|.++.... ..++.....|+ ..-.+..+.++|+|||+
T Consensus 186 f~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD----------------------- 242 (477)
T KOG0332|consen 186 FTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD----------------------- 242 (477)
T ss_pred ceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-----------------------
Confidence 445556666543210 11111122222 22346789999999994
Q ss_pred cCCCCCCCCCCCCcccccc-CCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCceEEecCcee---e
Q 014085 152 ADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGRQF---P 224 (431)
Q Consensus 152 ~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~~~~~~~~~~---~ 224 (431)
.|++ .||+.+-..++..++ ++.|++++|||. ....++ ..+.++..+.+..+.. +
T Consensus 243 ---------------~Mi~tqG~~D~S~rI~~~lP----~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~ 303 (477)
T KOG0332|consen 243 ---------------VMIDTQGFQDQSIRIMRSLP----RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDN 303 (477)
T ss_pred ---------------hhhhcccccccchhhhhhcC----CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccc
Confidence 5555 667777777777775 688999999999 344444 5677887777776653 4
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~ 304 (431)
+..+|...+.. +.....+.+.+....-++.||||.|++.|.+++..+.+. |+.|..+||+|+.++|..
T Consensus 304 IkQlyv~C~~~---~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~---------Gh~V~~l~G~l~~~~R~~ 371 (477)
T KOG0332|consen 304 IKQLYVLCACR---DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE---------GHQVSLLHGDLTVEQRAA 371 (477)
T ss_pred hhhheeeccch---hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------CceeEEeeccchhHHHHH
Confidence 45555444433 334445555555556788999999999999999999998 999999999999999999
Q ss_pred hhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 305 i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
++..|++|..+|||+|++++||+|++.|++||| ||.+..-.+ ..+.++|+||+||+||.| .|.+|.+
T Consensus 372 ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN--------ydlP~~~~~----~pD~etYlHRiGRtGRFGkkG~a~n~ 439 (477)
T KOG0332|consen 372 IIDRFREGKEKVLITTNVCARGIDVAQVSVVVN--------YDLPVKYTG----EPDYETYLHRIGRTGRFGKKGLAINL 439 (477)
T ss_pred HHHHHhcCcceEEEEechhhcccccceEEEEEe--------cCCccccCC----CCCHHHHHHHhcccccccccceEEEe
Confidence 999999999999999999999999999999999 776655443 478999999999999999 9999999
Q ss_pred eChh
Q 014085 384 YPEN 387 (431)
Q Consensus 384 ~~~~ 387 (431)
+..+
T Consensus 440 v~~~ 443 (477)
T KOG0332|consen 440 VDDK 443 (477)
T ss_pred eccc
Confidence 8654
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.4e-36 Score=321.28 Aligned_cols=311 Identities=20% Similarity=0.209 Sum_probs=202.0
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-------ccCCcEEEEeCchhHHHHHHhHHHHHH--
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-------CRDGKLIGVTQPRRVAAVTVAKRVAEE-- 82 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-------~~~~~~v~v~~p~~~l~~~~~~~~~~~-- 82 (431)
.-.++++|+++++.+.+|++++++||||||||.++.+.+..... ...+..++++.|+++++.|+.+++...
T Consensus 30 ~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~ 109 (876)
T PRK13767 30 FGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLT 109 (876)
T ss_pred cCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999554443332211 123457899999999999887754321
Q ss_pred -----h---CCcc-CCeEeEeEee--------------cCCCChhHhHHHHhccc----CCCCCcEEEEecCCcCccchH
Q 014085 83 -----S---GVEL-GQRVGYSIRF--------------DDRTSTSTRIKEALLDP----YLSRYSAIIVDEAHERTVHTD 135 (431)
Q Consensus 83 -----~---~~~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~~~~~lViDEah~~~~~~~ 135 (431)
. +... +..++...+. +....+++.+..++..+ .+.+++++|+||+|.
T Consensus 110 ~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~------ 183 (876)
T PRK13767 110 EIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS------ 183 (876)
T ss_pred HHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh------
Confidence 1 2222 1222211100 11112233333333322 367899999999994
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCC-
Q 014085 136 VLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA- 213 (431)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~- 213 (431)
+++..++..+...+..+......+.+.+++|||+ +.+.+++|+...
T Consensus 184 --------------------------------l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~ 231 (876)
T PRK13767 184 --------------------------------LAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYE 231 (876)
T ss_pred --------------------------------hccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCcc
Confidence 2223333322222222222222567899999999 788899998642
Q ss_pred ------ceEEecCc---eeeeeEeeec-----CCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHh
Q 014085 214 ------KAVHVQGR---QFPVEILYTL-----YPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLL 279 (431)
Q Consensus 214 ------~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~ 279 (431)
+...+... .....+.... .............+.+... ..+++||||||++.|+.++..|.+...
T Consensus 232 ~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~ 309 (876)
T PRK13767 232 DDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFP 309 (876)
T ss_pred ccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhch
Confidence 11222211 1111111100 0011111222333333332 256899999999999999999987533
Q ss_pred cCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeee
Q 014085 280 QLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVP 359 (431)
Q Consensus 280 ~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p 359 (431)
.. ..+..+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ |+ .|
T Consensus 310 ~~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~----------~P 368 (876)
T PRK13767 310 EE---YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LG----------SP 368 (876)
T ss_pred hh---ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eC----------CC
Confidence 11 12467899999999999999999999999999999999999999999999999 55 58
Q ss_pred cCHHHHHHhhcccCCCC----CcEEEEe
Q 014085 360 ISKAQALQRSGRAGREG----PGKCFRL 383 (431)
Q Consensus 360 ~s~~~~~qr~GR~gR~~----~G~~~~l 383 (431)
.+..+|+||+||+||.+ .|.++..
T Consensus 369 ~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 369 KSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 89999999999999874 3555553
No 46
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=280.65 Aligned_cols=303 Identities=19% Similarity=0.235 Sum_probs=227.6
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
++-.+.|+|++.++.++.|++++..|.+|+||| +++|.+-..... ...-..+++.|+++++.|......+... ..+
T Consensus 104 G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-~~~IQ~~ilVPtrelALQtSqvc~~lsk-h~~ 181 (459)
T KOG0326|consen 104 GFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-KNVIQAIILVPTRELALQTSQVCKELSK-HLG 181 (459)
T ss_pred ccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-ccceeEEEEeecchhhHHHHHHHHHHhc-ccC
Confidence 334678999999999999999999999999999 677776554432 2344678888999998776554333322 222
Q ss_pred CeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcccc
Q 014085 89 QRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (431)
Q Consensus 89 ~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 152 (431)
..+....+. .....++.++..+... ..+++..++|+|||
T Consensus 182 i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA------------------------- 236 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA------------------------- 236 (459)
T ss_pred eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh-------------------------
Confidence 222211111 1123445555544433 34788999999999
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCceEEecCce--eeeeE
Q 014085 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGRQ--FPVEI 227 (431)
Q Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~~~~~~~~~--~~~~~ 227 (431)
|.+++..|.+.++..+..++ +..|++++|||. .+..+. +++.++-.++.-... ..+..
T Consensus 237 -------------DKlLs~~F~~~~e~li~~lP----~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQ 299 (459)
T KOG0326|consen 237 -------------DKLLSVDFQPIVEKLISFLP----KERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQ 299 (459)
T ss_pred -------------hhhhchhhhhHHHHHHHhCC----ccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhh
Confidence 78999999888888887777 677999999999 555554 566665444444333 34455
Q ss_pred eeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhC
Q 014085 228 LYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFA 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~ 307 (431)
+|.-..+...+.. +.+++..+ .-.+.||||||.+.++.+|..+.+. |+.+..+|+.|.+++|..++.
T Consensus 300 yYafV~e~qKvhC-LntLfskL---qINQsIIFCNS~~rVELLAkKITel---------GyscyyiHakM~Q~hRNrVFH 366 (459)
T KOG0326|consen 300 YYAFVEERQKVHC-LNTLFSKL---QINQSIIFCNSTNRVELLAKKITEL---------GYSCYYIHAKMAQEHRNRVFH 366 (459)
T ss_pred heeeechhhhhhh-HHHHHHHh---cccceEEEeccchHhHHHHHHHHhc---------cchhhHHHHHHHHhhhhhhhh
Confidence 5543333333222 23333332 2456999999999999999999998 999999999999999999999
Q ss_pred cCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeCh
Q 014085 308 PAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPE 386 (431)
Q Consensus 308 ~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~ 386 (431)
.|++|..+.|||||.+.||+|+++|++||| || .|.+.++|+||+||.||.| .|.++.+++-
T Consensus 367 dFr~G~crnLVctDL~TRGIDiqavNvVIN--------FD----------fpk~aEtYLHRIGRsGRFGhlGlAInLity 428 (459)
T KOG0326|consen 367 DFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FD----------FPKNAETYLHRIGRSGRFGHLGLAINLITY 428 (459)
T ss_pred hhhccccceeeehhhhhcccccceeeEEEe--------cC----------CCCCHHHHHHHccCCccCCCcceEEEEEeh
Confidence 999999999999999999999999999999 77 6999999999999999999 9999999986
Q ss_pred hh
Q 014085 387 NE 388 (431)
Q Consensus 387 ~~ 388 (431)
+|
T Consensus 429 ed 430 (459)
T KOG0326|consen 429 ED 430 (459)
T ss_pred hh
Confidence 64
No 47
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=304.07 Aligned_cols=328 Identities=21% Similarity=0.268 Sum_probs=227.1
Q ss_pred HHHhhccCChHHHHHHHHHHHh-CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHH--HH
Q 014085 6 ILQQRKSLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA--EE 82 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~-~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~--~~ 82 (431)
+.+....-++.+-|++++.... +|+|++|++|||||||.++.+.+...... .+.+++++.|.+.++.+.++.+. +.
T Consensus 23 i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-~~~k~vYivPlkALa~Ek~~~~~~~~~ 101 (766)
T COG1204 23 ILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-GGGKVVYIVPLKALAEEKYEEFSRLEE 101 (766)
T ss_pred HhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHhhhHHh
Confidence 3333333356666666665555 56999999999999996665555554432 24568888999999999999887 44
Q ss_pred hCCccCCeEeEeE-------eecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 83 SGVELGQRVGYSI-------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 83 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
++..++..+|-.. ..+..+.+.++...+..+ .++..++++|+||+|
T Consensus 102 ~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH------------------------- 156 (766)
T COG1204 102 LGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH------------------------- 156 (766)
T ss_pred cCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee-------------------------
Confidence 4444333333211 111234555666544443 346789999999998
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceE---EecC--ceeeeeE
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAV---HVQG--RQFPVEI 227 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~---~~~~--~~~~~~~ 227 (431)
++.|..||+.++.++.++.... ...|++++|||+ |..++++|++..... .... +..+...
T Consensus 157 -------------~l~d~~RG~~lE~iv~r~~~~~-~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~ 222 (766)
T COG1204 157 -------------LLGDRTRGPVLESIVARMRRLN-ELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVG 222 (766)
T ss_pred -------------ecCCcccCceehhHHHHHHhhC-cceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccce
Confidence 8888889999999999988765 448999999999 999999999855331 0000 1111111
Q ss_pred eeecCC--Cc----chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC----------------C---
Q 014085 228 LYTLYP--EP----DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL----------------P--- 282 (431)
Q Consensus 228 ~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~----------------~--- 282 (431)
.+.... .. .........+.... ..++++||||+|++.+...|..+.+..... .
T Consensus 223 ~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~ 300 (766)
T COG1204 223 AFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPE 300 (766)
T ss_pred EEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccccc
Confidence 111111 11 11122233333333 337899999999999999999998533210 0
Q ss_pred ---------cCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCce
Q 014085 283 ---------EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGME 353 (431)
Q Consensus 283 ---------~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~ 353 (431)
.+.-...+..||+||+.++|..++..|++|+++||+||+++++|+|.|+-++||- .+.+||+..+
T Consensus 301 ~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g-- 374 (766)
T COG1204 301 TPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGG-- 374 (766)
T ss_pred ccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCC--
Confidence 0111235788999999999999999999999999999999999999998888873 5667886332
Q ss_pred eeeeeecCHHHHHHhhcccCCCC---CcEEEEee
Q 014085 354 SLLVVPISKAQALQRSGRAGREG---PGKCFRLY 384 (431)
Q Consensus 354 ~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~ 384 (431)
..+++..+++|++|||||.| -|..+.+.
T Consensus 375 ---~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 375 ---IVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred ---eEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 25899999999999999999 46666665
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.1e-34 Score=303.94 Aligned_cols=300 Identities=20% Similarity=0.251 Sum_probs=204.0
Q ss_pred HHhhccCChHHHHHHHHHHHhCC------CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHH
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g------~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
......+.+++.|.++++.+..+ .+.+++||||||||.++...+..... .+.+++++.|++.++.|+.+.+.
T Consensus 444 ~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~--~g~qvlvLvPT~~LA~Q~~~~f~ 521 (926)
T TIGR00580 444 FEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--DGKQVAVLVPTTLLAQQHFETFK 521 (926)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH--hCCeEEEEeCcHHHHHHHHHHHH
Confidence 34456778999999999999975 68999999999999544333333221 24679999999999999999887
Q ss_pred HHhCCccCCeEeEeEeecCCCChhHhHH--------------HHhc-ccCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
+.+.. .+..++...+..........+. .++. ...+.+++++|+||+|....... ..
T Consensus 522 ~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv~~~---~~----- 592 (926)
T TIGR00580 522 ERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQK---EK----- 592 (926)
T ss_pred HHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccchhHH---HH-----
Confidence 76543 2233332211111000000000 1222 23467899999999995322111 11
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhh-C--CCceEEecC-c
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-G--CAKAVHVQG-R 221 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~-~--~~~~~~~~~-~ 221 (431)
+..+ ..+.++++||||+.++.+...+ + +...+.... .
T Consensus 593 -----------------------------------L~~~----~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~ 633 (926)
T TIGR00580 593 -----------------------------------LKEL----RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED 633 (926)
T ss_pred -----------------------------------HHhc----CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC
Confidence 1111 1567899999999887776432 3 222333221 1
Q ss_pred eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHH
Q 014085 222 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~ 301 (431)
..+++.++..... ......+.... ..+++++||||++++++.+++.|.+.. +++.+..+||+|++++
T Consensus 634 R~~V~t~v~~~~~----~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~e 700 (926)
T TIGR00580 634 RLPVRTFVMEYDP----ELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-------PEARIAIAHGQMTENE 700 (926)
T ss_pred ccceEEEEEecCH----HHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC-------CCCeEEEecCCCCHHH
Confidence 2344444432211 11111222222 236789999999999999999998753 3678999999999999
Q ss_pred HhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEE
Q 014085 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (431)
Q Consensus 302 r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~ 380 (431)
|..+++.|++|+.+|||||+++++|+|+|++++||. +|.. ..+..+|+||+||+||.| .|.|
T Consensus 701 Re~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~---------~~gls~l~Qr~GRvGR~g~~g~a 763 (926)
T TIGR00580 701 LEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERAD---------KFGLAQLYQLRGRVGRSKKKAYA 763 (926)
T ss_pred HHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhcCCCCCCCCeEE
Confidence 999999999999999999999999999999999997 5432 234567999999999999 9999
Q ss_pred EEeeCh
Q 014085 381 FRLYPE 386 (431)
Q Consensus 381 ~~l~~~ 386 (431)
|.++++
T Consensus 764 ill~~~ 769 (926)
T TIGR00580 764 YLLYPH 769 (926)
T ss_pred EEEECC
Confidence 999864
No 49
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-35 Score=287.25 Aligned_cols=297 Identities=18% Similarity=0.266 Sum_probs=205.1
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
..++-|++++..+.+|+++++..|||+||| |++|.++.. | ..+|+.|...|...+...+... +.. .
T Consensus 17 ~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~------G-~TLVVSPLiSLM~DQV~~l~~~-Gi~----A 84 (590)
T COG0514 17 SFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE------G-LTLVVSPLISLMKDQVDQLEAA-GIR----A 84 (590)
T ss_pred ccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC------C-CEEEECchHHHHHHHHHHHHHc-Cce----e
Confidence 356789999999999999999999999999 667776662 4 3566666666665555544321 211 1
Q ss_pred eEeEeecCCCChhHhHHHHhc--------------c------cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccc
Q 014085 92 GYSIRFDDRTSTSTRIKEALL--------------D------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (431)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~--------------~------~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~ 151 (431)
.+....-...........+.. . -.-..+.++|||||||.+.|.+.+..-.+++-..+.
T Consensus 85 ~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~-- 162 (590)
T COG0514 85 AYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA-- 162 (590)
T ss_pred ehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh--
Confidence 111100000111111110000 0 014569999999999988887666666665554331
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHh---hhCC-CceEEecCceeeeeE
Q 014085 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSE---YFGC-AKAVHVQGRQFPVEI 227 (431)
Q Consensus 152 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~---~~~~-~~~~~~~~~~~~~~~ 227 (431)
. .++++++.+|||.++....+ .++. ...+...+... .++
T Consensus 163 -----------------------------------~-~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR-pNi 205 (590)
T COG0514 163 -----------------------------------G-LPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR-PNL 205 (590)
T ss_pred -----------------------------------h-CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC-chh
Confidence 1 15778999999997766553 3332 22222222211 122
Q ss_pred eeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhC
Q 014085 228 LYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFA 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~ 307 (431)
.|...+..+...+.. .+.+ ......+..||||.|++.|+.++++|... |+.+..|||||+.++|..+.+
T Consensus 206 ~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~---------g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 206 ALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN---------GISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred hhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC---------CCceEEecCCCCHHHHHHHHH
Confidence 222222222222222 2222 23445667999999999999999999997 999999999999999999999
Q ss_pred cCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeCh
Q 014085 308 PAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPE 386 (431)
Q Consensus 308 ~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~ 386 (431)
.|.+++++|+|||.+++||||-|||+.||| || .|.|.+.|.|.+|||||.| +..|+.||++
T Consensus 275 ~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~----------lP~s~EsYyQE~GRAGRDG~~a~aill~~~ 336 (590)
T COG0514 275 AFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD----------LPGSIESYYQETGRAGRDGLPAEAILLYSP 336 (590)
T ss_pred HHhcCCCcEEEEeccccCccCCCCceEEEE--------ec----------CCCCHHHHHHHHhhccCCCCcceEEEeecc
Confidence 999999999999999999999999999999 76 5999999999999999999 9999999998
Q ss_pred hhhh
Q 014085 387 NEFD 390 (431)
Q Consensus 387 ~~~~ 390 (431)
+|..
T Consensus 337 ~D~~ 340 (590)
T COG0514 337 EDIR 340 (590)
T ss_pred ccHH
Confidence 8753
No 50
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=8.5e-34 Score=287.90 Aligned_cols=335 Identities=19% Similarity=0.216 Sum_probs=235.8
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhcc--HhHHhhhccc----ccCCcEEEEeCchhHHHHHHhHHHHHHhCC
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQ--LPQFLFHAGF----CRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~--~~~~~~~~~~----~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~ 85 (431)
+..+++.|.++++.+.+|+|++|+||||||||.. +|.+-..... ..++-.++++.|.+++...+..++.....
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~- 98 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLR- 98 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHH-
Confidence 7789999999999999999999999999999933 3333322222 23456899999999999988887654433
Q ss_pred ccCCeEeEeEeecCCCChhH-----------------hHHHHhcc----cCCCCCcEEEEecCCcCccchHHHHHHHHHH
Q 014085 86 ELGQRVGYSIRFDDRTSTST-----------------RIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~~~~ 144 (431)
..|..+.. ..+..+... .+..++.. ..+.++.++|+||+|
T Consensus 99 ~~G~~v~v---RhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiH---------------- 159 (814)
T COG1201 99 ELGIEVAV---RHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIH---------------- 159 (814)
T ss_pred HcCCccce---ecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhh----------------
Confidence 33333321 112222222 22233332 347899999999999
Q ss_pred HHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCC----ceEEec
Q 014085 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA----KAVHVQ 219 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~----~~~~~~ 219 (431)
-+.+.++|.++.-.++.+....+ +.|.|++|||. +++.+++|+... .++.+.
T Consensus 160 ----------------------el~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~ 216 (814)
T COG1201 160 ----------------------ALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVS 216 (814)
T ss_pred ----------------------hhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcc
Confidence 35566677777777777776665 88999999999 999999999644 344444
Q ss_pred Cce-eeeeEeeecCCC---cchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCC
Q 014085 220 GRQ-FPVEILYTLYPE---PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS 295 (431)
Q Consensus 220 ~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg 295 (431)
... ..+++....... ..........+.+.... ...+|||+||+..++.++..|.+.. +..+..+||
T Consensus 217 ~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHg 286 (814)
T COG1201 217 AAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHG 286 (814)
T ss_pred cCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhc--------CCceeeecc
Confidence 322 233333221111 11123334444554443 3479999999999999999999872 278999999
Q ss_pred CCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCC
Q 014085 296 SLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (431)
Q Consensus 296 ~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~ 375 (431)
.++.++|..++++|++|+.+++|||+.++-|+|+.+|+.||+ |. -|.+.+.++||+||+|+.
T Consensus 287 SlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~----------SP~sV~r~lQRiGRsgHr 348 (814)
T COG1201 287 SLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LG----------SPKSVNRFLQRIGRAGHR 348 (814)
T ss_pred cccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eC----------CcHHHHHHhHhccccccc
Confidence 999999999999999999999999999999999999999999 44 489999999999999975
Q ss_pred C--CcEEEEeeC-hhhhhc---------CcCCCCCceeccCchHHHHHHHHcCC
Q 014085 376 G--PGKCFRLYP-ENEFDK---------LEDSTKPEIKRCNLSNVILQLKALGV 417 (431)
Q Consensus 376 ~--~G~~~~l~~-~~~~~~---------~~~~~~~~~~~~~l~~~~l~l~~~~~ 417 (431)
- ..+.+.+.. .+|.-. -.....+++-+.+|+-+.-++-++-+
T Consensus 349 ~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~ 402 (814)
T COG1201 349 LGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMAL 402 (814)
T ss_pred cCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHh
Confidence 4 344444433 233211 12333556667777777766655544
No 51
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=284.12 Aligned_cols=318 Identities=21% Similarity=0.291 Sum_probs=221.2
Q ss_pred chhhHHHhhccCChHHHHHHHHHHHhCC-CEEEEEcCCCCChhccHhHHhhhc---------cc---ccCCc--EEEEeC
Q 014085 2 PRQKILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHA---------GF---CRDGK--LIGVTQ 66 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~~~~~~~~~---------~~---~~~~~--~v~v~~ 66 (431)
+++..++..++..++++|.-+++.+..| .+++..|.||||||..+...+... .. ..++. ..+|+.
T Consensus 191 ~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~t 270 (731)
T KOG0347|consen 191 EILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVT 270 (731)
T ss_pred HHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEec
Confidence 4678889999999999999999999999 689999999999995444443331 11 11222 488999
Q ss_pred chhHHHHHHhHHHH---HHhCCccCCeEeEe----------EeecCCCChhHhHHHHhcc-----cCCCCCcEEEEecCC
Q 014085 67 PRRVAAVTVAKRVA---EESGVELGQRVGYS----------IRFDDRTSTSTRIKEALLD-----PYLSRYSAIIVDEAH 128 (431)
Q Consensus 67 p~~~l~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~lViDEah 128 (431)
|+++++.|+..-+. ...++.+...+|.. ...+..+.++.++..++.. ..+.+++|+|+||+
T Consensus 271 PTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEa- 349 (731)
T KOG0347|consen 271 PTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEA- 349 (731)
T ss_pred ChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccH-
Confidence 99999988876543 33333333333311 1223334555666555443 23778999999999
Q ss_pred cCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccc-cCCCCCceEEEEcCCCChHHHH
Q 014085 129 ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ-GRKFAPLKLIIMSASLDARGFS 207 (431)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~lSAT~~~~~l~ 207 (431)
|+|++.|+...+..++..+. .+.+...|.+.+|||++.....
T Consensus 350 -------------------------------------DRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~ 392 (731)
T KOG0347|consen 350 -------------------------------------DRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ 392 (731)
T ss_pred -------------------------------------HHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcC
Confidence 56666666655555555555 3444667999999999322211
Q ss_pred hh---h-CCCc-------------eEEecCceeeeeEeeecCCCcchHHHHHHHHHHH-----------hhcCCCCcEEE
Q 014085 208 EY---F-GCAK-------------AVHVQGRQFPVEILYTLYPEPDYLDATLITIFQV-----------HLDEAPGDILV 259 (431)
Q Consensus 208 ~~---~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~lV 259 (431)
.. - +... .+.+.+.+ .+. -..+.......+....+++ +....+|++||
T Consensus 393 ~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp---kii-D~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlV 468 (731)
T KOG0347|consen 393 PLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP---KII-DLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLV 468 (731)
T ss_pred hhHHhhhccchhhhhhHHHHHHHHHhCccCCC---eeE-ecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEE
Confidence 00 0 0000 01111111 111 0111111122222222211 22344899999
Q ss_pred EcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCc
Q 014085 260 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 339 (431)
Q Consensus 260 F~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~ 339 (431)
|||+.+.+..|+-.|... ++....+|+.|.+++|...+++|++....||||||+++||+|||+|.+|||
T Consensus 469 F~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH-- 537 (731)
T KOG0347|consen 469 FCNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH-- 537 (731)
T ss_pred EechHHHHHHHHHHHhhc---------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--
Confidence 999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 340 ~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
|. .|.+.+-|+||.||++|++ .|..+.|+.+.+
T Consensus 538 ------Yq----------VPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 538 ------YQ----------VPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred ------ee----------cCCccceeEecccccccccCCCeEEEEeChHH
Confidence 65 5888888999999999999 999999998875
No 52
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-35 Score=282.13 Aligned_cols=316 Identities=19% Similarity=0.237 Sum_probs=216.8
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccc----cCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~----~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
...+-.++++|.++++.+..+++++.||||||||| +.+|.+....... ..+-+++|+.|+++++.|.+....++
T Consensus 153 ~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 153 ELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred hCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 34556788999999999999999999999999999 6677665544433 44678999999999999999988776
Q ss_pred hCC--ccCCeE--eEeE------------eecCCCChhHhHHHHhccc----CCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 83 SGV--ELGQRV--GYSI------------RFDDRTSTSTRIKEALLDP----YLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 83 ~~~--~~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~----~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
... .-.... .+.. ..+...+++-++...+..+ .+.++.++|+||++
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-------------- 298 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-------------- 298 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH--------------
Confidence 621 100000 0100 0011122223333333332 47789999999995
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccC-CCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhhh-CCCceEEe
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDR-GNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GCAKAVHV 218 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~~-~~~~~~~~ 218 (431)
++++. .|..+.-.++..+ .+++.++-+||||. ..+++++.. .+...+.+
T Consensus 299 ------------------------~lfe~~~f~~Qla~I~sac---~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~viv 351 (593)
T KOG0344|consen 299 ------------------------LLFEPEFFVEQLADIYSAC---QSPDIRVALFSATISVYVEEWAELIKSDLKRVIV 351 (593)
T ss_pred ------------------------hhhChhhHHHHHHHHHHHh---cCcchhhhhhhccccHHHHHHHHHhhccceeEEE
Confidence 33332 1111111112211 12778888999998 555555433 23333333
Q ss_pred cCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCC
Q 014085 219 QGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 298 (431)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~ 298 (431)
..+.......-+...-.......+..+.+.....-..++|||+.+.+.|..|...|... .++.+..+||..+
T Consensus 352 g~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~--------~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 352 GLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY--------DNINVDVIHGERS 423 (593)
T ss_pred ecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc--------cCcceeeEecccc
Confidence 33321111111110001111222334444444555778999999999999999998522 2889999999999
Q ss_pred HHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-C
Q 014085 299 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P 377 (431)
Q Consensus 299 ~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~ 377 (431)
+.+|.+.+++|+.|+++|||||++++||+|+-+|+.||| || .|.+..+|+||+||+||+| +
T Consensus 424 ~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD----------~p~s~~syihrIGRtgRag~~ 485 (593)
T KOG0344|consen 424 QKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRAGRS 485 (593)
T ss_pred hhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cC----------CCchhHHHHHHhhccCCCCCC
Confidence 999999999999999999999999999999999999999 88 6999999999999999999 9
Q ss_pred cEEEEeeChhhhhc
Q 014085 378 GKCFRLYPENEFDK 391 (431)
Q Consensus 378 G~~~~l~~~~~~~~ 391 (431)
|++|+||++++...
T Consensus 486 g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 486 GKAITFYTDQDMPR 499 (593)
T ss_pred cceEEEeccccchh
Confidence 99999999876654
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.2e-33 Score=292.35 Aligned_cols=295 Identities=19% Similarity=0.225 Sum_probs=199.5
Q ss_pred hhccCChHHHHHHHHHHHhCC------CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 9 QRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g------~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
...+|+++++|+++++.+..+ .+.+++||||||||.++...+.... ..+.+++++.|++.++.|+.+.+.++
T Consensus 256 ~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l 333 (681)
T PRK10917 256 ASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKL 333 (681)
T ss_pred HhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 456778999999999999987 4899999999999954443333322 13567899999999999999988776
Q ss_pred hCCccCCeEeEeEeecCCCChhHh---HH--------------HHhc-ccCCCCCcEEEEecCCcCccchHHHHHHHHHH
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTR---IK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~ 144 (431)
... .+..++...+ ......+ +. ..+. ...+.+++++|+||+|....... ..
T Consensus 334 ~~~-~~i~v~ll~G---~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr-------~~ 402 (681)
T PRK10917 334 LEP-LGIRVALLTG---SLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVEQR-------LA 402 (681)
T ss_pred Hhh-cCcEEEEEcC---CCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHHHH-------HH
Confidence 542 2333333221 1111110 11 1111 12367899999999995322110 00
Q ss_pred HHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH-hhhCCCceEEecCc--
Q 014085 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHVQGR-- 221 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~-~~~~~~~~~~~~~~-- 221 (431)
.... ..+.++++||||+.++.++ ..+++.....++..
T Consensus 403 l~~~----------------------------------------~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~ 442 (681)
T PRK10917 403 LREK----------------------------------------GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP 442 (681)
T ss_pred HHhc----------------------------------------CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC
Confidence 0000 1346799999999877766 34444333333321
Q ss_pred -eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHH--------HHHHHHHHHHHHHhcCCcCCCceEEEE
Q 014085 222 -QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQE--------EIESVERLVQERLLQLPEASRKLVTVP 292 (431)
Q Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~--------~~~~l~~~l~~~~~~~~~~~~~~~v~~ 292 (431)
..++...+... +..+..+..+.... ..+.+++|||++.+ .++++++.|.+.+ +++.+..
T Consensus 443 ~r~~i~~~~~~~---~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-------~~~~v~~ 510 (681)
T PRK10917 443 GRKPITTVVIPD---SRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-------PELRVGL 510 (681)
T ss_pred CCCCcEEEEeCc---ccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-------CCCcEEE
Confidence 12344433322 22233333333333 34678999999654 4566677776642 2478999
Q ss_pred cCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhccc
Q 014085 293 IFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (431)
Q Consensus 293 lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~ 372 (431)
+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ ||... ...+.+.||+||+
T Consensus 511 lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r---------~gls~lhQ~~GRv 573 (681)
T PRK10917 511 LHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRV 573 (681)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCC---------CCHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999998 66322 2456799999999
Q ss_pred CCCC-CcEEEEeeC
Q 014085 373 GREG-PGKCFRLYP 385 (431)
Q Consensus 373 gR~~-~G~~~~l~~ 385 (431)
||.| +|.|+.+++
T Consensus 574 GR~g~~g~~ill~~ 587 (681)
T PRK10917 574 GRGAAQSYCVLLYK 587 (681)
T ss_pred cCCCCceEEEEEEC
Confidence 9999 999999995
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.2e-33 Score=290.35 Aligned_cols=299 Identities=18% Similarity=0.198 Sum_probs=195.5
Q ss_pred hccCChHHHHHHHHHHHhCC------CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 10 RKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g------~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
..+|.+++.|+++++.+..+ .+.+++||||||||.++...+..... .+.+++++.|++.++.|+.+.+.++.
T Consensus 231 ~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 231 SLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHh
Confidence 45678999999999999876 26899999999999544333332221 25578999999999999999888766
Q ss_pred CCccCCeEeEeEeecCCCChhHhHH---------------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 84 GVELGQRVGYSIRFDDRTSTSTRIK---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
.. .+..++...+............ .+.....+.+++++|+||+|........ .+.. ..
T Consensus 309 ~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~---~l~~---~~ 381 (630)
T TIGR00643 309 AP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQRK---KLRE---KG 381 (630)
T ss_pred cc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHHH---HHHH---hc
Confidence 52 2333332221111000000111 1111234678999999999953322110 0000 00
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHh-hhCCCceEEecC---ceee
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSE-YFGCAKAVHVQG---RQFP 224 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~-~~~~~~~~~~~~---~~~~ 224 (431)
.. ....++++||||+.++.++. .+++.....+.. ...+
T Consensus 382 -------------------------------------~~-~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~ 423 (630)
T TIGR00643 382 -------------------------------------QG-GFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKP 423 (630)
T ss_pred -------------------------------------cc-CCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCc
Confidence 00 02457999999997776663 333332222221 1123
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCH--------HHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ--------EEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~--------~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~ 296 (431)
+...+... +..+..+..+.+.. ..+.+++|||++. ..++.+++.|.+.+ +++.+..+||+
T Consensus 424 i~~~~~~~---~~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-------~~~~v~~lHG~ 491 (630)
T TIGR00643 424 ITTVLIKH---DEKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-------PKYNVGLLHGR 491 (630)
T ss_pred eEEEEeCc---chHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhC-------CCCcEEEEeCC
Confidence 44333322 12233333333322 2367899999976 44566666666542 37889999999
Q ss_pred CCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 297 ~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ ||.. ....+.+.||+||+||.|
T Consensus 492 m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~---------r~gls~lhQ~~GRvGR~g 554 (630)
T TIGR00643 492 MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAE---------RFGLSQLHQLRGRVGRGD 554 (630)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCC---------cCCHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999998 6632 235677999999999999
Q ss_pred -CcEEEEee
Q 014085 377 -PGKCFRLY 384 (431)
Q Consensus 377 -~G~~~~l~ 384 (431)
+|.|+.++
T Consensus 555 ~~g~~il~~ 563 (630)
T TIGR00643 555 HQSYCLLVY 563 (630)
T ss_pred CCcEEEEEE
Confidence 99999998
No 55
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=270.29 Aligned_cols=307 Identities=19% Similarity=0.259 Sum_probs=226.4
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhh----cccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFH----AGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~----~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
-...++++|.++++..+.|++++-+|.|||||| +++|.+... ......+...+++.|+++++.|+.....++ +
T Consensus 242 Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf-~ 320 (731)
T KOG0339|consen 242 EYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKF-G 320 (731)
T ss_pred hcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHh-h
Confidence 345788999999999999999999999999999 455555422 122345788999999999999987765444 2
Q ss_pred CccCCeEeEeEe--------------ecCCCChhHhHHHHh--cccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 85 VELGQRVGYSIR--------------FDDRTSTSTRIKEAL--LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 85 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
...+..+-...+ .+..+.++.++..+. -...+.++.++|+||+
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa--------------------- 379 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA--------------------- 379 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEech---------------------
Confidence 222222211111 111123333333222 1235889999999999
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCceEEec---Cce
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQ---GRQ 222 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~~~~~~---~~~ 222 (431)
|.|+|++|.+++..+...+. ++.|.++||||. ..+.++ ++|+++.-+... ...
T Consensus 380 -----------------drmfdmGfe~qVrSI~~hir----pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean 438 (731)
T KOG0339|consen 380 -----------------DRMFDMGFEPQVRSIKQHIR----PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEAN 438 (731)
T ss_pred -----------------hhhhccccHHHHHHHHhhcC----CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccc
Confidence 79999999999888888877 888999999999 555565 677765432222 111
Q ss_pred eeeeEeeecCCCcchHHHHHHHHHHH-hhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHH
Q 014085 223 FPVEILYTLYPEPDYLDATLITIFQV-HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~ 301 (431)
..+.+.....+..+ ..+.-+... ......|++|||+.-+..+++++..|.-. ++.+..+||++.+.+
T Consensus 439 ~dITQ~V~V~~s~~---~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk---------~~~v~llhgdkdqa~ 506 (731)
T KOG0339|consen 439 EDITQTVSVCPSEE---KKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK---------GFNVSLLHGDKDQAE 506 (731)
T ss_pred cchhheeeeccCcH---HHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc---------cceeeeecCchhhHH
Confidence 22333322222221 122222222 22344689999999999999999999765 999999999999999
Q ss_pred HhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEE
Q 014085 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (431)
Q Consensus 302 r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~ 380 (431)
|.+++..|+.+...|||+||++++|+|||++..||+ || ...+.+.|.||+||+||+| .|.+
T Consensus 507 rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD----------~ardIdththrigrtgRag~kGva 568 (731)
T KOG0339|consen 507 RNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YD----------FARDIDTHTHRIGRTGRAGEKGVA 568 (731)
T ss_pred HHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------cc----------ccchhHHHHHHhhhccccccccee
Confidence 999999999999999999999999999999999999 77 5778899999999999999 9999
Q ss_pred EEeeChhhhh
Q 014085 381 FRLYPENEFD 390 (431)
Q Consensus 381 ~~l~~~~~~~ 390 (431)
|.++++.+.+
T Consensus 569 yTlvTeKDa~ 578 (731)
T KOG0339|consen 569 YTLVTEKDAE 578 (731)
T ss_pred eEEechhhHH
Confidence 9999987653
No 56
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-34 Score=267.21 Aligned_cols=344 Identities=17% Similarity=0.243 Sum_probs=226.2
Q ss_pred HHhhccCChHHHHHHHHHHHh---------CCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHH
Q 014085 7 LQQRKSLPIASVEKRLVEEVR---------KNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~---------~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~ 75 (431)
+...+.....|+|..+++.++ .++++++.|||||||| |.+|.+.....+.-+.-+++|+.|++.++.|+
T Consensus 152 l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV 231 (620)
T KOG0350|consen 152 LVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQV 231 (620)
T ss_pred HHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHH
Confidence 344556677899999988884 3578999999999999 77787776665544557899999999999999
Q ss_pred hHHHHHHhCCccCCeEeEeEee-------------------cCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCc-c
Q 014085 76 AKRVAEESGVELGQRVGYSIRF-------------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERT-V 132 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~-~ 132 (431)
++.+..+.. ..+..++..... +..+.++.++...+.. ..+.++.++|||||+..- .
T Consensus 232 ~~~f~~~~~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 232 YDTFKRLNS-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred HHHHHHhcc-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 998766544 334444432211 2233445555554442 237899999999997311 1
Q ss_pred chHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCC--CcccccccccCCCCCceEEEEcCCC--ChHHHHh
Q 014085 133 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTN--GINTLKQCQGRKFAPLKLIIMSASL--DARGFSE 208 (431)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~ 208 (431)
...-.+..+..++.-- -.-...|.++..-+..+ ....+.....+.+++...+++|||+ ++..+.+
T Consensus 311 sfQ~Wl~~v~~~~~~~-----------k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~ 379 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCKTM-----------KRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKD 379 (620)
T ss_pred HHHHHHHHHHHHhCCc-----------hhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhh
Confidence 1111112222221100 00011133444433222 1111222223344666788999999 8888887
Q ss_pred hhC-CCceEEecCc---eeee--eEeee-cCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC
Q 014085 209 YFG-CAKAVHVQGR---QFPV--EILYT-LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL 281 (431)
Q Consensus 209 ~~~-~~~~~~~~~~---~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~ 281 (431)
+-- .+..+.+... .+.+ ..... ...+..+. -..++......+..++|+|+++.+.+..++..|+-.+..
T Consensus 380 l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~k---pl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~- 455 (620)
T KOG0350|consen 380 LTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFK---PLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS- 455 (620)
T ss_pred hhcCCCceEEeecccceeeecChhhhhceeecccccc---hHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc-
Confidence 643 3334444421 1111 11000 00111111 123344444455778999999999999999999843332
Q ss_pred CcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecC
Q 014085 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (431)
Q Consensus 282 ~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s 361 (431)
.+..+..|.|+++.+.|...++.|..|.++||||||+++||+|+.+|++||| || +|.+
T Consensus 456 ----~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd----------~P~~ 513 (620)
T KOG0350|consen 456 ----DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD----------PPAS 513 (620)
T ss_pred ----ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC----------CCch
Confidence 2566777999999999999999999999999999999999999999999999 88 6999
Q ss_pred HHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 362 KAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 362 ~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
..+|+||+||+||+| .|.||.+.+..+
T Consensus 514 ~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 514 DKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred hhHHHHhhcccccccCCceEEEeecccc
Confidence 999999999999999 999999997653
No 57
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=265.46 Aligned_cols=315 Identities=17% Similarity=0.220 Sum_probs=230.2
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccc-----ccCCcEEEEeCchhHHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF-----CRDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~-----~~~~~~v~v~~p~~~l~~~~ 75 (431)
.+++....++-.++-+|+.+++.+++|++++..|-|||||| |++|++...... ...+..++++.|++++++|+
T Consensus 30 llkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQv 109 (569)
T KOG0346|consen 30 LLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQV 109 (569)
T ss_pred HHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHH
Confidence 44555666777889999999999999999999999999999 777776543221 23466889999999999999
Q ss_pred hHHHHHHhCCcc-----CCeE-e---------EeEeecCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHH
Q 014085 76 AKRVAEESGVEL-----GQRV-G---------YSIRFDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVL 137 (431)
Q Consensus 76 ~~~~~~~~~~~~-----~~~~-~---------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~ 137 (431)
+..+.+....+- .... . .....+..+.++.++..++.. .....++++|+|||
T Consensus 110 y~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEA---------- 179 (569)
T KOG0346|consen 110 YKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEA---------- 179 (569)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechh----------
Confidence 887655443221 0000 0 111223334455555544433 23678999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhhh-CCCc
Q 014085 138 LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYF-GCAK 214 (431)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~~-~~~~ 214 (431)
|+++..|+........+.+ ++..|.++||||+ |...+.+.+ .++.
T Consensus 180 ----------------------------DLllsfGYeedlk~l~~~L----Pr~~Q~~LmSATl~dDv~~LKkL~l~nPv 227 (569)
T KOG0346|consen 180 ----------------------------DLLLSFGYEEDLKKLRSHL----PRIYQCFLMSATLSDDVQALKKLFLHNPV 227 (569)
T ss_pred ----------------------------hhhhhcccHHHHHHHHHhC----CchhhheeehhhhhhHHHHHHHHhccCCe
Confidence 6888888755554444444 4788999999999 667777654 5555
Q ss_pred eEEecCceee----eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEE
Q 014085 215 AVHVQGRQFP----VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 290 (431)
Q Consensus 215 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v 290 (431)
++.+.....+ +.+++....+.|.+.... .++... .-.|++|||+||.+.|..+.-.|+.. |+..
T Consensus 228 iLkl~e~el~~~dqL~Qy~v~cse~DKfllly-allKL~--LI~gKsliFVNtIdr~YrLkLfLeqF---------Giks 295 (569)
T KOG0346|consen 228 ILKLTEGELPNPDQLTQYQVKCSEEDKFLLLY-ALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQF---------GIKS 295 (569)
T ss_pred EEEeccccCCCcccceEEEEEeccchhHHHHH-HHHHHH--HhcCceEEEEechhhhHHHHHHHHHh---------CcHh
Confidence 5565544332 334443333333222211 122221 22788999999999999999999988 9999
Q ss_pred EEcCCCCCHHHHhhhhCcCCCCCcEEEEecC-----------------------------------ccccccccCCcEEE
Q 014085 291 VPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----------------------------------IAETSVTIPGIKYV 335 (431)
Q Consensus 291 ~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~-----------------------------------~~~~Gvdip~v~~V 335 (431)
..++|.|+...|..|+++|..|..+++|||| -.+||+|+..|.+|
T Consensus 296 ciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~V 375 (569)
T KOG0346|consen 296 CILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNV 375 (569)
T ss_pred hhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeee
Confidence 9999999999999999999999999999999 13589999999999
Q ss_pred EeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhhh
Q 014085 336 IDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (431)
Q Consensus 336 I~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~~ 389 (431)
|| || +|.+...|+||+||++|++ +|.+..|+.+.+.
T Consensus 376 lN--------FD----------~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~ 412 (569)
T KOG0346|consen 376 LN--------FD----------FPETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412 (569)
T ss_pred ee--------cC----------CCCchHHHHHhccccccCCCCCceEEEecchHH
Confidence 99 87 6999999999999999999 9999999876643
No 58
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=280.01 Aligned_cols=321 Identities=18% Similarity=0.209 Sum_probs=246.8
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
.|.+.|+|..++..+..++.++++|.|.+|||.++.+.++...+. ++++++..|..++..|-++.+...++ .+|.+.
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~-DVGLMT 203 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK-DVGLMT 203 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc-ccceee
Confidence 456789999999999999999999999999998888777776543 67899999999999998888777666 467777
Q ss_pred eEeEeec---CCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCcc
Q 014085 92 GYSIRFD---DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 166 (431)
Q Consensus 92 ~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 166 (431)
|-..-.. ..+.+.+.++.++-. ..+..+.++|+||+|
T Consensus 204 GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-------------------------------------- 245 (1041)
T KOG0948|consen 204 GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-------------------------------------- 245 (1041)
T ss_pred cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh--------------------------------------
Confidence 7543222 234555555555533 447789999999998
Q ss_pred ccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhC-----CCceEEecCceeeeeEeeecCC-------
Q 014085 167 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYP------- 233 (431)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~------- 233 (431)
+|-|..||..|++++-.++ ++++.+++|||+ |+..+++|.. .+.+++.+-++.|++.+..+..
T Consensus 246 YMRDkERGVVWEETIIllP----~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylv 321 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLP----DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLV 321 (1041)
T ss_pred hccccccceeeeeeEEecc----ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEE
Confidence 9999999999999999998 788999999999 9999999983 4667888888888887744421
Q ss_pred ---CcchHHHHH--------------------------------------HHHHHHhhcCCCCcEEEEcCCHHHHHHHHH
Q 014085 234 ---EPDYLDATL--------------------------------------ITIFQVHLDEAPGDILVFLTGQEEIESVER 272 (431)
Q Consensus 234 ---~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~ 272 (431)
..++-+..+ -.++.........|+|||+-|+++|+.+|-
T Consensus 322 VDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Al 401 (1041)
T KOG0948|consen 322 VDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYAL 401 (1041)
T ss_pred EecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHH
Confidence 111111111 123333334446789999999999999998
Q ss_pred HHHHHHh------------------cCCc---CCCce---------EEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc
Q 014085 273 LVQERLL------------------QLPE---ASRKL---------VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 322 (431)
Q Consensus 273 ~l~~~~~------------------~~~~---~~~~~---------~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~ 322 (431)
++.+.-- +++. +++.+ .++.+|||+-+--++.|+-.|.+|.+++|+||.+
T Consensus 402 qm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATET 481 (1041)
T KOG0948|consen 402 QMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATET 481 (1041)
T ss_pred hhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhh
Confidence 8765321 1221 22221 4677899999999999999999999999999999
Q ss_pred cccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 323 ~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
+++|+|+|+-++|.- ..+-||. -...++|..+|+|++|||||.| .|.|+.++++.
T Consensus 482 FsiGLNMPAkTVvFT----~~rKfDG------~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 482 FSIGLNMPAKTVVFT----AVRKFDG------KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred hhhccCCcceeEEEe----eccccCC------cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 999999998776663 3333554 4447899999999999999999 79999998753
No 59
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.6e-33 Score=284.86 Aligned_cols=341 Identities=15% Similarity=0.136 Sum_probs=198.0
Q ss_pred ccCChHHHHHHHHHHHhCCC-EEEEEcCCCCChhccHhHHhhhcc-cccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc-
Q 014085 11 KSLPIASVEKRLVEEVRKND-ILIIVGETGSGKTTQLPQFLFHAG-FCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL- 87 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~-~~vi~apTGsGKT~~~~~~~~~~~-~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~- 87 (431)
.+++++|+|+++++.+..|+ ++++++|||||||..+..++.... .....++++++.|+++++.|+.+.+.++.....
T Consensus 12 ~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 12 HGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred hCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 45679999999999999998 577789999999954332222211 122345777788999999999887766554210
Q ss_pred ---------------------CCeEeEeEeecCCCChhHhHH--------------HHhccc-----------------C
Q 014085 88 ---------------------GQRVGYSIRFDDRTSTSTRIK--------------EALLDP-----------------Y 115 (431)
Q Consensus 88 ---------------------~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~-----------------~ 115 (431)
...+....+. .+...... .+.+.. .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG---~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~ 168 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQ---FADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGF 168 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECC---CChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhh
Confidence 1111111111 11111111 111111 2
Q ss_pred CCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEE
Q 014085 116 LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLI 195 (431)
Q Consensus 116 ~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 195 (431)
+.+++++|+||||....-.+.+..+++... + . ....+.|++
T Consensus 169 L~~v~~LVLDEADLd~gF~~~l~~Il~~l~--r------------------------------------p-~~~rprQtL 209 (844)
T TIGR02621 169 LGQDALIVHDEAHLEPAFQELLKQIMNEQQ--R------------------------------------P-PDFLPLRVV 209 (844)
T ss_pred hccceEEEEehhhhccccHHHHHHHHHhcc--c------------------------------------C-cccccceEE
Confidence 578999999999843332232222222110 0 0 000236899
Q ss_pred EEcCCCCh--HHHHhhh-CCCceEEecCceeee-e-EeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHH
Q 014085 196 IMSASLDA--RGFSEYF-GCAKAVHVQGRQFPV-E-ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESV 270 (431)
Q Consensus 196 ~lSAT~~~--~~l~~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l 270 (431)
+||||++. ..+...+ .+...+.+....... + ..+............+..+.... ...++++||||||+++|+.+
T Consensus 210 LFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L 288 (844)
T TIGR02621 210 ELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPPSDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKV 288 (844)
T ss_pred EEecCCCccHHHHHHHHccCCceeecccccccccceEEEEecChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHH
Confidence 99999943 3444333 233222322211111 1 11222122222222333332222 23467899999999999999
Q ss_pred HHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh-----hhhCcCCC----CC-------cEEEEecCccccccccCCcEE
Q 014085 271 ERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM-----RVFAPAAA----GF-------RKVILATNIAETSVTIPGIKY 334 (431)
Q Consensus 271 ~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~-----~i~~~f~~----g~-------~~vLvaT~~~~~Gvdip~v~~ 334 (431)
++.|.+. ++ ..+||+|++.+|. .+++.|++ |. .+|||||+++++|+||+. ++
T Consensus 289 ~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~ 356 (844)
T TIGR02621 289 FAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DH 356 (844)
T ss_pred HHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ce
Confidence 9999875 54 7899999999999 77888987 43 689999999999999986 77
Q ss_pred EEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-C-cEEEEeeChhhhhcC-cCCCCCceeccCchHHHHH
Q 014085 335 VIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P-GKCFRLYPENEFDKL-EDSTKPEIKRCNLSNVILQ 411 (431)
Q Consensus 335 VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~-G~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~ 411 (431)
||+ +. .+.++|+||+||+||.| . |..+.+++.+.-+.- ...-.+++......-+.+.
T Consensus 357 VI~--------d~------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~ 416 (844)
T TIGR02621 357 LVC--------DL------------APFESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKL 416 (844)
T ss_pred EEE--------CC------------CCHHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHH
Confidence 775 22 34588999999999998 3 344555543211111 1111245555444444444
Q ss_pred HHHcCCCCCccccCC
Q 014085 412 LKALGVDDIIGFDFM 426 (431)
Q Consensus 412 l~~~~~~~~~~~~~~ 426 (431)
.+-.+..+...+..+
T Consensus 417 ~~~~~~~~~~al~~l 431 (844)
T TIGR02621 417 QQLKGKNKRAALGVL 431 (844)
T ss_pred HhccccCCHHHHhhc
Confidence 444443333334333
No 60
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.2e-33 Score=300.25 Aligned_cols=298 Identities=18% Similarity=0.191 Sum_probs=199.4
Q ss_pred hhccCChHHHHHHHHHHHhCC------CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 9 QRKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g------~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
....|.+++.|+++++.+..+ .+.+++||||+|||.++...+.... ..+.+++++.|++.++.|+...+.+.
T Consensus 595 ~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~--~~g~qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--ENHKQVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred HhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 456678999999999999987 7999999999999954332222221 23567999999999999999988765
Q ss_pred hCCccCCeEeEeEeecCCCChhHhHH--------------HHhc-ccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
+.. .+..++...+..........+. .++. ...+.+++++|+||+|...... +
T Consensus 673 ~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG~~~-------~----- 739 (1147)
T PRK10689 673 FAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFGVRH-------K----- 739 (1147)
T ss_pred hcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcchhH-------H-----
Confidence 442 1222322211111100000000 1111 1235789999999999532111 0
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHh---hhCCCceEEecCc-ee
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSE---YFGCAKAVHVQGR-QF 223 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~---~~~~~~~~~~~~~-~~ 223 (431)
..+.. ...+.+++++|||+.++.+.. .+.+...+..... ..
T Consensus 740 -------------------------------e~lk~----l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~ 784 (1147)
T PRK10689 740 -------------------------------ERIKA----MRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 (1147)
T ss_pred -------------------------------HHHHh----cCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCC
Confidence 01111 115779999999997666542 2334444443322 13
Q ss_pred eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
+++.+...... .. ....+..... .+++++||||+++.++.+++.|.+..+ +..+..+||+|++++|.
T Consensus 785 ~v~~~~~~~~~-~~---~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p-------~~~v~~lHG~m~q~eRe 851 (1147)
T PRK10689 785 AVKTFVREYDS-LV---VREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVP-------EARIAIGHGQMRERELE 851 (1147)
T ss_pred CceEEEEecCc-HH---HHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCC-------CCcEEEEeCCCCHHHHH
Confidence 34443332211 11 1111222221 257899999999999999999988632 67888999999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~ 382 (431)
.++..|++|+.+|||||+++++|+|+|++++||. .++. ..+...|+||+||+||.| .|.||.
T Consensus 852 ~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad---------~fglaq~~Qr~GRvGR~g~~g~a~l 914 (1147)
T PRK10689 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERAD---------HFGLAQLHQLRGRVGRSHHQAYAWL 914 (1147)
T ss_pred HHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCC---------CCCHHHHHHHhhccCCCCCceEEEE
Confidence 9999999999999999999999999999999994 2211 224456999999999999 999999
Q ss_pred eeCh
Q 014085 383 LYPE 386 (431)
Q Consensus 383 l~~~ 386 (431)
++..
T Consensus 915 l~~~ 918 (1147)
T PRK10689 915 LTPH 918 (1147)
T ss_pred EeCC
Confidence 9853
No 61
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=268.21 Aligned_cols=311 Identities=20% Similarity=0.298 Sum_probs=226.4
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcc-------cccCCcEEEEeCchhHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAG-------FCRDGKLIGVTQPRRVAAV 73 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~-------~~~~~~~v~v~~p~~~l~~ 73 (431)
.++.++..+...++|+|-+-++.+++|++.+-+|-|||||| +.+|.++.-.. ....+...+++.|.++++.
T Consensus 181 ~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELAr 260 (610)
T KOG0341|consen 181 LLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELAR 260 (610)
T ss_pred HHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHH
Confidence 45566667778899999999999999999999999999999 66676663211 1345778888999999999
Q ss_pred HHhHHHHHHhCC---------ccCCeEeEeE----------eecCCCChhHhHHHHhcccC--CCCCcEEEEecCCcCcc
Q 014085 74 TVAKRVAEESGV---------ELGQRVGYSI----------RFDDRTSTSTRIKEALLDPY--LSRYSAIIVDEAHERTV 132 (431)
Q Consensus 74 ~~~~~~~~~~~~---------~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~lViDEah~~~~ 132 (431)
|...-+..+... ....++|... +....+.++.++..++.... +.-+.++++|||
T Consensus 261 Qt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEA----- 335 (610)
T KOG0341|consen 261 QTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEA----- 335 (610)
T ss_pred HHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhH-----
Confidence 988765554431 1122222110 11122344555555554432 445788999999
Q ss_pred chHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHH-hh
Q 014085 133 HTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EY 209 (431)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~-~~ 209 (431)
|+|+|++|...+..+...+. ...|.+++|||++.+ .++ ..
T Consensus 336 ---------------------------------DRmiDmGFEddir~iF~~FK----~QRQTLLFSATMP~KIQ~FAkSA 378 (610)
T KOG0341|consen 336 ---------------------------------DRMIDMGFEDDIRTIFSFFK----GQRQTLLFSATMPKKIQNFAKSA 378 (610)
T ss_pred ---------------------------------HHHhhccchhhHHHHHHHHh----hhhheeeeeccccHHHHHHHHhh
Confidence 79999999887777766665 567999999999333 333 22
Q ss_pred hCCCceEEecCce-eeeeEeeecCCCcchHHH--HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCC
Q 014085 210 FGCAKAVHVQGRQ-FPVEILYTLYPEPDYLDA--TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASR 286 (431)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~ 286 (431)
+-.+..+++...- -.+++. ...+|+.+ .+..+++. ......++||||..+..++.++.+|--.
T Consensus 379 LVKPvtvNVGRAGAAsldVi----QevEyVkqEaKiVylLeC-LQKT~PpVLIFaEkK~DVD~IhEYLLlK--------- 444 (610)
T KOG0341|consen 379 LVKPVTVNVGRAGAASLDVI----QEVEYVKQEAKIVYLLEC-LQKTSPPVLIFAEKKADVDDIHEYLLLK--------- 444 (610)
T ss_pred cccceEEecccccccchhHH----HHHHHHHhhhhhhhHHHH-hccCCCceEEEeccccChHHHHHHHHHc---------
Confidence 2223333333211 111111 11223322 22223333 3344678999999999999999998665
Q ss_pred ceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHH
Q 014085 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (431)
Q Consensus 287 ~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~ 366 (431)
|..++.+|||-.+++|...++.|+.|+-+||||||+++.|+|+|++.+||| || +|...+.|+
T Consensus 445 GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yD----------MP~eIENYV 506 (610)
T KOG0341|consen 445 GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YD----------MPEEIENYV 506 (610)
T ss_pred cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc--------CC----------ChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 88 699999999
Q ss_pred HhhcccCCCC-CcEEEEeeChh
Q 014085 367 QRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 367 qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
||+||+||.| .|.+-+|+++.
T Consensus 507 HRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 507 HRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHhcccCCCCCcceeeeeeccc
Confidence 9999999999 99999999865
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.6e-33 Score=260.17 Aligned_cols=301 Identities=17% Similarity=0.188 Sum_probs=212.0
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
.++.+.||..+....+.+ |.+++.|||=|||+++.+++.......++ .++++.|++-|+.|+...+.+..+.......
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 457889999999998877 89999999999998888887766655556 7999999999999999999999988655544
Q ss_pred eEeEeecCCCChhHhHHHHhc----------------c--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 92 GYSIRFDDRTSTSTRIKEALL----------------D--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~----------------~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
.++ +.....++...|.. . -.+.++.++|+||||. +........+.+.++...
T Consensus 91 ~lt----Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR-AvGnyAYv~Va~~y~~~~----- 160 (542)
T COG1111 91 ALT----GEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR-AVGNYAYVFVAKEYLRSA----- 160 (542)
T ss_pred eec----CCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhh-ccCcchHHHHHHHHHHhc-----
Confidence 432 23333333332221 1 2366899999999994 333333344445444433
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhhhCCCce---EEecCcee-----
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKA---VHVQGRQF----- 223 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~~~~~~~---~~~~~~~~----- 223 (431)
.+..+++||||| +.+.+.+.+.+..+ ..-.....
T Consensus 161 ------------------------------------k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Y 204 (542)
T COG1111 161 ------------------------------------KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPY 204 (542)
T ss_pred ------------------------------------cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHh
Confidence 677899999999 88888777644321 11111111
Q ss_pred --eeeEeeecCC--------------------------------C----c----------------c-------------
Q 014085 224 --PVEILYTLYP--------------------------------E----P----------------D------------- 236 (431)
Q Consensus 224 --~~~~~~~~~~--------------------------------~----~----------------~------------- 236 (431)
..++.+.... . . +
T Consensus 205 v~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~ 284 (542)
T COG1111 205 VKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEA 284 (542)
T ss_pred hccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHH
Confidence 1111111110 0 0 0
Q ss_pred --------------------h--------------------------------------------HHHHHHHHHHHhhcC
Q 014085 237 --------------------Y--------------------------------------------LDATLITIFQVHLDE 252 (431)
Q Consensus 237 --------------------~--------------------------------------------~~~~~~~~~~~~~~~ 252 (431)
| ++.+...+.+.....
T Consensus 285 ~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~ 364 (542)
T COG1111 285 IKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKN 364 (542)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcC
Confidence 0 000111122222234
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEE-E--------cCCCCCHHHHhhhhCcCCCCCcEEEEecCcc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV-P--------IFSSLPSEQQMRVFAPAAAGFRKVILATNIA 323 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~-~--------lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~ 323 (431)
+..++|||.+.++.++.+.+.|.+. +..+. . ...||+++++.++++.|++|+.+|||||++.
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~---------~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVg 435 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKI---------GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVG 435 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhc---------CCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccc
Confidence 4578999999999999999999886 33332 2 2358999999999999999999999999999
Q ss_pred ccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChh
Q 014085 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (431)
Q Consensus 324 ~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~ 387 (431)
++|+|||+++.||- |++ -.|...++||.|||||...|.+|.|+++.
T Consensus 436 EEGLDIp~vDlVif--------YEp----------vpSeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 436 EEGLDIPEVDLVIF--------YEP----------VPSEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred cccCCCCcccEEEE--------ecC----------CcHHHHHHHhhCccccCCCCeEEEEEecC
Confidence 99999999999996 873 46778899999999999999999998765
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=7e-34 Score=269.08 Aligned_cols=319 Identities=21% Similarity=0.233 Sum_probs=231.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHH-HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~-~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
+.++++..+.-.+.|+|.-++.+ +++|+|.+++.+|+||||.+..+ +-.......++..++++|.-+++.|-++.+..
T Consensus 205 fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgEl-AGi~~~l~~g~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 205 FKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGEL-AGIPRLLSGGKKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred HHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHh-hCcHHHHhCCCeEEEEehhHHhhcchHHHHHH
Confidence 45667777788899999877665 66999999999999999944333 32222233466788889999999888887765
Q ss_pred HhCCccCC----eEeEeE--------------eecCCCChhHhHHHHhcc-cCCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 82 ESGVELGQ----RVGYSI--------------RFDDRTSTSTRIKEALLD-PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 82 ~~~~~~~~----~~~~~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
... ..+. .+|..- .-+..+.+.+.+..++.. ..+.+++.+||||+|
T Consensus 284 rYs-~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiH-------------- 348 (830)
T COG1202 284 RYS-KLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIH-------------- 348 (830)
T ss_pred Hhh-cccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeee--------------
Confidence 543 2222 233210 001112233344444444 578899999999998
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCc
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGR 221 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~ 221 (431)
++-|..+|+.+.-.+..+..-. +..|+|++|||. |++++++.++ ...+..+.+
T Consensus 349 ------------------------tL~deERG~RLdGLI~RLr~l~-~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~R 402 (830)
T COG1202 349 ------------------------TLEDEERGPRLDGLIGRLRYLF-PGAQFIYLSATVGNPEELAKKLG-AKLVLYDER 402 (830)
T ss_pred ------------------------eccchhcccchhhHHHHHHHhC-CCCeEEEEEeecCChHHHHHHhC-CeeEeecCC
Confidence 5666677776655555554333 689999999999 9999999986 456677777
Q ss_pred eeeeeEeeecCCC----cchHHHHHHHHHHH-hhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC
Q 014085 222 QFPVEILYTLYPE----PDYLDATLITIFQV-HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (431)
Q Consensus 222 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~ 296 (431)
+.|++-+..-..+ .+...++...-+.. ....-.|++|||.+|+..|+++++.|... |+.+.+||+|
T Consensus 403 PVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaG 473 (830)
T COG1202 403 PVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK---------GLKAAPYHAG 473 (830)
T ss_pred CCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC---------CcccccccCC
Confidence 7776554433222 12222222222222 22334689999999999999999999887 9999999999
Q ss_pred CCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 297 ~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
|+..+|+.++..|.++++.++|+|-+++.|||+|+-. || |++. .|...|.+..+|.||.|||||.+
T Consensus 474 L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQ-VI---------FEsL----aMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 474 LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQ-VI---------FESL----AMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHH-HH---------HHHH----HcccccCCHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999744 44 3321 24446999999999999999998
Q ss_pred ---CcEEEEeeCh
Q 014085 377 ---PGKCFRLYPE 386 (431)
Q Consensus 377 ---~G~~~~l~~~ 386 (431)
.|++|.+..+
T Consensus 540 yHdrGkVyllvep 552 (830)
T COG1202 540 YHDRGKVYLLVEP 552 (830)
T ss_pred cccCceEEEEecC
Confidence 7999999743
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.2e-34 Score=305.05 Aligned_cols=292 Identities=21% Similarity=0.229 Sum_probs=189.0
Q ss_pred EEcCCCCChhccHhHHhhhccc-----------ccCCcEEEEeCchhHHHHHHhHHHHHHh----------C-CccCCeE
Q 014085 34 IVGETGSGKTTQLPQFLFHAGF-----------CRDGKLIGVTQPRRVAAVTVAKRVAEES----------G-VELGQRV 91 (431)
Q Consensus 34 i~apTGsGKT~~~~~~~~~~~~-----------~~~~~~v~v~~p~~~l~~~~~~~~~~~~----------~-~~~~~~~ 91 (431)
|+||||||||.++.+.+..... ..++.+++++.|+++++.++.+.+.... + ...+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999444333322211 1134679999999999999988765311 1 1122233
Q ss_pred eEeEe--------------ecCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCC
Q 014085 92 GYSIR--------------FDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADG 154 (431)
Q Consensus 92 ~~~~~--------------~~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (431)
+...+ .+..+.+++.+..++.. ..++++++||+||+|
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H-------------------------- 134 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVH-------------------------- 134 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHH--------------------------
Confidence 22111 01112333333344332 357899999999998
Q ss_pred CCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCC-ceEEecC---ceeeeeEee
Q 014085 155 HSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCA-KAVHVQG---RQFPVEILY 229 (431)
Q Consensus 155 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~-~~~~~~~---~~~~~~~~~ 229 (431)
.+++.++|..+...++.+......+.|+|++|||+ |++++++|++.. ++..+.. +..++++..
T Consensus 135 ------------~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~v 202 (1490)
T PRK09751 135 ------------AVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVV 202 (1490)
T ss_pred ------------HhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEE
Confidence 45566666666666655555444678999999999 889999999753 3222221 112222222
Q ss_pred ecCCCcch---------------HHH----HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCC--------
Q 014085 230 TLYPEPDY---------------LDA----TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP-------- 282 (431)
Q Consensus 230 ~~~~~~~~---------------~~~----~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~-------- 282 (431)
......+. ... ....+++.. ....++||||||++.|+.++..|++......
T Consensus 203 p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~ 280 (1490)
T PRK09751 203 PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAV 280 (1490)
T ss_pred ecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccc
Confidence 11100000 001 111122222 2357899999999999999999987532100
Q ss_pred ----------------cCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceee
Q 014085 283 ----------------EASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 346 (431)
Q Consensus 283 ----------------~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~ 346 (431)
.......+..|||+|++++|..+++.|++|++++||||+++++|||+++|++||+ |
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~ 352 (1490)
T PRK09751 281 DAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------V 352 (1490)
T ss_pred hhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------e
Confidence 0011234678999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCceeeeeeecCHHHHHHhhcccCCCC--CcEEEEe
Q 014085 347 DPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRL 383 (431)
Q Consensus 347 d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G~~~~l 383 (431)
+ .|.+..+|+||+||+||.. .+.++.+
T Consensus 353 g----------sP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 353 A----------TPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred C----------CCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 5 5899999999999999974 4455533
No 65
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=276.98 Aligned_cols=323 Identities=16% Similarity=0.176 Sum_probs=239.1
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
....|++.++|++++-.+..|+.+.+.|+|.||||.++...+.... +++.+.++..|.+++..|-++.+...++. ++
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vg 368 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--KHMTRTIYTSPIKALSNQKFRDFKETFGD-VG 368 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--hhccceEecchhhhhccchHHHHHHhccc-cc
Confidence 4566889999999999999999999999999999977766665542 23668999999999999999988887764 44
Q ss_pred CeEeEeEe---ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 014085 89 QRVGYSIR---FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNE 163 (431)
Q Consensus 89 ~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (431)
...|-..- ......+.+.++.++-+ -.+..+.++|+||+|
T Consensus 369 LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH----------------------------------- 413 (1248)
T KOG0947|consen 369 LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH----------------------------------- 413 (1248)
T ss_pred eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-----------------------------------
Confidence 55553321 11234555556655533 347789999999998
Q ss_pred CccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCc---eEEec--CceeeeeEeeecCCC---
Q 014085 164 NSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAK---AVHVQ--GRQFPVEILYTLYPE--- 234 (431)
Q Consensus 164 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~--- 234 (431)
++.|..||+.|++.+.-++ .++++|++|||. |+.++++|.|..+ ++.+. .++.|++.+......
T Consensus 414 ---YiND~eRGvVWEEViIMlP----~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~k 486 (1248)
T KOG0947|consen 414 ---YINDVERGVVWEEVIIMLP----RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFK 486 (1248)
T ss_pred ---ecccccccccceeeeeecc----ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceeh
Confidence 9999999999999999998 688999999999 9999999998432 33333 444555444322200
Q ss_pred -----cc-------------------------------------------------------hH-HHHHHHHHHHhhcCC
Q 014085 235 -----PD-------------------------------------------------------YL-DATLITIFQVHLDEA 253 (431)
Q Consensus 235 -----~~-------------------------------------------------------~~-~~~~~~~~~~~~~~~ 253 (431)
.. .. ...+..+++.+...+
T Consensus 487 iidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~ 566 (1248)
T KOG0947|consen 487 IIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKN 566 (1248)
T ss_pred hhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcc
Confidence 00 00 012334455555556
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHh------------------cCC---cCCCc---------eEEEEcCCCCCHHHHh
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLL------------------QLP---EASRK---------LVTVPIFSSLPSEQQM 303 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~------------------~~~---~~~~~---------~~v~~lhg~~~~~~r~ 303 (431)
.-|++|||-|++.|++.++.|...-- .+. +.+|. -.++++|||+-+--++
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE 646 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKE 646 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHH
Confidence 67899999999999999999876321 111 11111 1467789999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKC 380 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~ 380 (431)
-|+..|..|.++||+||.++++|||+|+.++|++ +...-.+-.+....+.+|.|++|||||.| .|++
T Consensus 647 ~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~----------Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTV 716 (1248)
T KOG0947|consen 647 VVELLFQRGLVKVLFATETFAMGVNMPARTVVFS----------SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTV 716 (1248)
T ss_pred HHHHHHhcCceEEEeehhhhhhhcCCCceeEEee----------ehhhccCcceeecCChhHHhhhccccccccCcCceE
Confidence 9999999999999999999999999998666664 33333334446788899999999999999 6888
Q ss_pred EEeeCh
Q 014085 381 FRLYPE 386 (431)
Q Consensus 381 ~~l~~~ 386 (431)
+.+...
T Consensus 717 ii~~~~ 722 (1248)
T KOG0947|consen 717 IIMCKD 722 (1248)
T ss_pred EEEecC
Confidence 877643
No 66
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-33 Score=281.61 Aligned_cols=310 Identities=19% Similarity=0.278 Sum_probs=229.5
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccc----ccCCcEEEEeCchhHHHHHHhH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGF----CRDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~----~~~~~~v~v~~p~~~l~~~~~~ 77 (431)
++.++..+.-+++++|.++|+++..|++++.+|.|||||| +++|.+-..... ..+|+.++++.|+++++.|+.+
T Consensus 377 l~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r 456 (997)
T KOG0334|consen 377 LETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHR 456 (997)
T ss_pred HHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHH
Confidence 4445555556899999999999999999999999999999 556666322211 2347899999999999999999
Q ss_pred HHHHHhCCccCCeEeEeEeecCCCChhHhHH-------------------HHhcccC---CCCCcEEEEecCCcCccchH
Q 014085 78 RVAEESGVELGQRVGYSIRFDDRTSTSTRIK-------------------EALLDPY---LSRYSAIIVDEAHERTVHTD 135 (431)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~---~~~~~~lViDEah~~~~~~~ 135 (431)
.+..+... .+..+--+. +.......+. .+.++.. +.++.++|+|||
T Consensus 457 ~~~kf~k~-l~ir~v~vy---gg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea-------- 524 (997)
T KOG0334|consen 457 EVRKFLKL-LGIRVVCVY---GGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA-------- 524 (997)
T ss_pred HHHHHHhh-cCceEEEec---CCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh--------
Confidence 88877664 222221111 1111111111 1222222 445669999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHH-hhhCC
Q 014085 136 VLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGC 212 (431)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~-~~~~~ 212 (431)
|+|+|++|.+++..++..+. +..|.+++|||.+.. .++ ..+..
T Consensus 525 ------------------------------DrmfdmgfePq~~~Ii~nlr----pdrQtvlfSatfpr~m~~la~~vl~~ 570 (997)
T KOG0334|consen 525 ------------------------------DRMFDMGFEPQITRILQNLR----PDRQTVLFSATFPRSMEALARKVLKK 570 (997)
T ss_pred ------------------------------hhhheeccCcccchHHhhcc----hhhhhhhhhhhhhHHHHHHHHHhhcC
Confidence 79999999999988888874 889999999999443 444 33443
Q ss_pred CceEEecCce---eeeeEeeecCC-CcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCce
Q 014085 213 AKAVHVQGRQ---FPVEILYTLYP-EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 288 (431)
Q Consensus 213 ~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 288 (431)
+..+.+.++. ..+...+...+ +.+.+.++...+-.. ...+++||||.+...|..+.+.|.+. ++
T Consensus 571 Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~---~e~~~tiiFv~~qe~~d~l~~~L~~a---------g~ 638 (997)
T KOG0334|consen 571 PVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGER---YEDGKTIIFVDKQEKADALLRDLQKA---------GY 638 (997)
T ss_pred CeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHH---hhcCCEEEEEcCchHHHHHHHHHHhc---------Cc
Confidence 3234444332 12333333333 333333433332222 22788999999999999999999987 99
Q ss_pred EEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHh
Q 014085 289 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQR 368 (431)
Q Consensus 289 ~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr 368 (431)
.+..+||+.++.+|..+++.||++..++||||+++++|+|++++.+||| || +|...+.|+||
T Consensus 639 ~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn--------yd----------~pnh~edyvhR 700 (997)
T KOG0334|consen 639 NCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN--------YD----------FPNHYEDYVHR 700 (997)
T ss_pred chhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE--------cc----------cchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 77 67788889999
Q ss_pred hcccCCCC-CcEEEEeeChhhh
Q 014085 369 SGRAGREG-PGKCFRLYPENEF 389 (431)
Q Consensus 369 ~GR~gR~~-~G~~~~l~~~~~~ 389 (431)
.|||||.| .|.|++|+++++.
T Consensus 701 ~gRTgragrkg~AvtFi~p~q~ 722 (997)
T KOG0334|consen 701 VGRTGRAGRKGAAVTFITPDQL 722 (997)
T ss_pred hcccccCCccceeEEEeChHHh
Confidence 99999999 8999999998544
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.6e-32 Score=268.99 Aligned_cols=307 Identities=19% Similarity=0.193 Sum_probs=199.0
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
...++++.||.+++..++ |+|++|++|||+|||+++..++.++..-....+++++.|++.++.|+...+.. .+.. ..
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~-~~ 134 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSI-YLIP-YS 134 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhh-ccCc-cc
Confidence 345789999999999999 99999999999999988888888777655567899999999999888754433 3322 11
Q ss_pred eEeEeEeec-------------CCCChhHhHHHHhcccC---CCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 90 RVGYSIRFD-------------DRTSTSTRIKEALLDPY---LSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 90 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
.++...+.. ..+.++..+..-+.+.. ++.+.++||||||....+..+ ..+++.++...
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y-~~Vmr~~l~~k----- 208 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY-NNIMREYLDLK----- 208 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH-HHHHHHHHHhh-----
Confidence 111111100 01112222222222222 567999999999964433333 23334443322
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHHhhhCCCceEEecC-----------
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFSEYFGCAKAVHVQG----------- 220 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~~~~~~~~~~~~~~----------- 220 (431)
....|+++||||+ +.+.+.++..+.-.. ++-
T Consensus 209 -----------------------------------~~~~qILgLTASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~ 252 (746)
T KOG0354|consen 209 -----------------------------------NQGNQILGLTASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYE 252 (746)
T ss_pred -----------------------------------hccccEEEEecCCCccHHHHHHHHHhhhee-cccchhhhhhhhHH
Confidence 0333999999999 555555443211000 000
Q ss_pred -----ceeeeeE-----------------------------------eeec---------C---C---------------
Q 014085 221 -----RQFPVEI-----------------------------------LYTL---------Y---P--------------- 233 (431)
Q Consensus 221 -----~~~~~~~-----------------------------------~~~~---------~---~--------------- 233 (431)
...++++ .|.. . +
T Consensus 253 ~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~ 332 (746)
T KOG0354|consen 253 ELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKY 332 (746)
T ss_pred HHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHH
Confidence 0000000 0000 0 0
Q ss_pred ------------------------------------------------------------CcchHHHHHHHHHHHhhcCC
Q 014085 234 ------------------------------------------------------------EPDYLDATLITIFQVHLDEA 253 (431)
Q Consensus 234 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 253 (431)
....++.+...+.+.....+
T Consensus 333 ~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~ 412 (746)
T KOG0354|consen 333 NLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNP 412 (746)
T ss_pred HHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCC
Confidence 00001112223333334455
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEc--------CCCCCHHHHhhhhCcCCCCCcEEEEecCcccc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMRVFAPAAAGFRKVILATNIAET 325 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~l--------hg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~ 325 (431)
..++||||.+|+.|..+..+|...... ++....+ ..+|++.++.++++.|++|+++|||||+++|+
T Consensus 413 dsR~IIFve~R~sa~~l~~~l~~~~~~------~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EE 486 (746)
T KOG0354|consen 413 DSRTIIFVETRESALALKKWLLQLHEL------GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEE 486 (746)
T ss_pred CccEEEEEehHHHHHHHHHHHHhhhhc------ccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhc
Confidence 678999999999999999999863211 2333222 24999999999999999999999999999999
Q ss_pred ccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeCh
Q 014085 326 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (431)
Q Consensus 326 Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~ 386 (431)
|+||+.++.||- ||. ..+...++||+|| ||+..|+|+.+++.
T Consensus 487 GLDI~ec~lVIc--------Yd~----------~snpIrmIQrrGR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 487 GLDIGECNLVIC--------YDY----------SSNPIRMVQRRGR-GRARNSKCVLLTTG 528 (746)
T ss_pred cCCcccccEEEE--------ecC----------CccHHHHHHHhcc-ccccCCeEEEEEcc
Confidence 999999999998 774 3456679999999 99999999999974
No 68
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.5e-32 Score=262.84 Aligned_cols=309 Identities=17% Similarity=0.188 Sum_probs=232.6
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
..+..++++|..+++.+..+-+++|++..|+|||.++..+...... ......++++.|+++++.|+.+.+........+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred hcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 3566788999999999999999999999999999444333333222 223456788889999999999887766543333
Q ss_pred CeEeEeEeec-------------CCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 89 QRVGYSIRFD-------------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 89 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
..+..-+++. ..+.++.++..+... -..++++++|+|||
T Consensus 123 ~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA-------------------------- 176 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA-------------------------- 176 (980)
T ss_pred cceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccH--------------------------
Confidence 3222221111 123444555544332 23678999999999
Q ss_pred CCCCCCCCCCCcccccc-CCCCCCCcccccccccCCCCCceEEEEcCCC--ChH-HHHhhhCCCceEEecCce---eeee
Q 014085 154 GHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DAR-GFSEYFGCAKAVHVQGRQ---FPVE 226 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~-~l~~~~~~~~~~~~~~~~---~~~~ 226 (431)
|.+.+ ..|..++.-+++.++ ...|++.+|||. +.+ .+++++.++..+..+.+. ..++
T Consensus 177 ------------DkL~~t~sfq~~In~ii~slP----~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 177 ------------DKLMDTESFQDDINIIINSLP----QIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIK 240 (980)
T ss_pred ------------HhhhchhhHHHHHHHHHHhcc----hhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechh
Confidence 45555 445444555555554 677999999998 333 456888888888877543 5566
Q ss_pred EeeecCCCcc----hHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHH
Q 014085 227 ILYTLYPEPD----YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (431)
Q Consensus 227 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r 302 (431)
.++...+... ....+...+-.++...+..+.||||+....|+.++..|... |+.+.++.|.|++.+|
T Consensus 241 Qyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss---------G~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 241 QYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS---------GLDVTFISGAMSQKDR 311 (980)
T ss_pred heeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc---------CCCeEEeccccchhHH
Confidence 6666555542 22334455556666677778999999999999999999886 9999999999999999
Q ss_pred hhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEE
Q 014085 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (431)
Q Consensus 303 ~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~ 381 (431)
..++..++.-..+|||+||..+||||-+.|++||| .| .|.+..+|.||+|||||.| .|.++
T Consensus 312 l~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD----------~p~d~eTY~HRIGRAgRFG~~G~aV 373 (980)
T KOG4284|consen 312 LLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------ID----------APADEETYFHRIGRAGRFGAHGAAV 373 (980)
T ss_pred HHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cC----------CCcchHHHHHHhhhcccccccceeE
Confidence 99999999999999999999999999999999999 66 6999999999999999999 89999
Q ss_pred EeeChh
Q 014085 382 RLYPEN 387 (431)
Q Consensus 382 ~l~~~~ 387 (431)
+++..+
T Consensus 374 T~~~~~ 379 (980)
T KOG4284|consen 374 TLLEDE 379 (980)
T ss_pred EEeccc
Confidence 998654
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.1e-31 Score=258.20 Aligned_cols=283 Identities=18% Similarity=0.228 Sum_probs=174.0
Q ss_pred EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeE----e----------
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI----R---------- 96 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~---------- 96 (431)
+++++||||||||.++..++........+.+++++.|++.++.++.+++...++...+...+... .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47899999999997766666554333345688999999999999999988876643221111100 0
Q ss_pred --------------ecCCCChhHhHHHHhcccC--------CCCCcEEEEecCCcCccch-HHHHHHHHHHHHhhccccC
Q 014085 97 --------------FDDRTSTSTRIKEALLDPY--------LSRYSAIIVDEAHERTVHT-DVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 97 --------------~~~~~~~~~~~~~~~~~~~--------~~~~~~lViDEah~~~~~~-~~~~~~~~~~~~~~~~~~~ 153 (431)
......+...+...+.... .-..+++|+||+|...... ..+..+++.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~----- 153 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--D----- 153 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--H-----
Confidence 0001111222111111100 1123789999999765432 22333333221 1
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEE----ecCce-eee-eE
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVH----VQGRQ-FPV-EI 227 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~----~~~~~-~~~-~~ 227 (431)
.+.+++++|||++ +.+.+++....... .+... ... ..
T Consensus 154 ------------------------------------~~~~~i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (358)
T TIGR01587 154 ------------------------------------NDVPILLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERH 196 (358)
T ss_pred ------------------------------------cCCCEEEEecCch-HHHHHHHhcCCCcccccCCCCccccccccc
Confidence 4578999999995 45556553221110 01000 000 01
Q ss_pred ee-ecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhh-
Q 014085 228 LY-TLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV- 305 (431)
Q Consensus 228 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i- 305 (431)
.+ ............+..+.... ..++++||||+|+++|+.++..|.+... ...+..+||++++.+|..+
T Consensus 197 ~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~-------~~~~~~~h~~~~~~~r~~~~ 267 (358)
T TIGR01587 197 RFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAP-------EEEIMLLHSRFTEKDRAKKE 267 (358)
T ss_pred cceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcC-------CCeEEEEECCCCHHHHHHHH
Confidence 01 00111111111222222222 2367899999999999999999988621 2368999999999999764
Q ss_pred ---hCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC--Cc--
Q 014085 306 ---FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG--PG-- 378 (431)
Q Consensus 306 ---~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G-- 378 (431)
++.|++|..+|||||+++++|+|++ +++||+ | +.+.++|+||+||+||.| .|
T Consensus 268 ~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 268 AELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------E------------LAPIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE--------c------------CCCHHHHHHHhccccCCCCCCCCC
Confidence 8899999999999999999999995 777776 3 345788999999999987 33
Q ss_pred -EEEEeeChh
Q 014085 379 -KCFRLYPEN 387 (431)
Q Consensus 379 -~~~~l~~~~ 387 (431)
.+|.+....
T Consensus 327 ~~~~v~~~~~ 336 (358)
T TIGR01587 327 FEVYIITIAP 336 (358)
T ss_pred CeEEEEeecC
Confidence 667666543
No 70
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.7e-32 Score=249.33 Aligned_cols=306 Identities=16% Similarity=0.272 Sum_probs=220.5
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc-ccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc---
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA-GFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE--- 86 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~-~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~--- 86 (431)
++-.+..+|+.++..+.+|.++.+++++|+|||......++.. ........++++.|+++++.|..+.........
T Consensus 45 GFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 45 GFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred ccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 3446789999999999999999999999999994433333332 223334578889999999999886544333221
Q ss_pred cCCeEeEeEee-----------cCCCChhHhHHHHhccc--CCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccC
Q 014085 87 LGQRVGYSIRF-----------DDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSAD 153 (431)
Q Consensus 87 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (431)
+..++|..... .....++.++...+... ....++++|+||+
T Consensus 125 v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa-------------------------- 178 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA-------------------------- 178 (397)
T ss_pred eeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch--------------------------
Confidence 11122211110 11112233333333221 2345999999999
Q ss_pred CCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHH--H-hhhCCCceEEecCcee---eeeE
Q 014085 154 GHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGF--S-EYFGCAKAVHVQGRQF---PVEI 227 (431)
Q Consensus 154 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l--~-~~~~~~~~~~~~~~~~---~~~~ 227 (431)
|.|+..+|..++..+.+.+. ++.|++++|||.+.+.+ . +|..++..+.+..... ..+.
T Consensus 179 ------------DEmLs~gfkdqI~~if~~lp----~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq 242 (397)
T KOG0327|consen 179 ------------DEMLSRGFKDQIYDIFQELP----SDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQ 242 (397)
T ss_pred ------------HhhhccchHHHHHHHHHHcC----cchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheee
Confidence 68888888666665555555 78899999999955544 3 5666655455443321 2223
Q ss_pred eeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhC
Q 014085 228 LYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFA 307 (431)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~ 307 (431)
+|....... ++..+.+.+. ...+.+|||||++.+..+...|... ++.+..+||+|.+.+|..+.+
T Consensus 243 ~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~---------~~~~s~~~~d~~q~~R~~~~~ 307 (397)
T KOG0327|consen 243 FYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH---------GFTVSAIHGDMEQNERDTLMR 307 (397)
T ss_pred eeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC---------CceEEEeecccchhhhhHHHH
Confidence 333222222 4445555554 4667999999999999999999776 999999999999999999999
Q ss_pred cCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeCh
Q 014085 308 PAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPE 386 (431)
Q Consensus 308 ~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~ 386 (431)
.|+.|..+|||.|+.+++|+|+-++..||+ || .|...+.|+||+||+||.| +|.+++++++
T Consensus 308 ef~~gssrvlIttdl~argidv~~~slvin--------yd----------lP~~~~~yihR~gr~gr~grkg~~in~v~~ 369 (397)
T KOG0327|consen 308 EFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YD----------LPARKENYIHRIGRAGRFGRKGVAINFVTE 369 (397)
T ss_pred HhhcCCceEEeeccccccccchhhcceeee--------ec----------cccchhhhhhhcccccccCCCceeeeeehH
Confidence 999999999999999999999999999999 77 4788888999999999999 9999999988
Q ss_pred hhhhc
Q 014085 387 NEFDK 391 (431)
Q Consensus 387 ~~~~~ 391 (431)
++...
T Consensus 370 ~d~~~ 374 (397)
T KOG0327|consen 370 EDVRD 374 (397)
T ss_pred hhHHH
Confidence 76543
No 71
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=1.4e-31 Score=275.48 Aligned_cols=325 Identities=18% Similarity=0.199 Sum_probs=242.4
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc--
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE-- 86 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~-- 86 (431)
....|++.++|++++..+.+|+.++++||||||||.+..+.+...... ++++++..|.+++..|.++.+...++..
T Consensus 114 ~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 114 REYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred HhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 346788999999999999999999999999999997776666665543 5569999999999999999887777743
Q ss_pred -cCCeEeEeEe-e--cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCC
Q 014085 87 -LGQRVGYSIR-F--DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (431)
Q Consensus 87 -~~~~~~~~~~-~--~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (431)
+|...|-..- . .....+.+.+++++-. ..+..+..+|+||+|
T Consensus 192 ~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-------------------------------- 239 (1041)
T COG4581 192 MVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-------------------------------- 239 (1041)
T ss_pred hccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee--------------------------------
Confidence 3444443221 1 1122344556655544 457789999999998
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhC-----CCceEEecCceeeeeEeeecCC-
Q 014085 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYP- 233 (431)
Q Consensus 161 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 233 (431)
+|.|..+|+.|+..+..++ .++++|+||||. |++++++|++ +..++..+.++.|+..++....
T Consensus 240 ------yi~D~eRG~VWEE~Ii~lP----~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~ 309 (1041)
T COG4581 240 ------YIGDRERGVVWEEVIILLP----DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKG 309 (1041)
T ss_pred ------eccccccchhHHHHHHhcC----CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCc
Confidence 9999999999999999998 678999999999 9999999996 4556777778788777765441
Q ss_pred -------CcchHHH----HH--------------------------------------HHHHHHhhcCCCCcEEEEcCCH
Q 014085 234 -------EPDYLDA----TL--------------------------------------ITIFQVHLDEAPGDILVFLTGQ 264 (431)
Q Consensus 234 -------~~~~~~~----~~--------------------------------------~~~~~~~~~~~~~~~lVF~~s~ 264 (431)
..++... .. -.+.+.......-|+|+|+-|+
T Consensus 310 l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr 389 (1041)
T COG4581 310 LFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSR 389 (1041)
T ss_pred eeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEch
Confidence 1110000 00 0122333334466899999999
Q ss_pred HHHHHHHHHHHHH-------------------HhcCCcCCCce-------------EEEEcCCCCCHHHHhhhhCcCCCC
Q 014085 265 EEIESVERLVQER-------------------LLQLPEASRKL-------------VTVPIFSSLPSEQQMRVFAPAAAG 312 (431)
Q Consensus 265 ~~~~~l~~~l~~~-------------------~~~~~~~~~~~-------------~v~~lhg~~~~~~r~~i~~~f~~g 312 (431)
..|+..+..+... +..+..+..++ .+..+|+||-+..+..+++.|..|
T Consensus 390 ~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G 469 (1041)
T COG4581 390 RGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG 469 (1041)
T ss_pred hhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc
Confidence 9999998877621 11222111111 345789999999999999999999
Q ss_pred CcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 313 FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 313 ~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
.++|++||.+++.|+|+|+-++|+ +++.| ||. -...+.+..+|.|+.|||||.| .|.++.+..+.
T Consensus 470 LvkvvFaTeT~s~GiNmPartvv~-~~l~K---~dG------~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 470 LVKVVFATETFAIGINMPARTVVF-TSLSK---FDG------NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ceeEEeehhhhhhhcCCcccceee-eeeEE---ecC------CceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999999999999766666 44433 552 2336899999999999999999 79999886543
No 72
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=6.4e-31 Score=263.95 Aligned_cols=323 Identities=18% Similarity=0.206 Sum_probs=222.0
Q ss_pred ChHHHHHHHHHHHh-CCCEEEEEcCCCCChhccHhHHhhhccc--------ccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 14 PIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGF--------CRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~-~g~~~vi~apTGsGKT~~~~~~~~~~~~--------~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
....+|.++.+.+. .++|.+||||||||||-++.+.+.+.-. .++.-+++++.|.++++.++.+.+.+.+.
T Consensus 110 ~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~ 189 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA 189 (1230)
T ss_pred HHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc
Confidence 46689999999887 5689999999999999555544433221 23455789999999999999887766544
Q ss_pred CccCCeEeEeEeecCCCChhH------------hHH----HHh-cccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 85 VELGQRVGYSIRFDDRTSTST------------RIK----EAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~------------~~~----~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
..+..+.-..+ +......+ +.. ... ...+++.++++|+||+|
T Consensus 190 -~~gi~v~ELTG-D~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH------------------- 248 (1230)
T KOG0952|consen 190 -PLGISVRELTG-DTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH------------------- 248 (1230)
T ss_pred -cccceEEEecC-cchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh-------------------
Confidence 12333321111 11111111 111 000 11347789999999999
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCccccccccc---CCCCCceEEEEcCCC-ChHHHHhhhCCC---ceEEecC
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG---RKFAPLKLIIMSASL-DARGFSEYFGCA---KAVHVQG 220 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~lSAT~-~~~~l~~~~~~~---~~~~~~~ 220 (431)
++...||+.++.++.+..+ .....+|+|++|||+ |-+++++|++.. .++.++.
T Consensus 249 --------------------lLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~ 308 (1230)
T KOG0952|consen 249 --------------------LLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQ 308 (1230)
T ss_pred --------------------hhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecc
Confidence 5555566666655555442 222678999999999 999999999853 4666666
Q ss_pred ceeee--eEeeecCCCc-------chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc------CC
Q 014085 221 RQFPV--EILYTLYPEP-------DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------AS 285 (431)
Q Consensus 221 ~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~------~~ 285 (431)
+..|+ ...+...... ...+.....+.+.+. .+.+++|||++++++.+.|+.|.+....... ..
T Consensus 309 ~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~ 386 (1230)
T KOG0952|consen 309 RYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP 386 (1230)
T ss_pred cccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh
Confidence 55544 4444333322 111222334444443 3778999999999999999999887642211 00
Q ss_pred --------CceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeee
Q 014085 286 --------RKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 357 (431)
Q Consensus 286 --------~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~ 357 (431)
=......+|+||...+|..+++.|++|.++||+||.++++|+|+|+ .+||-. .++.||+..|.-
T Consensus 387 ~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIK---GT~~ydsskg~f---- 458 (1230)
T KOG0952|consen 387 RNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIK---GTQVYDSSKGSF---- 458 (1230)
T ss_pred hhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEec---CCcccccccCce----
Confidence 0135677899999999999999999999999999999999999997 455543 477899887654
Q ss_pred eecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 358 VPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 358 ~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
...+..+.+|..|||||.+ .|..+.+.+.+
T Consensus 459 ~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 459 VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred eeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 3677888999999999988 67777776644
No 73
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=3e-30 Score=258.94 Aligned_cols=291 Identities=16% Similarity=0.092 Sum_probs=187.9
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
...++++|.+++..+..+++.++++|||+|||.++..++... ......+++++.|++.++.|+.+.+.++.........
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~-~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYY-LENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH-HhcCCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 368999999999999999999999999999996554433211 1112337888999999999999988876543221111
Q ss_pred eEeEee------cCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 014085 92 GYSIRF------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (431)
Q Consensus 92 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (431)
+...+. ...+.+.+.+.... ...+.+++++|+||||..... .+..+++..
T Consensus 191 ~i~~g~~~~~~~~I~VaT~qsl~~~~-~~~~~~~~~iIvDEaH~~~~~--~~~~il~~~--------------------- 246 (501)
T PHA02558 191 KIYSGTAKDTDAPIVVSTWQSAVKQP-KEWFDQFGMVIVDECHLFTGK--SLTSIITKL--------------------- 246 (501)
T ss_pred EEecCcccCCCCCEEEeeHHHHhhch-hhhccccCEEEEEchhcccch--hHHHHHHhh---------------------
Confidence 111110 11122223322211 235678999999999954321 122222211
Q ss_pred cccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh-H--H--HHhhhCCCceEEec-------CceeeeeEee--ec
Q 014085 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA-R--G--FSEYFGCAKAVHVQ-------GRQFPVEILY--TL 231 (431)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~-~--~--l~~~~~~~~~~~~~-------~~~~~~~~~~--~~ 231 (431)
.+..++++||||+.. + . +..++|.. ...+. +...++++.. ..
T Consensus 247 -----------------------~~~~~~lGLTATp~~~~~~~~~~~~~fG~i-~~~v~~~~li~~g~l~~~~~~~v~~~ 302 (501)
T PHA02558 247 -----------------------DNCKFKFGLTGSLRDGKANILQYVGLFGDI-FKPVTTSQLMEEGQVTDLKINSIFLR 302 (501)
T ss_pred -----------------------hccceEEEEeccCCCccccHHHHHHhhCCc-eEEecHHHHHhCCCcCCceEEEEecc
Confidence 023468999999932 2 1 22344422 11111 1111111110 00
Q ss_pred CC--------CcchH------------HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEE
Q 014085 232 YP--------EPDYL------------DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (431)
Q Consensus 232 ~~--------~~~~~------------~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (431)
.+ ..++. ...+..+..... ..+.+++|||++.++++.+++.|++. +..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~ 372 (501)
T PHA02558 303 YPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVY 372 (501)
T ss_pred CCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEE
Confidence 00 01111 011111111122 34578999999999999999999987 88999
Q ss_pred EcCCCCCHHHHhhhhCcCCCCCcEEEEec-CccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhc
Q 014085 292 PIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSG 370 (431)
Q Consensus 292 ~lhg~~~~~~r~~i~~~f~~g~~~vLvaT-~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~G 370 (431)
.+||+++.++|..+++.|++|+..||||| +++++|+|+|++++||. ++ ++.+...|+||+|
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~----------p~~s~~~~~QriG 434 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AH----------PSKSKIIVLQSIG 434 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ec----------CCcchhhhhhhhh
Confidence 99999999999999999999999999998 89999999999999995 33 5677888999999
Q ss_pred ccCCCCCcE
Q 014085 371 RAGREGPGK 379 (431)
Q Consensus 371 R~gR~~~G~ 379 (431)
|++|.++|+
T Consensus 435 R~~R~~~~K 443 (501)
T PHA02558 435 RVLRKHGSK 443 (501)
T ss_pred ccccCCCCC
Confidence 999999654
No 74
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=7.4e-30 Score=245.28 Aligned_cols=279 Identities=18% Similarity=0.139 Sum_probs=169.8
Q ss_pred HHHHHHHHHhCCC--EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc---cCCeEe
Q 014085 18 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE---LGQRVG 92 (431)
Q Consensus 18 ~Q~~~~~~~~~g~--~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~---~~~~~~ 92 (431)
+|.+++..+.+++ +++++||||||||.++...+... +..++++.|++.++.++.+++..+.... .+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 4899999999887 47889999999996554444432 2246777899999999888877765311 011111
Q ss_pred EeEee----------------------------------cCCCChhHhHHHHhcc----c------CCCCCcEEEEecCC
Q 014085 93 YSIRF----------------------------------DDRTSTSTRIKEALLD----P------YLSRYSAIIVDEAH 128 (431)
Q Consensus 93 ~~~~~----------------------------------~~~~~~~~~~~~~~~~----~------~~~~~~~lViDEah 128 (431)
...+. ......++.+..++.. + ++.+++++|+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 00000 0000111222222111 1 24789999999999
Q ss_pred cCccchHHHHHHH-HHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH
Q 014085 129 ERTVHTDVLLGLL-KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS 207 (431)
Q Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~ 207 (431)
..+.+....+... ......+ ......+++++|||+++....
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~--------------------------------------~~~~~~~~i~lSAT~~~~~~~ 197 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIR--------------------------------------FFECRRKFVFLSATPDPALIL 197 (357)
T ss_pred ccCcccchhhhhhhHHHHHHH--------------------------------------hhhcCCcEEEEecCCCHHHHH
Confidence 7665432211111 1110000 000346899999999765443
Q ss_pred hhhC----CCceEEecCc--e--------------------eeeeEeeecCCC--cchHHHHHHHHHHHhhcCCCCcEEE
Q 014085 208 EYFG----CAKAVHVQGR--Q--------------------FPVEILYTLYPE--PDYLDATLITIFQVHLDEAPGDILV 259 (431)
Q Consensus 208 ~~~~----~~~~~~~~~~--~--------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lV 259 (431)
.+.. +.+...+.+. . .++++.+..... .+.+......+.+.....+++++||
T Consensus 198 ~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LI 277 (357)
T TIGR03158 198 RLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAI 277 (357)
T ss_pred HHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 2221 2234444433 0 123333333111 1112222333333333345678999
Q ss_pred EcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCc
Q 014085 260 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 339 (431)
Q Consensus 260 F~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~ 339 (431)
||||+++|+.++..|++.. .++.+..+||.+++++|.++ ++.+|||||+++++|+|+|.+ +||
T Consensus 278 f~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi--- 340 (357)
T TIGR03158 278 ILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI--- 340 (357)
T ss_pred EECCHHHHHHHHHHHhhhC-------CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE---
Confidence 9999999999999998751 13578889999999998754 378999999999999999987 555
Q ss_pred cccceeecCCCCceeeeeeecCHHHHHHhhcccC
Q 014085 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (431)
Q Consensus 340 ~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~g 373 (431)
+ .|.+.++|+||+||+|
T Consensus 341 ------~-----------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 ------F-----------SARDAAAFWQRLGRLG 357 (357)
T ss_pred ------E-----------CCCCHHHHhhhcccCC
Confidence 2 2778899999999997
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=5.3e-30 Score=265.38 Aligned_cols=301 Identities=20% Similarity=0.267 Sum_probs=210.9
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
..++-|.+++..++.|+++.+.+|||+||+ |.+|.++... ..+|+.|...|.+.+...+.. .+.. +...
T Consensus 264 ~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g-------itvVISPL~SLm~DQv~~L~~-~~I~-a~~L 334 (941)
T KOG0351|consen 264 GFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG-------VTVVISPLISLMQDQVTHLSK-KGIP-ACFL 334 (941)
T ss_pred cCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC-------ceEEeccHHHHHHHHHHhhhh-cCcc-eeec
Confidence 456889999999999999999999999999 5566655442 566667777776555554421 1111 0000
Q ss_pred e-----------------------EeEeecCCCChhHhHHHHhcccCCCC---CcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 92 G-----------------------YSIRFDDRTSTSTRIKEALLDPYLSR---YSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 92 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
+ ..............+...+. .+.. +.++|+||||+...|...+..-.+++.
T Consensus 335 ~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~--~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 335 SSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLA--DLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred cccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHH--hccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 0 00000000000000001111 1233 899999999999999999988888877
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhh---hCCCceEEecCce
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEY---FGCAKAVHVQGRQ 222 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~---~~~~~~~~~~~~~ 222 (431)
..+.+ .+...++++|||.+...-.+. ++-..........
T Consensus 413 ~l~~~--------------------------------------~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sf 454 (941)
T KOG0351|consen 413 LLRIR--------------------------------------FPGVPFIALTATATERVREDVIRSLGLRNPELFKSSF 454 (941)
T ss_pred HHHhh--------------------------------------CCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccC
Confidence 65521 145789999999966655444 3321111222222
Q ss_pred eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHH
Q 014085 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r 302 (431)
.+.+.+|...+..+ .......+.......+...+||||.++.+|+.++..|.+. ++.+..||+||+..+|
T Consensus 455 nR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R 524 (941)
T KOG0351|consen 455 NRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL---------GKSAAFYHAGLPPKER 524 (941)
T ss_pred CCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh---------chhhHhhhcCCCHHHH
Confidence 23333333333321 1222223334444566778999999999999999999998 8999999999999999
Q ss_pred hhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEE
Q 014085 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (431)
Q Consensus 303 ~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~ 381 (431)
..|.+.|-.++++|+|||-+++||+|.|+|+.|||+++ |.+.+.|.|.+|||||.| +..|+
T Consensus 525 ~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l------------------Pks~E~YYQE~GRAGRDG~~s~C~ 586 (941)
T KOG0351|consen 525 ETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL------------------PKSFEGYYQEAGRAGRDGLPSSCV 586 (941)
T ss_pred HHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC------------------chhHHHHHHhccccCcCCCcceeE
Confidence 99999999999999999999999999999999999664 999999999999999999 99999
Q ss_pred EeeChhhhhc
Q 014085 382 RLYPENEFDK 391 (431)
Q Consensus 382 ~l~~~~~~~~ 391 (431)
.+|+..++.+
T Consensus 587 l~y~~~D~~~ 596 (941)
T KOG0351|consen 587 LLYGYADISE 596 (941)
T ss_pred EecchhHHHH
Confidence 9999887755
No 76
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=262.28 Aligned_cols=321 Identities=24% Similarity=0.265 Sum_probs=220.4
Q ss_pred HHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~ 86 (431)
+..++...++.+|.+++..+.+|++++|+.|||||||.++.+.+..........+++++-|+.+|+..+.+++.++....
T Consensus 63 l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 63 LVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred HHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 34456667999999999999999999999999999996666666666555555578999999999999999888776644
Q ss_pred cCCeEeEeEeecCCCChhHh-----------------HHHHhcc------cCCCCCcEEEEecCCcCccchHHHHHHHHH
Q 014085 87 LGQRVGYSIRFDDRTSTSTR-----------------IKEALLD------PYLSRYSAIIVDEAHERTVHTDVLLGLLKK 143 (431)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~------~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 143 (431)
.. .+... .+++......+ +...+.. -.+.++++||+||+|
T Consensus 143 ~~-~v~~~-~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH--------------- 205 (851)
T COG1205 143 PG-KVTFG-RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH--------------- 205 (851)
T ss_pred CC-cceee-eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce---------------
Confidence 32 22111 22333333332 1121111 125679999999999
Q ss_pred HHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHH-hhhCCCceEEec--
Q 014085 144 VQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS-EYFGCAKAVHVQ-- 219 (431)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~-~~~~~~~~~~~~-- 219 (431)
++....|+++-+++.+ +..+.+..+.+.++|..|||+ ++.+++ ++++..-...++
T Consensus 206 ------------tYrGv~GS~vA~llRR---------L~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~ 264 (851)
T COG1205 206 ------------TYRGVQGSEVALLLRR---------LLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDED 264 (851)
T ss_pred ------------eccccchhHHHHHHHH---------HHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCC
Confidence 3444444444444333 333444444688999999999 777777 555433222133
Q ss_pred CceeeeeEeeecCCC---------cchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEE
Q 014085 220 GRQFPVEILYTLYPE---------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVT 290 (431)
Q Consensus 220 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v 290 (431)
+............+. .... .....+.... -.+.-++|+|+.+++.++.++....+...... ......+
T Consensus 265 g~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~~~~~-~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v 341 (851)
T COG1205 265 GSPRGLRYFVRREPPIRELAESIRRSAL-AELATLAALL-VRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAV 341 (851)
T ss_pred CCCCCceEEEEeCCcchhhhhhcccchH-HHHHHHHHHH-HHcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhhe
Confidence 333333333333331 0111 1122222222 12367899999999999999866655544333 3334678
Q ss_pred EEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeec-CHHHHHHhh
Q 014085 291 VPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPI-SKAQALQRS 369 (431)
Q Consensus 291 ~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~-s~~~~~qr~ 369 (431)
..++|++..++|.+++..|++|++.++++|++++-|+|+.+++.||.+|+ |. +..+++||+
T Consensus 342 ~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~ 403 (851)
T COG1205 342 STYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRA 403 (851)
T ss_pred eeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhh
Confidence 89999999999999999999999999999999999999999999998774 66 889999999
Q ss_pred cccCCCC-CcEEEEeeCh
Q 014085 370 GRAGREG-PGKCFRLYPE 386 (431)
Q Consensus 370 GR~gR~~-~G~~~~l~~~ 386 (431)
||+||.+ .+..+.++..
T Consensus 404 GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 404 GRAGRRGQESLVLVVLRS 421 (851)
T ss_pred hhccCCCCCceEEEEeCC
Confidence 9999999 6666666543
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1e-27 Score=254.28 Aligned_cols=108 Identities=25% Similarity=0.458 Sum_probs=98.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC--------CCHHHHhhhhCcCCCCCcEEEEecCcc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIA 323 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~--------~~~~~r~~i~~~f~~g~~~vLvaT~~~ 323 (431)
.+.+++||||++++.|+.+++.|... ++.+..+||. |++.+|..+++.|++|+.+|||||+++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 433 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVA 433 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 45678999999999999999999765 7777788775 999999999999999999999999999
Q ss_pred ccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeCh
Q 014085 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (431)
Q Consensus 324 ~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~ 386 (431)
++|+|+|++++||+ || .+.+...|+||+||+||.++|.+|.++.+
T Consensus 434 ~eGldi~~~~~VI~--------yd----------~~~s~~r~iQR~GR~gR~~~~~v~~l~~~ 478 (773)
T PRK13766 434 EEGLDIPSVDLVIF--------YE----------PVPSEIRSIQRKGRTGRQEEGRVVVLIAK 478 (773)
T ss_pred hcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccCcCCCCEEEEEEeC
Confidence 99999999999999 87 47788899999999999999999999864
No 78
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.5e-29 Score=231.66 Aligned_cols=309 Identities=19% Similarity=0.227 Sum_probs=219.0
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC-
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG- 84 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~- 84 (431)
....+-.++|+|...++.+++|++++-.|-|||||| +++|++.........+.+++++.|++.++.|..+.+.....
T Consensus 37 ~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrg 116 (529)
T KOG0337|consen 37 HKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRG 116 (529)
T ss_pred HHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccc
Confidence 334445688999999999999999999999999999 55666665555445577899999999999998876554322
Q ss_pred --CccCCeEeEeE----------eecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcc
Q 014085 85 --VELGQRVGYSI----------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (431)
Q Consensus 85 --~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~ 150 (431)
......+|... ..+....++.++..+..+ -.++.+.++|+||+
T Consensus 117 t~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa----------------------- 173 (529)
T KOG0337|consen 117 TKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA----------------------- 173 (529)
T ss_pred cchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh-----------------------
Confidence 11111122110 000011111111111111 12677999999999
Q ss_pred ccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHHh-hhCCCceEEecCc---eee
Q 014085 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFSE-YFGCAKAVHVQGR---QFP 224 (431)
Q Consensus 151 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~~-~~~~~~~~~~~~~---~~~ 224 (431)
|.++++||..+..+++..++ .+.|.++||||++.. ++++ -+.++..+.++-. ...
T Consensus 174 ---------------drlfemgfqeql~e~l~rl~----~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~ 234 (529)
T KOG0337|consen 174 ---------------DRLFEMGFQEQLHEILSRLP----ESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISEL 234 (529)
T ss_pred ---------------hHHHhhhhHHHHHHHHHhCC----CcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchh
Confidence 78999998777777777776 556999999999433 3332 2223333443311 122
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~ 304 (431)
+++.+......+....++..+-+. ....+++|||+|+.+++.+...+... ++.+..++|.|++..|..
T Consensus 235 lk~~f~~~~~a~K~aaLl~il~~~---~~~~~t~vf~~tk~hve~~~~ll~~~---------g~~~s~iysslD~~aRk~ 302 (529)
T KOG0337|consen 235 LKVRFFRVRKAEKEAALLSILGGR---IKDKQTIVFVATKHHVEYVRGLLRDF---------GGEGSDIYSSLDQEARKI 302 (529)
T ss_pred hhhheeeeccHHHHHHHHHHHhcc---ccccceeEEecccchHHHHHHHHHhc---------CCCccccccccChHhhhh
Confidence 333344333333333322222222 22457999999999999999999998 999999999999999999
Q ss_pred hhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 305 i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
-...|+.++..+||.||+++||+|+|-.+-||| || .|.+...|+||.||+.|+| .|.+|-+
T Consensus 303 ~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd----------~p~~~klFvhRVgr~aragrtg~aYs~ 364 (529)
T KOG0337|consen 303 NGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD----------FPPDDKLFVHRVGRVARAGRTGRAYSL 364 (529)
T ss_pred ccccccCCccceEEEehhhhccCCCcccccccc--------cc----------CCCCCceEEEEecchhhccccceEEEE
Confidence 999999999999999999999999999999999 77 5777777999999999999 9999999
Q ss_pred eChhh
Q 014085 384 YPENE 388 (431)
Q Consensus 384 ~~~~~ 388 (431)
+..++
T Consensus 365 V~~~~ 369 (529)
T KOG0337|consen 365 VASTD 369 (529)
T ss_pred Eeccc
Confidence 86654
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=1.1e-28 Score=226.43 Aligned_cols=293 Identities=18% Similarity=0.209 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhCC-CEEEEEcCCCCChhcc--HhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEe
Q 014085 16 ASVEKRLVEEVRKN-DILIIVGETGSGKTTQ--LPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~--~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (431)
.++|++++..+-++ +++.+++|||+|||.+ +|.++.. + ..||+.|...++..+.+-+.... ...
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~------g-ITIV~SPLiALIkDQiDHL~~LK-Vp~----- 88 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG------G-ITIVISPLIALIKDQIDHLKRLK-VPC----- 88 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhC------C-eEEEehHHHHHHHHHHHHHHhcC-Cch-----
Confidence 47899888877655 5999999999999944 4444333 3 56677777777755544333211 110
Q ss_pred EeEeecCCCChhHhHH-------------------------------HHhcccCCCCCcEEEEecCCcCccchHHHHHHH
Q 014085 93 YSIRFDDRTSTSTRIK-------------------------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLL 141 (431)
Q Consensus 93 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 141 (431)
....+..++.++-+ +-+.. -..+.++|+||||+.+.|...+.-=.
T Consensus 89 --~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~--r~~L~Y~vVDEAHCVSQWGHDFRPDY 164 (641)
T KOG0352|consen 89 --ESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN--RDVLRYIVVDEAHCVSQWGHDFRPDY 164 (641)
T ss_pred --hHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh--hceeeeEEechhhhHhhhccccCcch
Confidence 00111122222211 11111 23489999999999887764443322
Q ss_pred HHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhC----CCceEE
Q 014085 142 KKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG----CAKAVH 217 (431)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~----~~~~~~ 217 (431)
..+-..|++ .+++..+.+|||.+++.-++.+. ..|+-.
T Consensus 165 L~LG~LRS~--------------------------------------~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAi 206 (641)
T KOG0352|consen 165 LTLGSLRSV--------------------------------------CPGVPWVALTATANAKVQEDIAFQLKLRNPVAI 206 (641)
T ss_pred hhhhhHHhh--------------------------------------CCCCceEEeecccChhHHHHHHHHHhhcCcHHh
Confidence 222223211 16778999999997776655432 111111
Q ss_pred ecCceeeeeEeeecCCCcchHHHHHHHH----HHHhh-------c--CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcC
Q 014085 218 VQGRQFPVEILYTLYPEPDYLDATLITI----FQVHL-------D--EAPGDILVFLTGQEEIESVERLVQERLLQLPEA 284 (431)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------~--~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~ 284 (431)
+....+.-+.+| .....+.+..-...+ ...+. + .-.|..||||.|+++|+.++-.|...
T Consensus 207 FkTP~FR~NLFY-D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~------- 278 (641)
T KOG0352|consen 207 FKTPTFRDNLFY-DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA------- 278 (641)
T ss_pred ccCcchhhhhhH-HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc-------
Confidence 111111111111 000011111111111 11111 1 11456899999999999999999887
Q ss_pred CCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHH
Q 014085 285 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQ 364 (431)
Q Consensus 285 ~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~ 364 (431)
|+++..||.|+-..||.++.+.+.++++.||+||..++||||-|+|+.||| || .+.+..-
T Consensus 279 --Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~----------~~qn~Ag 338 (641)
T KOG0352|consen 279 --GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WS----------PSQNLAG 338 (641)
T ss_pred --CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cC----------chhhhHH
Confidence 999999999999999999999999999999999999999999999999999 55 5788888
Q ss_pred HHHhhcccCCCC-CcEEEEeeChhhhhc
Q 014085 365 ALQRSGRAGREG-PGKCFRLYPENEFDK 391 (431)
Q Consensus 365 ~~qr~GR~gR~~-~G~~~~l~~~~~~~~ 391 (431)
|.|..|||||.| +..|-..|+.+|-..
T Consensus 339 YYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 339 YYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred HHHhccccccCCCccceeeeecccchHH
Confidence 999999999999 999988898876544
No 80
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.5e-28 Score=249.89 Aligned_cols=316 Identities=17% Similarity=0.210 Sum_probs=214.7
Q ss_pred ChHHHHHHHHHHHhCC-CEEEEEcCCCCChhccHhHHhhh-ccc--c------cCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 14 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFH-AGF--C------RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~~~~~~~~-~~~--~------~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
.+..+|..+..+.+.+ +++++|||||+|||-.+..-+.+ ... + ...-.++++.|..++++++...+.+..
T Consensus 309 sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl 388 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL 388 (1674)
T ss_pred hhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc
Confidence 3678999998888866 59999999999999333222221 111 1 122368888899999988877665544
Q ss_pred C---CccCCeEeEeEeec-------CCCChhHhHHHHhcc----cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhc
Q 014085 84 G---VELGQRVGYSIRFD-------DRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (431)
Q Consensus 84 ~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~ 149 (431)
. ..++...|-..... ....++++...+-.+ .+.+-++++|+||.|
T Consensus 389 a~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH--------------------- 447 (1674)
T KOG0951|consen 389 APLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH--------------------- 447 (1674)
T ss_pred cccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh---------------------
Confidence 3 22333332111000 011222222222222 335568999999998
Q ss_pred cccCCCCCCCCCCCCccccccCCCCCCCcccccccccCC---CCCceEEEEcCCC-ChHHHHhhhCCCc--eEEecC--c
Q 014085 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRK---FAPLKLIIMSASL-DARGFSEYFGCAK--AVHVQG--R 221 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~lSAT~-~~~~l~~~~~~~~--~~~~~~--~ 221 (431)
|+...||+..+.+..+..++. ....+++++|||+ |-++++.|+...+ .+.++. +
T Consensus 448 ------------------LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syR 509 (1674)
T KOG0951|consen 448 ------------------LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYR 509 (1674)
T ss_pred ------------------hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccC
Confidence 333344444444433333221 2578999999999 9999999886443 444433 4
Q ss_pred eeeeeEeeecCCCcchHHH---HHHHHHHH-hhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhc-----------------
Q 014085 222 QFPVEILYTLYPEPDYLDA---TLITIFQV-HLDEAPGDILVFLTGQEEIESVERLVQERLLQ----------------- 280 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~----------------- 280 (431)
+.|+++.+......+...+ +-...++. ......+++||||.||+++-+.|+.+++.+-.
T Consensus 510 pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~ei 589 (1674)
T KOG0951|consen 510 PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREI 589 (1674)
T ss_pred cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhh
Confidence 4566666666555443333 22333433 34445678999999999999999999865420
Q ss_pred --------C---CcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCC
Q 014085 281 --------L---PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPV 349 (431)
Q Consensus 281 --------~---~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~ 349 (431)
. ..++..+.++.+|+||+..+|..++..|++|.++|+|+|-+++||||+|+-+++|- .+..||+.
T Consensus 590 lrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pe 665 (1674)
T KOG0951|consen 590 LRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPE 665 (1674)
T ss_pred hhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcc
Confidence 0 12345678899999999999999999999999999999999999999999888883 68889998
Q ss_pred CCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 350 KGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 350 ~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
.+.- .+.++.+.+||.|||||.+
T Consensus 666 kg~w----~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 666 KGRW----TELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred cCcc----ccCCHHHHHHHHhhcCCCc
Confidence 8876 3899999999999999988
No 81
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2.5e-27 Score=239.87 Aligned_cols=293 Identities=16% Similarity=0.164 Sum_probs=180.8
Q ss_pred hccCChHHHHHHHHHHHhC-C--CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc
Q 014085 10 RKSLPIASVEKRLVEEVRK-N--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE 86 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~-g--~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~ 86 (431)
+..+.+++||++++..+.. | +..++++|||+|||.+....+... ++.++|++|+..++.|..+.+.++....
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 3456789999999999874 3 368999999999996654444433 2457888899999999999888876433
Q ss_pred cCCeEeEeEeec--------CCCChhHhHH----------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 87 LGQRVGYSIRFD--------DRTSTSTRIK----------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 87 ~~~~~~~~~~~~--------~~~~~~~~~~----------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
......+..... ..+.+...+. ..+..-....++++|+||||... +..+..++..+
T Consensus 326 ~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp--A~~fr~il~~l---- 399 (732)
T TIGR00603 326 DSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP--AAMFRRVLTIV---- 399 (732)
T ss_pred CceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc--HHHHHHHHHhc----
Confidence 222111111100 0011111111 01111112468999999999643 22232222221
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHH---HHhhhCCCceEEec----
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARG---FSEYFGCAKAVHVQ---- 219 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~---l~~~~~~~~~~~~~---- 219 (431)
.....++||||+ +.+. +..++| +.++..+
T Consensus 400 -----------------------------------------~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eL 437 (732)
T TIGR00603 400 -----------------------------------------QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMEL 437 (732)
T ss_pred -----------------------------------------CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHH
Confidence 122469999999 2222 222333 3332222
Q ss_pred ---CceeeeeE--eeecCCCcc---hH--------------HHHHHH---HHHHhhcCCCCcEEEEcCCHHHHHHHHHHH
Q 014085 220 ---GRQFPVEI--LYTLYPEPD---YL--------------DATLIT---IFQVHLDEAPGDILVFLTGQEEIESVERLV 274 (431)
Q Consensus 220 ---~~~~~~~~--~~~~~~~~~---~~--------------~~~~~~---~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l 274 (431)
+..-+++. .+...+... |+ ..++.. +...+. ..+.++||||.+..+++.++..|
T Consensus 438 i~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L 516 (732)
T TIGR00603 438 QKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKL 516 (732)
T ss_pred HhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHc
Confidence 21122221 111111100 00 011112 222222 34678999999999988888865
Q ss_pred HHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcEEEEecCccccccccCCcEEEEeCccccceeecCCCCce
Q 014085 275 QERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGME 353 (431)
Q Consensus 275 ~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~ 353 (431)
+ +..+||++++.+|..+++.|++| .+++||+|+++++|+|+|++++||+ +++.
T Consensus 517 ------------~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~---- 570 (732)
T TIGR00603 517 ------------G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSH---- 570 (732)
T ss_pred ------------C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCC----
Confidence 2 34579999999999999999865 8899999999999999999999998 5521
Q ss_pred eeeeeecCHHHHHHhhcccCCCC-CcEE-------EEeeChh
Q 014085 354 SLLVVPISKAQALQRSGRAGREG-PGKC-------FRLYPEN 387 (431)
Q Consensus 354 ~~~~~p~s~~~~~qr~GR~gR~~-~G~~-------~~l~~~~ 387 (431)
..|..+|+||+||++|.+ .|.+ |.|++++
T Consensus 571 -----~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 571 -----YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred -----CCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 248899999999999998 4444 7777654
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=4.9e-28 Score=259.80 Aligned_cols=300 Identities=16% Similarity=0.155 Sum_probs=184.3
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
...+.++++|.++++.+..|++++++||||||||+++..++... ..++.+++++.|++.++.|+.+.+..+... .+.
T Consensus 76 ~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l--~~~g~~alIL~PTreLa~Qi~~~l~~l~~~-~~~ 152 (1176)
T PRK09401 76 KTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYL--AKKGKKSYIIFPTRLLVEQVVEKLEKFGEK-VGC 152 (1176)
T ss_pred hcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHHHHHhhh-cCc
Confidence 44568999999999999999999999999999995322222111 223667999999999999999988776542 222
Q ss_pred eEeEeEe--------------------ecCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhc
Q 014085 90 RVGYSIR--------------------FDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (431)
Q Consensus 90 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~ 149 (431)
.+..... .+..+.++.++...+..-...+++++|+||||....++
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~--------------- 217 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSS--------------- 217 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcc---------------
Confidence 2211110 11112333444333332223569999999998322110
Q ss_pred cccCCCCCCCCCCCCcccccc-CCCC-CCCccccccc----------------cc----CCCCCceEEEEcCCCChHHHH
Q 014085 150 KSADGHSNGNNNNENSDMILD-RGND-TNGINTLKQC----------------QG----RKFAPLKLIIMSASLDARGFS 207 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~~~~~~~~----------------~~----~~~~~~~~v~lSAT~~~~~l~ 207 (431)
.+.|.++. .||. ..+..++..+ .. ....+.+++++|||++++.+.
T Consensus 218 -------------k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~ 284 (1176)
T PRK09401 218 -------------KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNR 284 (1176)
T ss_pred -------------cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchH
Confidence 01111222 2332 1111111111 11 011267899999999765433
Q ss_pred -hhhCCCceEEecCce---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH---HHHHHHHHHHHHhc
Q 014085 208 -EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE---IESVERLVQERLLQ 280 (431)
Q Consensus 208 -~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~---~~~l~~~l~~~~~~ 280 (431)
.++.+.-.+.+.... ..+...|.... +..+. +....... +.++||||+|++. |++++..|.+.
T Consensus 285 ~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~--~k~~~----L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~--- 354 (1176)
T PRK09401 285 VKLFRELLGFEVGSPVFYLRNIVDSYIVDE--DSVEK----LVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL--- 354 (1176)
T ss_pred HHHhhccceEEecCcccccCCceEEEEEcc--cHHHH----HHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---
Confidence 233332223333221 22333333222 22222 22222222 3579999999777 99999999987
Q ss_pred CCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEe----cCccccccccCC-cEEEEeCccccceeecCCCCceee
Q 014085 281 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVKGMESL 355 (431)
Q Consensus 281 ~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLva----T~~~~~Gvdip~-v~~VI~~~~~~~~~~d~~~~~~~~ 355 (431)
|+.+..+||+| ++ .++.|++|+.+|||| ||+++||+|+|+ |++||++|+.+-+.
T Consensus 355 ------gi~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~---------- 413 (1176)
T PRK09401 355 ------GINAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF---------- 413 (1176)
T ss_pred ------CCcEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE----------
Confidence 99999999999 22 349999999999999 699999999999 89999966544221
Q ss_pred eeeecCHHHHHHhhcccC
Q 014085 356 LVVPISKAQALQRSGRAG 373 (431)
Q Consensus 356 ~~~p~s~~~~~qr~GR~g 373 (431)
.......+.||.||+-
T Consensus 414 --~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 414 --SLEEELAPPFLLLRLL 429 (1176)
T ss_pred --eccccccCHHHHHHHH
Confidence 1124466899999985
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=1.7e-26 Score=240.18 Aligned_cols=294 Identities=18% Similarity=0.146 Sum_probs=175.3
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc-----
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE----- 86 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~----- 86 (431)
.+.++|+|+.+......+..++|.||||+|||..+..++...........+++..|+..++.++++++.++....
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 567899999886544456789999999999995543333322122234579999999999999999876533211
Q ss_pred cCCeEeEeEe---ec-----C--C---CChhHhHHHHhc--------cc-------------------CCCC----CcEE
Q 014085 87 LGQRVGYSIR---FD-----D--R---TSTSTRIKEALL--------DP-------------------YLSR----YSAI 122 (431)
Q Consensus 87 ~~~~~~~~~~---~~-----~--~---~~~~~~~~~~~~--------~~-------------------~~~~----~~~l 122 (431)
+....|...- +. . . .........++. .+ .+.. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 1111111100 00 0 0 000000001110 00 0111 3589
Q ss_pred EEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCC
Q 014085 123 IVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD 202 (431)
Q Consensus 123 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~ 202 (431)
||||+|..+.++..++.-+-+.+.. ...++|+||||++
T Consensus 444 IiDEVHAyD~ym~~lL~~~L~~l~~------------------------------------------~g~~vIllSATLP 481 (878)
T PRK09694 444 IVDEVHAYDAYMYGLLEAVLKAQAQ------------------------------------------AGGSVILLSATLP 481 (878)
T ss_pred EEechhhCCHHHHHHHHHHHHHHHh------------------------------------------cCCcEEEEeCCCC
Confidence 9999998887766544433222222 3457999999996
Q ss_pred hHHHHhhh---CCC---------ceEEecC----ce-----------eeeeEeeecC--CCcchHHHHHHHHHHHhhcCC
Q 014085 203 ARGFSEYF---GCA---------KAVHVQG----RQ-----------FPVEILYTLY--PEPDYLDATLITIFQVHLDEA 253 (431)
Q Consensus 203 ~~~l~~~~---~~~---------~~~~~~~----~~-----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 253 (431)
.....+++ +.. +.+.... .. .+..+..... .........+..+.+.. ..
T Consensus 482 ~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~ 559 (878)
T PRK09694 482 ATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NA 559 (878)
T ss_pred HHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hc
Confidence 55443332 211 1111000 00 0011111111 11111123333343333 23
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh----hhhCcC-CCCC---cEEEEecCcccc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM----RVFAPA-AAGF---RKVILATNIAET 325 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~----~i~~~f-~~g~---~~vLvaT~~~~~ 325 (431)
++++||||||++.|+++++.|.+... ....+..+||+++..+|. ++++.| ++|+ .+|||||+++|+
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~ 633 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQ 633 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhh
Confidence 67899999999999999999987521 136789999999999994 566677 6665 479999999999
Q ss_pred ccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 326 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 326 Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
|+|| +++++|. ...+.+.++||+||+||.+
T Consensus 634 GLDI-d~DvlIt--------------------dlaPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 634 SLDL-DFDWLIT--------------------QLCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred eeec-CCCeEEE--------------------CCCCHHHHHHHHhccCCCC
Confidence 9999 6899885 1234678999999999987
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=2e-27 Score=232.93 Aligned_cols=300 Identities=18% Similarity=0.200 Sum_probs=209.5
Q ss_pred hhccCChHHHHHHHHHHHhCCC------EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 9 QRKSLPIASVEKRLVEEVRKND------ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~------~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
...+|+++..|++++..+..+- +=+++|.-|||||..+...+...- ..|..+.++.||..++.|.+..+.++
T Consensus 257 ~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai--~~G~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 257 AALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI--EAGYQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred HhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH--HcCCeeEEeccHHHHHHHHHHHHHHH
Confidence 3567889999999999988652 348999999999944433333221 12557888899999999999998888
Q ss_pred hCCccCCeEeEeEeecCCCChhHhHH--------------HHhc-ccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
+.. .+..+++..+..........+. .++. .-.+.++.++|+||=|...+.....
T Consensus 335 l~~-~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~QR~~---------- 403 (677)
T COG1200 335 LEP-LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVHQRLA---------- 403 (677)
T ss_pred hhh-cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHHHHHH----------
Confidence 763 3344444332211111111111 1111 1347899999999999433322211
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCC-CceEEEEcCCCChHHHH-hhhCCCceEEecCce---
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFA-PLKLIIMSASLDARGFS-EYFGCAKAVHVQGRQ--- 222 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~lSAT~~~~~l~-~~~~~~~~~~~~~~~--- 222 (431)
+.... . .+..++||||+-|+.++ ..+++-.+..++.-+
T Consensus 404 ---------------------------------L~~KG----~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GR 446 (677)
T COG1200 404 ---------------------------------LREKG----EQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGR 446 (677)
T ss_pred ---------------------------------HHHhC----CCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCC
Confidence 11111 2 45789999999888888 788877666665433
Q ss_pred eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH--------HHHHHHHHHHHHhcCCcCCCceEEEEcC
Q 014085 223 FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE--------IESVERLVQERLLQLPEASRKLVTVPIF 294 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~--------~~~l~~~l~~~~~~~~~~~~~~~v~~lh 294 (431)
.|+......... .......+.+.+. ++.++.|.||-.++ |++++..|... .+++.+..+|
T Consensus 447 kpI~T~~i~~~~---~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-------~~~~~vgL~H 514 (677)
T COG1200 447 KPITTVVIPHER---RPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSF-------LPELKVGLVH 514 (677)
T ss_pred CceEEEEecccc---HHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHH-------cccceeEEEe
Confidence 456666554333 3333334444443 47789999997654 44555555543 4588899999
Q ss_pred CCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCC
Q 014085 295 SSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR 374 (431)
Q Consensus 295 g~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR 374 (431)
|.|+.+++.++++.|++|+++|||||.++|-|||+|+.+++|. +|+. -.-.++..|-+||+||
T Consensus 515 Grm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AE---------RFGLaQLHQLRGRVGR 577 (677)
T COG1200 515 GRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAE---------RFGLAQLHQLRGRVGR 577 (677)
T ss_pred cCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echh---------hhhHHHHHHhccccCC
Confidence 9999999999999999999999999999999999999999997 5543 3455779999999999
Q ss_pred CC-CcEEEEeeChh
Q 014085 375 EG-PGKCFRLYPEN 387 (431)
Q Consensus 375 ~~-~G~~~~l~~~~ 387 (431)
.+ ++.|+.++.+.
T Consensus 578 G~~qSyC~Ll~~~~ 591 (677)
T COG1200 578 GDLQSYCVLLYKPP 591 (677)
T ss_pred CCcceEEEEEeCCC
Confidence 99 99999999754
No 85
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=3e-27 Score=258.84 Aligned_cols=326 Identities=16% Similarity=0.132 Sum_probs=193.3
Q ss_pred HHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCC
Q 014085 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~ 85 (431)
+.+...++.++++|+++++.+..|++++++||||||||++...+.... ..++.+++++.|+++++.|+.+.+..+...
T Consensus 71 ~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~ 148 (1638)
T PRK14701 71 FFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESFCEK 148 (1638)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHHHhh
Confidence 333334568999999999999999999999999999996322222111 123567999999999999999988765432
Q ss_pred c-cCCeEeEeEeec------------------CCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 86 E-LGQRVGYSIRFD------------------DRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 86 ~-~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
. .+..+.+..+.. ....++..+...+......+++++|+||||+.-.+
T Consensus 149 ~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~------------- 215 (1638)
T PRK14701 149 ANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKA------------- 215 (1638)
T ss_pred cCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecccc-------------
Confidence 1 111111111000 00111111111111111256899999999953221
Q ss_pred hhccccCCCCCCCCCCCCcccccc-CCCCCCCcc----c------------------ccccccCCCCCce-EEEEcCCCC
Q 014085 147 ARSKSADGHSNGNNNNENSDMILD-RGNDTNGIN----T------------------LKQCQGRKFAPLK-LIIMSASLD 202 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~----~------------------~~~~~~~~~~~~~-~v~lSAT~~ 202 (431)
|.+.|.+++ .+|..++.. + +.......+...+ ++++|||++
T Consensus 216 ---------------~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~ 280 (1638)
T PRK14701 216 ---------------SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGK 280 (1638)
T ss_pred ---------------ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCC
Confidence 222233333 344333321 0 1111112223334 677999996
Q ss_pred hH-HHHhhhCCCceEEecCcee---eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH---HHHHHHHHH
Q 014085 203 AR-GFSEYFGCAKAVHVQGRQF---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE---IESVERLVQ 275 (431)
Q Consensus 203 ~~-~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~---~~~l~~~l~ 275 (431)
++ ....++.+.-.+.+..... .+...|... ..+... .+....... +.++||||+|++. |++++..|.
T Consensus 281 ~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~-~~~~k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~ 354 (1638)
T PRK14701 281 AKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNP-EKIIKE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLL 354 (1638)
T ss_pred chhHHHHHhhcCeEEEecCCCCCCCCcEEEEEEC-CHHHHH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHH
Confidence 53 4556665544455443322 233333221 111111 222322222 4579999999875 589999999
Q ss_pred HHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEec----CccccccccCC-cEEEEeCccccce---e-e
Q 014085 276 ERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT----NIAETSVTIPG-IKYVIDPGFVKAR---L-Y 346 (431)
Q Consensus 276 ~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT----~~~~~Gvdip~-v~~VI~~~~~~~~---~-~ 346 (431)
+. |+.+..+||+ |..+++.|++|+.+||||| ++++||+|+|+ |++||++|+.+-+ . |
T Consensus 355 ~~---------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~ 420 (1638)
T PRK14701 355 ED---------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLE 420 (1638)
T ss_pred HC---------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhc
Confidence 87 9999999995 8899999999999999999 58999999999 9999996665421 0 1
Q ss_pred cCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 347 DPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 347 d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
...... + ......+++.||+||.| ++.++..+..+
T Consensus 421 ~~~~~~--~----~~~~~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 421 DPTIYR--I----LGLLSEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred ccchhh--h----hcchHHHHHhhhhcccCCcchhHHHhHHH
Confidence 100000 0 00123456679999999 77776444443
No 86
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.7e-26 Score=226.55 Aligned_cols=164 Identities=20% Similarity=0.204 Sum_probs=115.2
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeeeEe---eecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEIL---YTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEI 267 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~ 267 (431)
++.+||||. ..+++.++++-. ++.++......... +......+....+...+.... ..+.++||||+|++.+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~-vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~--~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLP-VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH--AQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCC-eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHH
Confidence 678999999 344566666644 33333221111111 111112222233222222211 2356799999999999
Q ss_pred HHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccC---CcE-----EEEeCc
Q 014085 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIK-----YVIDPG 339 (431)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip---~v~-----~VI~~~ 339 (431)
+.++..|.+. ++.+..+||++...++..+. ++.+...|+||||+++||+||+ +|. +||+
T Consensus 487 e~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~--~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~-- 553 (656)
T PRK12898 487 ERLSALLREA---------GLPHQVLNAKQDAEEAAIVA--RAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL-- 553 (656)
T ss_pred HHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHH--HcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE--
Confidence 9999999987 99999999997665555544 4444557999999999999999 676 9999
Q ss_pred cccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 340 ~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
|| .|.+...|.||+|||||.| +|.++.+++.+|
T Consensus 554 ------~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 554 ------TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred ------cC----------CCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 66 5899999999999999999 999999998664
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=3.7e-26 Score=225.05 Aligned_cols=287 Identities=17% Similarity=0.190 Sum_probs=188.3
Q ss_pred hhccCChHHHHHHHHHHHhC----CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 9 QRKSLPIASVEKRLVEEVRK----NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~----g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
....+.++++|++++.++.. ++..++++|||+|||.+....+.... ..++|+.|++.++.|..+.+.....
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHhcC
Confidence 45566799999999999998 89999999999999977777766653 2388999999999999887777666
Q ss_pred Cc--cCCeEeEeEeecC---CCChhHhHHH--HhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCC
Q 014085 85 VE--LGQRVGYSIRFDD---RTSTSTRIKE--ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (431)
Q Consensus 85 ~~--~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (431)
.. .+...|....... ...+.+.+.. .+......++++||+||||+....+.. .+....
T Consensus 106 ~~~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~------------- 170 (442)
T COG1061 106 LNDEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELL------------- 170 (442)
T ss_pred CccccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhh-------------
Confidence 53 2222221111111 1111111111 223333347999999999965543322 111111
Q ss_pred CCCCCCCccccccCCCCCCCcccccccccCCCCCce-EEEEcCCC---ChHHHH---hhhCCCceEEec-------Ccee
Q 014085 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLK-LIIMSASL---DARGFS---EYFGCAKAVHVQ-------GRQF 223 (431)
Q Consensus 158 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~lSAT~---~~~~l~---~~~~~~~~~~~~-------~~~~ 223 (431)
.... +++||||+ +..... ..+| ..++... +...
T Consensus 171 --------------------------------~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~La 217 (442)
T COG1061 171 --------------------------------SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLA 217 (442)
T ss_pred --------------------------------hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCcc
Confidence 1223 89999998 322333 2332 2222222 2222
Q ss_pred eeeEeeecCCC-----------cchH-----------------------HHHHHHHHHHhhcC-CCCcEEEEcCCHHHHH
Q 014085 224 PVEILYTLYPE-----------PDYL-----------------------DATLITIFQVHLDE-APGDILVFLTGQEEIE 268 (431)
Q Consensus 224 ~~~~~~~~~~~-----------~~~~-----------------------~~~~~~~~~~~~~~-~~~~~lVF~~s~~~~~ 268 (431)
|.......... .... +..+..+....... ...+++||+.++.+++
T Consensus 218 p~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~ 297 (442)
T COG1061 218 PYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAY 297 (442)
T ss_pred ceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHH
Confidence 22222111100 0000 00111111112111 3568999999999999
Q ss_pred HHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecC
Q 014085 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (431)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~ 348 (431)
+++..+... +. +..++|.++..+|..+++.|+.|.+++||++.++.+|+|+|+++++|.
T Consensus 298 ~i~~~~~~~---------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----------- 356 (442)
T COG1061 298 EIAKLFLAP---------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----------- 356 (442)
T ss_pred HHHHHhcCC---------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE-----------
Confidence 999998764 55 788999999999999999999999999999999999999999999994
Q ss_pred CCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 349 VKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
.+...|...|+||+||.-|..
T Consensus 357 -------~~~t~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 357 -------LRPTGSRRLFIQRLGRGLRPA 377 (442)
T ss_pred -------eCCCCcHHHHHHHhhhhccCC
Confidence 335789999999999999944
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.95 E-value=6.4e-26 Score=233.94 Aligned_cols=311 Identities=19% Similarity=0.166 Sum_probs=193.7
Q ss_pred ccCChHHHHHHHHHHHhCC---CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 11 KSLPIASVEKRLVEEVRKN---DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g---~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
..+.+++.|++++..+.++ +++++.||||||||.+...++.... ..++.++++.|++.++.|+.+++.+.++..+
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l--~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v 218 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVL--AQGKQALVLVPEIALTPQMLARFRARFGAPV 218 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCE
Confidence 3456889999999999874 7899999999999954433333221 1256799999999999999999887665332
Q ss_pred CCeEeEeEeecCCCChhHhHHHH---hcc-------------cCCCCCcEEEEecCCcCccchHHHHHH-HHHHHHhhcc
Q 014085 88 GQRVGYSIRFDDRTSTSTRIKEA---LLD-------------PYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSK 150 (431)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~lViDEah~~~~~~~~~~~~-~~~~~~~~~~ 150 (431)
... .+..+...+...+ ... ..+.+++++|+||+|......+....+ .+.....|
T Consensus 219 ~~~-------~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~r-- 289 (679)
T PRK05580 219 AVL-------HSGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVR-- 289 (679)
T ss_pred EEE-------ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHH--
Confidence 111 1122222222111 100 126789999999999544332211000 00100000
Q ss_pred ccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhh-CCCceEEecCcee---eee
Q 014085 151 SADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQF---PVE 226 (431)
Q Consensus 151 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~-~~~~~~~~~~~~~---~~~ 226 (431)
....+.+++++|||++.+.+.... |....+....+.. ...
T Consensus 290 ------------------------------------a~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~ 333 (679)
T PRK05580 290 ------------------------------------AKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPE 333 (679)
T ss_pred ------------------------------------hhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCe
Confidence 111567999999999888877543 2333333333321 111
Q ss_pred EeeecCCC-------cchHHHHHHHHHHHhhcCCCCcEEEEcCCHH----------------------------------
Q 014085 227 ILYTLYPE-------PDYLDATLITIFQVHLDEAPGDILVFLTGQE---------------------------------- 265 (431)
Q Consensus 227 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~---------------------------------- 265 (431)
+....... ......++..+.+.+ ..+.++|||+|++.
T Consensus 334 v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 411 (679)
T PRK05580 334 VEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRC 411 (679)
T ss_pred EEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEEC
Confidence 21111100 011122333333333 22567999988632
Q ss_pred --------------------------HHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCH--HHHhhhhCcCCCCCcEEE
Q 014085 266 --------------------------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPS--EQQMRVFAPAAAGFRKVI 317 (431)
Q Consensus 266 --------------------------~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~--~~r~~i~~~f~~g~~~vL 317 (431)
.++.+++.|.+. .++.++..+|+++++ ++++.+++.|++|+.+||
T Consensus 412 h~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~-------fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~IL 484 (679)
T PRK05580 412 HHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL-------FPEARILRIDRDTTRRKGALEQLLAQFARGEADIL 484 (679)
T ss_pred CCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh-------CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEE
Confidence 445555555554 347789999999974 578999999999999999
Q ss_pred EecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 318 LATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 318 vaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
|+|+++++|+|+|+|++|+... .|...+..++.......+.|+|++||+||.+ .|.++..
T Consensus 485 VgT~~iakG~d~p~v~lV~il~------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 485 IGTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred EEChhhccCCCCCCcCEEEEEc------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 9999999999999999996411 4433333333333456788999999999988 8998854
No 89
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1e-26 Score=232.83 Aligned_cols=319 Identities=20% Similarity=0.210 Sum_probs=210.7
Q ss_pred ChHHHHHHHH--HHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 14 PIASVEKRLV--EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 14 ~~~~~Q~~~~--~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
..+.+|.+++ +.+++++|.+..+||++|||.....+++........ .++++.|-...+++-...+..+.. ..|..+
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr-~~llilp~vsiv~Ek~~~l~~~~~-~~G~~v 300 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR-NVLLILPYVSIVQEKISALSPFSI-DLGFPV 300 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh-ceeEecceeehhHHHHhhhhhhcc-ccCCcc
Confidence 4667888774 567799999999999999996666666555443333 344555555555444443333322 222221
Q ss_pred -eEeEeec---------CCCChhHh----HHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCC
Q 014085 92 -GYSIRFD---------DRTSTSTR----IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (431)
Q Consensus 92 -~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (431)
+|..... ....+-++ +..++....+..++++|+||.|
T Consensus 301 e~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh----------------------------- 351 (1008)
T KOG0950|consen 301 EEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH----------------------------- 351 (1008)
T ss_pred hhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee-----------------------------
Confidence 1110000 00011111 1244445667889999999998
Q ss_pred CCCCCCCccccccCCCCCCCccccccccc-CCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeEeeecCCCc
Q 014085 158 GNNNNENSDMILDRGNDTNGINTLKQCQG-RKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEP 235 (431)
Q Consensus 158 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (431)
|++|.++|...+..+.++.- ......++|+||||+ |...+++|+... ++..+.++.++..+. .+..
T Consensus 352 ---------mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~-~y~t~fRPv~L~E~i--k~G~ 419 (1008)
T KOG0950|consen 352 ---------MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAF-VYTTRFRPVPLKEYI--KPGS 419 (1008)
T ss_pred ---------eeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhh-heecccCcccchhcc--CCCc
Confidence 99999999998888877653 222346899999999 999999999733 222223333333332 2221
Q ss_pred ch----HHHHHHHHHH---H-h-------------hc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcC------------
Q 014085 236 DY----LDATLITIFQ---V-H-------------LD-EAPGDILVFLTGQEEIESVERLVQERLLQL------------ 281 (431)
Q Consensus 236 ~~----~~~~~~~~~~---~-~-------------~~-~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~------------ 281 (431)
.. ....+..+.+ . . .. .++.++||||++++.|+.+|..+....++.
T Consensus 420 ~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~ 499 (1008)
T KOG0950|consen 420 LIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWEL 499 (1008)
T ss_pred ccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHH
Confidence 11 1111222221 0 0 01 124459999999999999997776655411
Q ss_pred -----------------CcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccce
Q 014085 282 -----------------PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKAR 344 (431)
Q Consensus 282 -----------------~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~ 344 (431)
......+.+.++|+|++.++|+.++..|++|.+.|++||++++.|+|.|+.+++|-.-+
T Consensus 500 ~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~---- 575 (1008)
T KOG0950|consen 500 LSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY---- 575 (1008)
T ss_pred HHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc----
Confidence 01133457888999999999999999999999999999999999999999999995322
Q ss_pred eecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChhhh
Q 014085 345 LYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (431)
Q Consensus 345 ~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~~ 389 (431)
......+..+|.||+|||||.| -|.++.++.+.+.
T Consensus 576 ----------~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 576 ----------VGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred ----------cccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 2224788999999999999998 6899999987654
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.4e-25 Score=223.50 Aligned_cols=293 Identities=19% Similarity=0.159 Sum_probs=179.1
Q ss_pred EEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHh-
Q 014085 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEAL- 111 (431)
Q Consensus 33 vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 111 (431)
++.||||||||.+...++.... ..++.++++.|+..++.|+.+++.+.++..+.. ..+..+...+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l--~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~v-------lhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL--ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAV-------LHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEE-------EECCCCHHHHHHHHHH
Confidence 4689999999955433332221 235679999999999999999988776543211 122223322222111
Q ss_pred --c-------------ccCCCCCcEEEEecCCcCccchHHHHHH-HHHHHHhhccccCCCCCCCCCCCCccccccCCCCC
Q 014085 112 --L-------------DPYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 175 (431)
Q Consensus 112 --~-------------~~~~~~~~~lViDEah~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 175 (431)
. -..+.++++||+||+|+...+.+....+ .+.+...+
T Consensus 72 ~~~g~~~IVVGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r--------------------------- 124 (505)
T TIGR00595 72 VKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR--------------------------- 124 (505)
T ss_pred HHcCCCCEEECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHH---------------------------
Confidence 0 0136789999999999655443221110 00000000
Q ss_pred CCcccccccccCCCCCceEEEEcCCCChHHHHhhhCC-CceEEecCce---eeeeEeeecCCC----cchHHHHHHHHHH
Q 014085 176 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQGRQ---FPVEILYTLYPE----PDYLDATLITIFQ 247 (431)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~ 247 (431)
....+.++|++|||+..+.+.....+ ...+....+. ....+....... ......++..+.+
T Consensus 125 -----------a~~~~~~vil~SATPsles~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~ 193 (505)
T TIGR00595 125 -----------AKKFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQ 193 (505)
T ss_pred -----------HHhcCCCEEEEeCCCCHHHHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHH
Confidence 00156789999999988887765432 2222332211 111222211111 1112233344444
Q ss_pred HhhcCCCCcEEEEcCCHHH------------------------------------------------------------H
Q 014085 248 VHLDEAPGDILVFLTGQEE------------------------------------------------------------I 267 (431)
Q Consensus 248 ~~~~~~~~~~lVF~~s~~~------------------------------------------------------------~ 267 (431)
.+. .++++|||+|++.- +
T Consensus 194 ~l~--~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gt 271 (505)
T TIGR00595 194 TLA--AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGT 271 (505)
T ss_pred HHH--cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccH
Confidence 433 25689999887642 4
Q ss_pred HHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHH--hhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCcccccee
Q 014085 268 ESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ--MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARL 345 (431)
Q Consensus 268 ~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r--~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~ 345 (431)
+.+.+.|.+.+ ++.++..+|++++..++ +.+++.|++|+.+|||+|+++++|+|+|+|++|+-.+
T Consensus 272 e~~~e~l~~~f-------p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------ 338 (505)
T TIGR00595 272 EQVEEELAKLF-------PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ 338 (505)
T ss_pred HHHHHHHHhhC-------CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------
Confidence 56666666653 47889999999988766 8999999999999999999999999999999886311
Q ss_pred ecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE-eeChh
Q 014085 346 YDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR-LYPEN 387 (431)
Q Consensus 346 ~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~-l~~~~ 387 (431)
+|...+..++.....+...|+|++||+||.+ .|.++. .++++
T Consensus 339 aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 339 ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 4543333333333456788999999999988 898773 44443
No 91
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=1.6e-24 Score=219.53 Aligned_cols=160 Identities=23% Similarity=0.308 Sum_probs=116.8
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeee------EeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVE------ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ 264 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~ 264 (431)
++.+||.|. ..+++.+.++ ..++.++... |.. ..|.. ..+.....+..+...+ ..+.++||||+|+
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~-l~v~~IPt~k-p~~r~d~~d~i~~~--~~~K~~ai~~~i~~~~--~~~~pvLIft~s~ 434 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYS-LSVVKIPTNK-PIIRIDYPDKIYAT--LPEKLMATLEDVKEYH--ETGQPVLLITGSV 434 (762)
T ss_pred hhcccCCCChhHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEEC--HHHHHHHHHHHHHHHh--hCCCCEEEEECcH
Confidence 678899998 3344555554 3344444221 111 11111 1122222333333222 3467899999999
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccC---------CcEEE
Q 014085 265 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---------GIKYV 335 (431)
Q Consensus 265 ~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip---------~v~~V 335 (431)
+.++.++..|.+. ++++..+||++.+.++..+.+.++.| .|+||||+++||+||+ ++.+|
T Consensus 435 ~~se~ls~~L~~~---------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 435 EMSEIYSELLLRE---------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred HHHHHHHHHHHHC---------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEE
Confidence 9999999999987 99999999999999998888888777 7999999999999999 99999
Q ss_pred EeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 336 IDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 336 I~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
++ |+ .|....+ .||+|||||.| +|.++.+++.++
T Consensus 504 it--------~~----------~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 504 GT--------ER----------MENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred Ee--------cC----------CCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 98 66 3555555 99999999999 999999998654
No 92
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.3e-24 Score=222.21 Aligned_cols=107 Identities=23% Similarity=0.316 Sum_probs=98.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcccccccc---
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI--- 329 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdi--- 329 (431)
.+.++||||+|++.++.++..|.+. ++.+..+||++.+.++..+...++.| +|+|||++++||+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~ 495 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLG 495 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcc
Confidence 4778999999999999999999987 99999999999999998888888766 799999999999999
Q ss_pred CCcE-----EEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 330 PGIK-----YVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 330 p~v~-----~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
|+|. +||+ || .|.+...|+||+|||||.| +|.++.+++.+|
T Consensus 496 ~~V~~~GGL~VI~--------~d----------~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 496 EGVHELGGLAVIG--------TE----------RMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred cccccccCcEEEe--------cc----------CCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 7998 9999 65 5899999999999999999 999999998654
No 93
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.93 E-value=7.3e-26 Score=223.79 Aligned_cols=375 Identities=37% Similarity=0.571 Sum_probs=305.2
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---CcEEEEeCchhHHHHHHhHHHHH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---GKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.+..++..++...+-+++...+...+.++|-+.||+|||+.+...++....... -..+++..|++..+..+.++++.
T Consensus 369 ~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~ 448 (1282)
T KOG0921|consen 369 KITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVAN 448 (1282)
T ss_pred hhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHH
Confidence 456677888999999999999999999999999999999998888877554332 23678889999999999999999
Q ss_pred HhCCccCCeEeEeEeecCCCChhHhHH---------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcccc
Q 014085 82 ESGVELGQRVGYSIRFDDRTSTSTRIK---------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 152 (431)
..+..++..+|+..++++..+...... .++ ..-+..+.++++||.|+++..+++++.+++..+...
T Consensus 449 er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~-e~glrg~sh~i~deiherdv~~dfll~~lr~m~~ty---- 523 (1282)
T KOG0921|consen 449 ERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMM-ENGLRGISHVIIDEIHERDVDTDFVLIVLREMISTY---- 523 (1282)
T ss_pred hhHHhhcccccccccccccccccccceeeeccchhhhhh-hhcccccccccchhhhhhccchHHHHHHHHhhhccc----
Confidence 888899999999988887776655433 222 234567899999999999999999999999877654
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecC
Q 014085 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (431)
Q Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (431)
++.+.+++|||+|.+.+..+|+..+.+.+.++.+|++.++...
T Consensus 524 -------------------------------------~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led 566 (1282)
T KOG0921|consen 524 -------------------------------------RDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLED 566 (1282)
T ss_pred -------------------------------------hhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHH
Confidence 6788899999999999999998888777777666664333221
Q ss_pred ----------------------CC----------------cch----------------HHHHHHHHHHHhhcC-CCCcE
Q 014085 233 ----------------------PE----------------PDY----------------LDATLITIFQVHLDE-APGDI 257 (431)
Q Consensus 233 ----------------------~~----------------~~~----------------~~~~~~~~~~~~~~~-~~~~~ 257 (431)
.. +.+ .-.+...+....... -.+-+
T Consensus 567 ~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gai 646 (1282)
T KOG0921|consen 567 IIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAV 646 (1282)
T ss_pred hhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccce
Confidence 00 000 011122222222221 24569
Q ss_pred EEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEe
Q 014085 258 LVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVID 337 (431)
Q Consensus 258 lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~ 337 (431)
+||.+-......|..++... ........+.+..+|+..+..++..+.+....|..+++++|.+++..+.+.++..||+
T Consensus 647 lvflpgwa~i~~L~~~ll~~--~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid 724 (1282)
T KOG0921|consen 647 LVFLPGWAEIMTLCNRLLEH--QEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVID 724 (1282)
T ss_pred eeecCchHHhhhhhhhhhhh--hhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEe
Confidence 99999999999999888765 2344455788999999999999999999999999999999999999999999999999
Q ss_pred CccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcCcCCCCCceeccCchHHHHHHHHcCC
Q 014085 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGV 417 (431)
Q Consensus 338 ~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~~ 417 (431)
.+.++.+.|...++.......+.|.-...||.||+||..+|.|+++.+.-.++.+.....+++.+.++....+..|-+.+
T Consensus 725 ~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l 804 (1282)
T KOG0921|consen 725 SCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRL 804 (1282)
T ss_pred eeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888887777
Q ss_pred CCCccc
Q 014085 418 DDIIGF 423 (431)
Q Consensus 418 ~~~~~~ 423 (431)
..|..|
T Consensus 805 ~SI~~f 810 (1282)
T KOG0921|consen 805 GSIGEF 810 (1282)
T ss_pred hhHHHH
Confidence 666655
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=4.2e-25 Score=237.60 Aligned_cols=284 Identities=19% Similarity=0.225 Sum_probs=170.8
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc-c
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE-L 87 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~-~ 87 (431)
....+.++++|+.+++.+..|++++++||||||||+++..++.. . ..++.+++++.|++.++.|+.+.+..+.... .
T Consensus 73 ~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~-l-~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i 150 (1171)
T TIGR01054 73 KAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLF-L-AKKGKRCYIILPTTLLVIQVAEKISSLAEKAGV 150 (1171)
T ss_pred HhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH-H-HhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567899999999999999999999999999999533222211 1 2235679999999999999998887765421 1
Q ss_pred CC-eEeEe-Ee-----------------ecCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 88 GQ-RVGYS-IR-----------------FDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 88 ~~-~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
.. .++.. .. .+..+.++.++...+.. ...+++++|+||||..-..+
T Consensus 151 ~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~-l~~~~~~iVvDEaD~~L~~~-------------- 215 (1171)
T TIGR01054 151 GTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE-LGPKFDFIFVDDVDALLKAS-------------- 215 (1171)
T ss_pred ceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-hcCCCCEEEEeChHhhhhcc--------------
Confidence 11 01100 00 01112223333222221 11279999999998422111
Q ss_pred ccccCCCCCCCCCCCCcccccc-CCCCCC-Ccccc------------------cccccCCCCC--ceEEEEcCCCChHHH
Q 014085 149 SKSADGHSNGNNNNENSDMILD-RGNDTN-GINTL------------------KQCQGRKFAP--LKLIIMSASLDARGF 206 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~-~~~~~------------------~~~~~~~~~~--~~~v~lSAT~~~~~l 206 (431)
.+.|+++. .||..+ ++.++ .......+.+ ..++++|||..+...
T Consensus 216 --------------k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~ 281 (1171)
T TIGR01054 216 --------------KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGK 281 (1171)
T ss_pred --------------ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcccc
Confidence 00111111 222221 11111 0111111122 236778999633333
Q ss_pred H-hhhCCCceEEecCce---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCH---HHHHHHHHHHHHHHh
Q 014085 207 S-EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ---EEIESVERLVQERLL 279 (431)
Q Consensus 207 ~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~---~~~~~l~~~l~~~~~ 279 (431)
. .++.+.-.+.+.... ..+...+.... +.... +....... +.++||||+|+ +.|++++..|.+.
T Consensus 282 ~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~--~~~~~----L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~-- 352 (1171)
T TIGR01054 282 RAKLFRELLGFEVGGGSDTLRNVVDVYVEDE--DLKET----LLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH-- 352 (1171)
T ss_pred HHHHcccccceEecCccccccceEEEEEecc--cHHHH----HHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC--
Confidence 3 344433333443322 22333333211 11222 22222222 45799999999 9999999999887
Q ss_pred cCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEe----cCccccccccCC-cEEEEeCccccc
Q 014085 280 QLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKA 343 (431)
Q Consensus 280 ~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLva----T~~~~~Gvdip~-v~~VI~~~~~~~ 343 (431)
|+.+..+||++++ .+++.|++|+++|||| |++++||+|+|+ |++||++|+.+-
T Consensus 353 -------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 353 -------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred -------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 9999999999973 6789999999999999 599999999999 899999776553
No 95
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.93 E-value=4.3e-25 Score=200.10 Aligned_cols=303 Identities=19% Similarity=0.239 Sum_probs=198.8
Q ss_pred hHHHhhccC-ChHHHHHHHHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 5 KILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 5 ~~~~~~~~~-~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
++++..+.+ ..+|+|.+++.....|++++++.|||.||| +.+|.+... |- .+++.|...+...+.-++..
T Consensus 84 ~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad------g~-alvi~plislmedqil~lkq 156 (695)
T KOG0353|consen 84 DILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD------GF-ALVICPLISLMEDQILQLKQ 156 (695)
T ss_pred HHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC------Cc-eEeechhHHHHHHHHHHHHH
Confidence 344433333 457999999999999999999999999999 556655444 33 55556666655444333322
Q ss_pred HhCCcc---CCeEe-------------EeEeecCCCChhHhHH---HHhcc----cCCCCCcEEEEecCCcCccchHHH-
Q 014085 82 ESGVEL---GQRVG-------------YSIRFDDRTSTSTRIK---EALLD----PYLSRYSAIIVDEAHERTVHTDVL- 137 (431)
Q Consensus 82 ~~~~~~---~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~lViDEah~~~~~~~~~- 137 (431)
.+... +...+ -...+.....+++++. .++.. -....+.++-+||+|+.+.|...+
T Consensus 157 -lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr 235 (695)
T KOG0353|consen 157 -LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFR 235 (695)
T ss_pred -hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccC
Confidence 22210 00000 0000000111122221 11111 124568999999999877665433
Q ss_pred -----HHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHH---Hhh
Q 014085 138 -----LGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGF---SEY 209 (431)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l---~~~ 209 (431)
++++++.. ++..++++|||.....+ .+.
T Consensus 236 ~dy~~l~ilkrqf--------------------------------------------~~~~iigltatatn~vl~d~k~i 271 (695)
T KOG0353|consen 236 PDYKALGILKRQF--------------------------------------------KGAPIIGLTATATNHVLDDAKDI 271 (695)
T ss_pred cchHHHHHHHHhC--------------------------------------------CCCceeeeehhhhcchhhHHHHH
Confidence 33333321 78899999999844433 344
Q ss_pred hCCCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCce
Q 014085 210 FGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL 288 (431)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 288 (431)
+.....+.+.........+|.....+...+.-+..+..... ...+...||||-|++.|+.++..|.+. |+
T Consensus 272 l~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~---------gi 342 (695)
T KOG0353|consen 272 LCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH---------GI 342 (695)
T ss_pred HhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc---------Cc
Confidence 44333333333323333344333333333333333333332 233556899999999999999999998 99
Q ss_pred EEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHH-
Q 014085 289 VTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQ- 367 (431)
Q Consensus 289 ~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~q- 367 (431)
.+..||..|.+++|..+.+.+-.|++.|+|||-++++|+|-|+|+.||+-. .|.|.+.|.|
T Consensus 343 ~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs------------------l~ksienyyqa 404 (695)
T KOG0353|consen 343 HAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS------------------LPKSIENYYQA 404 (695)
T ss_pred cccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc------------------cchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999844 4888899999
Q ss_pred ------------------------------------------hhcccCCCC-CcEEEEeeCh
Q 014085 368 ------------------------------------------RSGRAGREG-PGKCFRLYPE 386 (431)
Q Consensus 368 ------------------------------------------r~GR~gR~~-~G~~~~l~~~ 386 (431)
..||+||.+ +..|+..|--
T Consensus 405 sarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 405 SARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred HHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 789999999 8889888753
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=7.5e-24 Score=218.84 Aligned_cols=304 Identities=22% Similarity=0.269 Sum_probs=219.8
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhC----CC--EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRK----ND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~----g~--~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~ 77 (431)
.+.-...++|.-++=|..++..+.+ ++ +=+|||--|-|||-++...+...-. +|+.|.+++||..+++|.++
T Consensus 584 q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--~GKQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 584 QEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--DGKQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--CCCeEEEEcccHHhHHHHHH
Confidence 3344456777788888888888774 44 4599999999999666555544433 36789999999999999999
Q ss_pred HHHHHhCCccCCeEeEeEeecCCCChhHhHH--------------HHhc-ccCCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 78 RVAEESGVELGQRVGYSIRFDDRTSTSTRIK--------------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
.+.+.+. .+...++...++.........+. ++++ +-.+.+++++||||-|...+.--..
T Consensus 662 tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEk----- 735 (1139)
T COG1197 662 TFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEK----- 735 (1139)
T ss_pred HHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCccHHHH-----
Confidence 9877665 34555665555544333333222 2222 2347899999999998544443333
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH-hhhC--CCceEEec
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFG--CAKAVHVQ 219 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~-~~~~--~~~~~~~~ 219 (431)
+..+. .++.++-|||||-|+.+. ...| +-.++..+
T Consensus 736 --------------------------------------LK~Lr----~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP 773 (1139)
T COG1197 736 --------------------------------------LKELR----ANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP 773 (1139)
T ss_pred --------------------------------------HHHHh----ccCcEEEeeCCCCcchHHHHHhcchhhhhccCC
Confidence 33332 677899999999888777 3443 33344433
Q ss_pred -CceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCC
Q 014085 220 -GRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 298 (431)
Q Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~ 298 (431)
....|++.+..+....-..+....++ .-+|++...+|.++..+.++..|++..+ ..++.+-||.|+
T Consensus 774 P~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQvfYv~NrV~~Ie~~~~~L~~LVP-------EarI~vaHGQM~ 840 (1139)
T COG1197 774 PEDRLPVKTFVSEYDDLLIREAILREL------LRGGQVFYVHNRVESIEKKAERLRELVP-------EARIAVAHGQMR 840 (1139)
T ss_pred CCCCcceEEEEecCChHHHHHHHHHHH------hcCCEEEEEecchhhHHHHHHHHHHhCC-------ceEEEEeecCCC
Confidence 33467777765544322222222222 2278999999999999999999999854 778999999999
Q ss_pred HHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-C
Q 014085 299 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P 377 (431)
Q Consensus 299 ~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~ 377 (431)
..+-+.++..|.+|+.+|||||.++|.|+|||+++.+|- -+. --.-.++..|.+||+||.. .
T Consensus 841 e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~A---------D~fGLsQLyQLRGRVGRS~~~ 903 (1139)
T COG1197 841 ERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERA---------DKFGLAQLYQLRGRVGRSNKQ 903 (1139)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecc---------ccccHHHHHHhccccCCccce
Confidence 999999999999999999999999999999999999995 221 1345577999999999999 9
Q ss_pred cEEEEeeChh
Q 014085 378 GKCFRLYPEN 387 (431)
Q Consensus 378 G~~~~l~~~~ 387 (431)
|.||.+|.+.
T Consensus 904 AYAYfl~p~~ 913 (1139)
T COG1197 904 AYAYFLYPPQ 913 (1139)
T ss_pred EEEEEeecCc
Confidence 9999999754
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.3e-23 Score=188.60 Aligned_cols=296 Identities=17% Similarity=0.233 Sum_probs=191.2
Q ss_pred ChHHHHHHHHH----HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC-CccC
Q 014085 14 PIASVEKRLVE----EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG-VELG 88 (431)
Q Consensus 14 ~~~~~Q~~~~~----~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~-~~~~ 88 (431)
.+++.|+.+.. .+.+.++.++.|-||||||.++-..+.... .+|.++.+..|+...+.+.+.++...+. ....
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al--~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~ 174 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL--NQGGRVCIASPRVDVCLELYPRLKQAFSNCDID 174 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH--hcCCeEEEecCcccchHHHHHHHHHhhccCCee
Confidence 45677876544 455778999999999999955433332221 2366899999999999999998876665 3322
Q ss_pred CeEeEeEee---cCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCc
Q 014085 89 QRVGYSIRF---DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENS 165 (431)
Q Consensus 89 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (431)
...|-+... .-.+.+.-++.+ +-+.+|++|+||++..+...+..+.+.-+-...
T Consensus 175 ~Lyg~S~~~fr~plvVaTtHQLlr-----Fk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark------------------ 231 (441)
T COG4098 175 LLYGDSDSYFRAPLVVATTHQLLR-----FKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK------------------ 231 (441)
T ss_pred eEecCCchhccccEEEEehHHHHH-----HHhhccEEEEeccccccccCCHHHHHHHHHhhc------------------
Confidence 222211110 001112222222 334599999999998888877766654333221
Q ss_pred cccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhh-CCCceEEecCce----eeeeEeeecCCCcchH--
Q 014085 166 DMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQ----FPVEILYTLYPEPDYL-- 238 (431)
Q Consensus 166 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-- 238 (431)
.....|.+|||+..+-..+.. ++...+.++.+. .|+..+.-..+-...+
T Consensus 232 ------------------------~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r 287 (441)
T COG4098 232 ------------------------KEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR 287 (441)
T ss_pred ------------------------ccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhh
Confidence 455689999998554444444 233344554432 2222221111111111
Q ss_pred ---HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcE
Q 014085 239 ---DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 315 (431)
Q Consensus 239 ---~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~ 315 (431)
..++...++.. ...+.|++||+|+.+..+.++..|++.++ ...+...|+. ...|.+.++.|++|+.+
T Consensus 288 ~kl~~kl~~~lekq-~~~~~P~liF~p~I~~~eq~a~~lk~~~~-------~~~i~~Vhs~--d~~R~EkV~~fR~G~~~ 357 (441)
T COG4098 288 NKLPLKLKRWLEKQ-RKTGRPVLIFFPEIETMEQVAAALKKKLP-------KETIASVHSE--DQHRKEKVEAFRDGKIT 357 (441)
T ss_pred ccCCHHHHHHHHHH-HhcCCcEEEEecchHHHHHHHHHHHhhCC-------ccceeeeecc--CccHHHHHHHHHcCceE
Confidence 11222222222 23367899999999999999999977643 4556677875 45799999999999999
Q ss_pred EEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEee
Q 014085 316 VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLY 384 (431)
Q Consensus 316 vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~ 384 (431)
+||+|.++|||+.+|+|++.+ .++.. .-.|.+..+|.+||+||.- .|.++.|.
T Consensus 358 lLiTTTILERGVTfp~vdV~V---------lgaeh-------~vfTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 358 LLITTTILERGVTFPNVDVFV---------LGAEH-------RVFTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred EEEEeehhhcccccccceEEE---------ecCCc-------ccccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 999999999999999999998 43222 2357788999999999976 57766553
No 98
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=1.1e-23 Score=212.17 Aligned_cols=162 Identities=23% Similarity=0.273 Sum_probs=120.8
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeee-----eEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPV-----EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQE 265 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~ 265 (431)
++.+||.|. ..+++.+.++- +++.++...... ...|.. ..+.....+..+...+ ..+.|+||||+|++
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l-~vv~IPtnkp~~R~d~~d~i~~t--~~~k~~ai~~~i~~~~--~~grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNL-EVVVVPTNRPVIRKDLSDLVYKT--EEEKWKAVVDEIKERH--AKGQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCC-CEEEeCCCCCeeeeeCCCeEEcC--HHHHHHHHHHHHHHHH--hcCCCEEEEeCcHH
Confidence 577888888 33445555543 344444221111 111111 1222333333343333 34778999999999
Q ss_pred HHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCC-------cEEEEeC
Q 014085 266 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG-------IKYVIDP 338 (431)
Q Consensus 266 ~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~-------v~~VI~~ 338 (431)
.++.++..|.+. +++...+|++ +.+|+..+..|+.+...|+|||++++||.||+. ..+||+
T Consensus 417 ~se~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~- 484 (745)
T TIGR00963 417 KSELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIG- 484 (745)
T ss_pred HHHHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEe-
Confidence 999999999997 9999999998 889999999999999999999999999999988 559998
Q ss_pred ccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 339 GFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 339 ~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
|+ .|.|...+.||+||+||.| +|.+..+++.+|
T Consensus 485 -------t~----------~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 485 -------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred -------cC----------CCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 44 5899999999999999999 999999988653
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=3.2e-23 Score=221.69 Aligned_cols=113 Identities=20% Similarity=0.288 Sum_probs=90.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCc-EEEEecCccccccccCC
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR-KVILATNIAETSVTIPG 331 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~-~vLvaT~~~~~Gvdip~ 331 (431)
.++++||||.++++|+.+++.|.+.+........+..+..+||+.+ ++..+++.|+++.. +|+|+++++..|+|+|+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3579999999999999999999876533222223345667899875 46789999999876 79999999999999999
Q ss_pred cEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC--cE-EEEeeC
Q 014085 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP--GK-CFRLYP 385 (431)
Q Consensus 332 v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~--G~-~~~l~~ 385 (431)
+.+||. +. .+.|...|+||+||+.|..+ |+ .+.+++
T Consensus 775 v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 775 ICNLVF--------LR----------RVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccEEEE--------ec----------CCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999994 32 57899999999999999875 55 555554
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=3.5e-22 Score=209.39 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=95.8
Q ss_pred HHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC--CcEEEEecCc
Q 014085 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATNI 322 (431)
Q Consensus 245 ~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g--~~~vLvaT~~ 322 (431)
+.+.+......++||||+++..+..+++.|... .|+.+..+||+|++.+|..+++.|+++ ..+|||||++
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 334444445778999999999999999999542 189999999999999999999999974 6999999999
Q ss_pred cccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcE
Q 014085 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (431)
Q Consensus 323 ~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~ 379 (431)
+++|+|++.+++||+ || .|.++..|.||+||+||.| .|.
T Consensus 556 gseGlNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~ 595 (956)
T PRK04914 556 GSEGRNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHD 595 (956)
T ss_pred hccCCCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCce
Confidence 999999999999999 77 6999999999999999999 554
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=5.1e-22 Score=207.00 Aligned_cols=299 Identities=18% Similarity=0.140 Sum_probs=181.6
Q ss_pred ChHHHHHHHHHHHhC---CC-EEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 14 PIASVEKRLVEEVRK---ND-ILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~---g~-~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
+..+.|..+...... .. .+++.||||+|||.+...+...... .....+++.+.|.+.++.++.+++....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 456778877777664 34 7899999999999554444433222 22467899999999999999998877665432
Q ss_pred CCe---EeEeEe-ecCCC-----------------------ChhHhHHHHhcccCC------CCCcEEEEecCCcCccch
Q 014085 88 GQR---VGYSIR-FDDRT-----------------------STSTRIKEALLDPYL------SRYSAIIVDEAHERTVHT 134 (431)
Q Consensus 88 ~~~---~~~~~~-~~~~~-----------------------~~~~~~~~~~~~~~~------~~~~~lViDEah~~~~~~ 134 (431)
... .+.... ..... .+...+......+.- -..+.+|+||+|..+.++
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 111 111000 00000 000000010000000 125789999999877773
Q ss_pred --HHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH---hh
Q 014085 135 --DVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EY 209 (431)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~---~~ 209 (431)
..+..++..+.. .+.++|+||||+++.... ..
T Consensus 355 ~~~~l~~~i~~l~~-------------------------------------------~g~~ill~SATlP~~~~~~l~~~ 391 (733)
T COG1203 355 MLAALLALLEALAE-------------------------------------------AGVPVLLMSATLPPFLKEKLKKA 391 (733)
T ss_pred hHHHHHHHHHHHHh-------------------------------------------CCCCEEEEecCCCHHHHHHHHHH
Confidence 333333333322 467899999999554433 44
Q ss_pred hCCCceEEecCceeeeeEee-e-cCCCcchHHHH--HHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCC
Q 014085 210 FGCAKAVHVQGRQFPVEILY-T-LYPEPDYLDAT--LITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS 285 (431)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~ 285 (431)
++....+.......+..... . .....+..... ............+++++|.|||++.|.+++..|+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~-------- 463 (733)
T COG1203 392 LGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK-------- 463 (733)
T ss_pred HhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc--------
Confidence 43322222211100000000 0 00000111110 011111122344788999999999999999999986
Q ss_pred CceEEEEcCCCCCHHHHhhhhCcC----CCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecC
Q 014085 286 RKLVTVPIFSSLPSEQQMRVFAPA----AAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (431)
Q Consensus 286 ~~~~v~~lhg~~~~~~r~~i~~~f----~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s 361 (431)
+..+..+||.++..+|.+.++.+ +.+...|+|||++.|.|+|+ +.+++|- .+.+
T Consensus 464 -~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mIT--------------------e~aP 521 (733)
T COG1203 464 -GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLIT--------------------ELAP 521 (733)
T ss_pred -CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeee--------------------cCCC
Confidence 33799999999999999988754 45788999999999999999 5888883 5788
Q ss_pred HHHHHHhhcccCCCC---CcEEEEeeC
Q 014085 362 KAQALQRSGRAGREG---PGKCFRLYP 385 (431)
Q Consensus 362 ~~~~~qr~GR~gR~~---~G~~~~l~~ 385 (431)
.++.+||+||++|.| .|..+....
T Consensus 522 idSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 522 IDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred HHHHHHHHHHHhhcccccCCceeEeec
Confidence 999999999999999 455555543
No 102
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=9.3e-22 Score=196.73 Aligned_cols=328 Identities=18% Similarity=0.198 Sum_probs=207.6
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC-CccCCe-
Q 014085 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG-VELGQR- 90 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~-~~~~~~- 90 (431)
|.+..+|.+....+..++.++|+|||.+|||++.+..+-...+..+...++++.|+..++.|....+...+. ..+...
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 677789999999999999999999999999988777777766666777899999999999888777654442 111111
Q ss_pred --EeEeEeec--------CCCChhHhHHHHhcc-----cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCC
Q 014085 91 --VGYSIRFD--------DRTSTSTRIKEALLD-----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (431)
Q Consensus 91 --~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (431)
.|.-.+.. ..+..++.....+.. .+..++.++|+||+|.
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~-------------------------- 643 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHL-------------------------- 643 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhh--------------------------
Confidence 11000100 111223333344433 3577899999999993
Q ss_pred CCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhC--------CCceEEecCceeeee
Q 014085 156 SNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG--------CAKAVHVQGRQFPVE 226 (431)
Q Consensus 156 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~--------~~~~~~~~~~~~~~~ 226 (431)
++...-+--|+.++.. .++.++++|||+ |+..+..|+. +...+....+...+.
T Consensus 644 ------------iG~~ed~l~~Eqll~l------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~ 705 (1330)
T KOG0949|consen 644 ------------IGNEEDGLLWEQLLLL------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELG 705 (1330)
T ss_pred ------------ccccccchHHHHHHHh------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhc
Confidence 3333333333333333 356899999999 9999999974 111222111111110
Q ss_pred EeeecC----------------------------------------------------------C---------------
Q 014085 227 ILYTLY----------------------------------------------------------P--------------- 233 (431)
Q Consensus 227 ~~~~~~----------------------------------------------------------~--------------- 233 (431)
.+.... +
T Consensus 706 l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~ 785 (1330)
T KOG0949|consen 706 LVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVG 785 (1330)
T ss_pred ceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHH
Confidence 000000 0
Q ss_pred --------------------------------------------CcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHH
Q 014085 234 --------------------------------------------EPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIES 269 (431)
Q Consensus 234 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~ 269 (431)
..++....+-.++..+.+...-+.|+|--.+..|+.
T Consensus 786 e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcek 865 (1330)
T KOG0949|consen 786 EYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEK 865 (1330)
T ss_pred HHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHH
Confidence 000000001122222334446678999999999998
Q ss_pred HHHHHHHHHh--------------------------------------------------------------------cC
Q 014085 270 VERLVQERLL--------------------------------------------------------------------QL 281 (431)
Q Consensus 270 l~~~l~~~~~--------------------------------------------------------------------~~ 281 (431)
+|..+.+.++ ..
T Consensus 866 la~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~ 945 (1330)
T KOG0949|consen 866 LALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEE 945 (1330)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhh
Confidence 8876655442 00
Q ss_pred CcCCCc-----------eEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCC
Q 014085 282 PEASRK-----------LVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVK 350 (431)
Q Consensus 282 ~~~~~~-----------~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~ 350 (431)
.....| -.++.+|+||....|..++-.||.|...||+||.+++-|||+|+.++|.- -|
T Consensus 946 ~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------gD--- 1014 (1330)
T KOG0949|consen 946 ETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------GD--- 1014 (1330)
T ss_pred hccccCCCcHHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------cc---
Confidence 000000 14677899999999999999999999999999999999999998877774 22
Q ss_pred CceeeeeeecCHHHHHHhhcccCCCC---CcEEEEe-eChhhhhcCcCCCCCcee
Q 014085 351 GMESLLVVPISKAQALQRSGRAGREG---PGKCFRL-YPENEFDKLEDSTKPEIK 401 (431)
Q Consensus 351 ~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l-~~~~~~~~~~~~~~~~~~ 401 (431)
+ ...++-.|.|++|||||.| -|.++.+ ++.....++--...|.|.
T Consensus 1015 ---s---LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diq 1063 (1330)
T KOG0949|consen 1015 ---S---LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQ 1063 (1330)
T ss_pred ---c---cccCchhHHhhhccccccccccccceEEEeCcHHHHHHHHHHhhhccc
Confidence 1 2566777999999999999 5776655 444444443333344443
No 103
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=7.1e-22 Score=170.33 Aligned_cols=273 Identities=15% Similarity=0.163 Sum_probs=182.9
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc-cccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-FCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~-~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
.++--+..+|.++++...-|-+++-+|.+|.|||..+.+.-+... ...+...++++..+++++.|+.+.+..++.+...
T Consensus 60 cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 60 CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 444457789999999999999999999999999944333222222 2223446778888999999999988888887665
Q ss_pred CeEeEeEeecC--------------CCChhHhHHHHhccc--CCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcccc
Q 014085 89 QRVGYSIRFDD--------------RTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (431)
Q Consensus 89 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 152 (431)
..++.-.++.. ...++.++..+..+. .+.+++.+|+|||+ .++..+-.
T Consensus 140 vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcd----------kmle~lDM------ 203 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECD----------KMLEQLDM------ 203 (387)
T ss_pred ceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHH----------HHHHHHHH------
Confidence 55543332221 123444555444443 36789999999996 22222211
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH-hhhCCCceEEecCc----eeee
Q 014085 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS-EYFGCAKAVHVQGR----QFPV 225 (431)
Q Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~-~~~~~~~~~~~~~~----~~~~ 225 (431)
.+.+..+++..+...|++++|||+ +.+-++ +|+.++-.+.++.. .+.+
T Consensus 204 -------------------------rRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGL 258 (387)
T KOG0329|consen 204 -------------------------RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGL 258 (387)
T ss_pred -------------------------HHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhH
Confidence 122445555555778999999999 444444 56666555555533 2444
Q ss_pred eEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhh
Q 014085 226 EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRV 305 (431)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i 305 (431)
+.+|....+.+ .-..+.+.+....-.+++||+.|+....
T Consensus 259 qQ~YvkLke~e----KNrkl~dLLd~LeFNQVvIFvKsv~Rl~------------------------------------- 297 (387)
T KOG0329|consen 259 QQYYVKLKENE----KNRKLNDLLDVLEFNQVVIFVKSVQRLS------------------------------------- 297 (387)
T ss_pred HHHHHhhhhhh----hhhhhhhhhhhhhhcceeEeeehhhhhh-------------------------------------
Confidence 55544322211 1223333333344567999998877510
Q ss_pred hCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEee
Q 014085 306 FAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (431)
Q Consensus 306 ~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~ 384 (431)
| .-+ +|||+++.||+|+.-++.|+| || +|.+.++|+||.|||||.| .|.++.++
T Consensus 298 ---f---~kr-~vat~lfgrgmdiervNi~~N--------Yd----------mp~~~DtYlHrv~rAgrfGtkglaitfv 352 (387)
T KOG0329|consen 298 ---F---QKR-LVATDLFGRGMDIERVNIVFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 352 (387)
T ss_pred ---h---hhh-hHHhhhhccccCcccceeeec--------cC----------CCCCchHHHHHhhhhhccccccceeehh
Confidence 1 112 899999999999999999999 77 6899999999999999999 89999999
Q ss_pred Chhhh
Q 014085 385 PENEF 389 (431)
Q Consensus 385 ~~~~~ 389 (431)
+.+.-
T Consensus 353 s~e~d 357 (387)
T KOG0329|consen 353 SDEND 357 (387)
T ss_pred cchhh
Confidence 86643
No 104
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=8.1e-20 Score=186.65 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEE
Q 014085 237 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKV 316 (431)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~v 316 (431)
.++.++..+.... ..+.++||||+|++.++.+++.|.+. ++.+..+||++++.+|.++++.|++|+++|
T Consensus 427 qi~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~V 495 (655)
T TIGR00631 427 QVDDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDV 495 (655)
T ss_pred hHHHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceE
Confidence 3444454454433 33668999999999999999999987 899999999999999999999999999999
Q ss_pred EEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeCh
Q 014085 317 ILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPE 386 (431)
Q Consensus 317 LvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~ 386 (431)
||||+++++|+|+|++++||+ +|..... .|.+..+|+||+|||||...|+++.+++.
T Consensus 496 LV~t~~L~rGfDiP~v~lVvi--------~DadifG-----~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 496 LVGINLLREGLDLPEVSLVAI--------LDADKEG-----FLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred EEEcChhcCCeeeCCCcEEEE--------eCccccc-----CCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 999999999999999999998 5532211 37788999999999999999999999874
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5.9e-20 Score=187.04 Aligned_cols=164 Identities=22% Similarity=0.252 Sum_probs=119.9
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhh--cCCCCcEEEEcCCHHHHH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHL--DEAPGDILVFLTGQEEIE 268 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lVF~~s~~~~~ 268 (431)
++.+||.|. ..+++.+.++ .+++.++.. .|......+..-.......+..+.+... ...+.|+||||+|+..++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~-l~vv~IPtn-kp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se 454 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYN-MEVITIPTN-RPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSE 454 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhC-CCEEEcCCC-CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHH
Confidence 678999998 3344555554 334444432 1221111111000111222333333331 235788999999999999
Q ss_pred HHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcccccccc---CCcE-----EEEeCcc
Q 014085 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI---PGIK-----YVIDPGF 340 (431)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdi---p~v~-----~VI~~~~ 340 (431)
.++..|.+. +++...+|+++...++..+.+.++.|. |+|||++++||.|| ++|. +||+
T Consensus 455 ~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~--- 520 (796)
T PRK12906 455 RLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIG--- 520 (796)
T ss_pred HHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEe---
Confidence 999999997 899999999999888888888888777 99999999999999 4899 9998
Q ss_pred ccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 341 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 341 ~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
++ .|.+...+.|++|||||.| +|.+..+++.+
T Consensus 521 -----te----------~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 521 -----TE----------RHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred -----ee----------cCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 44 5899999999999999999 99999998866
No 106
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.83 E-value=4.1e-20 Score=175.57 Aligned_cols=276 Identities=22% Similarity=0.230 Sum_probs=181.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
..+.+.-+|||.||||+-+..-+... +..+++-|.+.++.++++++. ..+..+....|-..............
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a------ksGvycGPLrLLA~EV~~r~n-a~gipCdL~TGeE~~~~~~~~~~a~h 262 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA------KSGVYCGPLRLLAHEVYDRLN-ALGIPCDLLTGEERRFVLDNGNPAQH 262 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh------ccceecchHHHHHHHHHHHhh-hcCCCccccccceeeecCCCCCcccc
Confidence 34667789999999997654443333 457888999999999999864 34666666555443322111111111
Q ss_pred HHHhc--ccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccc
Q 014085 108 KEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ 185 (431)
Q Consensus 108 ~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 185 (431)
...-. -+.-..+++.|+||++ ||-|..||+.|.+.+-.+.
T Consensus 263 vScTVEM~sv~~~yeVAViDEIQ--------------------------------------mm~Dp~RGwAWTrALLGl~ 304 (700)
T KOG0953|consen 263 VSCTVEMVSVNTPYEVAVIDEIQ--------------------------------------MMRDPSRGWAWTRALLGLA 304 (700)
T ss_pred eEEEEEEeecCCceEEEEehhHH--------------------------------------hhcCcccchHHHHHHHhhh
Confidence 10000 0224569999999997 8999999999988776665
Q ss_pred cCCCCCceEEEEcCCC----ChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEc
Q 014085 186 GRKFAPLKLIIMSASL----DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFL 261 (431)
Q Consensus 186 ~~~~~~~~~v~lSAT~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~ 261 (431)
.. . |-+..-+ -++.+.+.-|+.-.++...+..|+.+. . .+...+.+..+|..+| |
T Consensus 305 Ad---E---iHLCGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~-----------~---~~~~sl~nlk~GDCvV-~ 363 (700)
T KOG0953|consen 305 AD---E---IHLCGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVE-----------E---TALGSLSNLKPGDCVV-A 363 (700)
T ss_pred hh---h---hhccCCchHHHHHHHHHhhcCCeeEEEeecccCcceeh-----------h---hhhhhhccCCCCCeEE-E
Confidence 31 1 2222222 223333333444333333333333332 1 2233334444565443 3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCC--CCcEEEEecCccccccccCCcEEEEeCc
Q 014085 262 TGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVIDPG 339 (431)
Q Consensus 262 ~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~--g~~~vLvaT~~~~~Gvdip~v~~VI~~~ 339 (431)
-|+++.-.+...+++. ++..+.+++|+++++.|.+--..|.+ ++.+||||||+++||+|+ +|+.||=+.
T Consensus 364 FSkk~I~~~k~kIE~~--------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~s 434 (700)
T KOG0953|consen 364 FSKKDIFTVKKKIEKA--------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYS 434 (700)
T ss_pred eehhhHHHHHHHHHHh--------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEee
Confidence 3899999999999987 13449999999999999999999976 899999999999999999 788888433
Q ss_pred cccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC----CcEEEEeeChh
Q 014085 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN 387 (431)
Q Consensus 340 ~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~----~G~~~~l~~~~ 387 (431)
+ ...++....+++..+..|-+|||||.| .|.+-++.+++
T Consensus 435 l---------~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 435 L---------IKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred c---------ccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 3 333334447999999999999999998 57777776543
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.5e-19 Score=183.21 Aligned_cols=313 Identities=18% Similarity=0.182 Sum_probs=206.9
Q ss_pred CChHHHHHHHHHHHhCC----CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 13 LPIASVEKRLVEEVRKN----DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g----~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
..+.+-|+.++..+.+. ...++.|.||||||-+...++.... .+|+.++++.|...+..|+..++...++..+.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L--~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL--AQGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH--HcCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 35678898888888766 6789999999999955444444332 24788999999999999999999888885543
Q ss_pred CeEeEeEeecCCCChhHhHHHHhcc----------------cCCCCCcEEEEecCCcCccchHHHHHHHHHHHH-hhccc
Q 014085 89 QRVGYSIRFDDRTSTSTRIKEALLD----------------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN-ARSKS 151 (431)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~-~~~~~ 151 (431)
.. .+..+..++...|..- .-+.++++||+||-|+.++..+.-..+-.+-++ .|+
T Consensus 275 vl-------HS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra-- 345 (730)
T COG1198 275 VL-------HSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRA-- 345 (730)
T ss_pred hh-------cccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHH--
Confidence 32 2334444444433311 127899999999999766555432221111111 110
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCC-CceEEecCcee---eeeE
Q 014085 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQGRQF---PVEI 227 (431)
Q Consensus 152 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~-~~~~~~~~~~~---~~~~ 227 (431)
...++++|+-|||+..+.+.....+ ...+....+.. +.++
T Consensus 346 ------------------------------------~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v 389 (730)
T COG1198 346 ------------------------------------KKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRV 389 (730)
T ss_pred ------------------------------------HHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcc
Confidence 0156789999999999988876543 33444443322 3333
Q ss_pred eeecCCC----cc--hHHHHHHHHHHHhhcCCCCcEEEEcCCHH------------------------------------
Q 014085 228 LYTLYPE----PD--YLDATLITIFQVHLDEAPGDILVFLTGQE------------------------------------ 265 (431)
Q Consensus 228 ~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~lVF~~s~~------------------------------------ 265 (431)
....... .+ +-..++..+...+.. +.++|+|+|.+-
T Consensus 390 ~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~--geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~ 467 (730)
T COG1198 390 EIIDMRKEPLETGRSLSPALLEAIRKTLER--GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHY 467 (730)
T ss_pred eEEeccccccccCccCCHHHHHHHHHHHhc--CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCC
Confidence 3222211 11 223344444444332 567888888763
Q ss_pred ------------------------HHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHH--HhhhhCcCCCCCcEEEEe
Q 014085 266 ------------------------EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ--QMRVFAPAAAGFRKVILA 319 (431)
Q Consensus 266 ------------------------~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~--r~~i~~~f~~g~~~vLva 319 (431)
.++.+.+.|.+.+ ++.++..+.++.+... -+..+..|.+|+.+|||.
T Consensus 468 Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F-------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiG 540 (730)
T COG1198 468 CGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF-------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIG 540 (730)
T ss_pred CCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC-------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeec
Confidence 4555566666553 4778888888877653 567789999999999999
Q ss_pred cCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE-eeChh
Q 014085 320 TNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR-LYPEN 387 (431)
Q Consensus 320 T~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~-l~~~~ 387 (431)
|++++.|.|+|+++.|.--+ -|..-+..+++....+...+.|-+|||||.+ +|.++. -+.++
T Consensus 541 TQmiaKG~~fp~vtLVgvl~------aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 541 TQMIAKGHDFPNVTLVGVLD------ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred chhhhcCCCcccceEEEEEe------chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 99999999999999987522 3444445556666788899999999999997 887544 45554
No 108
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.81 E-value=9.1e-20 Score=168.23 Aligned_cols=112 Identities=18% Similarity=0.320 Sum_probs=100.3
Q ss_pred hcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcccccccc
Q 014085 250 LDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTI 329 (431)
Q Consensus 250 ~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdi 329 (431)
+.....+.||||.|+..|+.|-+++++... ..+.++++||+.-+.||++.++.|+.+.++.|||||+++||+||
T Consensus 501 ~~h~mdkaiifcrtk~dcDnLer~~~qkgg------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi 574 (725)
T KOG0349|consen 501 RRHAMDKAIIFCRTKQDCDNLERMMNQKGG------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDI 574 (725)
T ss_pred hhhccCceEEEEeccccchHHHHHHHHcCC------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccc
Confidence 445577899999999999999999988743 36899999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeC
Q 014085 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (431)
Q Consensus 330 p~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~ 385 (431)
-.+-++||-- .|-+...|+||+||.||+. .|.++.++.
T Consensus 575 ~g~p~~invt------------------lpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 575 TGLPFMINVT------------------LPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred cCCceEEEEe------------------cCcccchhhhhhhccchhhhcceeEEEee
Confidence 9999999822 4778888999999999998 899988874
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.3e-18 Score=175.05 Aligned_cols=162 Identities=22% Similarity=0.219 Sum_probs=111.6
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeeeEeeecC----CCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~ 266 (431)
++.+||.|. ..+++.+.++ ..++.++... |....-.+. ...+....+...+...+ ..+.|+||||+|++.
T Consensus 367 kl~GmTGTa~te~~E~~~iY~-l~vv~IPtnk-p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~--~~grpVLIft~Si~~ 442 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYN-LDVVVIPTNR-PMIRIDHPDLIYKTEKEKFDAVVEDIKERH--KKGQPVLVGTVSIEK 442 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhC-CCEEEcCCCC-CeeeeeCCCeEEECHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 577888888 3334445544 3344444321 221111111 11222233333332222 346789999999999
Q ss_pred HHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCc--------------
Q 014085 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI-------------- 332 (431)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v-------------- 332 (431)
++.++..|.+. +++...+|+. +.+|+..+..|+.+...|+||||+++||+||+-=
T Consensus 443 se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~ 511 (830)
T PRK12904 443 SELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEE 511 (830)
T ss_pred HHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhh
Confidence 99999999987 9999999996 7899999999999999999999999999999521
Q ss_pred ------------------------EEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 333 ------------------------KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 333 ------------------------~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
=+||- +..+.|..-=-|-.||+||.| +|.+-.++|-+
T Consensus 512 ~~~~~~~~~~~~~~~~~~v~~~GGLhVig------------------TerhesrRid~QlrGRagRQGdpGss~f~lSle 573 (830)
T PRK12904 512 TEEQIAKIKAEWQEEHEEVLEAGGLHVIG------------------TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 573 (830)
T ss_pred hhHHHHHHHHHHhhhhhhHHHcCCCEEEe------------------cccCchHHHHHHhhcccccCCCCCceeEEEEcC
Confidence 13332 224677777799999999999 99987777644
No 110
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.1e-17 Score=158.85 Aligned_cols=168 Identities=18% Similarity=0.201 Sum_probs=129.3
Q ss_pred CceEEEEcCCCChHHHHhhhCCC--ceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHH
Q 014085 191 PLKLIIMSASLDARGFSEYFGCA--KAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIE 268 (431)
Q Consensus 191 ~~~~v~lSAT~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~ 268 (431)
..|+|+.|||+..-+++.--++. .+++..+- ....+ ...|....++.++..+...... +.++||-+-|++.|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGL-lDP~i--evRp~~~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmAE 460 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGL-LDPEI--EVRPTKGQVDDLLSEIRKRVAK--NERVLVTTLTKKMAE 460 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCC-CCCce--eeecCCCcHHHHHHHHHHHHhc--CCeEEEEeehHHHHH
Confidence 35899999999666665332211 12222221 11222 2234556677777777665543 578999999999999
Q ss_pred HHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecC
Q 014085 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (431)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~ 348 (431)
+|.++|.+. |+.+..+|+++..-||.++++..+.|..+|||.-+.+-+|+|+|.|..|-. .|.
T Consensus 461 dLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--------lDA 523 (663)
T COG0556 461 DLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDA 523 (663)
T ss_pred HHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE--------eec
Confidence 999999998 999999999999999999999999999999999999999999999999986 665
Q ss_pred CCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeC
Q 014085 349 VKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 385 (431)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~ 385 (431)
... + +.-|-.+.+|-+|||+|.-.|+++...+
T Consensus 524 DKe--G---FLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 524 DKE--G---FLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred Ccc--c---cccccchHHHHHHHHhhccCCeEEEEch
Confidence 432 1 2456677999999999999999987753
No 111
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.6e-17 Score=168.82 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=89.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCC
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG 331 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~ 331 (431)
..+.|+||||+|++.++.++..|.+. +++...+|+++.+.++..+.+.|++|. |+|||++++||.||.=
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~---------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~L 510 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKE---------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVL 510 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceec
Confidence 34778999999999999999999998 999999999999999999999999994 9999999999999841
Q ss_pred c---EE-EEeC--cc-----c---------cceeecCCCCc-eeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 332 I---KY-VIDP--GF-----V---------KARLYDPVKGM-ESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 332 v---~~-VI~~--~~-----~---------~~~~~d~~~~~-~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
- .. +.+. .- . +...-+ ..|. ...+..+.|..-=-|-.||+||.| +|.+-.++|-+
T Consensus 511 ggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSle 587 (896)
T PRK13104 511 GGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIA-AGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 587 (896)
T ss_pred CCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHH-cCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcC
Confidence 0 00 0000 00 0 000000 0111 112224566666689999999999 99877777644
No 112
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.76 E-value=1.4e-16 Score=159.16 Aligned_cols=292 Identities=14% Similarity=0.099 Sum_probs=171.8
Q ss_pred CChHHHHHHHHHHHh----CCC-EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 13 LPIASVEKRLVEEVR----KND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~----~g~-~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
..++.+|..++..+. .|+ -+++++.||+|||+.+..++.........++++++.-+..++.|....+..+.....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~ 243 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGT 243 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCcc
Confidence 356789988776665 444 489999999999977767776655555678999999999999998876655544321
Q ss_pred --CCeEeEeEe--ecCCCChhHhHHHHhcc-------cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCC
Q 014085 88 --GQRVGYSIR--FDDRTSTSTRIKEALLD-------PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 156 (431)
Q Consensus 88 --~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (431)
....+.... .....++...+...... .....+++||+||||.....-.. +++-.+-+.
T Consensus 244 ~~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~--~I~dYFdA~--------- 312 (875)
T COG4096 244 KMNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS--SILDYFDAA--------- 312 (875)
T ss_pred ceeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH--HHHHHHHHH---------
Confidence 111111100 11112222222211111 12445999999999942221111 333333222
Q ss_pred CCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHH--hhhCCCceEEec-------Cceeeee
Q 014085 157 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFS--EYFGCAKAVHVQ-------GRQFPVE 226 (431)
Q Consensus 157 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~--~~~~~~~~~~~~-------~~~~~~~ 226 (431)
.+++|||+ +..+.. .+|.+.|+...+ +-..|.+
T Consensus 313 -------------------------------------~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~ 355 (875)
T COG4096 313 -------------------------------------TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYK 355 (875)
T ss_pred -------------------------------------HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCC
Confidence 34558888 333333 455322221111 0001110
Q ss_pred Eeeec-----------------------C--C--------------CcchHHHHHHHHHHHhhc--C--CCCcEEEEcCC
Q 014085 227 ILYTL-----------------------Y--P--------------EPDYLDATLITIFQVHLD--E--APGDILVFLTG 263 (431)
Q Consensus 227 ~~~~~-----------------------~--~--------------~~~~~~~~~~~~~~~~~~--~--~~~~~lVF~~s 263 (431)
++-.. . . .....+.....+.+.+.. . ..+++||||.+
T Consensus 356 vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n 435 (875)
T COG4096 356 VIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKN 435 (875)
T ss_pred ceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeC
Confidence 00000 0 0 011122333444455444 1 15789999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcC--CCCCcEEEEecCccccccccCCcEEEEeCccc
Q 014085 264 QEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA--AAGFRKVILATNIAETSVTIPGIKYVIDPGFV 341 (431)
Q Consensus 264 ~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f--~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~ 341 (431)
..||+.+...|.+..++. .+--+..+.|+-.+.++. +..| ++.-.+|.|+.+++..|+|+|.|..++
T Consensus 436 ~dHAe~i~~~~~~~ype~----~~~~a~~IT~d~~~~q~~--Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV----- 504 (875)
T COG4096 436 HDHAERIREALVNEYPEY----NGRYAMKITGDAEQAQAL--IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV----- 504 (875)
T ss_pred cHHHHHHHHHHHHhCccc----cCceEEEEeccchhhHHH--HHHHHhcCCCCceEEehhhhhcCCCchheeeee-----
Confidence 999999999999875542 234466677765554332 3333 345578999999999999999998888
Q ss_pred cceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 342 KARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 342 ~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
|+. .-.|...|.||.||+-|..
T Consensus 505 ----F~r---------~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 505 ----FDR---------KVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ----ehh---------hhhhHHHHHHHhcCccccC
Confidence 542 3467888999999998875
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=8.8e-17 Score=166.24 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=76.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHH---------------------HHhhhhCcCCC-
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE---------------------QQMRVFAPAAA- 311 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~---------------------~r~~i~~~f~~- 311 (431)
+++.+|||.++.+|..+++.|.+..+.. .+.....++++...+ ....++++|++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~ 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEK----FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccc----cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC
Confidence 5889999999999999999998764321 123445555543322 22467888876
Q ss_pred CCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCC-CCcE
Q 014085 312 GFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE-GPGK 379 (431)
Q Consensus 312 g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~-~~G~ 379 (431)
+.++|||+++.+..|+|.|.+++++ .| .|.....++|.+||+.|. .+|+
T Consensus 590 ~~~~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 590 ENPKLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred CCceEEEEEcccccccCCCccceEE---------Ee----------ccccccHHHHHHHHhccccCCCC
Confidence 6889999999999999999999999 55 344445589999999994 4433
No 114
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.74 E-value=3e-17 Score=169.12 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEE
Q 014085 238 LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVI 317 (431)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vL 317 (431)
.+.++..+.... ..+.++||||+|++.++.+++.|.+. ++.+..+||++++.+|..+++.|++|++.|+
T Consensus 432 ~~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vl 500 (652)
T PRK05298 432 VDDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVL 500 (652)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEE
Confidence 344444444433 23678999999999999999999987 8999999999999999999999999999999
Q ss_pred EecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeC
Q 014085 318 LATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 385 (431)
Q Consensus 318 vaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~ 385 (431)
|||+++++|+|+|++++||+ +|.... -.|.+..+|+||+||+||...|+|+.+++
T Consensus 501 V~t~~L~rGfdlp~v~lVii--------~d~eif-----G~~~~~~~yiqr~GR~gR~~~G~~i~~~~ 555 (652)
T PRK05298 501 VGINLLREGLDIPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYAD 555 (652)
T ss_pred EEeCHHhCCccccCCcEEEE--------eCCccc-----ccCCCHHHHHHHhccccCCCCCEEEEEec
Confidence 99999999999999999998 553211 13678899999999999988999999987
No 115
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=1.5e-16 Score=130.92 Aligned_cols=104 Identities=27% Similarity=0.506 Sum_probs=95.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v 332 (431)
+.+++||||++.+.++.+++.|.+. +..+..+||+++..+|..+++.|+++..++|++|+++++|+|+|.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 4778999999999999999999874 7889999999999999999999999999999999999999999999
Q ss_pred EEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 333 KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 333 ~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
++||. ++ .+.+..+++|++||++|.| .|.|+.+
T Consensus 98 ~~vi~--------~~----------~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 98 SVVIN--------YD----------LPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CEEEE--------eC----------CCCCHHHheecccccccCCCCceEEeC
Confidence 99997 44 4888999999999999999 8877653
No 116
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.69 E-value=4.6e-15 Score=156.76 Aligned_cols=109 Identities=19% Similarity=0.193 Sum_probs=93.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC---CcEEEEecCcccccccc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG---FRKVILATNIAETSVTI 329 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g---~~~vLvaT~~~~~Gvdi 329 (431)
.+.++|||+......+.+.+.|... ++....+||+++.++|..+++.|.+. ..-+|++|.+.+.|+|+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 3568999999888888888888765 88899999999999999999999653 34679999999999999
Q ss_pred CCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCc---EEEEeeChhh
Q 014085 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG---KCFRLYPENE 388 (431)
Q Consensus 330 p~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G---~~~~l~~~~~ 388 (431)
..+++||. || .+.++....|+.||+.|.|+- .+|+|++...
T Consensus 557 t~Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 557 ATADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hhCCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 99999998 88 578888899999999999933 4778877653
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=2e-15 Score=154.63 Aligned_cols=106 Identities=23% Similarity=0.187 Sum_probs=89.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI 332 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v 332 (431)
.+.|+||||+|++.++.++..|.+. ++....+|+++++.++..+.+.|+.|. |+|||++++||.||.=-
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLg 516 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLG 516 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecC
Confidence 4778999999999999999999987 999999999999999999999999999 99999999999998410
Q ss_pred -------------------------------------EEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCC
Q 014085 333 -------------------------------------KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (431)
Q Consensus 333 -------------------------------------~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~ 375 (431)
=+||- +..+.|..-=-|-.||+||.
T Consensus 517 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIg------------------TerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 517 GNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILG------------------TERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred CchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEe------------------cccCchHHHHhhhhcccccC
Confidence 13442 22456666668999999999
Q ss_pred C-CcEEEEeeChh
Q 014085 376 G-PGKCFRLYPEN 387 (431)
Q Consensus 376 ~-~G~~~~l~~~~ 387 (431)
| +|.+-.++|-+
T Consensus 579 GDPGss~f~lSlE 591 (908)
T PRK13107 579 GDAGSSRFYLSME 591 (908)
T ss_pred CCCCceeEEEEeC
Confidence 9 99877777644
No 118
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=5.8e-17 Score=120.71 Aligned_cols=72 Identities=29% Similarity=0.473 Sum_probs=68.8
Q ss_pred ceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHH
Q 014085 287 KLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (431)
Q Consensus 287 ~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~ 366 (431)
++.+..+||+++.++|..+++.|+++..+|||||+++++|+|+|++++||. |+ .|.+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~----------~~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YD----------PPWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SS----------SESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cc----------cCCCHHHHH
Confidence 899999999999999999999999999999999999999999999999998 54 489999999
Q ss_pred HhhcccCCCC
Q 014085 367 QRSGRAGREG 376 (431)
Q Consensus 367 qr~GR~gR~~ 376 (431)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999986
No 119
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=2.7e-16 Score=149.97 Aligned_cols=174 Identities=20% Similarity=0.164 Sum_probs=124.7
Q ss_pred CCceEEEEcCCC-Ch-HHHHhhhCC--CceEEecCceeeeeEeeecCCC---------cchHHHHHHHHHHHhhcCCCCc
Q 014085 190 APLKLIIMSASL-DA-RGFSEYFGC--AKAVHVQGRQFPVEILYTLYPE---------PDYLDATLITIFQVHLDEAPGD 256 (431)
Q Consensus 190 ~~~~~v~lSAT~-~~-~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 256 (431)
.+.+++-.|||+ ++ +...+.++- ...+..++.+..-+......|. ..++......+.... .++-+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i--~~~~R 527 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMV--QHGLR 527 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHH--HcCCc
Confidence 456788889999 44 444466653 3467777776655555544432 112222222222332 23668
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEE
Q 014085 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 336 (431)
Q Consensus 257 ~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI 336 (431)
+|.||++++-|+-+-...++.+....+++ --.+..|.||...++|+.|+...=-|+..-+|||++++-|+||...+.|+
T Consensus 528 ~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl 606 (1034)
T KOG4150|consen 528 CIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL 606 (1034)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE
Confidence 99999999999988777666543322211 12356689999999999999988899999999999999999999999999
Q ss_pred eCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEee
Q 014085 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (431)
Q Consensus 337 ~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~ 384 (431)
+.|+ |.|.+.+.|.+|||||.. +..++.+.
T Consensus 607 ~~GF------------------P~S~aNl~QQ~GRAGRRNk~SLavyva 637 (1034)
T KOG4150|consen 607 HLGF------------------PGSIANLWQQAGRAGRRNKPSLAVYVA 637 (1034)
T ss_pred EccC------------------chhHHHHHHHhccccccCCCceEEEEE
Confidence 9884 999999999999999988 66544443
No 120
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=1.1e-15 Score=157.22 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=116.8
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhh--cCCCCcEEEEcCCHHHHH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHL--DEAPGDILVFLTGQEEIE 268 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lVF~~s~~~~~ 268 (431)
++-+||.|. ...++.+.++ ..++.++.. .|+...-....-..........+.+... ...+.|+||||+|++.++
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTn-rP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE 612 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK-LDVVVIPTN-KPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSE 612 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC-CcEEECCCC-CCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHH
Confidence 688999999 4444555554 233444322 1221111111000111222333333321 234778999999999999
Q ss_pred HHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccC---CcEEE-----EeCcc
Q 014085 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP---GIKYV-----IDPGF 340 (431)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip---~v~~V-----I~~~~ 340 (431)
.++..|.+. ++....+|+ .+.+|+..+..|+.+...|+|||++++||.||+ .|..| |+
T Consensus 613 ~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg--- 678 (1025)
T PRK12900 613 TLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG--- 678 (1025)
T ss_pred HHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC---
Confidence 999999997 899999997 588999999999999999999999999999998 45433 54
Q ss_pred ccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 341 VKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 341 ~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
++ .|.+...|.||+|||||.| +|.+..+++.+|
T Consensus 679 -----te----------rhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 679 -----SE----------RHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred -----CC----------CCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 22 5788889999999999999 999999998764
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.1e-14 Score=148.10 Aligned_cols=286 Identities=18% Similarity=0.232 Sum_probs=172.0
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
..+++++..|.--...+..|+...++||||.||||+...+..-. +.+|++++++.||..++.|..+++.++....-+.
T Consensus 78 ~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~--a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 78 ATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL--AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred hhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHH--HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 44568999999999999999999999999999996643333222 2346789999999999999999988776433211
Q ss_pred eEeEeEeecCCCChhHh------HH-----------HHhcc--cCC--CCCcEEEEecCCc---CccchHHHHHHHH---
Q 014085 90 RVGYSIRFDDRTSTSTR------IK-----------EALLD--PYL--SRYSAIIVDEAHE---RTVHTDVLLGLLK--- 142 (431)
Q Consensus 90 ~~~~~~~~~~~~~~~~~------~~-----------~~~~~--~~~--~~~~~lViDEah~---~~~~~~~~~~~~~--- 142 (431)
.+-+ ......+...+ +. .++.. ..+ .+++++++|.++. .+.+.|.++.++-
T Consensus 156 ~~~~--~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~e 233 (1187)
T COG1110 156 DVLV--VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSE 233 (1187)
T ss_pred ceee--eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCH
Confidence 1111 12222222222 11 11111 113 3699999999873 2234444444331
Q ss_pred -------HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCccccccc----ccCCCCCceEEEEcCCCChHH-----H
Q 014085 143 -------KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQC----QGRKFAPLKLIIMSASLDARG-----F 206 (431)
Q Consensus 143 -------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~lSAT~~~~~-----l 206 (431)
.+...+.+.. .......+.+.+... -.+.....++|+.|||..+.. +
T Consensus 234 E~i~~a~~~~~lr~~~~-----------------~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 234 EVIESAYELIKLRRKLY-----------------GEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred HHHHHHHHHHHHHHHhh-----------------hhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 1111110000 000000111111110 011225568999999994433 3
Q ss_pred HhhhCCCceEEecCce---eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCC---HHHHHHHHHHHHHHHhc
Q 014085 207 SEYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTG---QEEIESVERLVQERLLQ 280 (431)
Q Consensus 207 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s---~~~~~~l~~~l~~~~~~ 280 (431)
.++++ +.+.+.. ..+.-.|.. ..-.++....+... +...|||++. ++.+++++..|++.
T Consensus 297 ReLlg----FevG~~~~~LRNIvD~y~~---~~~~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~--- 361 (1187)
T COG1110 297 RELLG----FEVGSGGEGLRNIVDIYVE---SESLEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRSH--- 361 (1187)
T ss_pred HHHhC----CccCccchhhhheeeeecc---CccHHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhc---
Confidence 35553 1112111 111111221 13333333222222 4569999999 99999999999998
Q ss_pred CCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC----ccccccccC-CcEEEEeCcccc
Q 014085 281 LPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN----IAETSVTIP-GIKYVIDPGFVK 342 (431)
Q Consensus 281 ~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~----~~~~Gvdip-~v~~VI~~~~~~ 342 (431)
|+++..+|+. .+..++.|..|+++|||... ++-||+|+| -++++|=+|..+
T Consensus 362 ------Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 362 ------GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ------CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 9999999973 37789999999999999865 899999998 578999888774
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.63 E-value=5.4e-14 Score=150.02 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=108.2
Q ss_pred ceEEEEcCCCC----hHHHHhhhCCCc--eEEecCceee----eeEeee-cCC------CcchHHHHHHHHHHHhhcCCC
Q 014085 192 LKLIIMSASLD----ARGFSEYFGCAK--AVHVQGRQFP----VEILYT-LYP------EPDYLDATLITIFQVHLDEAP 254 (431)
Q Consensus 192 ~~~v~lSAT~~----~~~l~~~~~~~~--~~~~~~~~~~----~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~ 254 (431)
..+|++|||+. .+-+.+.+|-.. ...+...+++ ..++.- ..+ ..++.+.....+...... .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 47899999994 234556666322 1222111122 122211 111 123444444555554433 46
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcE-
Q 014085 255 GDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK- 333 (431)
Q Consensus 255 ~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~- 333 (431)
+++|||++|.+..+.++..|...... .++.+. ..+.. .+|..+++.|++++..||++|+.+.+|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 89999999999999999998763210 133333 23333 5788999999999999999999999999998655
Q ss_pred -EEEeCccccceeecC-------------CCCceeeeeeecCHHHHHHhhcccCCCC--CcEEEEe
Q 014085 334 -YVIDPGFVKARLYDP-------------VKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRL 383 (431)
Q Consensus 334 -~VI~~~~~~~~~~d~-------------~~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G~~~~l 383 (431)
+||-.++.-..--|+ .+.... -..|.....+.|.+||.-|.. .|..+.+
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~-~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYD-YVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHH-hhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 566555532110000 001111 112556677899999999988 4554444
No 123
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.62 E-value=4.2e-15 Score=128.13 Aligned_cols=117 Identities=20% Similarity=0.151 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeE
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSI 95 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 95 (431)
+|+|.+++..+.+|+++++.||||+|||+++..++.......+...++++.|++.++.+....+..+.............
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 58999999999999999999999999997766666554433333478999999999999999988877652111111110
Q ss_pred e--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCcc
Q 014085 96 R--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTV 132 (431)
Q Consensus 96 ~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~ 132 (431)
. .+....+...+...+.. ..+.+++++|+||+|....
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCccccccc
Confidence 0 00011122222233332 1345699999999996554
No 124
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.56 E-value=5e-14 Score=145.24 Aligned_cols=310 Identities=18% Similarity=0.122 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHh-CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEe
Q 014085 16 ASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYS 94 (431)
Q Consensus 16 ~~~Q~~~~~~~~-~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~ 94 (431)
.++|.+++..+. .++++++.+|+|||||.++..++.. .....+++++.|..+.+..+++.+.+.++...|..+--.
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l 1221 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL 1221 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEec
Confidence 567777777766 4678999999999999888777776 222446888889999998888877766655443332211
Q ss_pred Eee-----------cCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 014085 95 IRF-----------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNE 163 (431)
Q Consensus 95 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (431)
.+. ....+++.+...+ ...+.++++|.||.|
T Consensus 1222 ~ge~s~~lkl~~~~~vii~tpe~~d~l---q~iQ~v~l~i~d~lh----------------------------------- 1263 (1674)
T KOG0951|consen 1222 TGETSLDLKLLQKGQVIISTPEQWDLL---QSIQQVDLFIVDELH----------------------------------- 1263 (1674)
T ss_pred CCccccchHHhhhcceEEechhHHHHH---hhhhhcceEeeehhh-----------------------------------
Confidence 100 0111222222222 267889999999998
Q ss_pred CccccccCCCCCC---CcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEec--CceeeeeEeeecCCCcch
Q 014085 164 NSDMILDRGNDTN---GINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQ--GRQFPVEILYTLYPEPDY 237 (431)
Q Consensus 164 ~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 237 (431)
++. .-.++. +.. ++.+..+..++.+++.+|..+ |.+++.-+ ...-++++. .+..|............+
T Consensus 1264 ---~ig-g~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~ig~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~ 1337 (1674)
T KOG0951|consen 1264 ---LIG-GVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDLIGA-SSSGVFNFSPSVRPVPLEIHIQSVDISHF 1337 (1674)
T ss_pred ---hhc-ccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhhccc-cccceeecCcccCCCceeEEEEEeccchh
Confidence 333 222222 122 555666677889999999888 88887221 122233433 455566655555444433
Q ss_pred HHHHHH---HHHHHh--hcCCCCcEEEEcCCHHHHHHHHHHHHHHHhc---------------CCcCCCceEEEEcCCCC
Q 014085 238 LDATLI---TIFQVH--LDEAPGDILVFLTGQEEIESVERLVQERLLQ---------------LPEASRKLVTVPIFSSL 297 (431)
Q Consensus 238 ~~~~~~---~~~~~~--~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~---------------~~~~~~~~~v~~lhg~~ 297 (431)
...... ..+... -...+++.+||+|++++|..++..+-..+-. .........|. |-+|
T Consensus 1338 ~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~ 1415 (1674)
T KOG0951|consen 1338 ESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGL 1415 (1674)
T ss_pred HHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--cccc
Confidence 333221 111111 1234778999999999999998776554310 01112222333 8899
Q ss_pred CHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC
Q 014085 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (431)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~ 377 (431)
+.....-+-..|..|.+.|+|...- .+|+-..+--+|+ ..+..||...... .+.+.++.+|+.|+|.| .
T Consensus 1416 s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv----mgt~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~ 1484 (1674)
T KOG0951|consen 1416 SSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV----MGTQYYDGKEHSY----EDYPIAELLQMVGLASG--A 1484 (1674)
T ss_pred CcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE----ecceeeccccccc----ccCchhHHHHHhhhhcC--C
Confidence 9999999999999999999998877 8999886533443 2577799877665 48899999999999988 7
Q ss_pred cEEEEeeC
Q 014085 378 GKCFRLYP 385 (431)
Q Consensus 378 G~~~~l~~ 385 (431)
|+|+.+..
T Consensus 1485 ~k~vi~~~ 1492 (1674)
T KOG0951|consen 1485 GKCVIMCH 1492 (1674)
T ss_pred ccEEEEec
Confidence 88888865
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=6.8e-14 Score=132.01 Aligned_cols=277 Identities=17% Similarity=0.183 Sum_probs=163.9
Q ss_pred CChHHHHHHHHHHHhCC---CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 13 LPIASVEKRLVEEVRKN---DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g---~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
..++|||+..+..+..+ +.-+|+.|-|+|||..-...+... ++.++++......+.|...++..|.......
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 45789999999888743 467999999999993321111111 4567788777888888888877777654333
Q ss_pred eEeEeEe--------------ecC-------CCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 90 RVGYSIR--------------FDD-------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 90 ~~~~~~~--------------~~~-------~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
..-++.. ... ..-..+++..++.. .+-+++++||+|..+..+ +...+--...
T Consensus 376 i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~---~EWGllllDEVHvvPA~M--FRRVlsiv~a-- 448 (776)
T KOG1123|consen 376 ICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG---REWGLLLLDEVHVVPAKM--FRRVLSIVQA-- 448 (776)
T ss_pred eEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc---CeeeeEEeehhccchHHH--HHHHHHHHHH--
Confidence 2222211 111 11112223344433 456899999999544433 2222221111
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC--ChHHHH--hhhCCCceEEec-----
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL--DARGFS--EYFGCAKAVHVQ----- 219 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~--~~~~l~--~~~~~~~~~~~~----- 219 (431)
+ .-+++|||+ ..+.+. .|+-+++.+..+
T Consensus 449 ------------------------------------------H-cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~ 485 (776)
T KOG1123|consen 449 ------------------------------------------H-CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQ 485 (776)
T ss_pred ------------------------------------------H-hhccceeEEeeccccccccceeecchhhhccHHHHH
Confidence 1 236788888 333333 222222211111
Q ss_pred --Cce--eeeeEeeecCCCc---chH-----------------HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 014085 220 --GRQ--FPVEILYTLYPEP---DYL-----------------DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQ 275 (431)
Q Consensus 220 --~~~--~~~~~~~~~~~~~---~~~-----------------~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~ 275 (431)
+-. ..+...+.+.... +|+ -+...-+++.+.. .+.++|||..++-...+.|-.|.
T Consensus 486 ~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~ 564 (776)
T KOG1123|consen 486 KKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLG 564 (776)
T ss_pred hCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcC
Confidence 000 1111111111110 000 1122334444443 36789999988876666666553
Q ss_pred HHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCC-CCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCcee
Q 014085 276 ERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA-AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMES 354 (431)
Q Consensus 276 ~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~-~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~ 354 (431)
+ + .++|.+++.||..|++.|+ +..++.++-+-+....+|+|..++.|+ ..+.
T Consensus 565 K------------p--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ--------ISSH----- 617 (776)
T KOG1123|consen 565 K------------P--FIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSH----- 617 (776)
T ss_pred C------------c--eEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEE--------Eccc-----
Confidence 3 2 3589999999999999998 678999999999999999999999998 2222
Q ss_pred eeeeecCHHHHHHhhcccCCCC
Q 014085 355 LLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 355 ~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
--|...=.||.||.-|+.
T Consensus 618 ----~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 618 ----GGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ----ccchHHHHHHHHHHHHHh
Confidence 234555689999998876
No 126
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.54 E-value=3.1e-14 Score=126.65 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=75.5
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc---cCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC---RDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~---~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
+...++++|.+++..+.+|+++++++|||+|||......+...... ..+.+++++.|++.++.|+...+..+....
T Consensus 18 ~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~- 96 (203)
T cd00268 18 GFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT- 96 (203)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC-
Confidence 3445899999999999999999999999999995533333333222 245678888999999999988776664421
Q ss_pred CCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCc
Q 014085 88 GQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (431)
Q Consensus 88 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~ 129 (431)
+..+....+. .....+...+...+.. ..+.+++++|+||+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR 154 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH
Confidence 2222111100 0011222223222222 2357799999999994
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=7.2e-13 Score=136.37 Aligned_cols=117 Identities=23% Similarity=0.244 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC-cEEE
Q 014085 239 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVI 317 (431)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~-~~vL 317 (431)
...+..+...+. .+.|+||-+.|.+..+.++..|.+. ++....++..-...|-.-|- ..|+ ..|-
T Consensus 555 ~ai~~ei~~~~~--~grPvLigt~si~~se~ls~~L~~~---------gi~h~vLNak~~~~Ea~iia---~AG~~g~VT 620 (970)
T PRK12899 555 HAIVAEIASIHR--KGNPILIGTESVEVSEKLSRILRQN---------RIEHTVLNAKNHAQEAEIIA---GAGKLGAVT 620 (970)
T ss_pred HHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHc---------CCcceecccchhhhHHHHHH---hcCCCCcEE
Confidence 344444444443 3678999999999999999999987 88877777763333332222 2343 5799
Q ss_pred EecCccccccccCCc--------EEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 318 LATNIAETSVTIPGI--------KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 318 vaT~~~~~Gvdip~v--------~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
|||++++||.||.-- =+||-+. .+.|..--.|-.||+||.| +|.+-.++|-+
T Consensus 621 IATNmAGRGTDIkl~~~v~~~GGLhVIgTe------------------r~es~Rid~Ql~GRagRQGdpGss~f~lSlE 681 (970)
T PRK12899 621 VATNMAGRGTDIKLDEEAVAVGGLYVIGTS------------------RHQSRRIDRQLRGRCARLGDPGAAKFFLSFE 681 (970)
T ss_pred EeeccccCCcccccCchHHhcCCcEEEeec------------------cCchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 999999999998421 2444322 4677777899999999999 99988787744
No 128
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.51 E-value=3.6e-12 Score=134.49 Aligned_cols=164 Identities=14% Similarity=0.172 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcE
Q 014085 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 315 (431)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~ 315 (431)
++.+.+...+.... ..+|+++|+++|.+..+.++..|... .+.+ ...|.-. .+..+++.|++++..
T Consensus 631 ~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~--~~~~l~~~F~~~~~~ 696 (820)
T PRK07246 631 VYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNG--TAYNIKKRFDRGEQQ 696 (820)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCc--cHHHHHHHHHcCCCe
Confidence 45555555555544 34789999999999999999888643 2333 2334221 245688899999899
Q ss_pred EEEecCccccccccC--CcEEEEeCccccceeecCC----------CCceee--eeeecCHHHHHHhhcccCCCC--CcE
Q 014085 316 VILATNIAETSVTIP--GIKYVIDPGFVKARLYDPV----------KGMESL--LVVPISKAQALQRSGRAGREG--PGK 379 (431)
Q Consensus 316 vLvaT~~~~~Gvdip--~v~~VI~~~~~~~~~~d~~----------~~~~~~--~~~p~s~~~~~qr~GR~gR~~--~G~ 379 (431)
||++|..+-+|||+| +...||-.++.-..--|+. .+...+ -..|.-...+.|-+||.-|.. .|.
T Consensus 697 vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv 776 (820)
T PRK07246 697 ILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA 776 (820)
T ss_pred EEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE
Confidence 999999999999997 4555665565421101100 010111 112445677999999999988 676
Q ss_pred EEEeeC---hhhhhcCcCCCCC---ceeccCchHHHHHHH
Q 014085 380 CFRLYP---ENEFDKLEDSTKP---EIKRCNLSNVILQLK 413 (431)
Q Consensus 380 ~~~l~~---~~~~~~~~~~~~~---~~~~~~l~~~~l~l~ 413 (431)
++.+-. ...|-+.-..+.| .+...++.++...++
T Consensus 777 v~ilD~R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~~~~ 816 (820)
T PRK07246 777 VLILDRRILTKSYGKQILASLAEEFLISQQNFSDVLVEID 816 (820)
T ss_pred EEEECCcccccHHHHHHHHhCCCCCccccCCHHHHHHHHH
Confidence 554422 2234221122233 255566666655554
No 129
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.51 E-value=2.7e-14 Score=107.15 Aligned_cols=81 Identities=35% Similarity=0.584 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecC
Q 014085 269 SVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (431)
Q Consensus 269 ~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~ 348 (431)
.++..|.+. ++.+..+||+++.++|..+++.|+++..+|||+|+++++|+|+|++++||. ++
T Consensus 2 ~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~- 63 (82)
T smart00490 2 ELAELLKEL---------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YD- 63 (82)
T ss_pred HHHHHHHHC---------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eC-
Confidence 345556554 888999999999999999999999999999999999999999999999997 44
Q ss_pred CCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 349 VKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
.|.+...|.|++||++|.|
T Consensus 64 ---------~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 64 ---------LPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred ---------CCCCHHHHHHhhcccccCC
Confidence 4889999999999999975
No 130
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.49 E-value=9.2e-12 Score=129.27 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=77.3
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcC----------------------C----
Q 014085 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA----------------------A---- 310 (431)
Q Consensus 257 ~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f----------------------~---- 310 (431)
.+|=+++.+.+..+++.|.+... .....+.+.+||+..+...|..+++.. +
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~---~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~ 835 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLA---EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPA 835 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcc---ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccc
Confidence 57888999999999999987743 222356788899999888888776442 1
Q ss_pred CCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 311 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 311 ~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
.+...|+|+|++.|.|+|+ +.+++|- .+.+..+.+||+||+.|.+
T Consensus 836 ~~~~~i~v~Tqv~E~g~D~-dfd~~~~--------------------~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 836 LNHLFIVLATPVEEVGRDH-DYDWAIA--------------------DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred cCCCeEEEEeeeEEEEecc-cCCeeee--------------------ccCcHHHHHHHhhcccccc
Confidence 2467899999999999999 5777773 4889999999999999988
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=1.2e-11 Score=124.36 Aligned_cols=106 Identities=26% Similarity=0.295 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcEEEEecCccccccccC
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIP 330 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~vLvaT~~~~~Gvdip 330 (431)
..+.|+||.+.|.+..+.++..|.+. +++...+++.-...| .+|+. ..| ...|-|||++++||-||.
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~---------gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIk 492 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAA---------GVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIR 492 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhC---------CCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCee
Confidence 34778999999999999999999987 888888887644333 22322 234 347999999999999984
Q ss_pred C---------------cEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 331 G---------------IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 331 ~---------------v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
- ==+||-+. .+.|..-=-|-.||+||.| +|.+-.++|-+
T Consensus 493 Lg~~~~~~~~~V~~~GGLhVIgTe------------------rheSrRID~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 493 LGGSDEADRDRVAELGGLHVIGTG------------------RHRSERLDNQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred cCCCcccchHHHHHcCCcEEEecc------------------CCchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 1 12455322 4667777799999999999 99877777644
No 132
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.37 E-value=6.3e-11 Score=127.31 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcE
Q 014085 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 315 (431)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~ 315 (431)
.+.+.+...+..... ..+|++|||++|.+..+.+++.|...... .++.+. --+++...|..+++.|++++-.
T Consensus 735 ~~~~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----~~~~ll--~Qg~~~~~r~~l~~~F~~~~~~ 806 (928)
T PRK08074 735 EYIEEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL-----EGYVLL--AQGVSSGSRARLTKQFQQFDKA 806 (928)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc-----cCceEE--ecCCCCCCHHHHHHHHHhcCCe
Confidence 444555555555443 34679999999999999999999764210 123322 2244445688899999999889
Q ss_pred EEEecCccccccccCC--cEEEEeCccccc-ee----------ec--CCCCceeeeeeecCHHHHHHhhcccCCCC--Cc
Q 014085 316 VILATNIAETSVTIPG--IKYVIDPGFVKA-RL----------YD--PVKGMESLLVVPISKAQALQRSGRAGREG--PG 378 (431)
Q Consensus 316 vLvaT~~~~~Gvdip~--v~~VI~~~~~~~-~~----------~d--~~~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G 378 (431)
||++|..+.+|||+|+ .++||-.++.-. +. +. ..+.... -..|.-...+.|-+||.-|.. .|
T Consensus 807 iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~-~~lP~A~~~lkQg~GRlIRs~~D~G 885 (928)
T PRK08074 807 ILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQE-LSLPQAVLRFKQGFGRLIRTETDRG 885 (928)
T ss_pred EEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhh-hhhHHHHHHHHhhhhhhcccCCceE
Confidence 9999999999999985 488887665421 10 00 0011111 112555677899999999988 56
Q ss_pred EEEEeeC---hhhhhcCcCCCC--CceeccCchHHHHHHHH
Q 014085 379 KCFRLYP---ENEFDKLEDSTK--PEIKRCNLSNVILQLKA 414 (431)
Q Consensus 379 ~~~~l~~---~~~~~~~~~~~~--~~~~~~~l~~~~l~l~~ 414 (431)
.++.+-+ ...|-+.-..+. -.+.+.++.++.-.++.
T Consensus 886 ~v~ilD~R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~~~~ 926 (928)
T PRK08074 886 TVFVLDRRLTTTSYGKYFLESLPTVPVYEGTLEELLEEVEE 926 (928)
T ss_pred EEEEecCccccchHHHHHHHhCCCCCcccCCHHHHHHHHHh
Confidence 5444421 223422111222 24555677777666654
No 133
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=2.5e-12 Score=103.83 Aligned_cols=119 Identities=21% Similarity=0.138 Sum_probs=71.3
Q ss_pred hCCCEEEEEcCCCCChhc-cHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCC--C-C
Q 014085 27 RKNDILIIVGETGSGKTT-QLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR--T-S 102 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~-~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~ 102 (431)
.+|+..+|-..+|||||. .+|.++.+... .+.+++++.|++.++.++.+.+............+........ . .
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc 79 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMC 79 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEE
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccc
Confidence 467888999999999995 57777765432 2567999999999999999877533211000000000000000 0 1
Q ss_pred hhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 103 TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
..+-...++......+++++|+||||..++.+..+...++.+...
T Consensus 80 ~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~ 124 (148)
T PF07652_consen 80 HATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES 124 (148)
T ss_dssp HHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc
Confidence 122222334444578999999999999999999999999888654
No 134
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.31 E-value=6.8e-11 Score=121.25 Aligned_cols=280 Identities=10% Similarity=-0.028 Sum_probs=154.0
Q ss_pred EEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhc
Q 014085 33 IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALL 112 (431)
Q Consensus 33 vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (431)
+..+.+|||||.....++..... .|+.++++.|...+..|..+++...++.. . + ....+..+...+...|..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~--~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~--~-v---~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR--AGRGALVVVPDQRDVDRLEAALRALLGAG--D-V---AVLSAGLGPADRYRRWLA 235 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH--cCCeEEEEecchhhHHHHHHHHHHHcCCC--c-E---EEECCCCCHHHHHHHHHH
Confidence 33444699999555454444322 36679999999999999999998877611 1 1 123455566666554432
Q ss_pred c----------------cCCCCCcEEEEecCCcCccchHHHHHH-HHHHHHhhccccCCCCCCCCCCCCccccccCCCCC
Q 014085 113 D----------------PYLSRYSAIIVDEAHERTVHTDVLLGL-LKKVQNARSKSADGHSNGNNNNENSDMILDRGNDT 175 (431)
Q Consensus 113 ~----------------~~~~~~~~lViDEah~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 175 (431)
- .-+.++++||+||-|..++..+....+ .+.+...|
T Consensus 236 ~~~G~~~IViGtRSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~R--------------------------- 288 (665)
T PRK14873 236 VLRGQARVVVGTRSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLR--------------------------- 288 (665)
T ss_pred HhCCCCcEEEEcceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHH---------------------------
Confidence 1 117789999999999644433211110 01111111
Q ss_pred CCcccccccccCCCCCceEEEEcCCCChHHHHhhhCC-CceEEecC---ceeeeeEeeecCCC--------c---chHHH
Q 014085 176 NGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGC-AKAVHVQG---RQFPVEILYTLYPE--------P---DYLDA 240 (431)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~--------~---~~~~~ 240 (431)
....+..+|+.|||++.+.+.....+ ...+.... ......+....... . .....
T Consensus 289 -----------a~~~~~~lvLgSaTPSles~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~ 357 (665)
T PRK14873 289 -----------AHQHGCALLIGGHARTAEAQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSL 357 (665)
T ss_pred -----------HHHcCCcEEEECCCCCHHHHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHH
Confidence 00157789999999988887643221 11011000 00111111111100 0 02223
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCCHH-------------------------------------------------------
Q 014085 241 TLITIFQVHLDEAPGDILVFLTGQE------------------------------------------------------- 265 (431)
Q Consensus 241 ~~~~~~~~~~~~~~~~~lVF~~s~~------------------------------------------------------- 265 (431)
.+..+.+.+. .+ ++|||+|.+-
T Consensus 358 l~~~i~~~L~--~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 358 AFRAARDALE--HG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLR 434 (665)
T ss_pred HHHHHHHHHh--cC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcce
Confidence 3334444433 24 8999999764
Q ss_pred ----HHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC----ccccccccCCcEEEEe
Q 014085 266 ----EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN----IAETSVTIPGIKYVID 337 (431)
Q Consensus 266 ----~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~----~~~~Gvdip~v~~VI~ 337 (431)
.++.+.+.|.+. +++.++..+. +..+++.|. ++.+|||+|+ +++ ++++.|+.
T Consensus 435 ~~g~Gter~eeeL~~~-------FP~~~V~r~d-------~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~i 494 (665)
T PRK14873 435 AVVVGARRTAEELGRA-------FPGVPVVTSG-------GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALL 494 (665)
T ss_pred eeeccHHHHHHHHHHH-------CCCCCEEEEC-------hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEE
Confidence 222233333332 2234444322 234677886 5999999999 665 24555543
Q ss_pred CccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 338 ~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
-. -|..-+..++.....+...+.|-+||+||.. .|.++....++
T Consensus 495 ld------aD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 495 LD------AWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred Ec------chhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 11 3333344445445667788899999999988 89888776544
No 135
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.29 E-value=4.1e-11 Score=105.51 Aligned_cols=75 Identities=24% Similarity=0.169 Sum_probs=59.8
Q ss_pred hccCChHHHHHHHHHHHhCC-CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 10 RKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
....+++++|.+++..+..+ +++++.+|||+|||+.+..++...........++++.|+..++.+....+.....
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34567899999999999998 9999999999999976666665554443345788899999998888887776554
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.25 E-value=1.5e-11 Score=107.28 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHhC-------CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 13 LPIASVEKRLVEEVRK-------NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~-------g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
+.++++|.+++..+.. .+.+++.+|||||||.++..++..... .++++.|+..+..|....+..+.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhh
Confidence 5789999999999983 689999999999999666544444432 67888899999999988774333
No 137
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=4.6e-10 Score=115.85 Aligned_cols=117 Identities=23% Similarity=0.200 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcEEE
Q 014085 239 DATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVI 317 (431)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~vL 317 (431)
...+..+...+ ..+.||||-+.|.+..+.+++.|.+. +++.-+|+..-...|-.-|- ..| ...|-
T Consensus 436 ~Ai~~ei~~~~--~~GrPVLVGT~SVe~SE~ls~~L~~~---------gi~h~VLNAk~~~~EA~IIa---~AG~~GaVT 501 (913)
T PRK13103 436 AAIITDIKECM--ALGRPVLVGTATIETSEHMSNLLKKE---------GIEHKVLNAKYHEKEAEIIA---QAGRPGALT 501 (913)
T ss_pred HHHHHHHHHHH--hCCCCEEEEeCCHHHHHHHHHHHHHc---------CCcHHHhccccchhHHHHHH---cCCCCCcEE
Confidence 33444444443 34778999999999999999999987 77766666654333322222 344 45799
Q ss_pred EecCccccccccC-------------------------------------CcEEEEeCccccceeecCCCCceeeeeeec
Q 014085 318 LATNIAETSVTIP-------------------------------------GIKYVIDPGFVKARLYDPVKGMESLLVVPI 360 (431)
Q Consensus 318 vaT~~~~~Gvdip-------------------------------------~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~ 360 (431)
|||++++||-||. +==+||- +..+.
T Consensus 502 IATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIg------------------Terhe 563 (913)
T PRK13103 502 IATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIA------------------SERHE 563 (913)
T ss_pred EeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEe------------------eccCc
Confidence 9999999999983 0113442 22466
Q ss_pred CHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 361 SKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 361 s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
|..-=-|-.||+||.| +|.+-.++|-+
T Consensus 564 SrRID~QLrGRaGRQGDPGsS~f~lSlE 591 (913)
T PRK13103 564 SRRIDNQLRGRAGRQGDPGSSRFYLSLE 591 (913)
T ss_pred hHHHHHHhccccccCCCCCceEEEEEcC
Confidence 6666689999999999 99877777644
No 138
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.20 E-value=9.5e-10 Score=112.01 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=66.4
Q ss_pred CCceEEEEcCCCCCHHHHhhhhCcCCCCCc--E-EEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecC
Q 014085 285 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFR--K-VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (431)
Q Consensus 285 ~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~--~-vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s 361 (431)
..|+.+..+||.|+..+|..+++.|.+... . .|.+|-+.+.|+++-+.+.||. ||+. ..
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil--------~D~d----------WN 678 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL--------FDPD----------WN 678 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE--------eCCC----------CC
Confidence 448899999999999999999999976533 4 4666778999999988888887 8854 44
Q ss_pred HHHHHHhhcccCCCCC---cEEEEeeCh
Q 014085 362 KAQALQRSGRAGREGP---GKCFRLYPE 386 (431)
Q Consensus 362 ~~~~~qr~GR~gR~~~---G~~~~l~~~ 386 (431)
++.=.|.++|+=|.|+ =..|+|++.
T Consensus 679 Pa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 679 PAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred chhHHHHHHHhccCCCcceEEEEEeecC
Confidence 4556899999999993 346777753
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=99.19 E-value=5.6e-11 Score=119.19 Aligned_cols=106 Identities=15% Similarity=0.256 Sum_probs=79.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHh----cCCcCCCc--eEEEEcCCCCCHHHHhhhhC---cCCCCCcEEEEecCccccc
Q 014085 256 DILVFLTGQEEIESVERLVQERLL----QLPEASRK--LVTVPIFSSLPSEQQMRVFA---PAAAGFRKVILATNIAETS 326 (431)
Q Consensus 256 ~~lVF~~s~~~~~~l~~~l~~~~~----~~~~~~~~--~~v~~lhg~~~~~~r~~i~~---~f~~g~~~vLvaT~~~~~G 326 (431)
+.|-||.+.+....++..+....+ ++..+.++ +.+....|.|...+|...+. .|...+.+||-..-++++|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 478899988887777777665443 22222334 45566778999998865543 5677889999999999999
Q ss_pred cccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcE
Q 014085 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGK 379 (431)
Q Consensus 327 vdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~ 379 (431)
||+|+.+.||= ||+.+ +.-+.+|-+||.-|..+|+
T Consensus 542 VDVPaLDsViF--------f~pr~----------smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRS----------SMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CCccccceEEE--------ecCch----------hHHHHHHHHHHHHHhCcCC
Confidence 99999999995 77544 4455899999999988665
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=2.3e-09 Score=109.75 Aligned_cols=161 Identities=21% Similarity=0.225 Sum_probs=101.6
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeeeEeeecC----CCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVEILYTLY----PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~ 266 (431)
++.+||.|. ..+++.+.++ ..++.++.. .|....-.+. .........+..+...+ ..+.|+||.|.|.+.
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~-l~Vv~IPTn-kP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~--~~gqPVLVgT~SIe~ 438 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYN-MRVNVVPTN-KPVIRKDEPDSIFGTKHAKWKAVVKEVKRVH--KKGQPILIGTAQVED 438 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhC-CCEEECCCC-CCeeeeeCCCcEEEcHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHH
Confidence 678999998 3334444444 334444432 1221111111 11223334444444444 347789999999999
Q ss_pred HHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcEEEEecCccccccccCCcE--------EEEe
Q 014085 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVILATNIAETSVTIPGIK--------YVID 337 (431)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~vLvaT~~~~~Gvdip~v~--------~VI~ 337 (431)
.+.++..|.+. ++...++++.-.. ++.-+-. ..| ...|-|||++++||-||.--. +||.
T Consensus 439 SE~ls~~L~~~---------gi~h~vLNAk~~e--~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIg 506 (925)
T PRK12903 439 SETLHELLLEA---------NIPHTVLNAKQNA--REAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLG 506 (925)
T ss_pred HHHHHHHHHHC---------CCCceeecccchh--hHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEe
Confidence 99999999987 8887778876332 3322222 345 457999999999999995222 6775
Q ss_pred CccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 338 ~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
+. .+.|..-=-|..||+||.| +|.+-.++|-+
T Consensus 507 Te------------------rheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 507 TD------------------KAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred cc------------------cCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 33 3555555579999999999 99876666643
No 141
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.14 E-value=1.4e-09 Score=111.79 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=51.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCH-HHHhhhhCcCCCC-CcEEEEecCcccccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS-EQQMRVFAPAAAG-FRKVILATNIAETSVTI 329 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~-~~r~~i~~~f~~g-~~~vLvaT~~~~~Gvdi 329 (431)
..+.|+||-+.|.+..+.++..|.+. +++..++++.-.. +.-.+|+.. .| ...|-|||++++||.||
T Consensus 422 ~~grPVLIgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 422 QTGRPILIGTTTIEKSELLSQLLKEY---------RLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred hcCCCEEEeeCCHHHHHHHHHHHHHc---------CCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCe
Confidence 34778999999999999999999987 8888888886322 222233322 34 45799999999999998
No 142
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.14 E-value=3.8e-10 Score=93.40 Aligned_cols=55 Identities=29% Similarity=0.253 Sum_probs=42.7
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
+++++.+|||+|||+.+..++.........+.++++.|+..+..+..+.+.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~ 55 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFG 55 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhh
Confidence 4689999999999977766665554433456788999999999998887776654
No 143
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.06 E-value=1.8e-08 Score=100.56 Aligned_cols=110 Identities=23% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC---CcEEEEecCcccccccc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG---FRKVILATNIAETSVTI 329 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g---~~~vLvaT~~~~~Gvdi 329 (431)
.+.+||||..-...-+-|-+++.-+ +|...-+.|.++.++|...++.|... ..-.|++|-+.+-|+|+
T Consensus 486 ~GhRVLIFSQmt~mLDILeDyc~~R---------~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 486 QGHRVLIFSQMTRMLDILEDYCMLR---------GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred CCCeEEEeHHHHHHHHHHHHHHHhc---------CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 3778999976665555555555443 89999999999999999999999754 34579999999999999
Q ss_pred CCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChhhh
Q 014085 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (431)
Q Consensus 330 p~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~~ 389 (431)
-..++||- ||+..+ |. .=+|..-||.|.| +=.+|+|++++..
T Consensus 557 ~aADtVIl--------yDSDWN-------PQ---~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 557 TAADTVIL--------YDSDWN-------PQ---VDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred ccccEEEE--------ecCCCC-------ch---hhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 99999997 997665 32 2466667777766 5669999987643
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.01 E-value=2.3e-08 Score=101.67 Aligned_cols=127 Identities=18% Similarity=0.132 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCC----C
Q 014085 237 YLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----G 312 (431)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~----g 312 (431)
+.+.....+..... ...|.++|.+.|....+.+++.|...+ .+.+ ...|..+ .+..+++.|++ |
T Consensus 454 ~~~~~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~~~-l~qg~~~--~~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGI--------PAEI-VIQSEKN--RLASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhc--------CCCE-EEeCCCc--cHHHHHHHHHHhhcCC
Confidence 44444455555443 347899999999999999999997742 2333 3455442 34556777765 5
Q ss_pred CcEEEEecCcccccccc----------CCcEEEEeCccccceeecCC--------CCceeeeeeecCHHHHHHhhcccCC
Q 014085 313 FRKVILATNIAETSVTI----------PGIKYVIDPGFVKARLYDPV--------KGMESLLVVPISKAQALQRSGRAGR 374 (431)
Q Consensus 313 ~~~vLvaT~~~~~Gvdi----------p~v~~VI~~~~~~~~~~d~~--------~~~~~~~~~p~s~~~~~qr~GR~gR 374 (431)
...||++|+.+-+|||+ ...++||...+.--. =|+. .+...+...|.....+.|-+||.-|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 358888876654221 1111 1112222235666778899999999
Q ss_pred CC
Q 014085 375 EG 376 (431)
Q Consensus 375 ~~ 376 (431)
..
T Consensus 601 ~~ 602 (636)
T TIGR03117 601 HP 602 (636)
T ss_pred cC
Confidence 76
No 145
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.94 E-value=9e-08 Score=91.16 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=82.4
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCC-CCcEE-EEecCccccccc
Q 014085 251 DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKV-ILATNIAETSVT 328 (431)
Q Consensus 251 ~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~-g~~~v-LvaT~~~~~Gvd 328 (431)
..++.+.+|||.-..--+.+...+.+. ++...-+.|.++..+|....+.|.. .+++| +++-.+++.|++
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt 559 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLT 559 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeeccccee
Confidence 345678999999999999999999887 8888888999999999999999984 45666 666778899999
Q ss_pred cCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 329 ip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
+.+.+.|+ +...+.++.-.+|.--|+.|.|
T Consensus 560 ~tAa~~VV------------------FaEL~wnPgvLlQAEDRaHRiG 589 (689)
T KOG1000|consen 560 LTAASVVV------------------FAELHWNPGVLLQAEDRAHRIG 589 (689)
T ss_pred eeccceEE------------------EEEecCCCceEEechhhhhhcc
Confidence 99999999 2334666666888888888888
No 146
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.90 E-value=5.3e-08 Score=101.73 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=104.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC---CcEEEEecCccccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG---FRKVILATNIAETSVT 328 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g---~~~vLvaT~~~~~Gvd 328 (431)
..+.+||||..-+..-+-|+++|.-+ +|+..-+.|.+..+.|+..+..|... ..-.|+||-+.+-|||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 33678999999999999999999887 99999999999999999999999643 4568999999999999
Q ss_pred cCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC---cEEEEeeChhhhhc-CcCCCCCceeccC
Q 014085 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPENEFDK-LEDSTKPEIKRCN 404 (431)
Q Consensus 329 ip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~---G~~~~l~~~~~~~~-~~~~~~~~~~~~~ 404 (431)
+-..+.||. ||+..+ +..=+|...||.|.|+ =.+|+|++++.++. +-+. .-+++-
T Consensus 768 LatADTVII--------FDSDWN----------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER---Ak~Kmv 826 (1373)
T KOG0384|consen 768 LATADTVII--------FDSDWN----------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER---AKLKMV 826 (1373)
T ss_pred ccccceEEE--------eCCCCC----------cchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH---HHHHhh
Confidence 999998887 997665 2235899999999993 24899999876643 1110 123445
Q ss_pred chHHHHHHHH
Q 014085 405 LSNVILQLKA 414 (431)
Q Consensus 405 l~~~~l~l~~ 414 (431)
|+.+|+|.-.
T Consensus 827 LD~aVIQ~m~ 836 (1373)
T KOG0384|consen 827 LDHAVIQRMD 836 (1373)
T ss_pred hHHHHHHhhc
Confidence 6677776544
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=6e-08 Score=99.99 Aligned_cols=67 Identities=27% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC-CCHHHHhhhhCcCCCC-CcEEEEecCcccccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS-LPSEQQMRVFAPAAAG-FRKVILATNIAETSVTI 329 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~-~~~~~r~~i~~~f~~g-~~~vLvaT~~~~~Gvdi 329 (431)
..+.|+||-+.|.+..+.++..|.+. +++..+++.. ...+.-.+|+.. .| ...|-|||++++||-||
T Consensus 437 ~~GrPVLIgT~SVe~SE~ls~~L~~~---------gi~h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 437 KQGRPVLVGTTSVEKSELLSALLQEQ---------GIPHNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred hCCCCEEEeeCCHHHHHHHHHHHHHc---------CCchheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCE
Confidence 34778999999999999999999987 8888778875 222222233322 34 35789999999999998
No 148
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.88 E-value=1.2e-07 Score=96.87 Aligned_cols=291 Identities=18% Similarity=0.148 Sum_probs=153.7
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCC-----
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS----- 102 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 102 (431)
.....+|-+|-|||||+.+..++..... .....++++.-++.++.+...++....- ...+.|.........
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcCC---CcceeeeccccccccccccC
Confidence 4456799999999999888777766532 2245788888899999888887643211 111122111111111
Q ss_pred ----hhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCc
Q 014085 103 ----TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGI 178 (431)
Q Consensus 103 ----~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 178 (431)
+-.-+.+. ..+.+.+++++|+||+-+. -..++...+++.. ...
T Consensus 124 rLivqIdSL~R~-~~~~l~~yDvVIIDEv~sv--L~qL~S~Tm~~~~------------------------------~v~ 170 (824)
T PF02399_consen 124 RLIVQIDSLHRL-DGSLLDRYDVVIIDEVMSV--LNQLFSPTMRQRE------------------------------EVD 170 (824)
T ss_pred eEEEEehhhhhc-ccccccccCEEEEehHHHH--HHHHhHHHHhhHH------------------------------HHH
Confidence 11111122 2345778999999997410 0001111111100 001
Q ss_pred ccccccccCCCCCceEEEEcCCCChHHHH---hhhCCCceEEecCce----eee-eEeeecC-----------CC-----
Q 014085 179 NTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAVHVQGRQ----FPV-EILYTLY-----------PE----- 234 (431)
Q Consensus 179 ~~~~~~~~~~~~~~~~v~lSAT~~~~~l~---~~~~~~~~~~~~~~~----~~~-~~~~~~~-----------~~----- 234 (431)
..+..+.+ ...++|++-|+++..-+. .+-++..+..+.+.. +.- .-.+... +.
T Consensus 171 ~~L~~lI~---~ak~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~ 247 (824)
T PF02399_consen 171 NLLKELIR---NAKTVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENAD 247 (824)
T ss_pred HHHHHHHH---hCCeEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccc
Confidence 11222222 234688899999555443 333443332222211 000 0000000 00
Q ss_pred -----------------cchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCC
Q 014085 235 -----------------PDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSL 297 (431)
Q Consensus 235 -----------------~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~ 297 (431)
..........+...+. .++++-||+.|...++.+++..... ...|..++|.-
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~ 316 (824)
T PF02399_consen 248 TSPTPKHSPDPTATAAISNDETTFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTD 316 (824)
T ss_pred cCCCcCCCCccccccccccchhhHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCC
Confidence 0001122233333332 2667889999999999998888776 77888888765
Q ss_pred CHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC
Q 014085 298 PSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (431)
Q Consensus 298 ~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~ 377 (431)
+.. .+. . =++.+|++=|+++..|+++.+...=--+++ +.+.. .-.+..+..|++||+-....
T Consensus 317 ~~~---dv~-~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~y-----vk~~~-------~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 317 KLE---DVE-S--WKKYDVVIYTPVITVGLSFEEKHFDSMFAY-----VKPMS-------YGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred Ccc---ccc-c--ccceeEEEEeceEEEEeccchhhceEEEEE-----ecCCC-------CCCcHHHHHHHHHHHHhhcc
Confidence 444 222 1 357899999999999999953211000000 11111 12345568999999866666
Q ss_pred cEEEEeeChh
Q 014085 378 GKCFRLYPEN 387 (431)
Q Consensus 378 G~~~~l~~~~ 387 (431)
.+.+.-++..
T Consensus 379 ~ei~v~~d~~ 388 (824)
T PF02399_consen 379 NEIYVYIDAS 388 (824)
T ss_pred CeEEEEEecc
Confidence 6666666543
No 149
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.81 E-value=6.8e-07 Score=89.87 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=86.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCc--EEEEecCccccccccCC
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR--KVILATNIAETSVTIPG 331 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~--~vLvaT~~~~~Gvdip~ 331 (431)
+.++|.|..|+....-+-..|... .+|...-+.|.++...|..++..|.+++. -.|++|-+.+-|+|+-.
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTg 617 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTG 617 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEeccccccccccc
Confidence 568999999999888888877741 39999999999999999999999998865 36888999999999988
Q ss_pred cEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 332 v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
.+-||. |||..+ |.+- .|..-||=|.| .=.+|+|++..
T Consensus 618 AnRVII--------fDPdWN-------PStD---~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 618 ANRVII--------FDPDWN-------PSTD---NQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CceEEE--------ECCCCC-------Cccc---hHHHHHHHhhcCccceEEEEEecCC
Confidence 888886 998776 4443 55555666666 44589998754
No 150
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.60 E-value=5.1e-08 Score=100.44 Aligned_cols=211 Identities=17% Similarity=0.220 Sum_probs=131.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCC---------
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDR--------- 100 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 100 (431)
.++++-+|||+|||..+...+........+.+++++.|...++.....++.+..... |..+.-.. .+..
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~t-gd~~pd~~~v~~~ 1021 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELT-GDVTPDVKAVREA 1021 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEecc-CccCCChhheecC
Confidence 467788999999997777777666655556789999999999987777665544333 22221100 0000
Q ss_pred ---CC----hhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCC
Q 014085 101 ---TS----TSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGN 173 (431)
Q Consensus 101 ---~~----~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 173 (431)
.. .....+.|-....++.++.+|+||.|+ .+-++|+..+++...
T Consensus 1022 ~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl---------------------------lg~~rgPVle~ivsr-- 1072 (1230)
T KOG0952|consen 1022 DIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL---------------------------LGEDRGPVLEVIVSR-- 1072 (1230)
T ss_pred ceEEcccccccCccccccchhhhccccceeeccccc---------------------------ccCCCcceEEEEeec--
Confidence 01 111222455556788999999999982 222333333333332
Q ss_pred CCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEe--cCceeeeeEeeecCCCcchHHHHH---HHHHH
Q 014085 174 DTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHV--QGRQFPVEILYTLYPEPDYLDATL---ITIFQ 247 (431)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 247 (431)
++.......+.+|++++|--+ +..++++|++..+.+.. ..++.|.++.+...|...+..++. +..+.
T Consensus 1073 -------~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~q 1145 (1230)
T KOG0952|consen 1073 -------MNYISSQTEEPVRYLGLSTALANANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQ 1145 (1230)
T ss_pred -------cccCccccCcchhhhhHhhhhhccHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHH
Confidence 233344555777888876444 99999999987666444 345566777777777644444433 23333
Q ss_pred Hhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHH
Q 014085 248 VHL-DEAPGDILVFLTGQEEIESVERLVQERL 278 (431)
Q Consensus 248 ~~~-~~~~~~~lVF~~s~~~~~~l~~~l~~~~ 278 (431)
..+ ..+..++|||+.++.+....+..|...+
T Consensus 1146 aik~~sp~~p~lifv~srrqtrlta~~li~~~ 1177 (1230)
T KOG0952|consen 1146 AIKTHSPIKPVLIFVSSRRQTRLTALDLIASC 1177 (1230)
T ss_pred HHhcCCCCCceEEEeecccccccchHhHHhhc
Confidence 333 3556789999999987777666665543
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.49 E-value=1.3e-06 Score=91.33 Aligned_cols=160 Identities=24% Similarity=0.270 Sum_probs=103.8
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeee------EeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVE------ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ 264 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~ 264 (431)
++-+||.|. ...++.+.++- .++.++.. .|+. ..|. .........+..+...+. .+.|+||-+.|+
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L-~Vv~IPTn-rP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SV 638 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKL-DVVVIPTN-RPIARKDKEDLVYK--TKREKYNAVIEEITELSE--AGRPVLVGTTSV 638 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCC-CEEECCCC-CCcceecCCCeEec--CHHHHHHHHHHHHHHHHH--CCCCEEEEeCcH
Confidence 688999999 44445555543 34444422 1211 1111 112233444555555543 477899999999
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccC--------CcEEEE
Q 014085 265 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVI 336 (431)
Q Consensus 265 ~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip--------~v~~VI 336 (431)
+..+.+++.|... +++.-+|++.....|-.-|-+.= ....|-|||++++||-||. +==+||
T Consensus 639 e~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG--~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VI 707 (1112)
T PRK12901 639 EISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAG--QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAII 707 (1112)
T ss_pred HHHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcC--CCCcEEEeccCcCCCcCcccchhhHHcCCCEEE
Confidence 9999999999987 77766677664444433333322 2356899999999999995 223455
Q ss_pred eCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 337 ~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
- +..+.|..-=-|-.||+||.| +|.+-.++|-+
T Consensus 708 g------------------TerheSrRID~QLrGRaGRQGDPGsS~f~lSLE 741 (1112)
T PRK12901 708 G------------------TERHESRRVDRQLRGRAGRQGDPGSSQFYVSLE 741 (1112)
T ss_pred E------------------ccCCCcHHHHHHHhcccccCCCCCcceEEEEcc
Confidence 3 224777777899999999999 99877776643
No 152
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.38 E-value=6.9e-06 Score=82.80 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=84.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC-c-EEEEecCccccccccCC
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-R-KVILATNIAETSVTIPG 331 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~-~-~vLvaT~~~~~Gvdip~ 331 (431)
+.+||||..=...-+-|-..|... ++...-+.|.+.-..|..++..|-..+ + -.|.+|-+.+-|+|+-+
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccc
Confidence 578999987776666666666665 899999999999999999999998664 3 46899999999999999
Q ss_pred cEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChhhh
Q 014085 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (431)
Q Consensus 332 v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~~ 389 (431)
.++||. ||-+-+ |.+ =.|.--||.|.| +=.+|+|+++...
T Consensus 848 An~VIi--------hD~dFN-------P~d---D~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 848 ANTVII--------HDIDFN-------PYD---DKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred cceEEE--------eecCCC-------Ccc---cchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 999997 553222 222 366667777777 5569999987644
No 153
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.32 E-value=1.8e-05 Score=83.33 Aligned_cols=135 Identities=15% Similarity=0.249 Sum_probs=97.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcEEE-EecCccccccccCC
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRKVI-LATNIAETSVTIPG 331 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~vL-vaT~~~~~Gvdip~ 331 (431)
..++||||.-+...+-+-+.|-+. ..+.+.-..+.|..++.+|.+++++|.++ .++|| .+|.+.+-|+|+-+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~------~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTG 1413 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKK------YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTG 1413 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhh------hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCC
Confidence 457999999999888887766543 23455666789999999999999999988 78875 56779999999999
Q ss_pred cEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcE---EEEeeChhhhhc---------------Cc
Q 014085 332 IKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGK---CFRLYPENEFDK---------------LE 393 (431)
Q Consensus 332 v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~---~~~l~~~~~~~~---------------~~ 393 (431)
.+.||- ++-+. .+..=+|.+-||.|.|+-. +|+|++....+. .-
T Consensus 1414 ADTVVF--------vEHDW----------NPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvI 1475 (1549)
T KOG0392|consen 1414 ADTVVF--------VEHDW----------NPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVI 1475 (1549)
T ss_pred CceEEE--------EecCC----------CchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHH
Confidence 999994 33222 2222399999999999433 788887654322 22
Q ss_pred CCCCCceeccCchHHHHHH
Q 014085 394 DSTKPEIKRCNLSNVILQL 412 (431)
Q Consensus 394 ~~~~~~~~~~~l~~~~l~l 412 (431)
..+...+..++-..++-++
T Consensus 1476 nqqNasl~tM~TdqLLdlF 1494 (1549)
T KOG0392|consen 1476 NQQNASLETMDTDQLLDLF 1494 (1549)
T ss_pred hcccccccccCHHHHHHHh
Confidence 3444556666666644433
No 154
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.24 E-value=3.6e-08 Score=88.81 Aligned_cols=145 Identities=18% Similarity=0.121 Sum_probs=86.2
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCc------------------EEEE
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK------------------LIGV 64 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~------------------~v~v 64 (431)
++++.+....|..+++.+.+...+.+|+.+.|.||+||||||++..+....... .|. .+.+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~-~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCCchhhcCHHHHhhhEEE
Confidence 345666777788888888899999999999999999999999987776543321 111 2222
Q ss_pred eCchhH-----HHHHHhHH----HHHHhC---C----------ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEE
Q 014085 65 TQPRRV-----AAVTVAKR----VAEESG---V----------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAI 122 (431)
Q Consensus 65 ~~p~~~-----l~~~~~~~----~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (431)
+|-... .+.+.... ...++. . ..-....+..+.-...+..++++.+++....++.+++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 221100 00000000 000000 0 0000000111222234445566677777889999999
Q ss_pred EEec--CCcCccchHHHHHHHHHHHHhh
Q 014085 123 IVDE--AHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 123 ViDE--ah~~~~~~~~~~~~~~~~~~~~ 148 (431)
.+|| .|.+-.+...++++++++...+
T Consensus 161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~ 188 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLELLRDLNREK 188 (258)
T ss_pred EeCCCccccCHHHHHHHHHHHHHHHHhc
Confidence 9999 6777778888999999888654
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.24 E-value=0.0001 Score=79.73 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=43.5
Q ss_pred HhhhhCc--CCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC
Q 014085 302 QMRVFAP--AAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (431)
Q Consensus 302 r~~i~~~--f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~ 377 (431)
+...... .++...++||.+|++-.|+|-|..+.+. .| .|.---..+|.+-|+.|.-+
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY---------vD----------K~Lk~H~L~QAisRtNR~~~ 638 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY---------VD----------KPLKYHNLIQAISRTNRVFP 638 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE---------ec----------cccccchHHHHHHHhccCCC
Confidence 3344444 4567899999999999999999988887 55 34444558999999999763
No 156
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.21 E-value=1.5e-05 Score=69.90 Aligned_cols=97 Identities=23% Similarity=0.255 Sum_probs=56.0
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
+.++++||||+||||.+..+............++-.-..|..+.++-+.+++..+..+. ..............
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~-------~~~~~~~~~~~~~~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFY-------VARTESDPAEIARE 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEE-------ESSTTSCHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccc-------hhhcchhhHHHHHH
Confidence 35789999999999877777666554422223333345666777777777777765410 01111223333333
Q ss_pred HhcccCCCCCcEEEEecCCcCccc
Q 014085 110 ALLDPYLSRYSAIIVDEAHERTVH 133 (431)
Q Consensus 110 ~~~~~~~~~~~~lViDEah~~~~~ 133 (431)
.+......+++++++|-+......
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~~d 98 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSPRD 98 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSSTH
T ss_pred HHHHHhhcCCCEEEEecCCcchhh
Confidence 443334466999999998744333
No 157
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.18 E-value=1e-06 Score=79.06 Aligned_cols=145 Identities=18% Similarity=0.148 Sum_probs=88.1
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc--------------CCcEEEEeC
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR--------------DGKLIGVTQ 66 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~--------------~~~~v~v~~ 66 (431)
|+++++.+....|.-.++.+.+...+.+|+.+.|.||+||||||++..++-...... ++.++-++|
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 456777788888875468888888999999999999999999999988875222110 113566655
Q ss_pred chhHHHHH----HhHHHHHHhCCc---------------------cCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcE
Q 014085 67 PRRVAAVT----VAKRVAEESGVE---------------------LGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSA 121 (431)
Q Consensus 67 p~~~l~~~----~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (431)
-....-.. +.+ +....... .-....+..+.-...+..++++.++++.+.++.++
T Consensus 82 Q~~~~d~~fP~tV~d-~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 82 QKSSVDRSFPITVKD-VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred cccccCCCCCcCHHH-HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 43311100 111 11000000 00011222233345667777788888889999999
Q ss_pred EEEecC-Cc-CccchHHHHHHHHHHHH
Q 014085 122 IIVDEA-HE-RTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 122 lViDEa-h~-~~~~~~~~~~~~~~~~~ 146 (431)
+++||= .- +......+.++++++..
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQ 187 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHH
Confidence 999992 22 23344566777776654
No 158
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.07 E-value=3.7e-06 Score=71.07 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=81.6
Q ss_pred hhhHHHhhccCChH-HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCC--------------------cE
Q 014085 3 RQKILQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG--------------------KL 61 (431)
Q Consensus 3 ~~~~~~~~~~~~~~-~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~--------------------~~ 61 (431)
++++.+..+.|+.. +....+...+.+|+.+.++||+|+||||++.++......+.+. +.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 35667777777654 3778888899999999999999999999988777554432110 01
Q ss_pred EEEe-CchhHHH-HHHhHHHHH---HhCCc----------cCCeEeEe---EeecCCCChhHhHHHHhcccCCCCCcEEE
Q 014085 62 IGVT-QPRRVAA-VTVAKRVAE---ESGVE----------LGQRVGYS---IRFDDRTSTSTRIKEALLDPYLSRYSAII 123 (431)
Q Consensus 62 v~v~-~p~~~l~-~~~~~~~~~---~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 123 (431)
+.++ .-.+.+. ..+++.++- ..+.. .-..+|.. .......+..++++..++....++..+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 1111 1011110 001111100 00000 00011111 12233455666666777777889999999
Q ss_pred EecC--CcCccchHHHHHHHHHHHH
Q 014085 124 VDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 124 iDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
-||= ..++..+..++.++.++..
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr 185 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINR 185 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhh
Confidence 9993 3455556667777776643
No 159
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.07 E-value=2.9e-06 Score=74.73 Aligned_cols=147 Identities=20% Similarity=0.192 Sum_probs=89.6
Q ss_pred CchhhHHHhhccCChHH----HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-------------------
Q 014085 1 MPRQKILQQRKSLPIAS----VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------------------- 57 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~----~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~------------------- 57 (431)
|+++++.+..+.|+-.. +.+.+...+.+|+.+.|+|++||||||++..++-......
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 45677777777777665 7777888888999999999999999999887763322110
Q ss_pred -CCcEEEEeC------chhHHHHHHhHHH------------HHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCC
Q 014085 58 -DGKLIGVTQ------PRRVAAVTVAKRV------------AEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSR 118 (431)
Q Consensus 58 -~~~~v~v~~------p~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (431)
+.-..++=- |....-.-..+-+ .+.. ..++..-.+..+.....+..++++.++++....+
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L-~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELL-DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHH-HHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 001122211 2111111111100 1110 0123333334455556777778888888888899
Q ss_pred CcEEEEecCC--cCccchHHHHHHHHHHHHhh
Q 014085 119 YSAIIVDEAH--ERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 119 ~~~lViDEah--~~~~~~~~~~~~~~~~~~~~ 148 (431)
.+++|+||.= .+.......++++..+...|
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 9999999952 34455567788887776654
No 160
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.04 E-value=4.2e-07 Score=85.23 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=44.8
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|..+++.+..+.|......+.+...+..|+.+++.||+||||||++..++-.
T Consensus 1 M~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 1 MAELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CcEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6778888888988876567778888999999999999999999999888743
No 161
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.03 E-value=9.5e-06 Score=66.37 Aligned_cols=102 Identities=26% Similarity=0.370 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhccccc----CCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCCh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCR----DGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~----~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (431)
+++.++|.||+|+|||+++..+........ +...+.+..|...........+....+..... ....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~ 72 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----------RQTS 72 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------TS-H
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------cCCH
Confidence 466889999999999988888776543210 12334444444443455556666655543211 1111
Q ss_pred hH---hHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHH
Q 014085 104 ST---RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 104 ~~---~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~ 144 (431)
.. .+...+.. ....++|+||+|... ....++.++.+
T Consensus 73 ~~l~~~~~~~l~~---~~~~~lviDe~~~l~--~~~~l~~l~~l 111 (131)
T PF13401_consen 73 DELRSLLIDALDR---RRVVLLVIDEADHLF--SDEFLEFLRSL 111 (131)
T ss_dssp HHHHHHHHHHHHH---CTEEEEEEETTHHHH--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCeEEEEeChHhcC--CHHHHHHHHHH
Confidence 11 11222221 112699999999653 35555555544
No 162
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.02 E-value=6.7e-06 Score=72.75 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC------chhHHHHHHhH-------------
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ------PRRVAAVTVAK------------- 77 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~------p~~~l~~~~~~------------- 77 (431)
...+.+...+.+|+.+.|.||+||||||++-.+-...... .+. +.+.- ....+...-.+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt-~G~-v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGE-VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC-Cce-EEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 4556677788899999999999999999887665443321 121 22211 00011100000
Q ss_pred ------HHH---HHhCCc----------cCCeEeEe---E-eecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCcc
Q 014085 78 ------RVA---EESGVE----------LGQRVGYS---I-RFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTV 132 (431)
Q Consensus 78 ------~~~---~~~~~~----------~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~ 132 (431)
.+. .+.+.. ....+|.. . ......+..++++.++++....+.++++.|| ...+..
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 000 000000 00011111 1 2233456677777778888899999999999 566777
Q ss_pred chHHHHHHHHHHHHh
Q 014085 133 HTDVLLGLLKKVQNA 147 (431)
Q Consensus 133 ~~~~~~~~~~~~~~~ 147 (431)
.+..++++++.....
T Consensus 177 t~~~V~~ll~~~~~~ 191 (226)
T COG1136 177 TAKEVLELLRELNKE 191 (226)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888998888654
No 163
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.99 E-value=9.8e-07 Score=76.16 Aligned_cols=52 Identities=29% Similarity=0.308 Sum_probs=45.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
++++.+..|.|....+.+.+...+.+|+.++|+||+||||||++..+-....
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 5778889999999999999999999999999999999999999877765443
No 164
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.99 E-value=6.1e-07 Score=76.64 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=74.9
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
+..+.++..++.+.+...+.+|+.+.+.||+|||||+++..+.-..... .|. +.+-- .. +...... .. .
T Consensus 5 ~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~-v~~~g-~~-~~~~~~~---~~----~ 73 (163)
T cd03216 5 GITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD-SGE-ILVDG-KE-VSFASPR---DA----R 73 (163)
T ss_pred EEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeE-EEECC-EE-CCcCCHH---HH----H
Confidence 4444554445556666778899999999999999999987776543321 232 32211 00 0000000 00 1
Q ss_pred CCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 88 GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
...+++..+ .+..++.+..++.....+.+++++|| .+.+......+..+++++.
T Consensus 74 ~~~i~~~~q----LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 74 RAGIAMVYQ----LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred hcCeEEEEe----cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 123455443 67777777777777888999999999 4455555666777776653
No 165
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.98 E-value=1.4e-05 Score=68.21 Aligned_cols=125 Identities=23% Similarity=0.186 Sum_probs=72.0
Q ss_pred hhhHHHhhccCChH-HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC----------------CcEEEEe
Q 014085 3 RQKILQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----------------GKLIGVT 65 (431)
Q Consensus 3 ~~~~~~~~~~~~~~-~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----------------~~~v~v~ 65 (431)
|+++....|.|+.. ...+++.+.+.+|+.+.+.||+|+||||++..+.-......+ .+.+.++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 35666777888762 245677888889999999999999999988776633221110 1122222
Q ss_pred C-----chhHHHHHHhHHHHHHhCCccCCe-------------EeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 66 Q-----PRRVAAVTVAKRVAEESGVELGQR-------------VGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 66 ~-----p~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
. +.+..+.++...++...+..-... -.+..+.....+...+.+..++.....+.+++|+||.
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 2 334455555444444443221000 0000011122344445556666677899999999996
No 166
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=3e-06 Score=75.14 Aligned_cols=143 Identities=22% Similarity=0.205 Sum_probs=81.8
Q ss_pred chhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC------------C-cEEEEeC--
Q 014085 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------------G-KLIGVTQ-- 66 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~------------~-~~v~v~~-- 66 (431)
.++++.+..+.|....+.+.+...+.+|+++.+.||+||||||++..+.-......+ + ...++-.
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 456666777788777888889999999999999999999999999887643322111 1 1112211
Q ss_pred ---chhHHHHHHh--------------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--C
Q 014085 67 ---PRRVAAVTVA--------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--A 127 (431)
Q Consensus 67 ---p~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--a 127 (431)
|=+...+++. ....+... .-...++...+....+...+++..++.....+.+++.+|| .
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~--~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLE--LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHH--HcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111111100 00000000 0111223334455566777777888888899999999999 2
Q ss_pred CcCccchHHHHHHHHHHHH
Q 014085 128 HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 128 h~~~~~~~~~~~~~~~~~~ 146 (431)
..+......+-+.+.+++.
T Consensus 160 ALDalTR~~lq~~l~~lw~ 178 (248)
T COG1116 160 ALDALTREELQDELLRLWE 178 (248)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 2223333334444444444
No 167
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.92 E-value=8.7e-06 Score=71.84 Aligned_cols=54 Identities=20% Similarity=0.103 Sum_probs=42.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC 56 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~ 56 (431)
++++.+....+.-.++...+.=.+..|++.+|.||+|||||+++..+.......
T Consensus 31 li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 31 LIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred eEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 455555555666667777788888999999999999999999998887666544
No 168
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00016 Score=69.99 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccc--cCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~--~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
+..++++||||+||||.+..++...... .++..+.++ -+.+..+.++...+++..+..+ .. ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----~~-------~~~~ 242 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----KA-------IESF 242 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce----Ee-------eCcH
Confidence 4578999999999998776666543322 123344444 3444555555555555444321 10 1112
Q ss_pred HhHHHHhcccCCCCCcEEEEecCCcCcc
Q 014085 105 TRIKEALLDPYLSRYSAIIVDEAHERTV 132 (431)
Q Consensus 105 ~~~~~~~~~~~~~~~~~lViDEah~~~~ 132 (431)
..+...+.. ..+.+++++|++.....
T Consensus 243 ~~l~~~L~~--~~~~DlVLIDTaGr~~~ 268 (388)
T PRK12723 243 KDLKEEITQ--SKDFDLVLVDTIGKSPK 268 (388)
T ss_pred HHHHHHHHH--hCCCCEEEEcCCCCCcc
Confidence 233333332 36799999999975443
No 169
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=1.4e-06 Score=78.23 Aligned_cols=48 Identities=23% Similarity=0.287 Sum_probs=35.8
Q ss_pred hhhHHHhhccCChH-HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 3 RQKILQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 3 ~~~~~~~~~~~~~~-~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
++++.+....++.. +..+.+...+.+|+.+++.|||||||||++..+.
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~ 51 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN 51 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 44455555566554 5556677778899999999999999998886654
No 170
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.87 E-value=7.9e-05 Score=65.57 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHH
Q 014085 15 IASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 15 ~~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
+.+-|.+++..+... +..+++||.|+|||+++..+..... ..+..++++.|+..++....+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~--~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALE--AAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHH--HTT--EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHH--hCCCeEEEECCcHHHHHHHHHh
Confidence 467799999998633 4788999999999987765443222 2356788889988888665554
No 171
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.87 E-value=7.4e-07 Score=78.68 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=41.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++.+..+.|.....-.++...+.+|+.+++.||+||||||++.++-..
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc
Confidence 46677788888877778888888999999999999999999988766543
No 172
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=4.6e-06 Score=70.79 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=39.6
Q ss_pred CchhhHHHhhccCChHH--HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 1 MPRQKILQQRKSLPIAS--VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
|.++.+.+....|+..+ ..+.+...+.+|+.+++.||+||||||++..+.
T Consensus 1 M~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred CceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 44555556666665544 888888999999999999999999999887765
No 173
>PF13245 AAA_19: Part of AAA domain
Probab=97.85 E-value=3.7e-05 Score=56.15 Aligned_cols=55 Identities=27% Similarity=0.385 Sum_probs=38.8
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchhHHHHHHhHHH
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
.+..+..++|.||.|||||+.+...+..... ...++.++++.|+..++++..+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3333566777999999999555444443331 122678999999999999888876
No 174
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.00015 Score=75.07 Aligned_cols=105 Identities=23% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCC
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG 331 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~ 331 (431)
..+.|+||-..+.+..+.+.+.|.+. +++-.++...-...|=..+... -...-|=|||+++++|-||.-
T Consensus 427 ~~gqPvLvgT~sie~SE~ls~~L~~~---------~i~h~VLNAk~h~~EA~Iia~A--G~~gaVTiATNMAGRGTDIkL 495 (822)
T COG0653 427 EKGQPVLVGTVSIEKSELLSKLLRKA---------GIPHNVLNAKNHAREAEIIAQA--GQPGAVTIATNMAGRGTDIKL 495 (822)
T ss_pred hcCCCEEEcCcceecchhHHHHHHhc---------CCCceeeccccHHHHHHHHhhc--CCCCccccccccccCCccccc
Confidence 34778999999999999999999987 7666556555443333333322 223457899999999999842
Q ss_pred cE-----------EEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeC
Q 014085 332 IK-----------YVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (431)
Q Consensus 332 v~-----------~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~ 385 (431)
-. +||-+. ...|..-=-|-.||+||.| +|..--++|
T Consensus 496 g~~~~~V~~lGGL~VIgTE------------------RhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 496 GGNPEFVMELGGLHVIGTE------------------RHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred CCCHHHHHHhCCcEEEecc------------------cchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 22 233211 1222222359999999999 887544444
No 175
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.83 E-value=6.7e-06 Score=68.58 Aligned_cols=100 Identities=22% Similarity=0.279 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEee
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (431)
+.+.+...+.+|+.+.|.||+|||||+++..+.-.... ..|. +.+ .-. ..+++..+
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~-~~~--------------------~~i~~~~~- 70 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGI-VTW-GST--------------------VKIGYFEQ- 70 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-CceE-EEE-CCe--------------------EEEEEEcc-
Confidence 34445556779999999999999999888776544322 1221 222 100 13444332
Q ss_pred cCCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHH
Q 014085 98 DDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (431)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~ 144 (431)
.+...+.+..+......+.+++++||- +.+......+.++++++
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 666677777777778889999999994 44444455666666543
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.82 E-value=2.9e-05 Score=68.03 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhH
Q 014085 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~ 70 (431)
.|.+..|+.++.++...+.+++.||.|+|||+++..............+++++-|...
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 3567889999999999999999999999999776555555444444557777766553
No 177
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.82 E-value=3.2e-05 Score=72.37 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=50.0
Q ss_pred HhhccCChHHHHHH----HHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccccc--CCcEEEEeCchhHHHHHHhHHH
Q 014085 8 QQRKSLPIASVEKR----LVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCR--DGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~----~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~--~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
++.++|++++.|.+ +...+..|+++++.||||+||| ++++.+.+...... .+..++++.++.....+....+
T Consensus 2 ~~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 2 LFYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 35677888999998 6667778999999999999999 44444332221111 1236888888877766665554
Q ss_pred HH
Q 014085 80 AE 81 (431)
Q Consensus 80 ~~ 81 (431)
.+
T Consensus 82 ~~ 83 (289)
T smart00488 82 RK 83 (289)
T ss_pred Hh
Confidence 43
No 178
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.82 E-value=3.2e-05 Score=72.37 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=50.0
Q ss_pred HhhccCChHHHHHH----HHHHHhCCCEEEEEcCCCCChh--ccHhHHhhhccccc--CCcEEEEeCchhHHHHHHhHHH
Q 014085 8 QQRKSLPIASVEKR----LVEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCR--DGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~----~~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~--~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
++.++|++++.|.+ +...+..|+++++.||||+||| ++++.+.+...... .+..++++.++.....+....+
T Consensus 2 ~~~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 2 LFYFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHH
Confidence 35677888999998 6667778999999999999999 44444332221111 1236888888877766665554
Q ss_pred HH
Q 014085 80 AE 81 (431)
Q Consensus 80 ~~ 81 (431)
.+
T Consensus 82 ~~ 83 (289)
T smart00489 82 RK 83 (289)
T ss_pred Hh
Confidence 43
No 179
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00011 Score=77.40 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCce-EEEEcCCCCCHHHHhhhhCcCCCCCc
Q 014085 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKL-VTVPIFSSLPSEQQMRVFAPAAAGFR 314 (431)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~-~v~~lhg~~~~~~r~~i~~~f~~g~~ 314 (431)
.........+....... ++++|||++|.+..+.+++.+... .. .....+|..+.. .+++.|+++.-
T Consensus 462 ~~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~---------~~~~~v~~q~~~~~~---~~l~~f~~~~~ 528 (654)
T COG1199 462 ELLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDE---------RSTLPVLTQGEDERE---ELLEKFKASGE 528 (654)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhc---------CccceeeecCCCcHH---HHHHHHHHhcC
Confidence 45555555566555544 569999999999999999999875 22 234445554443 67777776555
Q ss_pred -EEEEecCccccccccCCc--EEEEeCccccce----------eecCCCC--ceeeeeeecCHHHHHHhhcccCCCC--C
Q 014085 315 -KVILATNIAETSVTIPGI--KYVIDPGFVKAR----------LYDPVKG--MESLLVVPISKAQALQRSGRAGREG--P 377 (431)
Q Consensus 315 -~vLvaT~~~~~Gvdip~v--~~VI~~~~~~~~----------~~d~~~~--~~~~~~~p~s~~~~~qr~GR~gR~~--~ 377 (431)
-++|+|..+.+|||+|+= ++||-.|+.--. .|....+ .-.....|.......|-+||.-|.. .
T Consensus 529 ~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~ 608 (654)
T COG1199 529 GLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDR 608 (654)
T ss_pred CeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCc
Confidence 999999999999999754 666655543211 1111111 1112334677788999999999977 4
Q ss_pred cEEEEe
Q 014085 378 GKCFRL 383 (431)
Q Consensus 378 G~~~~l 383 (431)
|.++.+
T Consensus 609 G~ivll 614 (654)
T COG1199 609 GVIVLL 614 (654)
T ss_pred eEEEEe
Confidence 655555
No 180
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.79 E-value=0.00025 Score=74.49 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=86.2
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCC----C
Q 014085 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA----A 311 (431)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~----~ 311 (431)
++.+.+...+..... .++++|||++|.+..+.++..|.... +..+. .+|. ..|..+++.|+ +
T Consensus 518 ~~~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~ll-~Q~~---~~~~~ll~~f~~~~~~ 583 (697)
T PRK11747 518 AHTAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL--------RLMLL-VQGD---QPRQRLLEKHKKRVDE 583 (697)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc--------CCcEE-EeCC---chHHHHHHHHHHHhcc
Confidence 455666666666665 35569999999999999999887531 23333 3554 24566775555 5
Q ss_pred CCcEEEEecCccccccccCC--cEEEEeCccccceeecCC----------CCceee--eeeecCHHHHHHhhcccCCCC-
Q 014085 312 GFRKVILATNIAETSVTIPG--IKYVIDPGFVKARLYDPV----------KGMESL--LVVPISKAQALQRSGRAGREG- 376 (431)
Q Consensus 312 g~~~vLvaT~~~~~Gvdip~--v~~VI~~~~~~~~~~d~~----------~~~~~~--~~~p~s~~~~~qr~GR~gR~~- 376 (431)
++..||++|..+.+|||+|+ .++||-.++.--.--|+. .+...+ ...|.-...+.|-+||.-|..
T Consensus 584 ~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~ 663 (697)
T PRK11747 584 GEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ 663 (697)
T ss_pred CCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC
Confidence 77889999999999999975 788887776421100110 000000 012445567899999999987
Q ss_pred -CcEEEEe
Q 014085 377 -PGKCFRL 383 (431)
Q Consensus 377 -~G~~~~l 383 (431)
.|..+.+
T Consensus 664 D~G~i~il 671 (697)
T PRK11747 664 DRGRVTIL 671 (697)
T ss_pred ceEEEEEE
Confidence 5654444
No 181
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.79 E-value=0.00027 Score=67.44 Aligned_cols=130 Identities=24% Similarity=0.303 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
+++.++++||||.||||.+.-+.+...+..+.+++-++ -..|..+.++.+.+++..+..+.. ..+..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v----------v~~~~e 271 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV----------VYSPKE 271 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE----------ecCHHH
Confidence 47899999999999997777777666533333333333 355566666667778877765211 112222
Q ss_pred hHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccc
Q 014085 106 RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ 185 (431)
Q Consensus 106 ~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 185 (431)
+...+ ..+.++++|.+|=+.. +..-...+.-++.++..-
T Consensus 272 -l~~ai--~~l~~~d~ILVDTaGr-s~~D~~~i~el~~~~~~~------------------------------------- 310 (407)
T COG1419 272 -LAEAI--EALRDCDVILVDTAGR-SQYDKEKIEELKELIDVS------------------------------------- 310 (407)
T ss_pred -HHHHH--HHhhcCCEEEEeCCCC-CccCHHHHHHHHHHHhcc-------------------------------------
Confidence 22122 1356689999999863 333344444444444321
Q ss_pred cCCCCCceEEEEcCCCChHHHHhhhC
Q 014085 186 GRKFAPLKLIIMSASLDARGFSEYFG 211 (431)
Q Consensus 186 ~~~~~~~~~v~lSAT~~~~~l~~~~~ 211 (431)
.+--..+.+|||...+++.+.+.
T Consensus 311 ---~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 311 ---HSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ---ccceEEEEEecCcchHHHHHHHH
Confidence 13345788999997777776554
No 182
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.76 E-value=2.3e-05 Score=67.65 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEee
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (431)
..+.+...+.+|+.+.+.||+|||||+++..+.-..... .|. +.+-- . .+.......+.. .+++..+.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~-i~~~g-~-~~~~~~~~~~~~--------~i~~~~q~ 84 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGR-VRLDG-A-DISQWDPNELGD--------HVGYLPQD 84 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCe-EEECC-E-EcccCCHHHHHh--------heEEECCC
Confidence 445566677799999999999999999887776543222 232 22211 0 000000000111 11111111
Q ss_pred ---------cCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 98 ---------DDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 98 ---------~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
+...+..++.+..+....+.+.+++++|| ++.+......+.++++.+.
T Consensus 85 ~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 85 DELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred CccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH
Confidence 11156666677777777888999999999 4555556667777776653
No 183
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.74 E-value=1.3e-06 Score=82.41 Aligned_cols=126 Identities=20% Similarity=0.241 Sum_probs=78.6
Q ss_pred chhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CCcEEEEeCchhHHHHHHh
Q 014085 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAVTVA 76 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~~~v~v~~p~~~l~~~~~ 76 (431)
+.+++.+..+.|......+.+...+.+|+.+.+.||+||||||++..+.-...... +++.+.-+||.+=-+--++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 46778888999997777888999999999999999999999999988874333221 1233333444221111111
Q ss_pred HHHHHHhCCccCCeEe-----------------------------EeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 77 KRVAEESGVELGQRVG-----------------------------YSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 77 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
..++-|+...+...++ +..+.....+..++++..+++.+..+.+++.+||-
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 1112222222222222 22233344455666667777788899999999994
No 184
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.74 E-value=3.5e-05 Score=67.87 Aligned_cols=143 Identities=20% Similarity=0.165 Sum_probs=84.6
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-------------CCcEEEEeCchh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-------------DGKLIGVTQPRR 69 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-------------~~~~v~v~~p~~ 69 (431)
++++.+.++.|........+...+.+|+...+.||+|+||||.+.+++-...... ...++.++|--|
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 4567788899988888889999999999999999999999999988874433211 012455665444
Q ss_pred HHH-----HHHhHHHHHHhCCcc-------------CCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC--Cc
Q 014085 70 VAA-----VTVAKRVAEESGVEL-------------GQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HE 129 (431)
Q Consensus 70 ~l~-----~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~ 129 (431)
.+. ..+...++...++.. -...++....-...+...+++.-+....+.+++++|+||= -.
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 332 222233333333220 0011111110011122222222222346788999999993 45
Q ss_pred CccchHHHHHHHHHHH
Q 014085 130 RTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (431)
++++..++-+.+.++-
T Consensus 162 DPVN~elLk~~I~~lk 177 (300)
T COG4152 162 DPVNVELLKDAIFELK 177 (300)
T ss_pred ChhhHHHHHHHHHHHH
Confidence 6777777777766654
No 185
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.73 E-value=1.5e-05 Score=77.66 Aligned_cols=144 Identities=18% Similarity=0.172 Sum_probs=84.5
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEEE
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIG 63 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v~ 63 (431)
|+++++.+..+.|+-.++.+.+...+.+|+.+.+.||+||||||++..+.-......+ .+.+.
T Consensus 1 ~~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 1 MPMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred CceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 5677778888888766667778888889999999999999999998777643221100 11233
Q ss_pred EeCchhHH-----HHHHhH-------------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCC
Q 014085 64 VTQPRRVA-----AVTVAK-------------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRY 119 (431)
Q Consensus 64 v~~p~~~l-----~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (431)
+++-...+ +.+... .+.+... .++. .....+.....+..++.+..++..++++.
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le-~vgl-~~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME-RTGV-AQFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHH-HcCC-chhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 33211111 000000 0000000 0000 00111122345566666667777778899
Q ss_pred cEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 120 SAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 120 ~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
+++++|| .+........++.+++++..
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~ 187 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVD 187 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 9999999 56666666778888887753
No 186
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=2.8e-06 Score=73.21 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC--eEeEeE
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ--RVGYSI 95 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 95 (431)
+.+.+...+.+|+.+.+.||+|||||+++..+.-.... ..|. +.+-- . .........+.......... .... .
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~-i~~~g-~-~~~~~~~~~~~~~i~~~~~~~~~~~~-t 91 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGE-ILIDG-V-DLRDLDLESLRKNIAYVPQDPFLFSG-T 91 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCE-EEECC-E-EhhhcCHHHHHhhEEEEcCCchhccc-h
Confidence 44556667789999999999999999988777655332 2232 32211 0 00000000011100000000 0000 0
Q ss_pred eecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHH
Q 014085 96 RFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~ 144 (431)
..+...+..++.+..+......+.+++++|| ++.+......+..++++.
T Consensus 92 ~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 92 IRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142 (171)
T ss_pred HHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh
Confidence 0011145566666666667788899999999 444555556666666654
No 187
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=2.6e-05 Score=67.30 Aligned_cols=122 Identities=22% Similarity=0.257 Sum_probs=69.4
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC-chhHHHHHHhHHHHHHhCCccC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~-p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
.+.++..++.+.+...+.+|+.+.|.||+|||||+++..+.-.... ..|. +.+-- +..... ..+ .
T Consensus 7 ~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~~g~~~~~~~----~~~--------~ 72 (173)
T cd03230 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGE-IKVLGKDIKKEP----EEV--------K 72 (173)
T ss_pred EEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeE-EEECCEEcccch----Hhh--------h
Confidence 3334333445566677789999999999999999988776544322 1232 22211 100000 000 0
Q ss_pred CeEeEeEeecC-----------CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 89 QRVGYSIRFDD-----------RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 89 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
..+++..+... ..+..++.+..++.....+.+++++|| ++.+......+.++++++.
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 11222221111 045555666666777788899999999 4455555667777777654
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.72 E-value=0.00032 Score=57.97 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHhC--CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 18 VEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 18 ~Q~~~~~~~~~--g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
...++...+.. +..+++.||+|+|||+++..+....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34445555555 7899999999999998876666554
No 189
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.72 E-value=2e-05 Score=70.96 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=84.6
Q ss_pred chhhHHHhhccCChH---------HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC-chhH-
Q 014085 2 PRQKILQQRKSLPIA---------SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRV- 70 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~---------~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~-p~~~- 70 (431)
+++++.++.+.|+.. .....+...+.+|+.+.++|++||||||+...++....... | .+++-- +...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G-~i~f~g~~i~~~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-G-EILFEGKDITKL 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-c-eEEEcCcchhhc
Confidence 355566666666543 23345677788999999999999999999888776654332 2 232221 0000
Q ss_pred HHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecCCc--CccchHHHHHHHHHHHHh
Q 014085 71 AAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHE--RTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 71 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~--~~~~~~~~~~~~~~~~~~ 147 (431)
......+++.+... .++....+..+.....+..++.+..++..+.-+.+++|.||.-. ...-....+++++.+...
T Consensus 81 ~~~~~~~~v~elL~-~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~ 158 (268)
T COG4608 81 SKEERRERVLELLE-KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE 158 (268)
T ss_pred chhHHHHHHHHHHH-HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH
Confidence 01111222222221 12222223344556677777888777888888899999999632 223335677777777664
No 190
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.71 E-value=2.5e-05 Score=73.22 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=90.6
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC----------------CcEEEEe
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----------------GKLIGVT 65 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----------------~~~v~v~ 65 (431)
.+++.+..+.+. -..+.+.+...+.+|+.+.+.||+||||||++..+.-......+ .+.+.++
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 455677888888 57788889999999999999999999999998877743322110 1123333
Q ss_pred C-----chhHHHHHHhHHHHHHhCCc----------cCCeEeEe---EeecCCCChhHhHHHHhcccCCCCCcEEEEec-
Q 014085 66 Q-----PRRVAAVTVAKRVAEESGVE----------LGQRVGYS---IRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE- 126 (431)
Q Consensus 66 ~-----p~~~l~~~~~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE- 126 (431)
+ +....+.+..+.++...+.. .-...+.. ...-...+...+.+..++..++.+.+++++||
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 2 23334444444444444321 00111111 11123356666666667777888999999999
Q ss_pred -CCcCccchHHHHHHHHHHHH
Q 014085 127 -AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 127 -ah~~~~~~~~~~~~~~~~~~ 146 (431)
...++.....++++++.+..
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 164 TSGLDPESRREIWELLRELAK 184 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHh
Confidence 44556666777778777754
No 191
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.71 E-value=0.00013 Score=62.49 Aligned_cols=115 Identities=22% Similarity=0.233 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC------CcEEEEeCchhHHHHHHhHHHHHHhCCccCCe
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------GKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~------~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (431)
++.+.+...+.+|+.+.+.||+|||||+++..+.-......+ ...+.++++...+. ...+.+.....
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~---~~tv~~nl~~~---- 87 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP---LGTLREQLIYP---- 87 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc---cccHHHHhhcc----
Confidence 344556677789999999999999999988777654332211 12334444322111 00111111100
Q ss_pred EeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHH
Q 014085 91 VGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~ 144 (431)
.....+..++.+..++.....+.+++++|| .+.+......+..++++.
T Consensus 88 ------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 137 (166)
T cd03223 88 ------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL 137 (166)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence 123466677777777777888999999999 455555556666666553
No 192
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.0003 Score=67.49 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=49.6
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
.+|+.++++||||+||||++..+........+...+.++. +.+....++.+.+.+..+..+.. ....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~-----------~~~~ 203 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA-----------VKDG 203 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe-----------cCCc
Confidence 3578999999999999988877765543222223444443 23334445555555555532110 0011
Q ss_pred HhHHHHhcccCCCCCcEEEEecCC
Q 014085 105 TRIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 105 ~~~~~~~~~~~~~~~~~lViDEah 128 (431)
..+...+. .+.+.++++||++-
T Consensus 204 ~~l~~~l~--~l~~~DlVLIDTaG 225 (374)
T PRK14722 204 GDLQLALA--ELRNKHMVLIDTIG 225 (374)
T ss_pred ccHHHHHH--HhcCCCEEEEcCCC
Confidence 11122222 24557999999986
No 193
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.71 E-value=6.7e-05 Score=70.68 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhh---hcccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLF---HAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~---~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
..+..++.-..|+|||..+..++. ..........++|+.|...+ .+....+.++.
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~ 81 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWF 81 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhcccc
Confidence 445678888999999954444433 12111111246666676544 45555566665
No 194
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.70 E-value=2.8e-06 Score=86.49 Aligned_cols=361 Identities=10% Similarity=-0.145 Sum_probs=198.7
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCC---cEEEEeCchhHHHHHHhHHHHHHhCCc
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG---KLIGVTQPRRVAAVTVAKRVAEESGVE 86 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~---~~v~v~~p~~~l~~~~~~~~~~~~~~~ 86 (431)
+.-.+.+.+-+.++.++..+.++++.+-+|||||++.+..++.......+ ..++...|+...+.-......-+.+..
T Consensus 402 tgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvg 481 (1282)
T KOG0921|consen 402 TGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVG 481 (1282)
T ss_pred ccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccc
Confidence 33346778889999999999999999999999998888887654322111 112222333332221111111111111
Q ss_pred cCCeEeEeEeecCC---------CChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCC
Q 014085 87 LGQRVGYSIRFDDR---------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSN 157 (431)
Q Consensus 87 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (431)
+....++....... ....+.....+.. .+-.....+.||.|+.+.++++++.++...
T Consensus 482 vllr~~e~glrg~sh~i~deiherdv~~dfll~~lr-~m~~ty~dl~v~lmsatIdTd~f~~~f~~~------------- 547 (1282)
T KOG0921|consen 482 VLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLR-EMISTYRDLRVVLMSATIDTDLFTNFFSSI------------- 547 (1282)
T ss_pred hhhhhhhhcccccccccchhhhhhccchHHHHHHHH-hhhccchhhhhhhhhcccchhhhhhhhccc-------------
Confidence 11111111110000 0011111111111 122344567899999999999999887753
Q ss_pred CCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCce-------------ee
Q 014085 158 GNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQ-------------FP 224 (431)
Q Consensus 158 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~-------------~~ 224 (431)
+++.++++|.+...+-...-+.....+.++. .+
T Consensus 548 ----------------------------------p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~ 593 (1282)
T KOG0921|consen 548 ----------------------------------PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEE 593 (1282)
T ss_pred ----------------------------------cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCch
Confidence 3457778888766654221111111111000 00
Q ss_pred e-------eE----------------eeecCCCcchHHHHHHHHHH------HhhcCCCCcEEEEcCCHHHHHHHHHHHH
Q 014085 225 V-------EI----------------LYTLYPEPDYLDATLITIFQ------VHLDEAPGDILVFLTGQEEIESVERLVQ 275 (431)
Q Consensus 225 ~-------~~----------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~lVF~~s~~~~~~l~~~l~ 275 (431)
. .. ...........+.....+.. +..-.++...|+|...+..-......++
T Consensus 594 ~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~ 673 (1282)
T KOG0921|consen 594 VDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQAN 673 (1282)
T ss_pred hhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccch
Confidence 0 00 00011123333333222111 1223456678888888776666665555
Q ss_pred HHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceee
Q 014085 276 ERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESL 355 (431)
Q Consensus 276 ~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~ 355 (431)
+.- . ......-+...|......+.+.+.+-...+.+.+.-.|.....-+-..++-+|++++--.+..+-........
T Consensus 674 ~y~--i-lp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~skt 750 (1282)
T KOG0921|consen 674 KYE--I-LPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKT 750 (1282)
T ss_pred hcc--c-ccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeeccccc
Confidence 431 0 0111233445577777777777777777777777666666544444447888888887777766555554444
Q ss_pred eeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhhcCcCCCCCceeccCchHHHHHHHHcCCCCCc
Q 014085 356 LVVPISKAQALQRSGRAGREGPGKCFRLYPENEFDKLEDSTKPEIKRCNLSNVILQLKALGVDDII 421 (431)
Q Consensus 356 ~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~ 421 (431)
...+.+...--||.|||+|-..+.||..+++....++.-...+|+.+......+..++-+-.+.+.
T Consensus 751 n~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~ 816 (1282)
T KOG0921|consen 751 NLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQ 816 (1282)
T ss_pred chHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccC
Confidence 445555566788999999988999999999888888888888888776655444444444443333
No 195
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.68 E-value=0.00033 Score=74.01 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=101.8
Q ss_pred eEEEEcCCC-ChHHHHhhhCCCceEE--e----cCce------------eeeeEeeecCCCcchHHHHHHHHHHHhhcCC
Q 014085 193 KLIIMSASL-DARGFSEYFGCAKAVH--V----QGRQ------------FPVEILYTLYPEPDYLDATLITIFQVHLDEA 253 (431)
Q Consensus 193 ~~v~lSAT~-~~~~l~~~~~~~~~~~--~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (431)
.+|++|||+ +.+.+...+|...... . +... .++...|......++...+...+.+.....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~- 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII- 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC-
Confidence 578999999 6677777776321111 0 1000 011112221222345555555565655544
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHH--hcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCC----CCcEEEEec--Ccccc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERL--LQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA----GFRKVILAT--NIAET 325 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~--~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~----g~~~vLvaT--~~~~~ 325 (431)
++++|||++|...-+.+++.+.+.. ..... ...+.. -+ -...++..+++.|++ |...||+|+ ..+.+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~---~k~i~~-E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEK---KKLIFV-ET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhc---CCCEEE-eC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 6899999999999998888776521 00000 112221 11 111467788888853 466799999 78999
Q ss_pred ccccCC--cEEEEeCccccceeecC-----------CC--CceeeeeeecCHHHHHHhhcccCCCCCcE
Q 014085 326 SVTIPG--IKYVIDPGFVKARLYDP-----------VK--GMESLLVVPISKAQALQRSGRAGREGPGK 379 (431)
Q Consensus 326 Gvdip~--v~~VI~~~~~~~~~~d~-----------~~--~~~~~~~~p~s~~~~~qr~GR~gR~~~G~ 379 (431)
|||+++ .++||-.|+.-....|+ .. +....-....-.....|-+||+-|...-.
T Consensus 597 GIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred ccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCce
Confidence 999976 68888888754111110 00 00000001122355789999999988433
No 196
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.67 E-value=0.00027 Score=60.96 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=61.5
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCCh
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST 103 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (431)
..+.+|+.+.+.||+||||||++..+.-.... ..|. +.+-- ..+++..+.. ..+.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~-i~~~g----------------------~~i~~~~q~~-~LSg 74 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDN-DEWDG----------------------ITPVYKPQYI-DLSG 74 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcE-EEECC----------------------EEEEEEcccC-CCCH
Confidence 46789999999999999999998776544322 1222 22210 0123322211 1667
Q ss_pred hHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHH
Q 014085 104 STRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~ 145 (431)
.++.+..++.....+.+++++||- +........+.+.+++..
T Consensus 75 Gq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 75 GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 777777777778888999999994 444445566666666553
No 197
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.66 E-value=6.3e-05 Score=66.22 Aligned_cols=52 Identities=27% Similarity=0.265 Sum_probs=45.2
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
.+++.+..+.+.-+.+...+...+.+|+.+.|.||+|||||+++..++-...
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 5677788888988889999999999999999999999999998877765443
No 198
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=2.9e-06 Score=73.61 Aligned_cols=127 Identities=18% Similarity=0.180 Sum_probs=70.5
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC-chhHHHHHHhHHHHHHhCCcc
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~-p~~~l~~~~~~~~~~~~~~~~ 87 (431)
..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.... ..|. +.+-- +..... +.......
T Consensus 6 l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~-i~~~g~~~~~~~-~~~~~~~~------ 76 (178)
T cd03229 6 VSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGS-ILIDGEDLTDLE-DELPPLRR------ 76 (178)
T ss_pred EEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceE-EEECCEEccccc-hhHHHHhh------
Confidence 33444333445556667789999999999999999988777644322 1232 22211 000000 00000000
Q ss_pred CCeEeEeEeec----------C---CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 88 GQRVGYSIRFD----------D---RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 88 ~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
.+++..+.. . ..+..++.+..+......+.+++++|| ++.+......+.+++++...
T Consensus 77 --~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~ 148 (178)
T cd03229 77 --RIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA 148 (178)
T ss_pred --cEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 111111100 0 055666677777777888999999999 44455556777777776643
No 199
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.65 E-value=0.00015 Score=74.28 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc---ccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF---CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~---~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
+.|+.++..+..++..+|+|+.|+||||++..++..... ...+.++.++.|+--++....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 679999999999999999999999999876655533211 11124688889988888776665543
No 200
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.65 E-value=5.5e-05 Score=71.51 Aligned_cols=143 Identities=15% Similarity=0.089 Sum_probs=82.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC----------------CcEEEEeC
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----------------GKLIGVTQ 66 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----------------~~~v~v~~ 66 (431)
++++.+..+.|+.....+.+...+.+|+.+.+.||+||||||++..+.-......+ .+.+.+++
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 56677777877655667778888889999999999999999998877643221110 11233333
Q ss_pred chh-----HHHHHHhHHHHHHhCCc----------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--
Q 014085 67 PRR-----VAAVTVAKRVAEESGVE----------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE-- 126 (431)
Q Consensus 67 p~~-----~l~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE-- 126 (431)
... ..+.+....+....+.. .-...+. ........+...+.+..++...+.+.+++++||
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 111 11111111111111100 0000111 111123455566666667777788999999999
Q ss_pred CCcCccchHHHHHHHHHHH
Q 014085 127 AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 127 ah~~~~~~~~~~~~~~~~~ 145 (431)
.+.+......+.++++++.
T Consensus 167 ~gLD~~~~~~l~~~l~~l~ 185 (306)
T PRK13537 167 TGLDPQARHLMWERLRSLL 185 (306)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 4555666677777777653
No 201
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.65 E-value=4e-05 Score=70.39 Aligned_cols=51 Identities=27% Similarity=0.351 Sum_probs=42.0
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
|+++++.+..+.++..++-+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 1 m~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 1 MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred CCcEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 566777788877765566777888888999999999999999998877763
No 202
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.64 E-value=0.00012 Score=66.09 Aligned_cols=67 Identities=22% Similarity=0.356 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHhCCCE-EEEEcCCCCChhccHhHHhhhc------ccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 15 IASVEKRLVEEVRKNDI-LIIVGETGSGKTTQLPQFLFHA------GFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 15 ~~~~Q~~~~~~~~~g~~-~vi~apTGsGKT~~~~~~~~~~------~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
+.+.|.+++..+..... .+|.||+|+|||+++..++... .....+..++++.|+-.+++...+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56789999999999887 9999999999997666666554 1234567899999999999888887765
No 203
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.64 E-value=2e-06 Score=75.20 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=85.4
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHH
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
++++++.+....|...++...+...+.+|+.+.+.|++|+||||++..+.-..... .| .+.+- .+.+.
T Consensus 1 ~~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~-~G-~I~~~----------G~dit 68 (237)
T COG0410 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SG-RIIFD----------GEDIT 68 (237)
T ss_pred CCceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-Ce-eEEEC----------CeecC
Confidence 45677778888888888888899999999999999999999999987665443221 12 12221 11111
Q ss_pred HHhCC-ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCC
Q 014085 81 EESGV-ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (431)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (431)
..+.. ....-+++..+....++..+.-.++.......+- ++.. ..+.+....++.++...+++..+..|++
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~-----~~~~--~~~~e~v~~lFP~Lker~~~~aG~LSGG 140 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD-----KEAQ--ERDLEEVYELFPRLKERRNQRAGTLSGG 140 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc-----cccc--cccHHHHHHHChhHHHHhcCcccCCChH
Confidence 11100 1123455666666666666666655543222110 1221 1225677888898888887777766666
No 204
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.64 E-value=2.2e-06 Score=74.34 Aligned_cols=123 Identities=23% Similarity=0.263 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC--eEeEe
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ--RVGYS 94 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~--~~~~~ 94 (431)
++.+.+...+.+|+.+.+.||+|||||+++..+.-.... ..|. +.+-- . .+... ...+....+..... .....
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~-i~~~g-~-~~~~~-~~~~~~~i~~~~q~~~~~~~t 90 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGE-ITLDG-V-PVSDL-EKALSSLISVLNQRPYLFDTT 90 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCE-EEECC-E-EHHHH-HHHHHhhEEEEccCCeeeccc
Confidence 344556667789999999999999999988777654332 2232 32211 1 11110 11111111100000 00000
Q ss_pred Ee--ecCCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHH
Q 014085 95 IR--FDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (431)
Q Consensus 95 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~ 144 (431)
.. .....+..++.+..++.....+.+++++||- +.+......+.+++++.
T Consensus 91 v~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 91 LRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV 144 (178)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 00 0223455666667777778889999999993 44445556666666654
No 205
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.64 E-value=2.7e-05 Score=66.62 Aligned_cols=122 Identities=21% Similarity=0.282 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC--ccccccccC
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIP 330 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~--~~~~Gvdip 330 (431)
.++++|||++|.+..+.+...+.+.... .++.+.. . ...++..+++.|+++.-.||+|+. .+.+|+|+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~~-q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVFV-Q---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEEE-S---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceeee-c---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3689999999999999999988664210 0222322 2 256788899999999999999999 999999998
Q ss_pred C--cEEEEeCccccceeecCC-------------CCceeeeeeecCHHHHHHhhcccCCCCCcEEEEee
Q 014085 331 G--IKYVIDPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREGPGKCFRLY 384 (431)
Q Consensus 331 ~--v~~VI~~~~~~~~~~d~~-------------~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~ 384 (431)
+ .++||-.|+.--..-|+. .+. .....|.-.....|-+||+-|..+-.+..++
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l 146 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPF-RDWYLPPAIRKLKQAIGRLIRSEDDYGVIIL 146 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCH-HHHTHHHHHHHHHHHHHCC--STT-EEEEEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccch-hhHhhHHHHHHHhhhcCcceeccCCcEEEEE
Confidence 5 778887776431111110 000 0111244456678999999998854444443
No 206
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.0011 Score=63.61 Aligned_cols=93 Identities=22% Similarity=0.305 Sum_probs=47.1
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
+.++++||||+||||++..+..... ..+..+.++. +.+..+.++...++...+..+ .. . .....+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv------~v----~-~d~~~L 308 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV------IA----V-RDEAAM 308 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE------Ee----c-CCHHHH
Confidence 5789999999999988766665432 2233444443 444333333333333333221 00 0 112222
Q ss_pred HHHhccc-CCCCCcEEEEecCCcCccchH
Q 014085 108 KEALLDP-YLSRYSAIIVDEAHERTVHTD 135 (431)
Q Consensus 108 ~~~~~~~-~~~~~~~lViDEah~~~~~~~ 135 (431)
...+... ...+++++++|-+-.......
T Consensus 309 ~~aL~~lk~~~~~DvVLIDTaGRs~kd~~ 337 (436)
T PRK11889 309 TRALTYFKEEARVDYILIDTAGKNYRASE 337 (436)
T ss_pred HHHHHHHHhccCCCEEEEeCccccCcCHH
Confidence 2233211 123589999999864443333
No 207
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.63 E-value=0.00039 Score=59.86 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=64.3
Q ss_pred HHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-C-------CcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEe
Q 014085 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-D-------GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (431)
Q Consensus 21 ~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-~-------~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (431)
.+...+.+|+.+.+.||+||||||++..++...+... . ...+.++.. ..+....+....
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q---------~~~l~~~~L~~~---- 79 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ---------LQFLIDVGLGYL---- 79 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH---------HHHHHHcCCCcc----
Confidence 3455677899999999999999999876642211100 0 001222211 112222222100
Q ss_pred EeEeecCCCChhHhHHHHhcccCCCC--CcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 93 YSIRFDDRTSTSTRIKEALLDPYLSR--YSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
.........+...+.+..+......+ .+++++|| .+........+...++++.
T Consensus 80 ~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~ 136 (176)
T cd03238 80 TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136 (176)
T ss_pred ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 01112234566667777777777888 99999999 4555555666777776653
No 208
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.63 E-value=2.3e-05 Score=71.87 Aligned_cols=142 Identities=16% Similarity=0.123 Sum_probs=79.0
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC------CcEEEEeCchhHHHH---
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------GKLIGVTQPRRVAAV--- 73 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~------~~~v~v~~p~~~l~~--- 73 (431)
++++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++....+..
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~ 83 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP 83 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccC
Confidence 56677777777655555666677889999999999999999998777644221111 112333332211100
Q ss_pred -HHhHH-----------HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHH
Q 014085 74 -TVAKR-----------VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLG 139 (431)
Q Consensus 74 -~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~ 139 (431)
..... +..... .++.. ..........+..++.+..++...+.+.+++++|| .+.+......+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~-~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 161 (251)
T PRK09544 84 LTVNRFLRLRPGTKKEDILPALK-RVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 (251)
T ss_pred hhHHHHHhccccccHHHHHHHHH-HcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 00000 000000 00000 00011223355666666666777788899999999 4555555677777
Q ss_pred HHHHHHH
Q 014085 140 LLKKVQN 146 (431)
Q Consensus 140 ~~~~~~~ 146 (431)
+++++..
T Consensus 162 ~L~~~~~ 168 (251)
T PRK09544 162 LIDQLRR 168 (251)
T ss_pred HHHHHHH
Confidence 7776543
No 209
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.61 E-value=7e-05 Score=65.87 Aligned_cols=135 Identities=15% Similarity=0.167 Sum_probs=71.2
Q ss_pred hHHHhhccCCh------HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc--ccccCCcEEEEeC-chhHHHHHH
Q 014085 5 KILQQRKSLPI------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA--GFCRDGKLIGVTQ-PRRVAAVTV 75 (431)
Q Consensus 5 ~~~~~~~~~~~------~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~--~~~~~~~~v~v~~-p~~~l~~~~ 75 (431)
++.+..+.++. .++.+.+...+.+|+.+.|.||+|||||+++..+.-.. .. ..|. +.+-- +... ...
T Consensus 5 ~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-~~G~-i~~~g~~~~~--~~~ 80 (194)
T cd03213 5 SFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-VSGE-VLINGRPLDK--RSF 80 (194)
T ss_pred EEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-CceE-EEECCEeCch--Hhh
Confidence 34444555543 45677778888899999999999999999887776544 22 1222 22210 0000 000
Q ss_pred hHHHHHHhCCc---cCCeEe----EeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHH
Q 014085 76 AKRVAEESGVE---LGQRVG----YSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (431)
Q Consensus 76 ~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~ 144 (431)
...+...+... ....+. +... ....+..++.+..++.....+.+++++||- +.+......+..+++++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~-~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 157 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAK-LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL 157 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHH-hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 00000000000 000000 0000 003455666666666677888999999994 34445556666666654
No 210
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=5.3e-05 Score=69.16 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=79.7
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEEE
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIG 63 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v~ 63 (431)
|..+++.+..+.++..++-+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred CceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4455666666666555556677777889999999999999999988777643221100 01233
Q ss_pred EeCchhHHHH-HHhHHHH--------------HHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--
Q 014085 64 VTQPRRVAAV-TVAKRVA--------------EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE-- 126 (431)
Q Consensus 64 v~~p~~~l~~-~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE-- 126 (431)
+++....+.. ...+.+. .... .++.............+..++.+..++.....+.+++++||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS-IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHH-HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3332211110 0111110 0000 00000001111223356666666667777788999999999
Q ss_pred CCcCccchHHHHHHHHHHHH
Q 014085 127 AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 127 ah~~~~~~~~~~~~~~~~~~ 146 (431)
.+.+......+..+++++..
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~ 179 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKN 179 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 45555556677777776543
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.60 E-value=3e-05 Score=67.38 Aligned_cols=122 Identities=22% Similarity=0.238 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC-ch-----hHHHHHH--hHHHHHHhCCccC
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PR-----RVAAVTV--AKRVAEESGVELG 88 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~-p~-----~~l~~~~--~~~~~~~~~~~~~ 88 (431)
++.+.+...+.+|+.+.+.||+|||||+++..+.-.... ..|. +.+-- +. ......+ ..++.+..+...
T Consensus 13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~- 89 (180)
T cd03214 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLAH- 89 (180)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHh-
Confidence 344455566779999999999999999988777654322 2232 32211 10 0000000 000222222210
Q ss_pred CeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 89 QRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
.........+...+.+..+......+.+++++|| .+.+......+..+++++.
T Consensus 90 ----~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~ 144 (180)
T cd03214 90 ----LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA 144 (180)
T ss_pred ----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 0111123456677777777777888999999999 4555555666777776653
No 212
>PRK06526 transposase; Provisional
Probab=97.59 E-value=0.00037 Score=63.76 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
+..+++++++||+|+|||+++..+...... .+..+++..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~--~g~~v~f~t 133 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQ--AGHRVLFAT 133 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHH--CCCchhhhh
Confidence 446789999999999999777655543322 244455543
No 213
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.59 E-value=5e-05 Score=70.45 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=41.9
Q ss_pred CchhhHHHhhccCCh---------HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPI---------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~---------~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++++.+..+.++. .++-+.+...+.+|+.++|.||+|||||+++..+.-.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 667788888887762 4566777788889999999999999999988777643
No 214
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.58 E-value=0.015 Score=61.78 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=47.2
Q ss_pred cCChHHHHHHHHHHHhC-CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHh
Q 014085 12 SLPIASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 76 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~-g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~ 76 (431)
.+.+.+-|.+++..+.. ++.++|+|+.|+|||+++..+..... ..+..+.++.|+-.++....
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~--~~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWE--AAGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHH
Confidence 45678899999999887 47889999999999988776653321 12567888888877765543
No 215
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.57 E-value=0.00014 Score=63.35 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=68.1
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC-chhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-PRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~-p~~~l~~~~~~~~~~~ 82 (431)
+++.+..+.+ +.+.+...+.+|+.+.+.||+||||||++..+.-..... .|. +.+-- +...... .....
T Consensus 5 l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~-i~~~g~~~~~~~~--~~~~~-- 74 (182)
T cd03215 5 LEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGE-ITLDGKPVTRRSP--RDAIR-- 74 (182)
T ss_pred EEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-Cce-EEECCEECCccCH--HHHHh--
Confidence 4444455444 344556667799999999999999999887776543321 222 22210 0000000 00000
Q ss_pred hCCccCCeEeEeEee------------------cCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHH
Q 014085 83 SGVELGQRVGYSIRF------------------DDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLK 142 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~ 142 (431)
..+++..+. ....+..++.+..++...+.+.+++++|| ++.+......+..+++
T Consensus 75 ------~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 148 (182)
T cd03215 75 ------AGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR 148 (182)
T ss_pred ------CCeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHH
Confidence 001111100 00044555555666667788999999999 4445555566667766
Q ss_pred HHH
Q 014085 143 KVQ 145 (431)
Q Consensus 143 ~~~ 145 (431)
+..
T Consensus 149 ~~~ 151 (182)
T cd03215 149 ELA 151 (182)
T ss_pred HHH
Confidence 653
No 216
>PRK14974 cell division protein FtsY; Provisional
Probab=97.57 E-value=0.0012 Score=62.74 Aligned_cols=99 Identities=17% Similarity=0.305 Sum_probs=49.5
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
..++++||+|+||||.+..+..... ..+..+.++. +.+..+.++...++...+..+.. . .........+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~--~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~------~-~~g~dp~~v~ 211 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLK--KNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK------H-KYGADPAAVA 211 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec------c-cCCCCHHHHH
Confidence 4688999999999987766654322 2233454443 23344433334444444432110 0 0011111112
Q ss_pred HHHhcccCCCCCcEEEEecCCcCccchHHH
Q 014085 108 KEALLDPYLSRYSAIIVDEAHERTVHTDVL 137 (431)
Q Consensus 108 ~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 137 (431)
...+......+.+++++|.++.......++
T Consensus 212 ~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm 241 (336)
T PRK14974 212 YDAIEHAKARGIDVVLIDTAGRMHTDANLM 241 (336)
T ss_pred HHHHHHHHhCCCCEEEEECCCccCCcHHHH
Confidence 222222223468899999998654444443
No 217
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.57 E-value=5.5e-05 Score=72.42 Aligned_cols=143 Identities=15% Similarity=0.071 Sum_probs=81.8
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC----------------CcEEEEeC
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----------------GKLIGVTQ 66 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----------------~~~v~v~~ 66 (431)
++++.+..+.|+.....+.+...+.+|+.+.+.||+||||||++..+.-......+ ...+.+++
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 56777777877766666777788889999999999999999998877643221110 11233333
Q ss_pred chh-----HHHHHHhHHHHHHhCCc----------cCCeEeEe---EeecCCCChhHhHHHHhcccCCCCCcEEEEec--
Q 014085 67 PRR-----VAAVTVAKRVAEESGVE----------LGQRVGYS---IRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE-- 126 (431)
Q Consensus 67 p~~-----~l~~~~~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE-- 126 (431)
... ..+.+....+....+.. .-...+.. .......+...+.+..++...+.+.+++++||
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 111 11111111111111100 00001110 11112345556666666667788999999999
Q ss_pred CCcCccchHHHHHHHHHHH
Q 014085 127 AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 127 ah~~~~~~~~~~~~~~~~~ 145 (431)
...+......++++++++.
T Consensus 201 ~gLD~~~r~~l~~~l~~l~ 219 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLL 219 (340)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4455666677777777764
No 218
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.0012 Score=65.06 Aligned_cols=89 Identities=25% Similarity=0.338 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
.|+.++++||||+||||++..++.......++.++.++. |.+..+.++...+....+..+ . .... ..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------~----~~~~-~~ 288 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------E----VVYD-PK 288 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------E----ccCC-HH
Confidence 467899999999999987766655433112233444443 333333344444444433221 0 0011 12
Q ss_pred hHHHHhcccCCCCCcEEEEecCCc
Q 014085 106 RIKEALLDPYLSRYSAIIVDEAHE 129 (431)
Q Consensus 106 ~~~~~~~~~~~~~~~~lViDEah~ 129 (431)
.+...+. .+.++++++||.+..
T Consensus 289 ~l~~~l~--~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 289 ELAKALE--QLRDCDVILIDTAGR 310 (424)
T ss_pred hHHHHHH--HhCCCCEEEEeCCCC
Confidence 2222222 234689999999854
No 219
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=0.00011 Score=66.58 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=37.0
Q ss_pred hhHHHhhccCChH----HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPIA----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~~----~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++-. ++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555556543 566677778889999999999999999988777643
No 220
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=9.7e-05 Score=67.41 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=42.3
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|.++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CceEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5667777777777655566777788889999999999999999988777654
No 221
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=4e-05 Score=73.85 Aligned_cols=144 Identities=19% Similarity=0.169 Sum_probs=83.0
Q ss_pred CchhhHHHhhccC-ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----C----------cEEEE
Q 014085 1 MPRQKILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----G----------KLIGV 64 (431)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----~----------~~v~v 64 (431)
|.++++.+..+.| .-....+.+...+.+|+.+.+.||+||||||++..+.-......+ + +.+.+
T Consensus 1 m~~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred CCEEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5567777777777 444556677788889999999999999999998887743221100 0 12222
Q ss_pred eCchhH-----HHHHHhH---------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEE
Q 014085 65 TQPRRV-----AAVTVAK---------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIV 124 (431)
Q Consensus 65 ~~p~~~-----l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVi 124 (431)
+..... .+.+... ++.+... .++. ..+..+.....+..++.+..++..+..+.+++++
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~-~~gL-~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLL 158 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAAR-ILEL-EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLF 158 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH-HcCC-hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 221111 1111100 0000000 0011 1112223345677777788888888999999999
Q ss_pred ecC--CcCccchHHHHHHHHHHHH
Q 014085 125 DEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 125 DEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
||- +.+......+...++++..
T Consensus 159 DEP~s~LD~~~r~~l~~~l~~l~~ 182 (356)
T PRK11650 159 DEPLSNLDAKLRVQMRLEIQRLHR 182 (356)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHH
Confidence 994 4444555666677766544
No 222
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=3.8e-05 Score=73.80 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=84.0
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------CcEEEEe
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---------------GKLIGVT 65 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---------------~~~v~v~ 65 (431)
|+++++.+..+.+....+.+.+...+.+|+.+.+.||+||||||++..+.-......+ .+.+.++
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4567777777777655555667778889999999999999999998877643221110 1122232
Q ss_pred CchhH------HHHHHh--------------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEe
Q 014085 66 QPRRV------AAVTVA--------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVD 125 (431)
Q Consensus 66 ~p~~~------l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViD 125 (431)
..... ..+.+. +++.+... .++. .++..+.....+..++.+..++.....+.+++++|
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~-~~gl-~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD 161 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE-LVDL-AGFEDRYVDQISGGQQQRVALARALILKPKVLLFD 161 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHH-HcCC-chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 21111 111110 00000000 0011 12223334556777788888888888999999999
Q ss_pred c--CCcCccchHHHHHHHHHHHH
Q 014085 126 E--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 126 E--ah~~~~~~~~~~~~~~~~~~ 146 (431)
| ...+......+...++++..
T Consensus 162 EP~s~LD~~~r~~l~~~l~~l~~ 184 (351)
T PRK11432 162 EPLSNLDANLRRSMREKIRELQQ 184 (351)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH
Confidence 9 34445555666667666644
No 223
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.55 E-value=4.5e-05 Score=73.99 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=82.9
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------CcEEEEe
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---------------GKLIGVT 65 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---------------~~~v~v~ 65 (431)
|..+++.+..+.++-..+.+.+...+.+|+.+.|.||+||||||++..+.-......+ .+.+.++
T Consensus 1 m~~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 1 MASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred CCEEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 5566777777777654555667778889999999999999999998777643221100 0113333
Q ss_pred CchhH-----HHHHHhH---------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEe
Q 014085 66 QPRRV-----AAVTVAK---------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVD 125 (431)
Q Consensus 66 ~p~~~-----l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViD 125 (431)
+.... .+.+... ++..... .++. .....+.....+..++.+..++..+..+.+++++|
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~-~lgL-~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE-VLQL-AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHH-HcCC-hhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 21111 1111100 0000000 0111 01111223346777777777888888899999999
Q ss_pred c--CCcCccchHHHHHHHHHHHH
Q 014085 126 E--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 126 E--ah~~~~~~~~~~~~~~~~~~ 146 (431)
| .+.+......+..+++++..
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH
Confidence 9 44555556667777776654
No 224
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.54 E-value=0.00033 Score=71.91 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.+.|++++.....+...+|+|++|+||||++..++..... ......+.++.|+--++....+.+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999877665543221 11235788889999888777776543
No 225
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.54 E-value=0.00011 Score=66.39 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=40.2
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46666777777655667778888889999999999999999988777643
No 226
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.54 E-value=0.00015 Score=64.83 Aligned_cols=45 Identities=31% Similarity=0.319 Sum_probs=34.0
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++-.++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 4 ~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 4 DLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred cceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 344444434456667778889999999999999999988776643
No 227
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=5.8e-05 Score=76.37 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=40.0
Q ss_pred hhHHHhhccCChH---HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 4 QKILQQRKSLPIA---SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 4 ~~~~~~~~~~~~~---~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
++..+..+.||-+ ++.+.+...+.+|+.+.++||+|+||||++.+++....
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3445556667655 57788999999999999999999999998877765443
No 228
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.53 E-value=0.00087 Score=70.64 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=49.5
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHh
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVA 76 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~ 76 (431)
..+.+.+-|++++..+..++.++|+|+.|+|||+++..++.......+...++++.|+--++....
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 456788999999999999999999999999999887666543322211156788888877775443
No 229
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.53 E-value=7.8e-05 Score=66.16 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=36.3
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 3 EARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444555555544556677778889999999999999999998777644
No 230
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.0001 Score=65.83 Aligned_cols=140 Identities=24% Similarity=0.220 Sum_probs=76.3
Q ss_pred HHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEeCchhHH
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVTQPRRVA 71 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~~p~~~l 71 (431)
.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-...... ....+.+++....+
T Consensus 4 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 83 (213)
T cd03259 4 KGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83 (213)
T ss_pred eeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhh
Confidence 344455544456667777888999999999999999998877764321110 01123333322111
Q ss_pred HH--HHhHHHH---HHhCC----------ccCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCc
Q 014085 72 AV--TVAKRVA---EESGV----------ELGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERT 131 (431)
Q Consensus 72 ~~--~~~~~~~---~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~ 131 (431)
.. ...+.+. ...+. ..-...+. ........+..++.+..++.....+.+++++|| ++.+.
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~ 163 (213)
T cd03259 84 FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDA 163 (213)
T ss_pred ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 10 0011110 00000 00000111 111123456666677777777788999999999 45555
Q ss_pred cchHHHHHHHHHHHH
Q 014085 132 VHTDVLLGLLKKVQN 146 (431)
Q Consensus 132 ~~~~~~~~~~~~~~~ 146 (431)
.....+..+++++..
T Consensus 164 ~~~~~l~~~l~~~~~ 178 (213)
T cd03259 164 KLREELREELKELQR 178 (213)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777776643
No 231
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.0012 Score=60.83 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=27.7
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
.+.+++++++.||+|+|||+++..+...... .+..++++.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f~~ 141 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTR 141 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHHHH--cCCceeeee
Confidence 3457889999999999999777665543322 244566654
No 232
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.52 E-value=9.7e-05 Score=64.90 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=40.8
Q ss_pred chhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 2 PRQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
.++++.++.+.|| -....+.+...+.+|+.+.|+||+||||||++..+-.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 4677778888884 4456677888889999999999999999999877654
No 233
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00015 Score=61.94 Aligned_cols=53 Identities=25% Similarity=0.207 Sum_probs=44.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~ 55 (431)
|+++.+..+.+.-..+...+...+-+|+...+.||+|+||||++.........
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~ 53 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK 53 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc
Confidence 46788889999888888889999999999999999999999888666554433
No 234
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.50 E-value=0.00012 Score=65.41 Aligned_cols=142 Identities=17% Similarity=0.113 Sum_probs=78.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC--------------CcEEEEeCch
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--------------GKLIGVTQPR 68 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~--------------~~~v~v~~p~ 68 (431)
++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++..
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~ 90 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL 90 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecC
Confidence 45566666666655666777888889999999999999999988777643221110 0113333322
Q ss_pred hHHHH--HHhHHH---HHHhCC-----------ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcC
Q 014085 69 RVAAV--TVAKRV---AEESGV-----------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHER 130 (431)
Q Consensus 69 ~~l~~--~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~ 130 (431)
..+.. ...+.+ ....+. .++.. .+........+..++.+..+....+.+.+++++|| .+.+
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 169 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169 (214)
T ss_pred cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11100 000100 000000 00100 01111123355666666677777788999999999 4445
Q ss_pred ccchHHHHHHHHHHH
Q 014085 131 TVHTDVLLGLLKKVQ 145 (431)
Q Consensus 131 ~~~~~~~~~~~~~~~ 145 (431)
......+..++++..
T Consensus 170 ~~~~~~l~~~l~~~~ 184 (214)
T PRK13543 170 LEGITLVNRMISAHL 184 (214)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566767776653
No 235
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.49 E-value=0.00013 Score=65.33 Aligned_cols=141 Identities=23% Similarity=0.276 Sum_probs=75.8
Q ss_pred hhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCC---------------------cE
Q 014085 4 QKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG---------------------KL 61 (431)
Q Consensus 4 ~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~---------------------~~ 61 (431)
+++.+..+.++ -.++.+.+...+.+|+.+.|.||+||||||++..+.-..... .| ..
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~-~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEEcccCCHHHHHHHHhh
Confidence 34445555553 334566777788899999999999999999887765432111 11 12
Q ss_pred EEEeCchhHHHH--HHhHHHHH---HhCCc----------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEE
Q 014085 62 IGVTQPRRVAAV--TVAKRVAE---ESGVE----------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAII 123 (431)
Q Consensus 62 v~v~~p~~~l~~--~~~~~~~~---~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 123 (431)
+.+++....+.. ...+.+.. ..+.. .....+. ........+..++.+..++...+.+.++++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 333322211110 00111100 00000 0000011 111123355566666666667788899999
Q ss_pred Eec--CCcCccchHHHHHHHHHHH
Q 014085 124 VDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 124 iDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
+|| .+.+......+.++++++.
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~~~~ 184 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLKRLN 184 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHH
Confidence 999 4555666677777777653
No 236
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.48 E-value=0.034 Score=60.26 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=45.8
Q ss_pred ccCChHHHHHHHHHHHhCC-CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHH
Q 014085 11 KSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~ 75 (431)
..+.+.+-|.+++..+..+ +.++|+|+.|+||||++..+.... ...+..++.+.|+-.++...
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~--e~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAW--EAAGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEecCcHHHHHHH
Confidence 3467889999999988875 467899999999998765443221 12256788888887766444
No 237
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.47 E-value=0.00016 Score=64.18 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=72.6
Q ss_pred hhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----C---------cEEEEeCchhH--H
Q 014085 9 QRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----G---------KLIGVTQPRRV--A 71 (431)
Q Consensus 9 ~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----~---------~~v~v~~p~~~--l 71 (431)
..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+ + +.+.+++.... .
T Consensus 5 l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~ 84 (205)
T cd03226 5 ISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQL 84 (205)
T ss_pred EEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhh
Confidence 3444443 3455566677889999999999999999998777643221110 0 12333332211 1
Q ss_pred H-HHHhHHHHH---HhCC----------ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchH
Q 014085 72 A-VTVAKRVAE---ESGV----------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTD 135 (431)
Q Consensus 72 ~-~~~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~ 135 (431)
. ....+.+.. .... .++. ..+........+..++.+..++.....+.+++++|| .+.+.....
T Consensus 85 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 163 (205)
T cd03226 85 FTDSVREELLLGLKELDAGNEQAETVLKDLDL-YALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163 (205)
T ss_pred hhccHHHHHhhhhhhcCccHHHHHHHHHHcCC-chhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHH
Confidence 0 011111110 0000 0000 001111223355666666666667788899999999 455555667
Q ss_pred HHHHHHHHHH
Q 014085 136 VLLGLLKKVQ 145 (431)
Q Consensus 136 ~~~~~~~~~~ 145 (431)
.+.++++++.
T Consensus 164 ~l~~~l~~~~ 173 (205)
T cd03226 164 RVGELIRELA 173 (205)
T ss_pred HHHHHHHHHH
Confidence 7777777653
No 238
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00012 Score=65.88 Aligned_cols=130 Identities=19% Similarity=0.195 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC------------CcEEEEeCchhH-----HHHHHhHHH
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------------GKLIGVTQPRRV-----AAVTVAKRV 79 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~------------~~~v~v~~p~~~-----l~~~~~~~~ 79 (431)
++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++.... .+.+.....
T Consensus 18 ~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (220)
T cd03293 18 TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG 97 (220)
T ss_pred EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH
Confidence 455666777889999999999999999998777643221110 112333332111 111111000
Q ss_pred HHHhCC----------ccCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHH
Q 014085 80 AEESGV----------ELGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 80 ~~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~ 144 (431)
....+. ..-...+. ........+..++.+..++.....+.+++++|| ++........+..++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 98 LELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI 177 (220)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 000000 00000111 111223456677777777777788899999999 455566667777877766
Q ss_pred HH
Q 014085 145 QN 146 (431)
Q Consensus 145 ~~ 146 (431)
..
T Consensus 178 ~~ 179 (220)
T cd03293 178 WR 179 (220)
T ss_pred HH
Confidence 43
No 239
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.46 E-value=0.00034 Score=67.87 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHH------hCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHH--hHHHHHHhCCc
Q 014085 15 IASVEKRLVEEV------RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV--AKRVAEESGVE 86 (431)
Q Consensus 15 ~~~~Q~~~~~~~------~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~--~~~~~~~~~~~ 86 (431)
+.+-|++++..+ .++.++.+.||-|+|||+++..+...... .+..++++.|+-.++..+ ...+.++++..
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~--~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~ 79 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS--RGKKVLVTAPTGIAAFNIPGGRTIHSFFGIP 79 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc--ccceEEEecchHHHHHhccCCcchHHhcCcc
Confidence 456688887777 78999999999999999888776655432 356788888988888766 45566666654
Q ss_pred cCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecCC
Q 014085 87 LGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah 128 (431)
...... ......... .....+.+.+++|+||+-
T Consensus 80 ~~~~~~----~~~~~~~~~-----~~~~~l~~~~~lIiDEis 112 (364)
T PF05970_consen 80 INNNEK----SQCKISKNS-----RLRERLRKADVLIIDEIS 112 (364)
T ss_pred cccccc----ccccccccc-----hhhhhhhhheeeeccccc
Confidence 322110 000011111 112346779999999983
No 240
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.45 E-value=0.00013 Score=68.91 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=79.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC----------------CcEEEEeC
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----------------GKLIGVTQ 66 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----------------~~~v~v~~ 66 (431)
++++.+..+.++..++.+.+...+.+|+.+.+.||+||||||++..+.-......+ ...+.+++
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 35556666766655566777788889999999999999999998777643221100 11233332
Q ss_pred chh-----HHHHHHhHHHHHHhCCc----------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--
Q 014085 67 PRR-----VAAVTVAKRVAEESGVE----------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE-- 126 (431)
Q Consensus 67 p~~-----~l~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE-- 126 (431)
... ..+.+.........+.. .-...+. ........+...+.+..++...+.+.+++++||
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 111 01111111000000000 0000111 011123355566666666777788999999999
Q ss_pred CCcCccchHHHHHHHHHHH
Q 014085 127 AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 127 ah~~~~~~~~~~~~~~~~~ 145 (431)
++.+......+.++++++.
T Consensus 164 ~gLD~~~~~~l~~~l~~~~ 182 (303)
T TIGR01288 164 TGLDPHARHLIWERLRSLL 182 (303)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 5666666677777777763
No 241
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.44 E-value=0.00012 Score=66.77 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred hhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++ -.++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455566665 44566777888889999999999999999998776643
No 242
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00026 Score=58.02 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~ 69 (431)
+..+++.||+|+|||+++..++....... ..++++.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEE
Confidence 57899999999999988877776654321 1355554433
No 243
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.43 E-value=8.7e-05 Score=68.30 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=76.6
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----C-------cEEEEeCchhHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----G-------KLIGVTQPRRVA 71 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----~-------~~v~v~~p~~~l 71 (431)
+++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-......+ + ..+.+++....+
T Consensus 13 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l 92 (257)
T PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARL 92 (257)
T ss_pred EEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccC
Confidence 4455555666544556667777889999999999999999998777643221110 0 112222221100
Q ss_pred -----HHHHh---------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchH
Q 014085 72 -----AVTVA---------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTD 135 (431)
Q Consensus 72 -----~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~ 135 (431)
+.+.. ..+..... .++. ...........+..++.+..+....+.+.+++++|| .+.+.....
T Consensus 93 ~~~~tv~enl~~~~~~~~~~~~~~~l~-~~gl-~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~ 170 (257)
T PRK11247 93 LPWKKVIDNVGLGLKGQWRDAALQALA-AVGL-ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170 (257)
T ss_pred CCCCcHHHHHHhcccchHHHHHHHHHH-HcCC-hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 10000 00000000 0000 001111223456666666666777788899999999 455555566
Q ss_pred HHHHHHHHHHH
Q 014085 136 VLLGLLKKVQN 146 (431)
Q Consensus 136 ~~~~~~~~~~~ 146 (431)
.+..+++++..
T Consensus 171 ~l~~~L~~~~~ 181 (257)
T PRK11247 171 EMQDLIESLWQ 181 (257)
T ss_pred HHHHHHHHHHH
Confidence 77777776543
No 244
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.43 E-value=0.00025 Score=64.05 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=37.2
Q ss_pred hhhHHHhhccCCh---HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~---~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++- .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 11 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred eEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3445555566543 2456677778889999999999999999988777644
No 245
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.43 E-value=0.02 Score=66.70 Aligned_cols=246 Identities=16% Similarity=0.192 Sum_probs=124.0
Q ss_pred cCChHHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 12 SLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
.+.+.+-|.+++..+... +..+|+|+.|+|||+++..+..... ..+..+.++.|+.-.+....+....... .+..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~--~~G~~V~~lAPTgrAA~~L~e~~g~~A~-Ti~~ 503 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLAS--EQGYEIQIITAGSLSAQELRQKIPRLAS-TFIT 503 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHhcchhh-hHHH
Confidence 456788899999998864 6899999999999988766654322 2366788888988777555543210000 0000
Q ss_pred eEeEeEeecCCCChhHhHHHHh-cccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCcccc
Q 014085 90 RVGYSIRFDDRTSTSTRIKEAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 168 (431)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 168 (431)
....... . .....+..++ ....+..-+++||||+.- ..+..+..+++....
T Consensus 504 ~l~~l~~--~--~~~~tv~~fl~~~~~l~~~~vlIVDEAsM--l~~~~~~~Ll~~a~~---------------------- 555 (1960)
T TIGR02760 504 WVKNLFN--D--DQDHTVQGLLDKSSPFSNKDIFVVDEANK--LSNNELLKLIDKAEQ---------------------- 555 (1960)
T ss_pred HHHhhcc--c--ccchhHHHhhcccCCCCCCCEEEEECCCC--CCHHHHHHHHHHHhh----------------------
Confidence 0000000 0 0000111111 112245689999999962 333444444443322
Q ss_pred ccCCCCCCCcccccccccCCCCCceEEEEcCCC------ChHHHHhhh-CCCceEEecCce-eeeeEeeecCCCcchHHH
Q 014085 169 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL------DARGFSEYF-GCAKAVHVQGRQ-FPVEILYTLYPEPDYLDA 240 (431)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~------~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 240 (431)
.+.++|++-=+- ....|..+. .+.+.+...... ....+........+....
T Consensus 556 ---------------------~garvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ 614 (1960)
T TIGR02760 556 ---------------------HNSKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDY 614 (1960)
T ss_pred ---------------------cCCEEEEEcChhhcCccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHH
Confidence 345666553221 112222221 123333332211 111111222122222233
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCC-cCCCceEEEEcCC-CCCHHHHhhhhCcCCCC
Q 014085 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLP-EASRKLVTVPIFS-SLPSEQQMRVFAPAAAG 312 (431)
Q Consensus 241 ~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~-~~~~~~~v~~lhg-~~~~~~r~~i~~~f~~g 312 (431)
+......... ...+++|+.++.++...|...++..+...- -...+..+..+.. +|+..++... ..|+.|
T Consensus 615 ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 615 IASAWLDLTP--DRQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHhccc--ccCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 3333333222 345699999999999999999988763111 1122344444433 6777777643 455544
No 246
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.42 E-value=0.00021 Score=65.90 Aligned_cols=50 Identities=26% Similarity=0.227 Sum_probs=39.6
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++..++-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46666777777655566667777889999999999999999988777644
No 247
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.42 E-value=0.00013 Score=65.54 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=36.0
Q ss_pred hHHHhhccCChH----HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPIA----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~~----~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++.. ++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 ~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 3 TADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344555555543 456667777889999999999999999998777644
No 248
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.41 E-value=2.3e-05 Score=75.84 Aligned_cols=112 Identities=21% Similarity=0.179 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-----------------ccCCcEEEEeCchhHHHHH-HhH
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-----------------CRDGKLIGVTQPRRVAAVT-VAK 77 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-----------------~~~~~~v~v~~p~~~l~~~-~~~ 77 (431)
.|+.+.+.+.+..|+.+.|+||+|||||+++..+.-.-.. ..=++.+.++|-..++..- +.+
T Consensus 349 ~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIae 428 (580)
T COG4618 349 KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE 428 (580)
T ss_pred CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHH
Confidence 3667788889999999999999999999988776522110 0114455565544333211 112
Q ss_pred HHHHHhCCc------------------cCCeEeEeEe---ecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 78 RVAEESGVE------------------LGQRVGYSIR---FDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 78 ~~~~~~~~~------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
.++++-... ...--||... .....+..++++..+.+.+..+..++|+||=
T Consensus 429 NIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEP 499 (580)
T COG4618 429 NIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499 (580)
T ss_pred HHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCC
Confidence 222222100 0111222211 1123455666777778888899999999994
No 249
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.41 E-value=0.0002 Score=63.30 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=70.7
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc-cccCCcEEEEe-CchhHH-HHHHhH-HHHHHh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-FCRDGKLIGVT-QPRRVA-AVTVAK-RVAEES 83 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~-~~~~~~~v~v~-~p~~~l-~~~~~~-~~~~~~ 83 (431)
+..+.++..+.-+.+...+.+|+.+.|.||+|||||+++..+.-... ....|. +.+- .+.... ...... .+...+
T Consensus 5 ~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~-i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (200)
T cd03217 5 DLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE-ILFKGEDITDLPPEERARLGIFLAF 83 (200)
T ss_pred EEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccE-EEECCEECCcCCHHHHhhCcEEEee
Confidence 33444443345556677888999999999999999998877665421 111222 2211 000000 000000 000000
Q ss_pred CCc--c-CCeEe-EeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 84 GVE--L-GQRVG-YSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 84 ~~~--~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
... . +..+. .........+..++.+..+....+.+.+++++|| .+.+......+..+++++.
T Consensus 84 q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~ 151 (200)
T cd03217 84 QYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR 151 (200)
T ss_pred cChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 000 0 00000 0001112456666677777777888999999999 4555555666777776653
No 250
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.40 E-value=6.7e-05 Score=72.24 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=81.8
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------CcEEEEe
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---------------GKLIGVT 65 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---------------~~~v~v~ 65 (431)
|+++++.+..+.++.....+.+...+..|+.+.+.||+||||||++..+.-......+ .+.+.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred CcEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4566777777777655455566777889999999999999999998877743221100 1122222
Q ss_pred CchhH-----HHHHHhH---------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEe
Q 014085 66 QPRRV-----AAVTVAK---------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVD 125 (431)
Q Consensus 66 ~p~~~-----l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViD 125 (431)
..... .+.+... ++.+... .++. ..+..+.....+..++.+..++.....+.+++++|
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~-~l~L-~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLD-LVGL-PGSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCC-CchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 21111 1111110 0000000 0010 11122233456777777778888888999999999
Q ss_pred cC--CcCccchHHHHHHHHHHHH
Q 014085 126 EA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 126 Ea--h~~~~~~~~~~~~~~~~~~ 146 (431)
|- ..+......+...++++..
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~ 182 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQR 182 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH
Confidence 93 3444445666666666543
No 251
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0014 Score=62.67 Aligned_cols=94 Identities=23% Similarity=0.345 Sum_probs=48.8
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
..++.++++||||+||||++..+...... .+.++.++. |.+..+..+-..+++..+..+ . .. ...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------~----~~-~dp 270 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------I----VA-TSP 270 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCCE------E----ec-CCH
Confidence 35778999999999999877666644322 233444432 444433333333343333211 0 00 112
Q ss_pred HhHHHHhcc-cCCCCCcEEEEecCCcCccc
Q 014085 105 TRIKEALLD-PYLSRYSAIIVDEAHERTVH 133 (431)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~lViDEah~~~~~ 133 (431)
..+...+.. ....+++++++|=+-.....
T Consensus 271 ~dL~~al~~l~~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 271 AELEEAVQYMTYVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCccC
Confidence 223332221 12356899999998643333
No 252
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.39 E-value=0.00018 Score=64.25 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=75.2
Q ss_pred HHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEeCchhHH
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVTQPRRVA 71 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~~p~~~l 71 (431)
.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-...... ....+.+++....+
T Consensus 4 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (213)
T cd03301 4 ENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYAL 83 (213)
T ss_pred EeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhh
Confidence 344444544455666777788999999999999999999877764422110 01124444332211
Q ss_pred HH--HHhHHHHH---HhCCc----------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCc
Q 014085 72 AV--TVAKRVAE---ESGVE----------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERT 131 (431)
Q Consensus 72 ~~--~~~~~~~~---~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~ 131 (431)
.. ...+.+.. ..+.. .-...+. ........+..++.+..++.....+.+++++|| .+.+.
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~ 163 (213)
T cd03301 84 YPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA 163 (213)
T ss_pred ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 10 00111100 00000 0000011 111122355566666666667788899999999 45555
Q ss_pred cchHHHHHHHHHHHH
Q 014085 132 VHTDVLLGLLKKVQN 146 (431)
Q Consensus 132 ~~~~~~~~~~~~~~~ 146 (431)
.....+.++++++..
T Consensus 164 ~~~~~l~~~l~~~~~ 178 (213)
T cd03301 164 KLRVQMRAELKRLQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777776643
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00013 Score=64.00 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=69.9
Q ss_pred hHHHhhccCCh----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHH
Q 014085 5 KILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 5 ~~~~~~~~~~~----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.... ...+. +.+-- .. +.......+
T Consensus 5 ~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~-i~~~g-~~-~~~~~~~~i 81 (192)
T cd03232 5 TWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE-ILING-RP-LDKNFQRST 81 (192)
T ss_pred EEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE-EEECC-Ee-hHHHhhhce
Confidence 44455555543 3455666677889999999999999999988777643211 11222 22210 00 000000000
Q ss_pred HHHhCC-------ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHH
Q 014085 80 AEESGV-------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 80 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~ 145 (431)
.-.+.. .+.....+... ....+..++.+..+....+.+.+++++||- +.+......+..+++++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~-~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~ 155 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSAL-LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA 155 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHH-HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 000000 00000000000 003555566666666677888999999994 444455566666666543
No 254
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00013 Score=61.71 Aligned_cols=110 Identities=24% Similarity=0.293 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeec
Q 014085 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD 98 (431)
Q Consensus 19 Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (431)
...+...+.+|+.+.|.||+|+|||+++..+...... ..+ .+.+-.. . ........+ ...+++..+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G-~i~~~~~-~-~~~~~~~~~--------~~~i~~~~q-- 80 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-TSG-EILIDGK-D-IAKLPLEEL--------RRRIGYVPQ-- 80 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-Ccc-EEEECCE-E-cccCCHHHH--------HhceEEEee--
Confidence 3444455678999999999999999888776544322 122 2222111 0 000000011 112344333
Q ss_pred CCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHH
Q 014085 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (431)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~ 144 (431)
.+..++.+..+......+.+++++||- +.+......+...+.+.
T Consensus 81 --lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~ 126 (157)
T cd00267 81 --LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126 (157)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 556666666666667777999999994 33444445555555543
No 255
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00013 Score=65.13 Aligned_cols=136 Identities=18% Similarity=0.223 Sum_probs=70.1
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-------------CcEEEEeCchh-----HH
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-------------GKLIGVTQPRR-----VA 71 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-------------~~~v~v~~p~~-----~l 71 (431)
.+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++... ..
T Consensus 7 ~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~t 86 (210)
T cd03269 7 TKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86 (210)
T ss_pred EEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCc
Confidence 3333323344555667789999999999999999998777644221110 01233333211 11
Q ss_pred HHHHhHHHHHHhCCc----------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHH
Q 014085 72 AVTVAKRVAEESGVE----------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDV 136 (431)
Q Consensus 72 ~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~ 136 (431)
+.+.........+.. .-...+. ........+..++.+..++.....+.+++++|| .+.+......
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~ 166 (210)
T cd03269 87 VIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVEL 166 (210)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 111111000000000 0000011 011123355566666666667788899999999 3445555666
Q ss_pred HHHHHHHHH
Q 014085 137 LLGLLKKVQ 145 (431)
Q Consensus 137 ~~~~~~~~~ 145 (431)
+..++++..
T Consensus 167 ~~~~l~~~~ 175 (210)
T cd03269 167 LKDVIRELA 175 (210)
T ss_pred HHHHHHHHH
Confidence 777776653
No 256
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.38 E-value=0.00012 Score=65.80 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3455666777889999999999999999998777643
No 257
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.37 E-value=0.00011 Score=66.34 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=37.8
Q ss_pred hhhHHHhhccCCh----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4556666666643 1355667777889999999999999999988777644
No 258
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.37 E-value=0.011 Score=57.91 Aligned_cols=231 Identities=14% Similarity=0.093 Sum_probs=142.5
Q ss_pred CCCCCcEEEEecCCcCc-cchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCccccccccc-CCCCCc
Q 014085 115 YLSRYSAIIVDEAHERT-VHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQG-RKFAPL 192 (431)
Q Consensus 115 ~~~~~~~lViDEah~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~ 192 (431)
+++.+.++|+|.|+... ++.+-+..++..+. .+....++.++.+.-..... ....-.
T Consensus 158 FLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN---------------------~~P~~~~~~DfsRVR~w~Ldg~a~~~R 216 (442)
T PF06862_consen 158 FLSSIEVLIIDQADVLLMQNWEHVLHVFEHLN---------------------LQPKKSHDTDFSRVRPWYLDGQAKYYR 216 (442)
T ss_pred hhheeeeEeechhhHHHHhhHHHHHHHHHHhc---------------------cCCCCCCCCCHHHHHHHHHcCcchhee
Confidence 37889999999997322 33344444444432 22222333333332222221 222335
Q ss_pred eEEEEcCCCChHHHH---hhhCCC----ce-------EEecCceeeeeEeeecCCCcch-------HHHHHHHHHHHhh-
Q 014085 193 KLIIMSASLDARGFS---EYFGCA----KA-------VHVQGRQFPVEILYTLYPEPDY-------LDATLITIFQVHL- 250 (431)
Q Consensus 193 ~~v~lSAT~~~~~l~---~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~- 250 (431)
|.|++|+..+++-.+ ..+.|. .. ..+..-..++++.+...+..+. .+-....++..+.
T Consensus 217 Qtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~ 296 (442)
T PF06862_consen 217 QTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKR 296 (442)
T ss_pred EeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhh
Confidence 899999988776544 222221 11 1111222344555554433221 2222334454555
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcc--ccccc
Q 014085 251 DEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA--ETSVT 328 (431)
Q Consensus 251 ~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~--~~Gvd 328 (431)
....+.+|||+||.=+=..+.+.|.+. ++....+|--.+..+-.+.-..|..|+.+||+-|-=+ =+=..
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 566788999999999999999999876 8899999999999998999999999999999999843 44567
Q ss_pred cCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCC--C--CCcEEEEeeChhhhh
Q 014085 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGR--E--GPGKCFRLYPENEFD 390 (431)
Q Consensus 329 ip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR--~--~~G~~~~l~~~~~~~ 390 (431)
+.+|+.||=+|+ +. .|.-..+++...+.... . +...|.++|++-|.-
T Consensus 368 irGi~~viFY~~--------P~-------~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~ 418 (442)
T PF06862_consen 368 IRGIRHVIFYGP--------PE-------NPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDAL 418 (442)
T ss_pred ecCCcEEEEECC--------CC-------ChhHHHHHHhhhcccccccccccCceEEEEecHhHHH
Confidence 888999997443 22 24444556666554433 1 157899999976543
No 259
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00025 Score=64.30 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=37.3
Q ss_pred hhhHHHhhccCCh----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4555566666643 2455667778889999999999999999988777643
No 260
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.35 E-value=0.00025 Score=64.07 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=35.0
Q ss_pred HHHhhccCChH----HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 6 ILQQRKSLPIA----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 6 ~~~~~~~~~~~----~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+..+.++.. ++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444555432 456677778889999999999999999988777643
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.35 E-value=0.00063 Score=58.77 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=25.0
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
+..++++++.||+|+|||+++..+...... .+..+.++..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~ 83 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITA 83 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeec
Confidence 346889999999999999777666544332 3555666653
No 262
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.34 E-value=0.0001 Score=66.00 Aligned_cols=48 Identities=27% Similarity=0.372 Sum_probs=34.8
Q ss_pred hHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 ~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 3 RFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445555532 2355566677889999999999999999988777643
No 263
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00017 Score=66.29 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=75.3
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----C-------cEEEEeCchhH--
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----G-------KLIGVTQPRRV-- 70 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----~-------~~v~v~~p~~~-- 70 (431)
++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-......+ + ..+.+++....
T Consensus 3 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~ 82 (255)
T PRK11248 3 QISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLL 82 (255)
T ss_pred EEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccC
Confidence 344455555444455667777889999999999999999998777643221110 0 11222222111
Q ss_pred ---HHHHHhHHHHHHhCC----------ccCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCcc
Q 014085 71 ---AAVTVAKRVAEESGV----------ELGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTV 132 (431)
Q Consensus 71 ---l~~~~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~ 132 (431)
.+.+.........+. ..-...+. ........+...+.+..+....+.+.+++++|| .+.+..
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~ 162 (255)
T PRK11248 83 PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162 (255)
T ss_pred CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 111110000000000 00000011 111223456666666667777788899999999 445556
Q ss_pred chHHHHHHHHHHH
Q 014085 133 HTDVLLGLLKKVQ 145 (431)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (431)
....+..+++++.
T Consensus 163 ~~~~l~~~L~~~~ 175 (255)
T PRK11248 163 TREQMQTLLLKLW 175 (255)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777654
No 264
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.34 E-value=0.00015 Score=64.63 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=33.2
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++..++-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 5 DLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334444434455566667789999999999999999998777643
No 265
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.34 E-value=0.00017 Score=63.77 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=37.7
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3445556666555566777788889999999999999999998877644
No 266
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00026 Score=65.82 Aligned_cols=48 Identities=19% Similarity=0.092 Sum_probs=37.2
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 445556666655556667777888999999999999999998877653
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.33 E-value=0.00025 Score=72.20 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=81.4
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC-------------cEEEE
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG-------------KLIGV 64 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~-------------~~v~v 64 (431)
++++.+..+.|.-.++-+.+...+.+|+.+.|+||+||||||++..+.-...... .+ ..+.+
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 5666677777765555667777888999999999999999999877763321110 00 11222
Q ss_pred eCchhH-----HHHHH-----------hHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--
Q 014085 65 TQPRRV-----AAVTV-----------AKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE-- 126 (431)
Q Consensus 65 ~~p~~~-----l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE-- 126 (431)
++.... .+.+. .+.+..... .++.. ..........+..++.+..++..+..+.+++++||
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~-~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLA-ALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccchHHHHHHHHHHH-HcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 221110 00000 000100000 00110 11112223456667777777777788999999999
Q ss_pred CCcCccchHHHHHHHHHHH
Q 014085 127 AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 127 ah~~~~~~~~~~~~~~~~~ 145 (431)
++.+......+.++++++.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~ 187 (510)
T PRK15439 169 ASLTPAETERLFSRIRELL 187 (510)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 5666777788888888764
No 268
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00016 Score=67.32 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=79.3
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEEEE
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIGV 64 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v~v 64 (431)
++++.+..+.++ ..++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 566667777775 34566777778889999999999999999988777643221100 012333
Q ss_pred eCchh--HHH-HHHhHHHHH---HhCC--------------ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEE
Q 014085 65 TQPRR--VAA-VTVAKRVAE---ESGV--------------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIV 124 (431)
Q Consensus 65 ~~p~~--~l~-~~~~~~~~~---~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVi 124 (431)
++... ... ..+.+.+.- ..+. .++. ...........+...+.+..++.....+.+++++
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll 162 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-WDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL 162 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33221 110 001111100 0000 0011 0111122234555666666667777889999999
Q ss_pred ec--CCcCccchHHHHHHHHHHH
Q 014085 125 DE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 125 DE--ah~~~~~~~~~~~~~~~~~ 145 (431)
|| ...+......+..+++++.
T Consensus 163 DEPt~~LD~~~~~~l~~~l~~~~ 185 (274)
T PRK13647 163 DEPMAYLDPRGQETLMEILDRLH 185 (274)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHH
Confidence 99 3455566677777777664
No 269
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.33 E-value=0.00022 Score=63.66 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3455666677889999999999999999988777643
No 270
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.33 E-value=0.0018 Score=60.06 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=21.5
Q ss_pred HhCCC-EEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKND-ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~-~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..+. .+++.||+|+|||+++..+....
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 34444 78999999999998887776543
No 271
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00013 Score=67.12 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=38.7
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++..++-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45566666666655566677778889999999999999999988777644
No 272
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.33 E-value=1.6e-05 Score=70.18 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=40.4
Q ss_pred chhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
+++++.+..+.|..-.....+...+.+|+.+.++||+|+||||++..+-
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlit 51 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLIT 51 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeec
Confidence 4566777788887777777888899999999999999999998875554
No 273
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.33 E-value=0.00024 Score=63.83 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=34.8
Q ss_pred HHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 7 LQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 7 ~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+..+.++. .++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 4 ~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 4 RNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344445543 4566677778889999999999999999988777643
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.32 E-value=0.00017 Score=73.18 Aligned_cols=52 Identities=21% Similarity=0.154 Sum_probs=42.7
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|.++++.+..+.|+-.++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 1 m~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 1 MSSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred CceEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4567777888888765677778888889999999999999999998777643
No 275
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.32 E-value=0.0001 Score=68.45 Aligned_cols=50 Identities=20% Similarity=0.120 Sum_probs=37.8
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45666666666544455666777889999999999999999988777643
No 276
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.32 E-value=0.00017 Score=66.96 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=38.4
Q ss_pred hhhHHHhhccCC---------hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLP---------IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~---------~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++ ..++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 456666666663 13466777788889999999999999999988777643
No 277
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.32 E-value=0.00013 Score=70.77 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=78.6
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEeCc
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVTQP 67 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~~p 67 (431)
++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-...... ..+.+.++..
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 4566666666654445556677778999999999999999999877764322110 0111222221
Q ss_pred hhH------HHHHHh--------------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 68 RRV------AAVTVA--------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 68 ~~~------l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
... ..+.+. +++..... .++. .++........+..++.+..++.....+.+++++||-
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~-~~~l-~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP 171 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALR-MVQL-EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHH-HcCC-chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111 111110 00000000 0011 1112223344567777777788888889999999993
Q ss_pred --CcCccchHHHHHHHHHHHH
Q 014085 128 --HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 128 --h~~~~~~~~~~~~~~~~~~ 146 (431)
..+......+...++++..
T Consensus 172 ~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 172 LSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred CCcCCHHHHHHHHHHHHHHHH
Confidence 3344445566666666554
No 278
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.31 E-value=0.00013 Score=65.60 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=32.6
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+..+.++-.++.+.+...+.+|+.+.|+||+||||||++..+.-
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 5 NLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 34444443344556667788999999999999999998877653
No 279
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.31 E-value=0.00026 Score=63.64 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=33.7
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 5 NLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444434455667777889999999999999999998777643
No 280
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.31 E-value=0.0003 Score=62.25 Aligned_cols=46 Identities=22% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+..+.++..++.+.+...+.+|+.+.|.||+|||||+++..+.-.
T Consensus 4 ~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444444455667777889999999999999999888776643
No 281
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.00026 Score=64.21 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345556667789999999999999999988777533
No 282
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.30 E-value=0.00036 Score=63.25 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=34.0
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444445444455667778889999999999999999998777643
No 283
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.30 E-value=0.00024 Score=65.34 Aligned_cols=50 Identities=26% Similarity=0.221 Sum_probs=38.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++...+-+.+...+.+|+.++|.||+||||||++..+.-.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45566666666544455667778889999999999999999988777644
No 284
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.30 E-value=0.00025 Score=63.92 Aligned_cols=49 Identities=20% Similarity=0.341 Sum_probs=35.9
Q ss_pred hhHHHhhccCCh-------HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPI-------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~-------~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344455555532 2355667778889999999999999999988777643
No 285
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00017 Score=65.75 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=37.3
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455556666544566667778889999999999999999988777643
No 286
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.29 E-value=0.00059 Score=60.49 Aligned_cols=110 Identities=21% Similarity=0.194 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCc-----EEEEeCchhHHH-----HHH----------h
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK-----LIGVTQPRRVAA-----VTV----------A 76 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~-----~v~v~~p~~~l~-----~~~----------~ 76 (431)
++.+.+...+.+|+.+.|.||+||||||++..+.-..... .|. .+.+++....+. +.. .
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~-~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~ 97 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL-SGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERY 97 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC-CCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHH
Confidence 3556677778899999999999999999887776543322 221 234443321111 000 0
Q ss_pred HHHHHHhCCc--cCCe-Ee---EeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 77 KRVAEESGVE--LGQR-VG---YSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 77 ~~~~~~~~~~--~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
....+..+.. +... .+ .........+...+.+..++.....+.+++++||-
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 0000000000 0000 00 01112234667777777778888899999999994
No 287
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.00021 Score=66.70 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=41.4
Q ss_pred CchhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++++.+..+.++ -..+.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56677778888775 23466777778889999999999999999998777643
No 288
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.28 E-value=0.00033 Score=62.24 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=31.4
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 6 KKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 334333445566667789999999999999999988777643
No 289
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.28 E-value=0.00034 Score=64.07 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=38.0
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4455666666555566677778889999999999999999988776654
No 290
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.27 E-value=0.00035 Score=64.29 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=37.7
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+++.+..+.+ ..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55666666666 23556667778889999999999999999888777643
No 291
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0002 Score=68.77 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=76.8
Q ss_pred hhHHHhhccCC----hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC--------------------C
Q 014085 4 QKILQQRKSLP----IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--------------------G 59 (431)
Q Consensus 4 ~~~~~~~~~~~----~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~--------------------~ 59 (431)
+++.+..+.|+ ..++.+.+...+.+|+.+.|.||+||||||++..+.-......+ .
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 34445555554 23345566677889999999999999999998777643221100 0
Q ss_pred cEEEEeCchhH-----HHHHHhHHHHHHhCCc----------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcE
Q 014085 60 KLIGVTQPRRV-----AAVTVAKRVAEESGVE----------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSA 121 (431)
Q Consensus 60 ~~v~v~~p~~~-----l~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (431)
+.+.+++.... .+.+.........+.. .-...+. ........+..++.+..++..+..+.++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i 161 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 12333221110 1111110000000000 0000111 1112234566667777777777889999
Q ss_pred EEEec--CCcCccchHHHHHHHHHHHH
Q 014085 122 IIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 122 lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
+++|| .+.+......+.++++++..
T Consensus 162 LlLDEPts~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 162 LLCDEATSALDPATTRSILELLKDINR 188 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999 45556666777788777643
No 292
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.27 E-value=0.00019 Score=65.23 Aligned_cols=45 Identities=36% Similarity=0.409 Sum_probs=33.0
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 5 GLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 334444433445566677889999999999999999988777643
No 293
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.27 E-value=0.00056 Score=66.09 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=50.4
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
..++|.|..|||||.++..++........+..++++.+...+.....+.+....... . .............
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~---~------~~~~~~~~~~~i~ 72 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPK---L------KKSDFRKPTSFIN 72 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccc---h------hhhhhhhhHHHHh
Confidence 357899999999996665555554222334556666666666666665554433000 0 0001111111111
Q ss_pred -H-hcccCCCCCcEEEEecCCc
Q 014085 110 -A-LLDPYLSRYSAIIVDEAHE 129 (431)
Q Consensus 110 -~-~~~~~~~~~~~lViDEah~ 129 (431)
. ........++++|+||||.
T Consensus 73 ~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 73 NYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred hcccccccCCcCCEEEEehhHh
Confidence 1 1233467899999999994
No 294
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.26 E-value=0.00017 Score=65.77 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=38.7
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34556666666655566777778889999999999999999988777643
No 295
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.26 E-value=0.00016 Score=65.44 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=35.1
Q ss_pred HHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 7 LQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 7 ~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 4 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 4 SNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred EeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444555544566777788889999999999999999988777643
No 296
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.25 E-value=0.0011 Score=59.57 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchh
Q 014085 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (431)
Q Consensus 19 Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~ 69 (431)
-+.+...+-+|..+.+.||+|+||||.+.++--......+..++.-..|.+
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~ 90 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR 90 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch
Confidence 344555666899999999999999988876654333232222333334443
No 297
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.25 E-value=0.00022 Score=62.96 Aligned_cols=43 Identities=23% Similarity=0.127 Sum_probs=31.8
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.++..++.+.+...+.+|+.+.|.||+|||||+++..+.-.
T Consensus 7 ~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3344333445566667889999999999999999888776643
No 298
>PRK04296 thymidine kinase; Provisional
Probab=97.24 E-value=0.0006 Score=59.70 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=26.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
|...++.||.|+|||+++..++...... +.+++++.|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 5678999999999998876666554322 556666654
No 299
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.24 E-value=0.00067 Score=62.95 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.8
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
..+..++.+..++...+.+.+++++|| ++.+......+..+++++..
T Consensus 160 ~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~ 208 (269)
T cd03294 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 456666777777777788999999999 44455556777777776543
No 300
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.00035 Score=65.60 Aligned_cols=143 Identities=16% Similarity=0.112 Sum_probs=77.9
Q ss_pred hhHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC--------------------
Q 014085 4 QKILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-------------------- 58 (431)
Q Consensus 4 ~~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-------------------- 58 (431)
+++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 344555555542 3456667777889999999999999999988777643221100
Q ss_pred -CcEEEEeCchh--HHH-HHHhHHHHH---HhCC--------------ccCCeEeEeEeecCCCChhHhHHHHhcccCCC
Q 014085 59 -GKLIGVTQPRR--VAA-VTVAKRVAE---ESGV--------------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLS 117 (431)
Q Consensus 59 -~~~v~v~~p~~--~l~-~~~~~~~~~---~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (431)
...+.+++... .+. ..+.+.+.- ..+. .++.............+..++.+..++.....
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 01233332211 111 111111110 0000 01110011111223456667777777777888
Q ss_pred CCcEEEEecC--CcCccchHHHHHHHHHHHH
Q 014085 118 RYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 118 ~~~~lViDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
+.+++++||- ..+......++++++++..
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~~~L~~l~~ 193 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK 193 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 9999999994 4455566777777776644
No 301
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.24 E-value=0.00026 Score=67.84 Aligned_cols=143 Identities=22% Similarity=0.206 Sum_probs=79.2
Q ss_pred hhHHHhhccCCh----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC--------------------C
Q 014085 4 QKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--------------------G 59 (431)
Q Consensus 4 ~~~~~~~~~~~~----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~--------------------~ 59 (431)
+++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+........+ .
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 445556666641 2456677778889999999999999999998777644321110 0
Q ss_pred cEEEEeCchhHHH--HHHhHHHH---HHhCC----------ccCCeEe---EeEeecCCCChhHhHHHHhcccCCCCCcE
Q 014085 60 KLIGVTQPRRVAA--VTVAKRVA---EESGV----------ELGQRVG---YSIRFDDRTSTSTRIKEALLDPYLSRYSA 121 (431)
Q Consensus 60 ~~v~v~~p~~~l~--~~~~~~~~---~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (431)
+.+.+++....+. ..+.+.+. ...+. ..-..+| .........+..++.+..++..+..+.++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 1122222110000 00011110 00000 0000111 11122334566677777777778889999
Q ss_pred EEEecC--CcCccchHHHHHHHHHHHH
Q 014085 122 IIVDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 122 lViDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
+++||. +.+......++.+++++..
T Consensus 162 LLlDEPts~LD~~t~~~i~~lL~~l~~ 188 (343)
T TIGR02314 162 LLCDEATSALDPATTQSILELLKEINR 188 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999995 4456666778888887654
No 302
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.00038 Score=62.93 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=35.4
Q ss_pred HHHhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 6 ILQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 6 ~~~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred EEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4445555542 3466677778889999999999999999998777644
No 303
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.23 E-value=0.0023 Score=55.67 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=28.1
Q ss_pred cCCCCCcEEEEec--CCcCccchHHHHHHHHHHHHhh
Q 014085 114 PYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 114 ~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~~ 148 (431)
..+...+++.+|| |-.++..+.+.+.+-.+.++..
T Consensus 162 Atl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~ 198 (263)
T COG1101 162 ATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198 (263)
T ss_pred HhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhc
Confidence 4477899999999 5567777888888888888764
No 304
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.23 E-value=0.00029 Score=63.42 Aligned_cols=138 Identities=16% Similarity=0.117 Sum_probs=72.2
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-------------CcEEEEeCchhHHHH-
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-------------GKLIGVTQPRRVAAV- 73 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-------------~~~v~v~~p~~~l~~- 73 (431)
+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++....+..
T Consensus 5 ~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~ 84 (223)
T TIGR03740 5 NLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYEN 84 (223)
T ss_pred eEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCcccc
Confidence 334444434445556667789999999999999999988777643221110 012333332211100
Q ss_pred -HHhHHHH---HHhCCc------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHH
Q 014085 74 -TVAKRVA---EESGVE------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLL 138 (431)
Q Consensus 74 -~~~~~~~---~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~ 138 (431)
...+.+. ...+.. .-...+. ........+..++.+..++...+.+.+++++|| .+.+......+.
T Consensus 85 ~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~ 164 (223)
T TIGR03740 85 LTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELR 164 (223)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHH
Confidence 0111110 111100 0000111 111122345566666666677788899999999 344555566777
Q ss_pred HHHHHHH
Q 014085 139 GLLKKVQ 145 (431)
Q Consensus 139 ~~~~~~~ 145 (431)
.+++++.
T Consensus 165 ~~L~~~~ 171 (223)
T TIGR03740 165 ELIRSFP 171 (223)
T ss_pred HHHHHHH
Confidence 7777653
No 305
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00033 Score=64.07 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred hhHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC-----chhHHHH
Q 014085 4 QKILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ-----PRRVAAV 73 (431)
Q Consensus 4 ~~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~-----p~~~l~~ 73 (431)
+++.+..|.|+. ...++.+...+.+|+.+.|+|.+|+||||++..+=...... .|+ +++-- ....-..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt-sG~-v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT-SGS-VFVDGQDLTALSEAELR 79 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC-Cce-EEEcCEecccCChHHHH
Confidence 444555555554 35677888889999999999999999999987765443322 122 22211 0011111
Q ss_pred HHhHHHHHHhC-------CccCC-------------------------eEe---EeEeecCCCChhHhHHHHhcccCCCC
Q 014085 74 TVAKRVAEESG-------VELGQ-------------------------RVG---YSIRFDDRTSTSTRIKEALLDPYLSR 118 (431)
Q Consensus 74 ~~~~~~~~~~~-------~~~~~-------------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (431)
+..+++.=.+. ..+.. .+| ....+....+..++++..+++....+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 11111000000 00000 011 11122333444555556666667889
Q ss_pred CcEEEEecC--CcCccchHHHHHHHHHHHHh
Q 014085 119 YSAIIVDEA--HERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 119 ~~~lViDEa--h~~~~~~~~~~~~~~~~~~~ 147 (431)
++++..||+ +.++..+.-++.+++...+.
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~ 190 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRE 190 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHH
Confidence 999999997 45677778899999887765
No 306
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.003 Score=62.91 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=22.4
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+|+.++++||||+|||+++..+....
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999998876666543
No 307
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.21 E-value=0.00041 Score=69.91 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=47.6
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
|.++.+.+..+.++..++-+.+...+.+|+.+.++|++|+||||++..+.-..
T Consensus 1 m~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 1 MSMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 67788889999999999999999999999999999999999999998776443
No 308
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.21 E-value=0.00055 Score=69.55 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=81.2
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCc-------------------EEE
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK-------------------LIG 63 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~-------------------~v~ 63 (431)
++++.+..+.|.-.++-+.+...+.+|+.+.|+||+||||||++..+.-..... .|. .+.
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD-AGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEECCCCCHHHHHhCCEE
Confidence 566677777776555667778888899999999999999999987776432211 111 122
Q ss_pred EeCchhHHHH--HHhHHH----------------------HHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCC
Q 014085 64 VTQPRRVAAV--TVAKRV----------------------AEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRY 119 (431)
Q Consensus 64 v~~p~~~l~~--~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (431)
+++....+.. ...+.+ .+... .++. ...........+..++.+..++..+..+.
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~l-~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLA-RLNL-RFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHH-HcCC-CCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 2211100000 000000 00000 0000 00011122345666666667777778899
Q ss_pred cEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 120 SAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 120 ~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
+++++|| ++.+......+.++++++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~ 188 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELK 188 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 9999999 6777777888888888764
No 309
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.21 E-value=0.00034 Score=71.66 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=33.6
Q ss_pred hhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 9 QRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 9 ~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
....|+. .++.+.+...+.+|+.+.++||+||||||++..++...
T Consensus 340 vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 340 LSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344433 23566777778899999999999999999987776543
No 310
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.21 E-value=0.0025 Score=59.89 Aligned_cols=92 Identities=24% Similarity=0.218 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecC
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDD 99 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (431)
+.+...+..+++++++|||||||||++..++..........+++++.-..++... ....+.+... .
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~------------~~~~v~~~~~--~ 188 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA------------APNVVQLRTS--D 188 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC------------CCCEEEEEec--C
Confidence 3344556677899999999999999987776554322223466666654444210 0112222211 1
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEecCC
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDEah 128 (431)
... ....++....-.+.+.+|+.|+=
T Consensus 189 ~~~---~~~~~l~~aLR~~pD~iivGEiR 214 (299)
T TIGR02782 189 DAI---SMTRLLKATLRLRPDRIIVGEVR 214 (299)
T ss_pred CCC---CHHHHHHHHhcCCCCEEEEeccC
Confidence 111 22223333344679999999983
No 311
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.0004 Score=63.39 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=72.8
Q ss_pred HhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEEEEeCchh
Q 014085 8 QQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIGVTQPRR 69 (431)
Q Consensus 8 ~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v~v~~p~~ 69 (431)
+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++...
T Consensus 5 ~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (242)
T cd03295 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI 84 (242)
T ss_pred EEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence 34444443 3455566677889999999999999999988777643221100 01233333221
Q ss_pred HHHH--HHhHHHH---HHhCC--------------ccCCeE-eEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC--
Q 014085 70 VAAV--TVAKRVA---EESGV--------------ELGQRV-GYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA-- 127 (431)
Q Consensus 70 ~l~~--~~~~~~~---~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa-- 127 (431)
.+.. ...+.+. ...+. .++... .+........+...+.+..++...+.+.+++++||-
T Consensus 85 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 164 (242)
T cd03295 85 GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFG 164 (242)
T ss_pred cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1110 0011110 00000 001100 011112234566666667777777889999999994
Q ss_pred CcCccchHHHHHHHHHHHH
Q 014085 128 HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 128 h~~~~~~~~~~~~~~~~~~ 146 (431)
+.+......+..++++...
T Consensus 165 ~LD~~~~~~l~~~L~~~~~ 183 (242)
T cd03295 165 ALDPITRDQLQEEFKRLQQ 183 (242)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3344555667777776543
No 312
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.20 E-value=0.00042 Score=62.27 Aligned_cols=36 Identities=36% Similarity=0.397 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++...+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566677889999999999999999998777643
No 313
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.20 E-value=0.00044 Score=64.85 Aligned_cols=141 Identities=18% Similarity=0.108 Sum_probs=77.4
Q ss_pred hhHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC--------------------
Q 014085 4 QKILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-------------------- 58 (431)
Q Consensus 4 ~~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-------------------- 58 (431)
+++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 445556666642 2466777778889999999999999999998777643221100
Q ss_pred -CcEEEEeCchhH--HH-HHHhHHHH---HHhCC--------------ccCCeEeEeEeecCCCChhHhHHHHhcccCCC
Q 014085 59 -GKLIGVTQPRRV--AA-VTVAKRVA---EESGV--------------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLS 117 (431)
Q Consensus 59 -~~~v~v~~p~~~--l~-~~~~~~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (431)
...+.+++.... .. ....+.+. ...+. .++....+........+...+.+..++...+.
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~ 162 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAY 162 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 012333332210 00 00111110 00000 01110011112223456677777777777888
Q ss_pred CCcEEEEec--CCcCccchHHHHHHHHHH
Q 014085 118 RYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 118 ~~~~lViDE--ah~~~~~~~~~~~~~~~~ 144 (431)
+.+++++|| ...+......+..+++++
T Consensus 163 ~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 163 EPEILCLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 899999999 444555566777777665
No 314
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.20 E-value=0.00042 Score=62.43 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=73.2
Q ss_pred HHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----CcE------EEEeCchhHHHHH
Q 014085 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----GKL------IGVTQPRRVAAVT 74 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----~~~------v~v~~p~~~l~~~ 74 (431)
+.+....+...++.+.+...+.+|+.+.|.||+||||||++..+.-......+ +.. .....|.. .+.+
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~-tv~e 103 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL-TGRE 103 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC-cHHH
Confidence 33444455555566777778889999999999999999988777644321110 110 01111211 1111
Q ss_pred HhH---------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHH
Q 014085 75 VAK---------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVL 137 (431)
Q Consensus 75 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~ 137 (431)
... .+..... .++. ...........+..++.+..++...+.+.+++++|| .+.+......+
T Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~l~-~~~l-~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 104 NIYLNGRLLGLSRKEIDEKIDEIIE-FSEL-GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH-HcCC-hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 100 0000000 0000 000111123456666666667777788999999999 34444555666
Q ss_pred HHHHHHHH
Q 014085 138 LGLLKKVQ 145 (431)
Q Consensus 138 ~~~~~~~~ 145 (431)
.+.++...
T Consensus 182 ~~~l~~~~ 189 (224)
T cd03220 182 QRRLRELL 189 (224)
T ss_pred HHHHHHHH
Confidence 66666553
No 315
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.19 E-value=0.0022 Score=58.57 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=65.7
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CCcEEEEeCchhH-----HHHHHhHHHHHHhCC------ccCC
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRV-----AAVTVAKRVAEESGV------ELGQ 89 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~~~v~v~~p~~~-----l~~~~~~~~~~~~~~------~~~~ 89 (431)
+.+|+.+.|.||+||||||++..+.-...... .+..+.+++.... .+.+........... ....
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 45789999999999999999887764432211 1223444332111 111111100000000 0000
Q ss_pred eEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 90 RVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 90 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
..+. ........+..++.+..++.....+.+++++|| ++.+......+..+++++..
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 0111 111223456666677777777888999999999 45555666777777777654
No 316
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0046 Score=64.52 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
.|+.++++||||+||||.+..+........+++.+.++. +.+..+.++.+.+.+..+..+. + ... ..
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~--------~~~-~~ 252 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--A--------VKD-AA 252 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--c--------cCC-HH
Confidence 367889999999999988777765543333333454443 3343344444555555554321 0 011 22
Q ss_pred hHHHHhcccCCCCCcEEEEecCCcCc
Q 014085 106 RIKEALLDPYLSRYSAIIVDEAHERT 131 (431)
Q Consensus 106 ~~~~~~~~~~~~~~~~lViDEah~~~ 131 (431)
.+...+. .+.+.++++||=+-...
T Consensus 253 ~l~~al~--~~~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 253 DLRFALA--ALGDKHLVLIDTVGMSQ 276 (767)
T ss_pred HHHHHHH--HhcCCCEEEEeCCCCCc
Confidence 2333333 34567999999986433
No 317
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0046 Score=60.46 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=48.9
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccC--CcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~--~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
..|+.+.++||||+||||++..+......... ...++.....+....++...+.+..+..+. .... .
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~----------~v~~-~ 257 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR----------SIKD-I 257 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee----------cCCC-H
Confidence 35778999999999999888766654322111 122333344445555555555555543311 0111 1
Q ss_pred HhHHHHhcccCCCCCcEEEEecCC
Q 014085 105 TRIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 105 ~~~~~~~~~~~~~~~~~lViDEah 128 (431)
......+. .+.+.+.+++|.+-
T Consensus 258 ~dl~~al~--~l~~~d~VLIDTaG 279 (420)
T PRK14721 258 ADLQLMLH--ELRGKHMVLIDTVG 279 (420)
T ss_pred HHHHHHHH--HhcCCCEEEecCCC
Confidence 11222222 35678999999974
No 318
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.18 E-value=0.0003 Score=64.86 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=37.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+++.+..+.++..++-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555666666544455667777889999999999999999998877644
No 319
>PRK08727 hypothetical protein; Validated
Probab=97.18 E-value=0.0019 Score=58.47 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
+..+++.||+|+|||+++..+...... .+..+++++
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~--~~~~~~y~~ 76 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQ--AGRSSAYLP 76 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 346999999999999877665443221 234555554
No 320
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.003 Score=62.81 Aligned_cols=88 Identities=16% Similarity=0.264 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
.|+.++++||||+||||.+..+........++..+.++ -+.+..+.++.+.+.+..+..... ......
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~----------~~~~~D 324 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA----------VKDAAD 324 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec----------cCCchh
Confidence 46789999999999998887776544333222234443 344555556666566655532100 001111
Q ss_pred hHHHHhcccCCCCCcEEEEecCC
Q 014085 106 RIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 106 ~~~~~~~~~~~~~~~~lViDEah 128 (431)
....+ ..+.+.+.+++|.+-
T Consensus 325 -l~~aL--~~L~d~d~VLIDTaG 344 (484)
T PRK06995 325 -LRLAL--SELRNKHIVLIDTIG 344 (484)
T ss_pred -HHHHH--HhccCCCeEEeCCCC
Confidence 11111 245567899999975
No 321
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.18 E-value=0.0029 Score=55.34 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
..+..++.+..++.....+.+++++|| .+.+......+.++++++.
T Consensus 127 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 174 (190)
T TIGR01166 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174 (190)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 345556666666666788899999999 4555555677777776653
No 322
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00029 Score=64.25 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=33.3
Q ss_pred HhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred eEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444443 3455666777889999999999999999988777643
No 323
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.0004 Score=66.25 Aligned_cols=144 Identities=16% Similarity=0.209 Sum_probs=78.9
Q ss_pred chhhHHHhhccCCh----------HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-------------
Q 014085 2 PRQKILQQRKSLPI----------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------------- 58 (431)
Q Consensus 2 ~~~~~~~~~~~~~~----------~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~------------- 58 (431)
+++++.++.+.|+. ..+.+.+...+.+|+.+.|+|++|||||+++..++-......+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 35566666666642 2345667777889999999999999999888777643221100
Q ss_pred -------CcEEEEeCchh--------HHHHHHhH---------------HHHHHhCCccCCeEeEeEeecCCCChhHhHH
Q 014085 59 -------GKLIGVTQPRR--------VAAVTVAK---------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (431)
Q Consensus 59 -------~~~v~v~~p~~--------~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (431)
...+.++.... ....+... .+.+... .++..-..........+...+.+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~-~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMA-KVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHH-HCCCChHHhcCCCccCCHHHHHH
Confidence 01122222110 00011100 0000000 01110001112234456667777
Q ss_pred HHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHHH
Q 014085 109 EALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 109 ~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
..++...+.+.+++|+||- ..+......++++++++..
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~ 202 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ 202 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 7777777889999999994 4445555677777776654
No 324
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=0.00061 Score=63.25 Aligned_cols=50 Identities=20% Similarity=0.086 Sum_probs=37.3
Q ss_pred hhhHHHhhccCChH--HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIA--SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~--~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++.. ++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566666666532 345666677789999999999999999998777643
No 325
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.17 E-value=0.0012 Score=62.42 Aligned_cols=32 Identities=38% Similarity=0.432 Sum_probs=25.4
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+...+..|++++++|||||||||++..++...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 34456689999999999999999887666443
No 326
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00049 Score=64.51 Aligned_cols=48 Identities=25% Similarity=0.240 Sum_probs=34.8
Q ss_pred hHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 ~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 3 KFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred EEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34445555542 1355667777889999999999999999988777633
No 327
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.00017 Score=69.97 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=78.0
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEeCc
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVTQP 67 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~~p 67 (431)
++++.+.++.++.....+.+...+.+|+.+.|.||+||||||++..+.-...... ..+.+.++..
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4556666666654445556677788999999999999999999877763322110 0112222221
Q ss_pred hhHHHH--HHhHHHH------------------HHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 68 RRVAAV--TVAKRVA------------------EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 68 ~~~l~~--~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
...+.- .+.+.+. +... .++. .++........+..++.+..+......+.+++++||-
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~-~l~L-~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLG-LVHM-QEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HcCC-chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 110000 0111111 0000 0011 1122223345677777777788888889999999993
Q ss_pred --CcCccchHHHHHHHHHHHH
Q 014085 128 --HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 128 --h~~~~~~~~~~~~~~~~~~ 146 (431)
+.+......+...++++..
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~ 197 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILE 197 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 4444444555566665543
No 328
>PRK09183 transposase/IS protein; Provisional
Probab=97.16 E-value=0.0041 Score=57.24 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=27.5
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
+.+|+++++.||+|+|||+++..+...... .+..+.++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 567899999999999999887666433221 244565554
No 329
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=0.0004 Score=64.80 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=38.6
Q ss_pred hhhHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5667777777753 3456667778889999999999999999988777633
No 330
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.0058 Score=55.45 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=48.7
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
..+++.|++|+|||+++..+...... .+..++++.. ..+.......+ .. ..... ..+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it~-~~l~~~l~~~~----~~-------------~~~~~-~~~l~ 158 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIITV-ADIMSAMKDTF----SN-------------SETSE-EQLLN 158 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEH-HHHHHHHHHHH----hh-------------ccccH-HHHHH
Confidence 47899999999999777665554322 2455666532 22222221111 00 00111 11211
Q ss_pred HhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 110 ALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 110 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
.+.+++++|+||++... .+++-..++-.++..|
T Consensus 159 -----~l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 159 -----DLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRR 191 (244)
T ss_pred -----HhccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHH
Confidence 14469999999998644 3444444555555433
No 331
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.15 E-value=0.01 Score=54.75 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.++++||+|+|||+++..+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3478999999999999877666544
No 332
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.15 E-value=0.00051 Score=63.98 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=34.2
Q ss_pred hHHHhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 5 KILQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 5 ~~~~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 3 ETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred EEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34445555532 235556667788999999999999999998877763
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.14 E-value=0.012 Score=55.76 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (431)
++.++++||+|+||||++..+...... .+..+.++. +.+..+.++...+....+. ++....... .....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~~~~~-dpa~~ 184 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQKEGA-DPASV 184 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEEeCCCC-CHHHH
Confidence 567889999999999887666654432 233444442 3333333333333333332 222221111 11111
Q ss_pred HHHHhcccCCCCCcEEEEecCCcCc
Q 014085 107 IKEALLDPYLSRYSAIIVDEAHERT 131 (431)
Q Consensus 107 ~~~~~~~~~~~~~~~lViDEah~~~ 131 (431)
....+......+++++++|=+....
T Consensus 185 v~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 185 AFDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 1222222234679999999986433
No 334
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.13 E-value=0.12 Score=56.68 Aligned_cols=63 Identities=22% Similarity=0.179 Sum_probs=46.7
Q ss_pred ccCChHHHHHHHHHHHh-CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHH
Q 014085 11 KSLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTV 75 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~-~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~ 75 (431)
..+.+.+-|.+++..+. .++..+|+|+.|+||||++..+.... ...+..++.+.|+--.+...
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~--e~~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAW--EAAGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEcCcHHHHHHH
Confidence 34678899999998875 46788999999999998876654322 12356788888887766444
No 335
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.12 E-value=0.00029 Score=66.47 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=34.7
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++...+.+.+...+.+|+.+.+.||+||||||++..+.-.
T Consensus 4 ~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 4 RVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 344445555433445556667789999999999999999998877643
No 336
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00049 Score=63.93 Aligned_cols=143 Identities=20% Similarity=0.158 Sum_probs=76.9
Q ss_pred hhhHHHhhccCC--hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEEE
Q 014085 3 RQKILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIG 63 (431)
Q Consensus 3 ~~~~~~~~~~~~--~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v~ 63 (431)
++++.+..+.++ -.++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 455566666664 23456667777889999999999999999988777644221100 11233
Q ss_pred EeCchhH-HH--HHHhHHHHH---HhCCc----------cCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEE
Q 014085 64 VTQPRRV-AA--VTVAKRVAE---ESGVE----------LGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIV 124 (431)
Q Consensus 64 v~~p~~~-l~--~~~~~~~~~---~~~~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVi 124 (431)
+++.... .. ....+.+.- ..+.. .....+. ........+..++.+..+....+.+.+++++
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3332110 00 011111100 00000 0000111 1112234566666666677777888999999
Q ss_pred ecC--CcCccchHHHHHHHHHHH
Q 014085 125 DEA--HERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 125 DEa--h~~~~~~~~~~~~~~~~~ 145 (431)
||. +.+......+..+++++.
T Consensus 167 DEP~~gLD~~~~~~l~~~l~~~~ 189 (271)
T PRK13632 167 DESTSMLDPKGKREIKKIMVDLR 189 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHH
Confidence 994 444555566777777654
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.11 E-value=0.0003 Score=73.46 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=44.0
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|.++++.+..+.|+..++-+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 1 m~~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 1 MSLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CcEEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 6677888888888776677788888889999999999999999998777644
No 338
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.10 E-value=0.0033 Score=55.59 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc--ccCCc-----------------EEEEeCchhHHHH--HH
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGK-----------------LIGVTQPRRVAAV--TV 75 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~-----------------~v~v~~p~~~l~~--~~ 75 (431)
++.+.+...+.+|+.+.|.||+||||||++..+.-.... ...|. .+.+++....... -+
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 100 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTV 100 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcH
Confidence 345566667789999999999999999988776654331 11121 1112111100000 00
Q ss_pred hHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHHH
Q 014085 76 AKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
.+.+..... .. ........+..++.+..++...+.+.+++++||- ..+......+..+++++..
T Consensus 101 ~~~l~~~~~--~~-----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~ 166 (202)
T cd03233 101 RETLDFALR--CK-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166 (202)
T ss_pred HHHHhhhhh--hc-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 011100000 00 1111223455666666677777888999999993 3344445666677766543
No 339
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.00079 Score=68.61 Aligned_cols=140 Identities=18% Similarity=0.120 Sum_probs=81.4
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCc-------------------EEE
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK-------------------LIG 63 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~-------------------~v~ 63 (431)
++++.+..+.|+..++-+.+...+.+|+.+.|.||+||||||++..+.-..... .|. .+.
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~-~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT-KGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC-ccEEEECCEECCCCCHHHHHHCCeE
Confidence 567777777776555667788888899999999999999999987776432211 111 122
Q ss_pred EeCchhH-----HHHHHhH----------------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCC
Q 014085 64 VTQPRRV-----AAVTVAK----------------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYL 116 (431)
Q Consensus 64 v~~p~~~-----l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (431)
+++.... .+.+... .+..... .++.. ..........+..++.+..++....
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLL-RVGLK-VDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHH-HcCCC-CCcccchhhCCHHHHHHHHHHHHHh
Confidence 2221100 0000000 0000000 00000 0111122345556666666677778
Q ss_pred CCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 117 SRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 117 ~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
.+.+++++|| ++.+......+.++++++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 192 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR 192 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999 6777777788888888764
No 340
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.00026 Score=64.69 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=39.8
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+++.+..+.++-.+.-.++...+.+|+.+.+.||+||||||++..+.-
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 556667777777776668888899999999999999999999877763
No 341
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.09 E-value=0.001 Score=59.76 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=34.9
Q ss_pred HHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 6 ILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 6 ~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3444555542 2466677778889999999999999999988777643
No 342
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.00025 Score=65.67 Aligned_cols=50 Identities=24% Similarity=0.247 Sum_probs=39.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++...+.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 7 ~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 7 RLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred EEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 34556666667655567778888889999999999999999988777644
No 343
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.08 E-value=0.00082 Score=63.52 Aligned_cols=46 Identities=9% Similarity=0.161 Sum_probs=33.1
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
..+...+.+..++...+.+.+++++|| .+.+......+..+++++.
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 345566666666777788999999999 4555666677777777653
No 344
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.012 Score=55.96 Aligned_cols=37 Identities=27% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
.++++++.||||+|||+++..+...... .+..+++++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~--~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLD--RGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEE
Confidence 4689999999999999877655544321 245566654
No 345
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.08 E-value=0.0052 Score=55.30 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
..+...+.+..+....+.+.+++++|| .+.+......+..+++++.
T Consensus 113 ~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 355566666666667788999999999 4555555667777776653
No 346
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00073 Score=63.12 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=39.6
Q ss_pred hhhHHHhhccCCh------HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~------~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+. .++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5667777777752 3467778888889999999999999999988777633
No 347
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.00067 Score=68.96 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=80.7
Q ss_pred chhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCC-------------------cEE
Q 014085 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDG-------------------KLI 62 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~-------------------~~v 62 (431)
+++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-..... .| ..+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEECCCCCHHHHHhCCE
Confidence 4566777777776555667778888899999999999999999987776432211 11 112
Q ss_pred EEeCchhHHHH--HHhHHHH---------------------HHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCC
Q 014085 63 GVTQPRRVAAV--TVAKRVA---------------------EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRY 119 (431)
Q Consensus 63 ~v~~p~~~l~~--~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (431)
.+++....+.. ...+.+. .... .++.. ..........+..++.+..++...+.+.
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLE-HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHH-HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 22221100000 0000000 0000 00000 0011112335666666666777778899
Q ss_pred cEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 120 SAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 120 ~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
+++++|| ++.+......+.++++++.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~ 187 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELR 187 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 5666667778888887763
No 348
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.06 E-value=0.00049 Score=63.72 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355667778889999999999999999988777643
No 349
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.06 E-value=0.00035 Score=71.89 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=43.6
Q ss_pred chhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 2 PRQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+++++.+..+.|+ -.++.+.+...+.+|+.+.|+||+||||||++..+.-..
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3788888888887 566777888889999999999999999999988777543
No 350
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.05 E-value=0.00033 Score=64.33 Aligned_cols=45 Identities=27% Similarity=0.339 Sum_probs=33.2
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++..++-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 5 DVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444434445566677889999999999999999988777643
No 351
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.05 E-value=0.0014 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.3
Q ss_pred EEEEcCCCCChhccHhHHhhhc
Q 014085 32 LIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 32 ~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+++.||+|+|||+++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999998887776664
No 352
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.05 E-value=0.00056 Score=62.38 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=34.0
Q ss_pred EEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHH
Q 014085 32 LIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (431)
Q Consensus 32 ~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~ 72 (431)
.+|-||||||||-++..++..........+|++++|...++
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 57899999999988888887777666677899998887665
No 353
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.05 E-value=0.00056 Score=64.60 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=36.1
Q ss_pred hhHHHhhccCChH-----HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPIA-----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~~-----~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.|+.. +..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4455555666431 356667777889999999999999999888777643
No 354
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.04 E-value=0.00076 Score=63.30 Aligned_cols=142 Identities=17% Similarity=0.109 Sum_probs=76.1
Q ss_pred hHHHhhccCChH-----HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------------
Q 014085 5 KILQQRKSLPIA-----SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--------------------- 58 (431)
Q Consensus 5 ~~~~~~~~~~~~-----~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~--------------------- 58 (431)
++.+..+.++.. ++.+.+...+.+|+.+.|.||+||||||++..+.-......+
T Consensus 8 ~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 87 (289)
T PRK13645 8 ILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKR 87 (289)
T ss_pred EEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHH
Confidence 444455555432 255666777889999999999999999988777643211100
Q ss_pred -CcEEEEeCchh--HHH-HHHhHHHH---HHhCC--------------ccCCeEeEeEeecCCCChhHhHHHHhcccCCC
Q 014085 59 -GKLIGVTQPRR--VAA-VTVAKRVA---EESGV--------------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLS 117 (431)
Q Consensus 59 -~~~v~v~~p~~--~l~-~~~~~~~~---~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (431)
...+.+++... .+. ..+.+.+. ...+. .++...++........+..++.+..++...+.
T Consensus 88 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~ 167 (289)
T PRK13645 88 LRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAM 167 (289)
T ss_pred HhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 01233333221 010 01111110 00000 00100011112223456666777777777788
Q ss_pred CCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 118 RYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 118 ~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
+.+++++|| .+.+......+..+++++..
T Consensus 168 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (289)
T PRK13645 168 DGNTLVLDEPTGGLDPKGEEDFINLFERLNK 198 (289)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 899999999 45555566777777776543
No 355
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.04 E-value=0.0021 Score=54.30 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=23.4
Q ss_pred EEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 32 LIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 32 ~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
++|.||+|+|||+++..++..... .+..++++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEEC
Confidence 678999999999887776655433 2344555543
No 356
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.04 E-value=0.00042 Score=61.83 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=27.3
Q ss_pred HHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 21 ~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+...+.+|+.+.+.||+||||||++..+.-.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56677789999999999999999998777643
No 357
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.03 E-value=0.00033 Score=67.63 Aligned_cols=140 Identities=15% Similarity=0.158 Sum_probs=75.9
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc--C---------------CcEEEEeCc
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR--D---------------GKLIGVTQP 67 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~--~---------------~~~v~v~~p 67 (431)
++.+..+.|+-....+.+...+.+|+.+.+.||+||||||++..+.-...... + .+.+.++..
T Consensus 7 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 7 RIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred EEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 34445555544344555666778999999999999999999877764322111 0 011222211
Q ss_pred hhH-----HHHHHhH---------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 68 RRV-----AAVTVAK---------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 68 ~~~-----l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
... .+.+... ++.+.... ++. ..+..+.....+..++.+..++..+..+.+++++||-
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~-~gL-~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKL-VGL-GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCC-CchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 111 1111110 00000000 011 1112223345667777777788888899999999993
Q ss_pred --CcCccchHHHHHHHHHHHH
Q 014085 128 --HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 128 --h~~~~~~~~~~~~~~~~~~ 146 (431)
..+......+...++++..
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHE 185 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 3444555666666666543
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0098 Score=57.82 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=47.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (431)
+..++++||||+||||++..++...... .+..+.++ -+.+..+.++....+...+... . . ......
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~---~--~------~~~~~~ 290 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF---Y--P------VKDIKK 290 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHHhcCCCe---e--e------hHHHHH
Confidence 4568899999999998887777643222 23344443 3444555555555554444321 0 0 001122
Q ss_pred HHHHhcccCCCCCcEEEEecCCc
Q 014085 107 IKEALLDPYLSRYSAIIVDEAHE 129 (431)
Q Consensus 107 ~~~~~~~~~~~~~~~lViDEah~ 129 (431)
+...+. ..+++++++|=+..
T Consensus 291 l~~~l~---~~~~D~VLIDTaGr 310 (432)
T PRK12724 291 FKETLA---RDGSELILIDTAGY 310 (432)
T ss_pred HHHHHH---hCCCCEEEEeCCCC
Confidence 222222 25689999997643
No 359
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.0003 Score=72.02 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=38.5
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++..++-+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455566666655566777788889999999999999999998877644
No 360
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00068 Score=63.02 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=36.7
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++ ..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555566664 23455667777889999999999999999988777643
No 361
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.00 E-value=0.0046 Score=57.11 Aligned_cols=106 Identities=23% Similarity=0.235 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccC-----CcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCCh-
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRD-----GKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTST- 103 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 103 (431)
.+++|+|+||.|||+++..+...+....+ ...+++-.|........+..+....+..... ......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~--------~~~~~~~ 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP--------RDRVAKL 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC--------CCCHHHH
Confidence 47999999999999988888766554322 1244444555655556666666666554221 111111
Q ss_pred hHhHHHHhcccCCCCCcEEEEecCCcC----ccchHHHHHHHHHHHH
Q 014085 104 STRIKEALLDPYLSRYSAIIVDEAHER----TVHTDVLLGLLKKVQN 146 (431)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~lViDEah~~----~~~~~~~~~~~~~~~~ 146 (431)
..+...++. .-+++++||||+|.. ......+++.+|.+.+
T Consensus 134 ~~~~~~llr---~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 134 EQQVLRLLR---RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN 177 (302)
T ss_pred HHHHHHHHH---HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh
Confidence 111223332 245899999999952 2334567777777643
No 362
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.0049 Score=57.74 Aligned_cols=142 Identities=20% Similarity=0.157 Sum_probs=76.6
Q ss_pred hHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------------
Q 014085 5 KILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD--------------------- 58 (431)
Q Consensus 5 ~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~--------------------- 58 (431)
++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+
T Consensus 4 ~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (286)
T PRK13646 4 RFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPV 83 (286)
T ss_pred EEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHH
Confidence 34445555532 2466677778889999999999999999998877643221110
Q ss_pred CcEEEEeCchh--HHH-HHHhHHHHH---HhCC----------ccCCeEeEe----EeecCCCChhHhHHHHhcccCCCC
Q 014085 59 GKLIGVTQPRR--VAA-VTVAKRVAE---ESGV----------ELGQRVGYS----IRFDDRTSTSTRIKEALLDPYLSR 118 (431)
Q Consensus 59 ~~~v~v~~p~~--~l~-~~~~~~~~~---~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 118 (431)
...+.+++... .+. ....+.+.- ..+. ..-...|+. .......+..++.+..++.....+
T Consensus 84 ~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~ 163 (286)
T PRK13646 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMN 163 (286)
T ss_pred HhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhC
Confidence 01223332211 010 011111100 0000 000011111 112234566666777777777889
Q ss_pred CcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 119 YSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 119 ~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
.+++++|| ...+......+..+++++..
T Consensus 164 p~illlDEPt~~LD~~~~~~l~~~l~~l~~ 193 (286)
T PRK13646 164 PDIIVLDEPTAGLDPQSKRQVMRLLKSLQT 193 (286)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999 34455556677777776643
No 363
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.00 E-value=0.00054 Score=64.02 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=34.6
Q ss_pred hHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 4 ~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 4 NLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34455555542 2345566677789999999999999999988777643
No 364
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00084 Score=62.80 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=39.1
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++ -.++.+.+...+.+|+.+.|.||+|||||+++..+.-.
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 556667777775 34566777788889999999999999999888777643
No 365
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.011 Score=54.07 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=53.4
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
.+..++++++.||+|+|||+++..+..... ..+..+++++. ..++.+....... ....
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~-~el~~~Lk~~~~~-------------------~~~~ 158 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA-PDLLSKLKAAFDE-------------------GRLE 158 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH-HHHHHHHHHHHhc-------------------CchH
Confidence 444788999999999999977766655544 33566766653 3344343332211 1112
Q ss_pred HhHHHHhcccCCCCCcEEEEecCCc--Cc-cchHHHHHHHHHH
Q 014085 105 TRIKEALLDPYLSRYSAIIVDEAHE--RT-VHTDVLLGLLKKV 144 (431)
Q Consensus 105 ~~~~~~~~~~~~~~~~~lViDEah~--~~-~~~~~~~~~~~~~ 144 (431)
.++.. .+.+++++|+||.-- .+ +..+.+..++-+.
T Consensus 159 ~~l~~-----~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r 196 (254)
T COG1484 159 EKLLR-----ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRR 196 (254)
T ss_pred HHHHH-----HhhcCCEEEEecccCccCCHHHHHHHHHHHHHH
Confidence 22332 245599999999753 22 2335555544443
No 366
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.99 E-value=0.0016 Score=59.26 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455666677789999999999999999998877643
No 367
>PRK05642 DNA replication initiation factor; Validated
Probab=96.99 E-value=0.0046 Score=56.05 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
..+++.||+|+|||+++..+..... ..+..++++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeH
Confidence 4688999999999988765543221 12345666553
No 368
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0008 Score=60.97 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=73.2
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------CcEEEEeCchhHHH
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---------------GKLIGVTQPRRVAA 72 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---------------~~~v~v~~p~~~l~ 72 (431)
+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++......
T Consensus 5 ~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~ 84 (232)
T cd03300 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALF 84 (232)
T ss_pred eEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccC
Confidence 344444444456667777889999999999999999988777644322110 11223322111111
Q ss_pred H--HHhHHHH---HHhC--------------CccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecCC--cCc
Q 014085 73 V--TVAKRVA---EESG--------------VELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH--ERT 131 (431)
Q Consensus 73 ~--~~~~~~~---~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah--~~~ 131 (431)
. ...+.+. ...+ ..++. ..+........+..++.+..+....+.+.+++++||.- .+.
T Consensus 85 ~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~ 163 (232)
T cd03300 85 PHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL-EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163 (232)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 0 0111110 0000 00011 01111122345666666677777778899999999964 334
Q ss_pred cchHHHHHHHHHHHH
Q 014085 132 VHTDVLLGLLKKVQN 146 (431)
Q Consensus 132 ~~~~~~~~~~~~~~~ 146 (431)
.....+..+++.+..
T Consensus 164 ~~~~~l~~~l~~~~~ 178 (232)
T cd03300 164 KLRKDMQLELKRLQK 178 (232)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445666667666543
No 369
>PRK10536 hypothetical protein; Provisional
Probab=96.99 E-value=0.0012 Score=59.62 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhH
Q 014085 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~ 70 (431)
.|.+..|...+..+..++.+++.||+|+|||+++..+...........++++.-|.-.
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 4567889999999999999999999999999877666654433333556777766543
No 370
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.99 E-value=0.00038 Score=67.05 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=76.5
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------CcEEEEeCch
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---------------GKLIGVTQPR 68 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---------------~~~v~v~~p~ 68 (431)
+++.+.++.|+.....+.+...+.+|+.+.|.||+||||||++..+.-......+ .+.+.++...
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~ 82 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQH 82 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecC
Confidence 3444555555544455566667789999999999999999998877744321100 0122222211
Q ss_pred hHHH--HHHhHHHH----------------------HHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEE
Q 014085 69 RVAA--VTVAKRVA----------------------EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIV 124 (431)
Q Consensus 69 ~~l~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVi 124 (431)
..+. ..+.+.+. +... .++. ..+........+..++.+..++.....+.+++++
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~L-~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLE-MVQL-AHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHH-HcCC-chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1110 00011110 0000 0000 0111222334566667777777778889999999
Q ss_pred ec--CCcCccchHHHHHHHHHHHH
Q 014085 125 DE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 125 DE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
|| ...+......+...++++..
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHH
Confidence 99 34444555666677776543
No 371
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=96.99 E-value=0.00056 Score=62.23 Aligned_cols=45 Identities=22% Similarity=0.227 Sum_probs=33.5
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++..++.+.+...+.+|+.+.|.||+|||||+++..+.-.
T Consensus 5 ~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 5 NISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344444444455666667889999999999999999988777643
No 372
>PRK06893 DNA replication initiation factor; Validated
Probab=96.98 E-value=0.0035 Score=56.65 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+++.||+|+|||+++..+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999887666544
No 373
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.98 E-value=0.0013 Score=67.55 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=66.1
Q ss_pred HHhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEEEEeCch
Q 014085 7 LQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIGVTQPR 68 (431)
Q Consensus 7 ~~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v~v~~p~ 68 (431)
.+....++. .++.+.+...+.+|+.+.++||+||||||++..+........+ ...+.+++..
T Consensus 326 ~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 405 (547)
T PRK10522 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTD 405 (547)
T ss_pred EEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecC
Confidence 344444542 2356667777889999999999999999988777643321110 0123333322
Q ss_pred hHHHHH------------HhHHHHHHhCCccCCeEeEeEe--ecCCCChhHhHHHHhcccCCCCCcEEEEecC
Q 014085 69 RVAAVT------------VAKRVAEESGVELGQRVGYSIR--FDDRTSTSTRIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 69 ~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa 127 (431)
..+... ....+.+..+.. ..+..... .....+..++.+..+++..+.+.+++++||+
T Consensus 406 ~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ 476 (547)
T PRK10522 406 FHLFDQLLGPEGKPANPALVEKWLERLKMA--HKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEW 476 (547)
T ss_pred hhHHHHhhccccCchHHHHHHHHHHHcCCc--hhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 211110 011111111111 11110000 0235677888888888888999999999996
No 374
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.98 E-value=0.001 Score=60.46 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 17 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 355566677889999999999999999998777644
No 375
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.0014 Score=64.81 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=44.9
Q ss_pred chhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
+++++.+..|.|+..+..+.+...+.+|+...+.|.||+||||++..+.
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLs 55 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILS 55 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHh
Confidence 3678889999999999999999999999999999999999999887665
No 376
>PLN03073 ABC transporter F family; Provisional
Probab=96.97 E-value=0.00044 Score=72.74 Aligned_cols=49 Identities=18% Similarity=0.093 Sum_probs=40.1
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
++++.++.+.|+..++.+.+...+..|+.+.++||+||||||++..+.-
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4566677777766667777888888999999999999999999887764
No 377
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00094 Score=62.15 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=35.4
Q ss_pred hHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++ ..++-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 ~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 3 RLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4445555553 23455667777889999999999999999988777643
No 378
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.001 Score=62.41 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=78.4
Q ss_pred hhHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-------------------C
Q 014085 4 QKILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-------------------G 59 (431)
Q Consensus 4 ~~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-------------------~ 59 (431)
+++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+ .
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 344455555543 2456666777889999999999999999988777633211100 0
Q ss_pred cEEEEeCchh--HHH-HHHhHHHH------------------HHhCCccCCeE-eEeEeecCCCChhHhHHHHhcccCCC
Q 014085 60 KLIGVTQPRR--VAA-VTVAKRVA------------------EESGVELGQRV-GYSIRFDDRTSTSTRIKEALLDPYLS 117 (431)
Q Consensus 60 ~~v~v~~p~~--~l~-~~~~~~~~------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (431)
..+.+++... ... ..+.+.+. .... .++... ..........+...+.+..++.....
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~-~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN-IVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHH-HcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 1223332211 000 00111110 0000 011100 01112223456677777777777888
Q ss_pred CCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 118 RYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 118 ~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
+.+++++|| .+.+......+.++++++..
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHK 192 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 999999999 45556667778888877654
No 379
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00062 Score=61.72 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=33.0
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++... ..+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 ~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 3 KLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred EEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444555554222 256677789999999999999999988777643
No 380
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00067 Score=63.44 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=37.7
Q ss_pred hhhHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++. .+..+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 4556666666643 2456667777889999999999999999988777644
No 381
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.95 E-value=0.004 Score=59.46 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=32.7
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHH
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l 71 (431)
+...+..+++++|+|||||||||++..++..... ..+++.+....++
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHHHHcccCC---CCCEEEECCCccc
Confidence 4445567899999999999999998777655432 3345665554443
No 382
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0022 Score=63.33 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHhCCC---EEEEEcCCCCChhccHhHHhhhc
Q 014085 24 EEVRKND---ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 24 ~~~~~g~---~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+..++ .++++||.|+|||+++..++...
T Consensus 32 ~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 32 NALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3344554 37999999999998886666543
No 383
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.95 E-value=0.0035 Score=59.70 Aligned_cols=46 Identities=24% Similarity=0.127 Sum_probs=31.6
Q ss_pred HHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHH
Q 014085 23 VEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (431)
Q Consensus 23 ~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l 71 (431)
...+..+.+++++|+|||||||++..++..... ..+++.+.-..++
T Consensus 154 ~~~v~~~~nili~G~tgSGKTTll~aL~~~ip~---~~ri~tiEd~~El 199 (332)
T PRK13900 154 EHAVISKKNIIISGGTSTGKTTFTNAALREIPA---IERLITVEDAREI 199 (332)
T ss_pred HHHHHcCCcEEEECCCCCCHHHHHHHHHhhCCC---CCeEEEecCCCcc
Confidence 344557889999999999999998776654432 3456665444443
No 384
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.94 E-value=0.0012 Score=64.64 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=34.3
Q ss_pred CCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHHH
Q 014085 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
...+..++.+..++..+..+.+++++||- +........+.++++++..
T Consensus 163 ~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~ 212 (400)
T PRK10070 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA 212 (400)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 44667777777777778889999999994 4455555667777766543
No 385
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=96.94 E-value=0.00089 Score=60.15 Aligned_cols=36 Identities=33% Similarity=0.360 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+.+...+.+|+.+.|.||+|||||+++..+.-.
T Consensus 19 ~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345666677889999999999999999888777643
No 386
>PF13173 AAA_14: AAA domain
Probab=96.93 E-value=0.0061 Score=49.56 Aligned_cols=26 Identities=38% Similarity=0.482 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
++.++|.||.|+||||++..++....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57889999999999999877765543
No 387
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.93 E-value=0.00011 Score=62.88 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=42.0
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccH
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL 46 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~ 46 (431)
|..+.+.++.|.|.-+++-..+...+.+|+.+.+.||+|+||||++
T Consensus 2 ~~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~F 47 (243)
T COG1137 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTF 47 (243)
T ss_pred CcEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEE
Confidence 4567788899999999999999999999999999999999999877
No 388
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.92 E-value=0.0044 Score=56.23 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
.+.++++.||+|+|||+++..+...... .+..+.+++.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEH
Confidence 3468999999999999887665544322 2445666543
No 389
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.89 E-value=0.006 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++.+++.||+|+|||+++..+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999887666554
No 390
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.89 E-value=0.0014 Score=63.31 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=34.0
Q ss_pred cCCCChhHhHHHHhcccCCCCCcEEEEecCC--cCccchHHHHHHHHHHHH
Q 014085 98 DDRTSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lViDEah--~~~~~~~~~~~~~~~~~~ 146 (431)
....+..++.+..++..+..+.+++++||.- .+......+...+.++..
T Consensus 127 p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 127 PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177 (363)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3456677777777777788899999999953 344445666666666543
No 391
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.88 E-value=0.0071 Score=64.23 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=90.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC--cEEEEecCcccccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF--RKVILATNIAETSVTI 329 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~--~~vLvaT~~~~~Gvdi 329 (431)
..+.++|||..-.+..+-|-.+|+-+ |+--+-+.|.+.-++|...+++|..+. ...|++|--...|||+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyH---------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNL 1344 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYH---------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINL 1344 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhc---------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccc
Confidence 44778999999899888888888887 999999999999999999999998664 3678899999999999
Q ss_pred CCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhh
Q 014085 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (431)
Q Consensus 330 p~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~ 389 (431)
-+.+.||= ||++.+-. +..-..+.-||+|++ ..=+.|+|+++...
T Consensus 1345 tgADTVvF--------YDsDwNPt----MDaQAQDrChRIGqt---RDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1345 TGADTVVF--------YDSDWNPT----MDAQAQDRCHRIGQT---RDVHIYRLISERTI 1389 (1958)
T ss_pred ccCceEEE--------ecCCCCch----hhhHHHHHHHhhcCc---cceEEEEeeccchH
Confidence 88999985 99887632 233445555666554 24568999987643
No 392
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0011 Score=63.03 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=37.1
Q ss_pred hhhHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+. .++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455556666542 2466677777889999999999999999988777643
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.86 E-value=0.0028 Score=61.67 Aligned_cols=141 Identities=21% Similarity=0.301 Sum_probs=82.7
Q ss_pred chhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CCcEEEEeCchhHHHH---
Q 014085 2 PRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPRRVAAV--- 73 (431)
Q Consensus 2 ~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~~~v~v~~p~~~l~~--- 73 (431)
+.+++.+..|.|+..-.-..+...+.+|+.-.+.|.+|+||||+...+.-...... +++.+-+-.|..+...
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 35677778888887777778888999999999999999999988766553322211 2344444444443321
Q ss_pred ---HHhH---------------------------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCC
Q 014085 74 ---TVAK---------------------------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLS 117 (431)
Q Consensus 74 ---~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (431)
|.+. .+...++..+.... ...+-.....+++. +...+..
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~---~V~dLsVG~qQRVE--IlKaLyr 157 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDA---KVADLSVGEQQRVE--ILKALYR 157 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccc---eeecCCcchhHHHH--HHHHHhc
Confidence 1111 11111111110000 00011111122222 2223567
Q ss_pred CCcEEEEec--CCcCccchHHHHHHHHHHHHh
Q 014085 118 RYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 118 ~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
+.+++|+|| +...+...+.++.+++.+.+.
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~ 189 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAE 189 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 799999999 778888999999999977653
No 394
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00044 Score=72.20 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=78.8
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc------CCcEEEEeCchh--HHH-H-
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------DGKLIGVTQPRR--VAA-V- 73 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~------~~~~v~v~~p~~--~l~-~- 73 (431)
+++.+..+.|+...+.+.+...+.+|+.+.|+||+||||||++..+.-...... .+..+.+++... .+. .
T Consensus 313 l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~ 392 (638)
T PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392 (638)
T ss_pred EEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccc
Confidence 344445555544445566777788999999999999999999988775432211 112233333211 000 0
Q ss_pred HHhHHHH------------HHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHH
Q 014085 74 TVAKRVA------------EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLG 139 (431)
Q Consensus 74 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~ 139 (431)
.....+. .... .++.............+..++.+..++...+.+.+++++|| .|.+......+.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~L~-~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~ 471 (638)
T PRK10636 393 SPLQHLARLAPQELEQKLRDYLG-GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471 (638)
T ss_pred hHHHHHHHhCchhhHHHHHHHHH-HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 0000010 0000 00100001111223456677777777777788999999999 6777777777777
Q ss_pred HHHHH
Q 014085 140 LLKKV 144 (431)
Q Consensus 140 ~~~~~ 144 (431)
+++.+
T Consensus 472 ~L~~~ 476 (638)
T PRK10636 472 ALIDF 476 (638)
T ss_pred HHHHc
Confidence 77654
No 395
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.85 E-value=0.00093 Score=69.80 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=40.3
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+.+..+.|....+-+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4556667777766677788888999999999999999999999887754
No 396
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.85 E-value=0.0075 Score=60.38 Aligned_cols=38 Identities=21% Similarity=0.063 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
..+++.||+|+|||+++..+.........+..++++..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 46899999999999887666655433222445666654
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.84 E-value=0.021 Score=56.40 Aligned_cols=92 Identities=30% Similarity=0.396 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
..++++|++|+||||.+..++.... ..+..+.++. +.+..+.++...++...+..+ .+ ..........+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~--~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~----~~~~~d~~~i~ 166 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFK--KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG----DPDNKDAVEIA 166 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee----cCCccCHHHHH
Confidence 3678999999999977766654332 2233444443 334444444444444443321 10 01111222222
Q ss_pred HHHhcccCCCCCcEEEEecCCcCcc
Q 014085 108 KEALLDPYLSRYSAIIVDEAHERTV 132 (431)
Q Consensus 108 ~~~~~~~~~~~~~~lViDEah~~~~ 132 (431)
...+.. ....+++|+|.+.....
T Consensus 167 ~~al~~--~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 167 KEGLEK--FKKADVIIVDTAGRHAL 189 (437)
T ss_pred HHHHHH--hhcCCEEEEECCCcccc
Confidence 333322 22349999999954333
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.84 E-value=0.018 Score=56.39 Aligned_cols=98 Identities=19% Similarity=0.249 Sum_probs=48.3
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
..++++|++|+||||.+..+..... ..+.++.++. +.+..+.++.+.++...+..+ .... .........
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~--~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~------~~~~-~~~dp~~i~ 171 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ--RKGFKPCLVCADTFRAGAFDQLKQNATKARIPF------YGSY-TESDPVKIA 171 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEcCcccchhHHHHHHHHhhccCCeE------Eeec-CCCCHHHHH
Confidence 3578999999999977766654332 2244444443 445455444444444333221 1001 111111111
Q ss_pred HHHhcccCCCCCcEEEEecCCcCccchHH
Q 014085 108 KEALLDPYLSRYSAIIVDEAHERTVHTDV 136 (431)
Q Consensus 108 ~~~~~~~~~~~~~~lViDEah~~~~~~~~ 136 (431)
...+......+++++++|=+........+
T Consensus 172 ~~~l~~~~~~~~DvViIDTaGr~~~d~~l 200 (429)
T TIGR01425 172 SEGVEKFKKENFDIIIVDTSGRHKQEDSL 200 (429)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCcchHHH
Confidence 11221111246899999998644444333
No 399
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.84 E-value=0.00099 Score=60.57 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345566667789999999999999999988777644
No 400
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.84 E-value=0.0015 Score=60.27 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=34.9
Q ss_pred hhHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++. ..+.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 20 i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 344444555543 2355566667789999999999999999988777643
No 401
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.83 E-value=0.00055 Score=70.41 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=77.2
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc------CCcEEEEeCchhH------H
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------DGKLIGVTQPRRV------A 71 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~------~~~~v~v~~p~~~------l 71 (431)
+++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-...... +...+.+++.... .
T Consensus 323 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 402 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 402 (552)
T ss_pred EEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCc
Confidence 334444444444445566777788999999999999999999877764422111 1112334433211 1
Q ss_pred HHHHhHHHHHHhCC--------ccCCeEeE----eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHH
Q 014085 72 AVTVAKRVAEESGV--------ELGQRVGY----SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVL 137 (431)
Q Consensus 72 ~~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~ 137 (431)
+.+.........+. ..-...+. ........+..++.+..++...+.+.+++++|| .|.+......+
T Consensus 403 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 482 (552)
T TIGR03719 403 VWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRAL 482 (552)
T ss_pred HHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Confidence 11111100000000 00000111 111223456677777777777788999999999 56666666777
Q ss_pred HHHHHHH
Q 014085 138 LGLLKKV 144 (431)
Q Consensus 138 ~~~~~~~ 144 (431)
.++++.+
T Consensus 483 ~~~l~~~ 489 (552)
T TIGR03719 483 EEALLEF 489 (552)
T ss_pred HHHHHHC
Confidence 7776654
No 402
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0022 Score=63.74 Aligned_cols=137 Identities=19% Similarity=0.161 Sum_probs=74.0
Q ss_pred HhhccCChH-HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-------------C----CcEEEEeCchh
Q 014085 8 QQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-------------D----GKLIGVTQPRR 69 (431)
Q Consensus 8 ~~~~~~~~~-~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-------------~----~~~v~v~~p~~ 69 (431)
+....++-. +.-..+...+..|+.++++|++||||||++..++-...... + .+.+.+++-..
T Consensus 325 ~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p 404 (559)
T COG4988 325 NLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404 (559)
T ss_pred ceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence 333344333 55567778888999999999999999998877763322100 0 01222222110
Q ss_pred --------------------HHHHHHhHH--HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec-
Q 014085 70 --------------------VAAVTVAKR--VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE- 126 (431)
Q Consensus 70 --------------------~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE- 126 (431)
+...+..++ +.++.....|...-. .......+..+..+..+.+.++++-+++++||
T Consensus 405 ~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~i-ge~G~~LSgGQ~QRlaLARAll~~~~l~llDEp 483 (559)
T COG4988 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVI-GEGGAGLSGGQAQRLALARALLSPASLLLLDEP 483 (559)
T ss_pred ccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchh-ccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 111111111 111111101111000 11223467778888888888999999999999
Q ss_pred -CCcCccchHHHHHHHHHHH
Q 014085 127 -AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 127 -ah~~~~~~~~~~~~~~~~~ 145 (431)
+|.+...-..+.+.+.++.
T Consensus 484 TA~LD~etE~~i~~~l~~l~ 503 (559)
T COG4988 484 TAHLDAETEQIILQALQELA 503 (559)
T ss_pred ccCCCHhHHHHHHHHHHHHH
Confidence 6654444455555555543
No 403
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0032 Score=68.57 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=90.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC--CcEEEEecCccccccccCCcE
Q 014085 256 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG--FRKVILATNIAETSVTIPGIK 333 (431)
Q Consensus 256 ~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g--~~~vLvaT~~~~~Gvdip~v~ 333 (431)
+++||++-.....-+...+... ++....++|+++.+.|...+..|.++ ..-++++|.+.+.|+|+-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 8999999999999999999886 67888999999999999999999986 456788888999999999999
Q ss_pred EEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChhh
Q 014085 334 YVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE 388 (431)
Q Consensus 334 ~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~ 388 (431)
+||. || .+.......|...|+.|.| +=.+|++++.+.
T Consensus 784 ~vi~--------~d----------~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 784 TVIL--------FD----------PWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred eEEE--------ec----------cccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9998 88 4667777888888888877 334777776654
No 404
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.81 E-value=0.00089 Score=59.51 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred hHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++. .+..+.+...+.+|+.+.|.||+|||||+++..+.-.
T Consensus 8 ~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 8 EVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34444555542 2456667777889999999999999999988777643
No 405
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.80 E-value=0.0008 Score=62.73 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=77.6
Q ss_pred hhhHHHhhccCCh---HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEE
Q 014085 3 RQKILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLI 62 (431)
Q Consensus 3 ~~~~~~~~~~~~~---~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v 62 (431)
++++.+..+.++. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 5566666666652 1356677778889999999999999999988777633221110 0112
Q ss_pred EEeCchhH-HH--HHHhHHHHHH---hCC--------------ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEE
Q 014085 63 GVTQPRRV-AA--VTVAKRVAEE---SGV--------------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAI 122 (431)
Q Consensus 63 ~v~~p~~~-l~--~~~~~~~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (431)
.+++.... .. ..+.+.+... .+. .++. ..+........+...+.+..++.....+.+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll 162 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM-LDFKTREPARLSGGQKQRVAVAGIIALRPEII 162 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-HhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 33222211 01 0111111100 000 0000 01111122345556666666667778889999
Q ss_pred EEecC--CcCccchHHHHHHHHHHHH
Q 014085 123 IVDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 123 ViDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
++||- .........+..+++++..
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~l~~ 188 (277)
T PRK13642 163 ILDESTSMLDPTGRQEIMRVIHEIKE 188 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 99994 4455556677777776643
No 406
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.80 E-value=0.0026 Score=66.99 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=49.3
Q ss_pred ccCChHHHHHHHHHHHh----C-----CCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhH
Q 014085 11 KSLPIASVEKRLVEEVR----K-----NDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~----~-----g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~ 77 (431)
..|+.++-|.++...+. . ++.++|.||||+||| |++|.+..... .+++++|.+.|..|.+|...
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~---~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA---EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH---cCCeEEEEcCCHHHHHHHHh
Confidence 45788899988666555 3 378999999999999 88887765432 25689999999999888753
No 407
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.80 E-value=0.0019 Score=61.19 Aligned_cols=67 Identities=22% Similarity=0.217 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc--cCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC--RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~--~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
++-|.+++.. ..++++|.|..|||||+.+..-+...... .....++++++++.++.++..++.....
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 5678888877 67789999999999996553322211111 2345799999999999999888877544
No 408
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.79 E-value=0.0071 Score=53.96 Aligned_cols=126 Identities=20% Similarity=0.265 Sum_probs=66.0
Q ss_pred HHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------CcEEEEeCchhHHHH--HHhHHHHHH-
Q 014085 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---------------GKLIGVTQPRRVAAV--TVAKRVAEE- 82 (431)
Q Consensus 21 ~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---------------~~~v~v~~p~~~l~~--~~~~~~~~~- 82 (431)
.+...+.+|+.+.|.||+||||||++..+.-......+ ...+.+++....+.. ...+.+...
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~ 95 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGL 95 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHh
Confidence 45566779999999999999999988777644321110 012333322211100 000111000
Q ss_pred -hCC-----------ccCCeEeE---eEeecCCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHH
Q 014085 83 -SGV-----------ELGQRVGY---SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 83 -~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~ 145 (431)
... ..-...+. ........+..++.+..++.....+.+++++||- +.+......+.++++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~ 175 (213)
T TIGR01277 96 HPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLC 175 (213)
T ss_pred hccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 000 00000111 1112234555666666666667888999999994 445555666777777664
Q ss_pred H
Q 014085 146 N 146 (431)
Q Consensus 146 ~ 146 (431)
.
T Consensus 176 ~ 176 (213)
T TIGR01277 176 S 176 (213)
T ss_pred H
Confidence 3
No 409
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.79 E-value=0.0048 Score=57.54 Aligned_cols=87 Identities=26% Similarity=0.347 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
.++.++++||||+||||++..++.......++..+.++. +.+..+.++...+....+..+. ... ...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----------~~~-~~~ 261 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----------VAR-DPK 261 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee----------ccC-CHH
Confidence 456889999999999988766665443221223444443 3333343444444444332210 011 112
Q ss_pred hHHHHhcccCCCCCcEEEEecC
Q 014085 106 RIKEALLDPYLSRYSAIIVDEA 127 (431)
Q Consensus 106 ~~~~~~~~~~~~~~~~lViDEa 127 (431)
.+...+. .+.+++++++|.+
T Consensus 262 ~l~~~l~--~~~~~d~vliDt~ 281 (282)
T TIGR03499 262 ELRKALD--RLRDKDLILIDTA 281 (282)
T ss_pred HHHHHHH--HccCCCEEEEeCC
Confidence 2333332 2345899999975
No 410
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.78 E-value=0.0026 Score=66.13 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhCC-CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 14 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.+.+.|.+++..+... ..++|.||+|+|||+++..++..... .+.+++++.|+..++++..+++..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~--~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK--RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4578899999888876 78899999999999776555544322 255799999999999998888765
No 411
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.78 E-value=0.0012 Score=67.02 Aligned_cols=49 Identities=24% Similarity=0.195 Sum_probs=36.7
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
++++.+..+.|+...+.+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 260 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 260 RIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred eEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3445555555554445566777788999999999999999999877764
No 412
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.78 E-value=0.00044 Score=64.51 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=37.2
Q ss_pred hhhHHHhhccCCh---HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~---~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+. .+..+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556666666642 2355666777889999999999999999988777643
No 413
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.0061 Score=55.32 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+-+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44455566779999999999999999988777644
No 414
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.0087 Score=62.06 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred HHHHHHHhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 20 KRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 20 ~~~~~~~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+...+..|+ -++++||.|+|||+++..+...
T Consensus 26 ~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 26 RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344444543 4689999999999877665543
No 415
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=96.75 E-value=0.00073 Score=64.56 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=36.5
Q ss_pred hhhHHHhhccCCh-------------HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI-------------ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~-------------~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.++.+.|+. ..+-+.+...+.+|+.+.|+|++|||||+++..++-.
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4556666666542 2344566777789999999999999999888777643
No 416
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.75 E-value=0.00019 Score=65.92 Aligned_cols=52 Identities=29% Similarity=0.328 Sum_probs=42.9
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++++.+..+.++..++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6677788888877655667778888899999999999999999988777644
No 417
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.75 E-value=0.003 Score=62.78 Aligned_cols=65 Identities=31% Similarity=0.386 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHhCC-CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHH
Q 014085 14 PIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
.+.+-|++++...... .-.+|.||+|+|||+.+-.++..... ++++++++.|+..+++.+.+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk--~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK--QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH--cCCeEEEEcCchHHHHHHHHHhc
Confidence 3567889998888877 56789999999999665555544322 36789999999999999888644
No 418
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.75 E-value=0.0096 Score=58.78 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
..+++.||+|+|||+++..+.........+..++++..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 36889999999999887655544322222445666643
No 419
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.74 E-value=0.0019 Score=68.53 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+.+...+.+|+.+.|+||+||||||++..+....
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566777788899999999999999999987776443
No 420
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.74 E-value=0.0049 Score=55.75 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=31.0
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~ 145 (431)
..+..++.+..++.....+.+++++||- +.+......+..+++++.
T Consensus 125 ~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~ 172 (230)
T TIGR02770 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172 (230)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHH
Confidence 3556666666677777888999999994 444444555666666554
No 421
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.74 E-value=0.0015 Score=62.44 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=37.7
Q ss_pred hhhHHHhhccCCh----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+. ..+.+.+...+.+|+.+.|+|++||||||++..++-.
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 4556666666632 2456667778889999999999999999888777644
No 422
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.74 E-value=0.0015 Score=67.53 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=35.3
Q ss_pred HHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 7 LQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 7 ~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+....++. .++.+.+...+.+|+.+.|+||+||||||++..+....
T Consensus 342 ~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 342 NNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334444543 24667777888899999999999999999887777543
No 423
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.73 E-value=0.0041 Score=59.82 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..++++|||||||||++..++...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999998887665543
No 424
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0027 Score=62.47 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=38.4
Q ss_pred hhHHHhhccCChH--HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 4 QKILQQRKSLPIA--SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 4 ~~~~~~~~~~~~~--~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+++.+.++.|+-. +..+.+...+.+|+.+.|.|+|||||||++..+..
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 3555666666654 47788888999999999999999999998877764
No 425
>PRK12377 putative replication protein; Provisional
Probab=96.72 E-value=0.036 Score=50.44 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
..++++.||+|+|||+++..+...... ++..++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEE
Confidence 368999999999999777666544332 244455543
No 426
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.72 E-value=0.0024 Score=67.56 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=48.0
Q ss_pred hccCCh-HHHHHHH----HHHHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 10 RKSLPI-ASVEKRL----VEEVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 10 ~~~~~~-~~~Q~~~----~~~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.++|+. +|.|.+. ...+.+|++.++.+|||+||| .+++.+.+... .....+++++..+.....|..+.+.+
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~-~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQE-KPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHh-ccccccEEEEcccchHHHHHHHHHHh
Confidence 455665 8888765 455558999999999999999 33333332221 11235788888888777777777665
No 427
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.72 E-value=0.0024 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++++|||||||||++..++...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999998886655544
No 428
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.71 E-value=0.044 Score=50.76 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (431)
.+.++++||+|+||||.+..+..... ..+.++.++. +.+..+.++...+.+..+.. +..... .......
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~------~~~~~~-~~dp~~~ 142 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVD------VIKQKE-GADPAAV 142 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeE------EEeCCC-CCCHHHH
Confidence 35678899999999977766654432 2344555543 33444444444444443321 111111 1111121
Q ss_pred HHHHhcccCCCCCcEEEEecCCcCcc
Q 014085 107 IKEALLDPYLSRYSAIIVDEAHERTV 132 (431)
Q Consensus 107 ~~~~~~~~~~~~~~~lViDEah~~~~ 132 (431)
....+......+++++++|=+.....
T Consensus 143 ~~~~l~~~~~~~~D~ViIDT~G~~~~ 168 (272)
T TIGR00064 143 AFDAIQKAKARNIDVVLIDTAGRLQN 168 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence 11222222346699999998864443
No 429
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.71 E-value=0.00069 Score=70.71 Aligned_cols=122 Identities=22% Similarity=0.220 Sum_probs=70.2
Q ss_pred HHHhhccCChH--HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----------------CcEEEEeC
Q 014085 6 ILQQRKSLPIA--SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----------------GKLIGVTQ 66 (431)
Q Consensus 6 ~~~~~~~~~~~--~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----------------~~~v~v~~ 66 (431)
+.+....|... +..+.+...+..|+.+.|+|++||||||++..+.-......+ .+.+.+++
T Consensus 474 ~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred EEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEc
Confidence 33444445444 577788888899999999999999999998877643322110 12333333
Q ss_pred chhHHHHH-HhH---------------HHHHHhCCc---cCCeEeEeE---eecCCCChhHhHHHHhcccCCCCCcEEEE
Q 014085 67 PRRVAAVT-VAK---------------RVAEESGVE---LGQRVGYSI---RFDDRTSTSTRIKEALLDPYLSRYSAIIV 124 (431)
Q Consensus 67 p~~~l~~~-~~~---------------~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lVi 124 (431)
-...+-.. +.+ ..+...+.. ...-.||.. ......+..++++..+++..+.+..++++
T Consensus 554 Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 554 QDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred ccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 21111100 000 011111110 011122221 22345688888888899999999999999
Q ss_pred ecC
Q 014085 125 DEA 127 (431)
Q Consensus 125 DEa 127 (431)
||+
T Consensus 634 DEa 636 (709)
T COG2274 634 DEA 636 (709)
T ss_pred eCc
Confidence 997
No 430
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.71 E-value=0.0058 Score=51.24 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
.+.+.+...+..|+.+.|+||+|||||+++..+.
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHh
Confidence 4455666778899999999999999998886665
No 431
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.70 E-value=0.00064 Score=70.26 Aligned_cols=50 Identities=26% Similarity=0.299 Sum_probs=38.6
Q ss_pred hHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 5 KILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 5 ~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
++.+....++ ..++-+++...+.+|+.+.++|||||||||++..+.....
T Consensus 330 ~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 330 EFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred EEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445555666 3567777888899999999999999999988877765443
No 432
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.70 E-value=0.008 Score=58.03 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=34.5
Q ss_pred CCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHHH
Q 014085 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~~ 146 (431)
...+..++.+..+......+.+++++||- +.+......+..+++++..
T Consensus 127 ~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~ 176 (352)
T PRK11144 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176 (352)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 34566777777777778889999999994 4445556667777776654
No 433
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0012 Score=60.03 Aligned_cols=128 Identities=22% Similarity=0.190 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC---------------CcEEEEeCchhHHHH--HHhHHHH
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD---------------GKLIGVTQPRRVAAV--TVAKRVA 80 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~---------------~~~v~v~~p~~~l~~--~~~~~~~ 80 (431)
..+.+...+.+|+.+.|.||+|||||+++..+.-......+ ...+.++++...+.. ...+.+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 34455566779999999999999999888777543221110 012333332211110 0011110
Q ss_pred ---HHhC--------------CccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecCC--cCccchHHHHHHH
Q 014085 81 ---EESG--------------VELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHTDVLLGLL 141 (431)
Q Consensus 81 ---~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah--~~~~~~~~~~~~~ 141 (431)
...+ ..++. ...........+...+.+..++.....+.+++++||-. .+......+..++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGI-DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCC-hhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 0000 00010 01111122345666666777777778889999999953 3455556777777
Q ss_pred HHHHH
Q 014085 142 KKVQN 146 (431)
Q Consensus 142 ~~~~~ 146 (431)
+.+..
T Consensus 173 ~~~~~ 177 (235)
T cd03299 173 KKIRK 177 (235)
T ss_pred HHHHH
Confidence 76643
No 434
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.69 E-value=0.017 Score=57.50 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=50.3
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
..+++.|++|+|||+++..+.........+..++++.... ........+.. . . ..+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~-f~~~~~~~l~~----~--------------~---~~~~~ 199 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE-FARKAVDILQK----T--------------H---KEIEQ 199 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH-HHHHHHHHHHH----h--------------h---hHHHH
Confidence 3588999999999988765544322222345666665433 33232222211 0 0 11111
Q ss_pred HhcccCCCCCcEEEEecCCcCcc---chHHHHHHHHHHHH
Q 014085 110 ALLDPYLSRYSAIIVDEAHERTV---HTDVLLGLLKKVQN 146 (431)
Q Consensus 110 ~~~~~~~~~~~~lViDEah~~~~---~~~~~~~~~~~~~~ 146 (431)
+.. ...+.+++|+||+|.... ..+.+..++.....
T Consensus 200 ~~~--~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~ 237 (450)
T PRK14087 200 FKN--EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE 237 (450)
T ss_pred HHH--HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHH
Confidence 111 234589999999996542 23556666555543
No 435
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.69 E-value=0.00094 Score=68.39 Aligned_cols=140 Identities=18% Similarity=0.123 Sum_probs=77.2
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc------CCcEEEEeCchh-------H
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR------DGKLIGVTQPRR-------V 70 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~------~~~~v~v~~p~~-------~ 70 (431)
+++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-...... ....+.+++... .
T Consensus 320 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 344445555544445566777788999999999999999999877764322111 112333433211 0
Q ss_pred HHHHHhHH----------HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHH
Q 014085 71 AAVTVAKR----------VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLL 138 (431)
Q Consensus 71 l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~ 138 (431)
.+.+.... +..... .++.............+..++.+..++...+.+.+++++|| .+.+......+.
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 478 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLG-RLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLN 478 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHH-HcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 11111100 000000 00100001112234456677777777777888999999999 566666666676
Q ss_pred HHHHHH
Q 014085 139 GLLKKV 144 (431)
Q Consensus 139 ~~~~~~ 144 (431)
.+++.+
T Consensus 479 ~~l~~~ 484 (530)
T PRK15064 479 MALEKY 484 (530)
T ss_pred HHHHHC
Confidence 666543
No 436
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.67 E-value=0.0015 Score=67.93 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=34.1
Q ss_pred HhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 8 QQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 8 ~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+....++. .++.+.+...+.+|+.++|+|++||||||++..++...
T Consensus 339 ~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 339 DVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 33444443 34566677778899999999999999999987776443
No 437
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.67 E-value=0.0017 Score=67.48 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=34.8
Q ss_pred HhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 8 QQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 8 ~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+....++. .++.+.+...+.+|+.+.|+||+||||||++..+....
T Consensus 346 ~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred EEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33444443 34667777788899999999999999999988777543
No 438
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.65 E-value=0.0018 Score=53.46 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=35.5
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
.+.+..++|......-++-....+|+.+++.||+|+|||+++..+-.
T Consensus 4 rv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl 50 (242)
T COG4161 4 QLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred EEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH
Confidence 33445566666666667777788999999999999999988765543
No 439
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.64 E-value=0.0061 Score=51.67 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=33.0
Q ss_pred ecCCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHHHHhh
Q 014085 97 FDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~~~~~ 148 (431)
.....+..++.+..+++.+...--++.+||- -..+.-....+.++..++..+
T Consensus 126 LP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~ 179 (231)
T COG3840 126 LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDER 179 (231)
T ss_pred CccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhh
Confidence 3344455555666666666666778999993 234444566777777777765
No 440
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.64 E-value=0.002 Score=57.20 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
..+.+...+.+|+.+.++|++||||||++..+.-...
T Consensus 42 aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred EecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 3445556667889999999999999998877654433
No 441
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=96.63 E-value=0.0021 Score=66.17 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=40.3
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+ ..++-+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456667777776 45566778888899999999999999999998877644
No 442
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.63 E-value=0.0028 Score=59.91 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=33.5
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHH
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l 71 (431)
+...+..+.+++|+|+|||||||++..++..........+++.+.-..++
T Consensus 137 L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 137 IRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 34455577899999999999998887766544222224466666644444
No 443
>PRK06921 hypothetical protein; Provisional
Probab=96.63 E-value=0.033 Score=51.46 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
.+.++++.||+|+|||+++..++.... ...+..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH
Confidence 467899999999999988766655432 221445666553
No 444
>PRK08116 hypothetical protein; Validated
Probab=96.63 E-value=0.048 Score=50.43 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
..+++.|++|+|||+++..+...... . +..++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~-~-~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE-K-GVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-c-CCeEEEEE
Confidence 35999999999999777655544322 2 34455554
No 445
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.62 E-value=0.00024 Score=65.22 Aligned_cols=52 Identities=27% Similarity=0.248 Sum_probs=42.3
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 1 EPIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5667777777777655666778888899999999999999999998776643
No 446
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=96.62 E-value=0.00082 Score=69.17 Aligned_cols=141 Identities=16% Similarity=0.076 Sum_probs=77.5
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----C-CcEEEEeCchh-HHHH--H
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----D-GKLIGVTQPRR-VAAV--T 74 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~-~~~v~v~~p~~-~l~~--~ 74 (431)
+++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-...... + ...+.+++... .+.. .
T Consensus 325 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKT 404 (556)
T ss_pred EEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCC
Confidence 334444444544445666777788999999999999999999887764432111 1 11233333221 1100 0
Q ss_pred HhHHHHHHh---CC--------ccCCeEeEe----EeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHH
Q 014085 75 VAKRVAEES---GV--------ELGQRVGYS----IRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVL 137 (431)
Q Consensus 75 ~~~~~~~~~---~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~ 137 (431)
..+.+.... +. ..-...+.. .......+..++.+..++...+.+.+++++|| .|.+......+
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484 (556)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 111111000 00 000001110 11223456667777777777788999999999 56666667777
Q ss_pred HHHHHHH
Q 014085 138 LGLLKKV 144 (431)
Q Consensus 138 ~~~~~~~ 144 (431)
.++++.+
T Consensus 485 ~~~l~~~ 491 (556)
T PRK11819 485 EEALLEF 491 (556)
T ss_pred HHHHHhC
Confidence 7777653
No 447
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.62 E-value=0.009 Score=53.75 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.++++.||+|+|||+++..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999998886666543
No 448
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.61 E-value=0.0018 Score=68.93 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 7 LQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 7 ~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+....|+. .++.+.+...+.+|+.+.|+||+||||||++..++...
T Consensus 481 ~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344444543 35667777788899999999999999999987776443
No 449
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.61 E-value=0.0017 Score=64.90 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCc------EEEE-----eCchhHHHHHHhH---------
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK------LIGV-----TQPRRVAAVTVAK--------- 77 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~------~v~v-----~~p~~~l~~~~~~--------- 77 (431)
+...+...+.+|+.+.|.||+||||||++..+.-..... .|. ...+ ..+. ..+.+...
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~-lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQ-LTGIENIELKGLMMGLT 116 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCC-CcHHHHHHhhhhhcCCC
Confidence 345566677799999999999999999987776543221 121 1110 0110 01111100
Q ss_pred ---------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHH
Q 014085 78 ---------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 78 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~ 144 (431)
.+.+..+.. ..........+...+.+..++..++.+.+++++|| .+.+......+..+++++
T Consensus 117 ~~e~~e~i~elLe~lgL~-----~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el 189 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIG-----KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF 189 (549)
T ss_pred HHHHHHHHHHHHHHcCCh-----hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 011111110 01111223456667777777777888899999999 455555566677776665
No 450
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.00061 Score=59.74 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=45.7
Q ss_pred CchhhHHHhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc
Q 014085 1 MPRQKILQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF 55 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~ 55 (431)
|.++++.++...... .++.+.+...+.+|+..+|.||+||||||++..++-+-.+
T Consensus 1 m~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y 56 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56 (251)
T ss_pred CceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 567777888888877 4888888889999999999999999999998777755443
No 451
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.60 E-value=0.015 Score=58.93 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=92.9
Q ss_pred HHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC-cEEEEecCc
Q 014085 244 TIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF-RKVILATNI 322 (431)
Q Consensus 244 ~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~-~~vLvaT~~ 322 (431)
.++..++ ..+.++|+|..-.+..+-+-++|... +|.-.-+.|.....+|+.+++.|.... .-.|++|-+
T Consensus 1035 eLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1035 ELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred HHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 3333333 34778999999999888888888877 999999999999999999999998654 456899999
Q ss_pred cccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChhhh
Q 014085 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENEF 389 (431)
Q Consensus 323 ~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~~ 389 (431)
.+-|+|+-+.+.||= ||+..+-. . =.|...||.|-| .=.+|++++....
T Consensus 1105 GGLGINLTAADTViF--------YdSDWNPT------~----D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIF--------YDSDWNPT------A----DQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred CcccccccccceEEE--------ecCCCCcc------h----hhHHHHHHHhccCccceeeeeecccccH
Confidence 999999999999995 88765521 1 367777777777 4468899876543
No 452
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.60 E-value=0.0013 Score=68.15 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=33.8
Q ss_pred HHhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 7 LQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 7 ~~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+....++. .++.+.+...+.+|+.+.++||+||||||++..+...
T Consensus 338 ~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 338 RHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred EEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 344444543 2455667777789999999999999999998777644
No 453
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.0065 Score=62.63 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCE---EEEEcCCCCChhccHhHHhhh
Q 014085 19 EKRLVEEVRKNDI---LIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 19 Q~~~~~~~~~g~~---~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+...+..|+. +++.||.|+|||+++..+...
T Consensus 25 v~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 25 LTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3344455556654 689999999999877666543
No 454
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.59 E-value=0.0073 Score=58.50 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcE-
Q 014085 238 LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK- 315 (431)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~- 315 (431)
++.+...++.........+.|||..-....+-+.-.|.+. |+.++.+-|+|++..|.+.++.|++. ..+
T Consensus 622 IEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka---------GfscVkL~GsMs~~ardatik~F~nd~~c~v 692 (791)
T KOG1002|consen 622 IEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA---------GFSCVKLVGSMSPAARDATIKYFKNDIDCRV 692 (791)
T ss_pred HHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc---------CceEEEeccCCChHHHHHHHHHhccCCCeEE
Confidence 4455556666666666778999988777777777777776 99999999999999999999999976 444
Q ss_pred EEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 316 VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 316 vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
.|++-.+.+-.+|+-..+.|.. -| ++...+.-+|..-|..|.| +=++++|+-++
T Consensus 693 fLvSLkAGGVALNLteASqVFm--------mD----------PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 693 FLVSLKAGGVALNLTEASQVFM--------MD----------PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred EEEEeccCceEeeechhceeEe--------ec----------ccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 4667777777888888899985 44 5777777788888888877 66788887554
No 455
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.59 E-value=0.0052 Score=57.07 Aligned_cols=85 Identities=28% Similarity=0.294 Sum_probs=46.1
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
.+..+.+++++|||||||||++..++...... ..+++++.-..+... .+ .....+... ....+..
T Consensus 123 ~v~~~~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iEd~~E~~l---------~~---~~~~~~~~~-~~~~~~~ 187 (270)
T PF00437_consen 123 AVRGRGNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIEDPPELRL---------PG---PNQIQIQTR-RDEISYE 187 (270)
T ss_dssp CHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEESSS-S-----------SC---SSEEEEEEE-TTTBSHH
T ss_pred ccccceEEEEECCCccccchHHHHHhhhcccc--ccceEEeccccceee---------cc---cceEEEEee-cCcccHH
Confidence 34567899999999999998887776544322 345555543333221 11 112222222 2333444
Q ss_pred HhHHHHhcccCCCCCcEEEEecCC
Q 014085 105 TRIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 105 ~~~~~~~~~~~~~~~~~lViDEah 128 (431)
..+...+ -.+.+.++++|+-
T Consensus 188 ~~l~~~L----R~~pD~iiigEiR 207 (270)
T PF00437_consen 188 DLLKSAL----RQDPDVIIIGEIR 207 (270)
T ss_dssp HHHHHHT----TS--SEEEESCE-
T ss_pred HHHHHHh----cCCCCcccccccC
Confidence 4444443 3568999999984
No 456
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.58 E-value=0.0014 Score=72.14 Aligned_cols=38 Identities=24% Similarity=0.320 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
++.+.+...+..|+.+.|+|-||||||+++..+.....
T Consensus 1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e 1191 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE 1191 (1381)
T ss_pred chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC
Confidence 56777788888999999999999999987766654433
No 457
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.57 E-value=0.001 Score=56.21 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=36.8
Q ss_pred CchhhHHHhhccCChH-----HHHHH----HHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 1 MPRQKILQQRKSLPIA-----SVEKR----LVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~-----~~Q~~----~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
|+++++.++.|.|.-+ .-|.+ +.+.+.+|+-+.+.|.+|||||+++..+.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHh
Confidence 5678888988888543 22222 33445588999999999999999887765
No 458
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.57 E-value=0.0045 Score=65.14 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=50.1
Q ss_pred HhhccCChHHHHHHHHHHHh----CCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHH
Q 014085 8 QQRKSLPIASVEKRLVEEVR----KNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~----~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
.....+.+++.|.+++..+. .|+.+++.||||+||| +++|.+...... ++.+++.+++..+..|..++.
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~---~~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE---GKKVIISTRTKALQEQLLEED 83 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc---CCcEEEECCCHHHHHHHHHhh
Confidence 34556788899987765544 5667999999999999 555555444322 367899999998888876653
No 459
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.56 E-value=0.01 Score=53.19 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=50.1
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
..+.|.||+|+|||.++..+.........+.++++++... ........+.. ........
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~-f~~~~~~~~~~--------------------~~~~~~~~ 93 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE-FIREFADALRD--------------------GEIEEFKD 93 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH-HHHHHHHHHHT--------------------TSHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH-HHHHHHHHHHc--------------------ccchhhhh
Confidence 3689999999999987766654433322355676665322 22222221110 11122222
Q ss_pred HhcccCCCCCcEEEEecCCcCccc---hHHHHHHHHHHHH
Q 014085 110 ALLDPYLSRYSAIIVDEAHERTVH---TDVLLGLLKKVQN 146 (431)
Q Consensus 110 ~~~~~~~~~~~~lViDEah~~~~~---~~~~~~~~~~~~~ 146 (431)
. +...+++++|.+|..... .+.+..++.....
T Consensus 94 ~-----~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~ 128 (219)
T PF00308_consen 94 R-----LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE 128 (219)
T ss_dssp H-----HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH
T ss_pred h-----hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHh
Confidence 2 335999999999975433 3556666655544
No 460
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.55 E-value=0.0056 Score=63.60 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+.+...+.+|+.+.|+||+||||||++..++...
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455566667799999999999999999988777654
No 461
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.53 E-value=0.012 Score=53.88 Aligned_cols=82 Identities=21% Similarity=0.097 Sum_probs=49.9
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
.....+.+++.|--....+..|+ ++...||=|||..+.+....... .|+.+-++....-|+..-.+.+..++. .+
T Consensus 71 ~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL--~G~~V~vvT~NdyLA~RD~~~~~~~y~-~L 145 (266)
T PF07517_consen 71 RRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL--QGKGVHVVTSNDYLAKRDAEEMRPFYE-FL 145 (266)
T ss_dssp HHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT--TSS-EEEEESSHHHHHHHHHHHHHHHH-HT
T ss_pred HHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH--hcCCcEEEeccHHHhhccHHHHHHHHH-Hh
Confidence 34556677888888888888887 78999999999555444443333 356677777777788666665554443 34
Q ss_pred CCeEeEe
Q 014085 88 GQRVGYS 94 (431)
Q Consensus 88 ~~~~~~~ 94 (431)
|..+|..
T Consensus 146 Glsv~~~ 152 (266)
T PF07517_consen 146 GLSVGII 152 (266)
T ss_dssp T--EEEE
T ss_pred hhccccC
Confidence 4555543
No 462
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.014 Score=58.75 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=20.9
Q ss_pred HhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 26 VRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 26 ~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..|+ .++++||.|+|||+++..+...
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44554 6899999999999887666544
No 463
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.53 E-value=0.0023 Score=65.60 Aligned_cols=48 Identities=23% Similarity=0.258 Sum_probs=35.8
Q ss_pred HHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 6 ILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 6 ~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+....++. .++.+.+...+.+|+.+.++||+||||||++..+....
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344455543 24667777888899999999999999999988776543
No 464
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.53 E-value=0.00042 Score=73.57 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=33.8
Q ss_pred HhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 8 QQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 8 ~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+....++. .++.+.+...+.+|+.+.|+||+||||||++..++...
T Consensus 478 ~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33444432 34566677777899999999999999999987776543
No 465
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.52 E-value=0.03 Score=52.79 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT 65 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~ 65 (431)
.++.+++.||+|+|||+++..+..... ..+..+.++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~ 190 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLL 190 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEE
Confidence 356899999999999988766665543 223444444
No 466
>PF05729 NACHT: NACHT domain
Probab=96.52 E-value=0.018 Score=48.75 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
+.++|.|+.|+|||+++..++....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 3578999999999988877665433
No 467
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.52 E-value=0.0048 Score=63.44 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=34.6
Q ss_pred HhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 8 QQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 8 ~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+....++. .++.+.+...+.+|+.+.++||+||||||++..+....
T Consensus 321 ~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 321 NVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred EEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444432 34566777888899999999999999999987776543
No 468
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.51 E-value=0.0016 Score=64.84 Aligned_cols=130 Identities=20% Similarity=0.190 Sum_probs=73.8
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------------CCcEEEEeCchhHH-----
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------------DGKLIGVTQPRRVA----- 71 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------------~~~~v~v~~p~~~l----- 71 (431)
.-+.+...+.+|+.+.++|++||||||++..++-...... ...+.++--|...+
T Consensus 306 Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~t 385 (539)
T COG1123 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMT 385 (539)
T ss_pred eeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcccc
Confidence 3456777888999999999999999998877764332210 01123332222221
Q ss_pred -HHHHhHHHHHHhCC--------------ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEecCC--cCccch
Q 014085 72 -AVTVAKRVAEESGV--------------ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH--ERTVHT 134 (431)
Q Consensus 72 -~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah--~~~~~~ 134 (431)
-....+.+.-.... .++..-.+..+.....+..++++.+++..+..+.+++|+||.= .+..-.
T Consensus 386 V~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvq 465 (539)
T COG1123 386 VGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQ 465 (539)
T ss_pred HHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHH
Confidence 11111111100000 0111111233444556677777777777788899999999952 233334
Q ss_pred HHHHHHHHHHHHh
Q 014085 135 DVLLGLLKKVQNA 147 (431)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (431)
...+++++.+...
T Consensus 466 a~VlnLl~~lq~e 478 (539)
T COG1123 466 AQVLNLLKDLQEE 478 (539)
T ss_pred HHHHHHHHHHHHH
Confidence 5577777777654
No 469
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.021 Score=56.81 Aligned_cols=38 Identities=21% Similarity=0.087 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
..+++.||+|+|||+++..+.........+..++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 46899999999999887655544322222445666654
No 470
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.50 E-value=0.0022 Score=44.33 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
.|+..+|.||||||||+++..+.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999998886554
No 471
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.49 E-value=0.0033 Score=65.14 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+.+...+.+|+.+.|+|++||||||++..+...
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl 381 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF 381 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 455667777889999999999999999988777644
No 472
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=96.49 E-value=0.0091 Score=57.74 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=33.7
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
..+..++.+..++.....+.+++++|| .+.+......+..+++++..
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~ 179 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH
Confidence 456666677777777788999999999 44455556677777776643
No 473
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.49 E-value=0.0022 Score=67.31 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=72.9
Q ss_pred hHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC------CcEEEEeCchhH-----HH
Q 014085 5 KILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD------GKLIGVTQPRRV-----AA 72 (431)
Q Consensus 5 ~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~------~~~v~v~~p~~~-----l~ 72 (431)
++.+..+.++ ..++.+.+...+.+|+.+.|+||+||||||++..+.-......+ ...+.+++.... ..
T Consensus 453 ~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 453 KFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLR 532 (659)
T ss_pred EEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHH
Confidence 3444444453 22456667777889999999999999999988777654322111 122344432210 00
Q ss_pred HHHh---------------H---HHHHHhCCcc--CCeEeEe--EeecCCCChhHhHHHHhcccCCCCCcEEEEecC--C
Q 014085 73 VTVA---------------K---RVAEESGVEL--GQRVGYS--IRFDDRTSTSTRIKEALLDPYLSRYSAIIVDEA--H 128 (431)
Q Consensus 73 ~~~~---------------~---~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h 128 (431)
++.. + .+.+..+... ....|+. .......+..++.+..++...+.+.+++++||. +
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~ 612 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSA 612 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 1100 0 1111111100 0000110 011245677888888888888899999999995 3
Q ss_pred cCccchHHHHHHHH
Q 014085 129 ERTVHTDVLLGLLK 142 (431)
Q Consensus 129 ~~~~~~~~~~~~~~ 142 (431)
.+......+.+.++
T Consensus 613 LD~~~~~~l~~~l~ 626 (659)
T TIGR00954 613 VSVDVEGYMYRLCR 626 (659)
T ss_pred CCHHHHHHHHHHHH
Confidence 33333344444433
No 474
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.48 E-value=0.0038 Score=64.91 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+.+...+.+|+.+.|+|++||||||++..+....
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4566667778899999999999999999987776544
No 475
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.47 E-value=0.0022 Score=66.52 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+.+...+.+|+.+.|.||+||||||++..++...
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3555666777799999999999999999988777543
No 476
>PRK10867 signal recognition particle protein; Provisional
Probab=96.47 E-value=0.05 Score=53.67 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=47.6
Q ss_pred EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHH
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIK 108 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (431)
.++++||+|+||||.+..++...... .+..+.++ -+.+..+.++.+.+++..+..+ . . . ...........
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v---~--~-~-~~~~dp~~i~~ 173 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV---F--P-S-GDGQDPVDIAK 173 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcCCeE---E--e-c-CCCCCHHHHHH
Confidence 57889999999998776665543222 13334333 3555555444444444433221 0 0 0 01112222222
Q ss_pred HHhcccCCCCCcEEEEecCCcCc
Q 014085 109 EALLDPYLSRYSAIIVDEAHERT 131 (431)
Q Consensus 109 ~~~~~~~~~~~~~lViDEah~~~ 131 (431)
..+......+++++|+|=+-...
T Consensus 174 ~a~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 174 AALEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcc
Confidence 23322234569999999885433
No 477
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.46 E-value=0.00039 Score=63.75 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=42.5
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++++.+..+.++-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 1 MNKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred CCeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5667777888877655667778888889999999999999999988777543
No 478
>PLN03232 ABC transporter C family member; Provisional
Probab=96.46 E-value=0.00081 Score=76.82 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=37.0
Q ss_pred hHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 5 KILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 5 ~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+....|+. .++.+.+...+.+|+.+.|+|+|||||||++..+....
T Consensus 1236 ~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1236 KFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred EEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444555533 35777888888899999999999999999887777543
No 479
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.45 E-value=0.019 Score=58.52 Aligned_cols=37 Identities=30% Similarity=0.265 Sum_probs=25.6
Q ss_pred EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
.++|.|++|+|||.++..+.........+..++++..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4899999999999887666654433223556666654
No 480
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=96.44 E-value=0.0012 Score=69.16 Aligned_cols=140 Identities=20% Similarity=0.200 Sum_probs=75.4
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----C-CcEEEEeCchhH-HH--HH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----D-GKLIGVTQPRRV-AA--VT 74 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~-~~~v~v~~p~~~-l~--~~ 74 (431)
+++.+..+.++..++.+.+...+..|+.+.|+||+||||||++..+.-...... + ...+.+++.... +. ..
T Consensus 320 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 320 FEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKT 399 (635)
T ss_pred EEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCC
Confidence 444455555554455666777788999999999999999999877764432111 1 112333332110 00 00
Q ss_pred HhHHHHHHh-CCccC----------CeEeE----eEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHH
Q 014085 75 VAKRVAEES-GVELG----------QRVGY----SIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVL 137 (431)
Q Consensus 75 ~~~~~~~~~-~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~ 137 (431)
+.+.+.... ..... ...++ ........+...+.+..++...+.+.+++++|| .|.+....+.+
T Consensus 400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 111111000 00000 00011 011123456666666777777788999999999 56666666666
Q ss_pred HHHHHH
Q 014085 138 LGLLKK 143 (431)
Q Consensus 138 ~~~~~~ 143 (431)
..+++.
T Consensus 480 ~~~l~~ 485 (635)
T PRK11147 480 EELLDS 485 (635)
T ss_pred HHHHHh
Confidence 666654
No 481
>PRK13409 putative ATPase RIL; Provisional
Probab=96.44 E-value=0.014 Score=60.31 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=69.4
Q ss_pred HHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCc-----EEEEeCchhH-----HHHHHhHHHHHHhC--------
Q 014085 23 VEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK-----LIGVTQPRRV-----AAVTVAKRVAEESG-------- 84 (431)
Q Consensus 23 ~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~-----~v~v~~p~~~-----l~~~~~~~~~~~~~-------- 84 (431)
...+.+|+.+.|.||+||||||++..+.-..... .|. .+.+++.... .+.+..........
T Consensus 359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~-~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~ 437 (590)
T PRK13409 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD-EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEI 437 (590)
T ss_pred ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHH
Confidence 3445789999999999999999987776443211 121 1222221111 11111110000000
Q ss_pred -CccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 85 -VELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
..++.. ..........+..++.+..++.....+.+++++|| +|.+......+..+++++..
T Consensus 438 L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~ 501 (590)
T PRK13409 438 IKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE 501 (590)
T ss_pred HHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 000110 11112233456777777777777888999999999 67777777888888888754
No 482
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.43 E-value=0.0048 Score=58.42 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=34.4
Q ss_pred HHHHH-HHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHH
Q 014085 19 EKRLV-EEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVA 71 (431)
Q Consensus 19 Q~~~~-~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l 71 (431)
|.+.+ ..+..+++++++|+||||||+++..++..........+++++....++
T Consensus 137 ~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 137 QREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 43443 456688899999999999998887766543212223456666554443
No 483
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.42 E-value=0.0054 Score=62.22 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=33.8
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
..+..++.+..++.....+.+++++|| ++.+......+..+++++.
T Consensus 134 ~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 181 (491)
T PRK10982 134 TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181 (491)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 355666666666667788899999999 5666666777878877763
No 484
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.42 E-value=0.018 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 21 ~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455668899999999999999998777654
No 485
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.42 E-value=0.053 Score=51.98 Aligned_cols=38 Identities=29% Similarity=0.410 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCC--EEEEEcCCCCChhccHhHHhhhc
Q 014085 16 ASVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~--~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+.+.+...+..++ .+++.||+|+|||+++..+....
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344555555566666 89999999999998886665543
No 486
>PRK09087 hypothetical protein; Validated
Probab=96.42 E-value=0.015 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+..+++.||+|||||+++..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999988865543
No 487
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=96.41 E-value=0.00083 Score=71.22 Aligned_cols=49 Identities=24% Similarity=0.283 Sum_probs=36.6
Q ss_pred hHHHhhccCCh---HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 5 KILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 5 ~~~~~~~~~~~---~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+....++. .++.+.+...+.+|+.+.|+||+||||||++..+....
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33444455543 34667788888899999999999999999987776543
No 488
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.018 Score=58.39 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHHhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 21 RLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 21 ~~~~~~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+...+..|+ .+++.||.|+|||+++..++..
T Consensus 27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555554 3789999999999887666643
No 489
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=96.40 E-value=0.0061 Score=60.45 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=26.3
Q ss_pred eecCCCChhHhHHHHhcccCCCCCcEEEEecCC
Q 014085 96 RFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah 128 (431)
.+....+..++++..+++-+..++++.|+|||-
T Consensus 566 dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~T 598 (659)
T KOG0060|consen 566 DWMDVLSPGEQQRLAFARLFYHKPKFAILDECT 598 (659)
T ss_pred cHHhhcCHHHHHHHHHHHHHhcCCceEEeechh
Confidence 344556777888888888788899999999984
No 490
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.40 E-value=0.0025 Score=67.41 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=35.6
Q ss_pred HHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 6 ILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 6 ~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+....|+. .++.+.+...+.+|+.+.|+||+||||||++..++...
T Consensus 454 ~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 454 VDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344445532 34666777788899999999999999999988777543
No 491
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.39 E-value=0.0046 Score=63.19 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=0.0
Q ss_pred chhhHHHhhccCCh-----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEE--------------
Q 014085 2 PRQKILQQRKSLPI-----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLI-------------- 62 (431)
Q Consensus 2 ~~~~~~~~~~~~~~-----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v-------------- 62 (431)
+++++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+.-......+.-.+
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Q ss_pred ----------EEeCch----------------------hHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHH
Q 014085 63 ----------GVTQPR----------------------RVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEA 110 (431)
Q Consensus 63 ----------~v~~p~----------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (431)
.+++.. ..........+.+..+.................+..++.+..
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Q ss_pred hcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCC
Q 014085 111 LLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRK 188 (431)
Q Consensus 111 ~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 188 (431)
++...+.+.+++++|| .+.+......+..+++++...
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~----------------------------------------- 476 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE----------------------------------------- 476 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-----------------------------------------
Q ss_pred CCCceEEEEc
Q 014085 189 FAPLKLIIMS 198 (431)
Q Consensus 189 ~~~~~~v~lS 198 (431)
.+..+|+.|
T Consensus 477 -~g~tvi~vs 485 (520)
T TIGR03269 477 -MEQTFIIVS 485 (520)
T ss_pred -cCcEEEEEe
No 492
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.017 Score=61.18 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=21.9
Q ss_pred HHHHHhCCC---EEEEEcCCCCChhccHhHHhhhc
Q 014085 22 LVEEVRKND---ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 22 ~~~~~~~g~---~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+...+..|+ -++++||.|+|||+++..+....
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 333444443 35899999999998876666443
No 493
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.39 E-value=0.015 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=20.6
Q ss_pred HHhCCC--EEEEEcCCCCChhccHhHHhhh
Q 014085 25 EVRKND--ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 25 ~~~~g~--~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+..|+ +.++.||+|+|||+++..+...
T Consensus 42 ~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 42 AVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred HHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 334443 7899999999999887665543
No 494
>PRK06620 hypothetical protein; Validated
Probab=96.38 E-value=0.0098 Score=53.05 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=16.8
Q ss_pred CEEEEEcCCCCChhccHhHH
Q 014085 30 DILIIVGETGSGKTTQLPQF 49 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~ 49 (431)
..+++.||+|+|||+++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999888654
No 495
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.38 E-value=0.00033 Score=63.70 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=41.4
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++++.+..+.++..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred ccEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3466777777777655667777888889999999999999999888766544
No 496
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.38 E-value=0.025 Score=52.22 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHh--CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 16 ASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 16 ~~~Q~~~~~~~~--~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
.+.|.+.+..+. .+..++++|||||||||++..++..... ....++.+.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~--~~~~iitiE 115 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT--PEKNIITVE 115 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC--CCCeEEEEC
Confidence 344555554443 3558999999999999888766544321 233455543
No 497
>PLN03130 ABC transporter C family member; Provisional
Probab=96.37 E-value=0.0008 Score=77.12 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=37.0
Q ss_pred hHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 5 KILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 5 ~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+....|+. .++.+.+...+.+|+.+.|+|+|||||||++..+....
T Consensus 1239 ~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred EEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 34444555543 25777888888999999999999999999887776543
No 498
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.029 Score=56.10 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=21.5
Q ss_pred HHHHhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 23 VEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 23 ~~~~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+..++ .+++.||+|+|||+++..+...
T Consensus 27 ~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 27 INALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33344554 3689999999999888766554
No 499
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.36 E-value=0.003 Score=65.33 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+.+...+.+|+.+.++||+||||||++..+...
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~ 364 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 355666677889999999999999999988777644
No 500
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.36 E-value=0.011 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=20.5
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
.+..| .++++||+|||||+++..+.
T Consensus 19 ~~~~g-~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 19 PFPPG-LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 45567 88999999999998876654
Done!