Query 014085
Match_columns 431
No_of_seqs 174 out of 1852
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 3.5E-55 1.2E-59 458.7 36.1 388 3-431 83-488 (773)
2 2db3_A ATP-dependent RNA helic 100.0 1.4E-41 4.9E-46 336.4 22.6 310 5-387 69-407 (434)
3 2va8_A SSO2462, SKI2-type heli 100.0 3E-41 1E-45 354.5 16.7 358 5-417 21-448 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 8.1E-41 2.8E-45 350.3 19.9 352 6-417 17-427 (702)
5 3fht_A ATP-dependent RNA helic 100.0 4.5E-40 1.6E-44 323.7 22.5 320 4-388 37-380 (412)
6 3eiq_A Eukaryotic initiation f 100.0 2.7E-41 9.2E-46 332.7 13.1 314 4-390 52-390 (414)
7 2i4i_A ATP-dependent RNA helic 100.0 2.5E-40 8.5E-45 326.2 19.7 318 4-391 27-387 (417)
8 2j0s_A ATP-dependent RNA helic 100.0 1.5E-40 5.2E-45 327.1 17.6 312 5-389 50-385 (410)
9 2v1x_A ATP-dependent DNA helic 100.0 2.6E-39 9E-44 329.7 26.2 308 11-391 41-378 (591)
10 3pey_A ATP-dependent RNA helic 100.0 3.6E-39 1.2E-43 315.2 25.9 319 3-387 16-356 (395)
11 1xti_A Probable ATP-dependent 100.0 4.3E-39 1.5E-43 314.5 24.0 313 4-388 20-358 (391)
12 1hv8_A Putative ATP-dependent 100.0 3.1E-39 1.1E-43 312.5 22.6 312 4-391 18-349 (367)
13 3i5x_A ATP-dependent RNA helic 100.0 3E-39 1E-43 330.8 23.3 323 5-389 85-451 (563)
14 3fmp_B ATP-dependent RNA helic 100.0 2.8E-40 9.5E-45 331.8 13.2 320 4-388 104-447 (479)
15 3sqw_A ATP-dependent RNA helic 100.0 5.3E-39 1.8E-43 329.5 22.3 323 5-389 34-400 (579)
16 2zj8_A DNA helicase, putative 100.0 6.2E-40 2.1E-44 344.5 15.7 327 4-388 13-388 (720)
17 1s2m_A Putative ATP-dependent 100.0 6.5E-39 2.2E-43 314.4 20.6 311 6-390 35-368 (400)
18 3l9o_A ATP-dependent RNA helic 100.0 4.8E-40 1.7E-44 355.2 12.9 325 8-387 178-597 (1108)
19 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-38 9.7E-43 318.9 21.6 296 12-391 23-347 (523)
20 1fuu_A Yeast initiation factor 100.0 1.4E-39 4.7E-44 318.3 9.6 315 5-392 34-371 (394)
21 2xgj_A ATP-dependent RNA helic 100.0 1.7E-38 5.7E-43 340.5 18.2 323 10-387 82-499 (1010)
22 4f92_B U5 small nuclear ribonu 100.0 1.7E-37 5.7E-42 346.4 24.0 330 12-388 924-1309(1724)
23 2z0m_A 337AA long hypothetical 100.0 1.6E-37 5.6E-42 297.0 17.7 298 3-385 5-321 (337)
24 2z83_A Helicase/nucleoside tri 100.0 8.6E-37 2.9E-41 303.5 22.8 288 19-387 11-313 (459)
25 4f92_B U5 small nuclear ribonu 100.0 2.8E-37 9.5E-42 344.7 21.4 327 14-388 79-474 (1724)
26 4a4z_A Antiviral helicase SKI2 100.0 2E-37 6.7E-42 332.2 18.4 322 10-385 35-490 (997)
27 3fho_A ATP-dependent RNA helic 100.0 9.1E-39 3.1E-43 322.3 7.6 312 11-387 138-470 (508)
28 3oiy_A Reverse gyrase helicase 100.0 1.2E-38 3.9E-43 314.1 8.1 310 4-387 11-365 (414)
29 2jlq_A Serine protease subunit 100.0 2.2E-37 7.6E-42 307.3 13.9 290 14-385 4-309 (451)
30 3o8b_A HCV NS3 protease/helica 100.0 6.7E-37 2.3E-41 310.5 16.5 300 6-390 209-517 (666)
31 2whx_A Serine protease/ntpase/ 100.0 6.4E-37 2.2E-41 313.1 15.5 288 17-385 174-476 (618)
32 1yks_A Genome polyprotein [con 100.0 3.6E-36 1.2E-40 297.4 19.9 279 25-384 4-296 (440)
33 2ykg_A Probable ATP-dependent 100.0 3.4E-37 1.2E-41 323.3 12.8 137 253-413 397-552 (696)
34 4a2p_A RIG-I, retinoic acid in 100.0 4.9E-36 1.7E-40 306.3 18.0 119 252-389 388-510 (556)
35 3rc3_A ATP-dependent RNA helic 100.0 2.1E-36 7.2E-41 310.3 10.5 312 25-416 151-476 (677)
36 2wv9_A Flavivirin protease NS2 100.0 5.7E-36 2E-40 307.9 13.1 294 14-384 215-530 (673)
37 2v6i_A RNA helicase; membrane, 100.0 5.1E-35 1.8E-39 288.5 18.5 275 28-384 1-287 (431)
38 1wp9_A ATP-dependent RNA helic 100.0 8.6E-35 2.9E-39 291.5 19.4 111 252-389 359-477 (494)
39 3tbk_A RIG-I helicase domain; 100.0 4.4E-35 1.5E-39 299.1 16.9 119 252-389 387-509 (555)
40 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-34 4.4E-39 307.1 18.4 119 252-389 629-751 (797)
41 2eyq_A TRCF, transcription-rep 100.0 5.1E-33 1.8E-37 302.2 25.5 296 9-387 598-922 (1151)
42 1gm5_A RECG; helicase, replica 100.0 6.1E-34 2.1E-38 296.3 14.2 295 10-385 364-695 (780)
43 4ddu_A Reverse gyrase; topoiso 100.0 1.8E-34 6.3E-39 311.7 10.5 278 9-342 73-388 (1104)
44 4a2w_A RIG-I, retinoic acid in 100.0 6E-33 2.1E-37 297.5 21.3 118 252-388 629-750 (936)
45 4gl2_A Interferon-induced heli 100.0 1.4E-34 4.8E-39 303.5 8.1 109 254-384 400-516 (699)
46 2fwr_A DNA repair protein RAD2 100.0 2E-32 6.7E-37 274.2 8.2 290 11-387 90-454 (472)
47 2oca_A DAR protein, ATP-depend 100.0 5E-32 1.7E-36 273.8 6.8 294 12-385 111-453 (510)
48 1gku_B Reverse gyrase, TOP-RG; 100.0 9.7E-32 3.3E-36 290.6 6.9 271 9-341 52-352 (1054)
49 1tf5_A Preprotein translocase 100.0 1.1E-29 3.7E-34 260.0 21.5 161 193-388 369-546 (844)
50 3h1t_A Type I site-specific re 100.0 5.8E-30 2E-34 263.1 16.8 299 13-377 177-545 (590)
51 2fsf_A Preprotein translocase 100.0 3.9E-28 1.3E-32 247.9 18.9 107 253-388 440-584 (853)
52 1nkt_A Preprotein translocase 99.9 2E-26 6.7E-31 235.7 24.4 163 192-388 396-618 (922)
53 3eaq_A Heat resistant RNA depe 99.9 2.9E-28 9.9E-33 217.0 5.8 152 245-423 22-188 (212)
54 3dmq_A RNA polymerase-associat 99.9 3.2E-27 1.1E-31 253.6 14.9 118 243-386 492-614 (968)
55 3i32_A Heat resistant RNA depe 99.9 2.6E-27 8.7E-32 220.7 1.6 166 227-423 5-185 (300)
56 1z63_A Helicase of the SNF2/RA 99.9 1.4E-25 4.7E-30 226.1 13.7 109 253-387 340-453 (500)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.5E-24 5.2E-29 231.5 19.3 307 13-385 270-707 (1038)
58 1c4o_A DNA nucleotide excision 99.9 1.8E-23 6.2E-28 215.8 24.1 167 191-387 380-550 (664)
59 3jux_A Protein translocase sub 99.9 5.4E-23 1.8E-27 206.1 22.6 162 193-388 411-588 (822)
60 2hjv_A ATP-dependent RNA helic 99.9 2.9E-24 1E-28 183.1 10.9 134 225-389 10-144 (163)
61 2rb4_A ATP-dependent RNA helic 99.9 4.5E-24 1.5E-28 184.2 12.1 142 224-389 7-149 (175)
62 1z3i_X Similar to RAD54-like; 99.9 3.4E-23 1.2E-27 213.9 20.8 109 252-387 414-528 (644)
63 1t5i_A C_terminal domain of A 99.9 8E-24 2.7E-28 181.9 11.1 132 225-387 6-138 (172)
64 1fuk_A Eukaryotic initiation f 99.9 6.8E-24 2.3E-28 181.3 8.2 116 247-389 23-139 (165)
65 2jgn_A DBX, DDX3, ATP-dependen 99.9 2E-23 6.9E-28 181.5 11.0 135 225-390 20-156 (185)
66 2p6n_A ATP-dependent RNA helic 99.9 1.8E-23 6E-28 182.7 10.4 131 225-387 30-161 (191)
67 3mwy_W Chromo domain-containin 99.9 1.5E-22 5.3E-27 214.1 15.6 108 253-387 571-684 (800)
68 2yjt_D ATP-dependent RNA helic 99.8 4.5E-24 1.5E-28 183.3 0.0 120 245-391 21-141 (170)
69 2d7d_A Uvrabc system protein B 99.9 1.9E-21 6.5E-26 200.6 16.8 167 191-387 386-556 (661)
70 3llm_A ATP-dependent RNA helic 99.9 7E-21 2.4E-25 172.2 15.9 172 4-217 51-234 (235)
71 3iuy_A Probable ATP-dependent 99.7 4.5E-18 1.5E-22 153.0 9.0 123 4-128 32-177 (228)
72 2pl3_A Probable ATP-dependent 99.7 1.6E-17 5.6E-22 150.1 9.0 173 4-219 37-233 (236)
73 3dkp_A Probable ATP-dependent 99.7 2.5E-17 8.6E-22 149.8 9.9 123 6-129 43-186 (245)
74 3fe2_A Probable ATP-dependent 99.7 1.1E-17 3.9E-22 151.8 7.4 173 5-220 42-239 (242)
75 3bor_A Human initiation factor 99.7 2.8E-17 9.7E-22 148.7 9.7 123 5-128 43-183 (237)
76 3fmo_B ATP-dependent RNA helic 99.7 2.6E-17 8.8E-22 154.1 9.3 174 4-219 104-298 (300)
77 1q0u_A Bstdead; DEAD protein, 99.7 1.1E-17 3.9E-22 149.4 6.4 126 3-128 15-160 (219)
78 1t6n_A Probable ATP-dependent 99.7 2.3E-16 8E-21 140.9 14.9 126 5-130 27-170 (220)
79 2gxq_A Heat resistant RNA depe 99.7 6.5E-17 2.2E-21 143.0 11.1 122 4-128 13-154 (207)
80 1qde_A EIF4A, translation init 99.7 7.6E-17 2.6E-21 144.5 11.3 125 4-129 26-166 (224)
81 2oxc_A Probable ATP-dependent 99.7 5.6E-17 1.9E-21 146.0 10.2 125 5-129 37-177 (230)
82 1vec_A ATP-dependent RNA helic 99.7 1.1E-16 3.7E-21 141.5 11.8 126 4-129 15-157 (206)
83 3ly5_A ATP-dependent RNA helic 99.7 2.1E-17 7.3E-22 151.8 7.2 165 5-212 67-256 (262)
84 3ber_A Probable ATP-dependent 99.7 4.7E-17 1.6E-21 148.3 8.9 124 4-128 55-196 (249)
85 1wrb_A DJVLGB; RNA helicase, D 99.7 5.8E-17 2E-21 148.1 9.2 177 5-220 36-241 (253)
86 1z5z_A Helicase of the SNF2/RA 99.6 3.6E-16 1.2E-20 143.7 6.9 109 253-387 111-224 (271)
87 2vl7_A XPD; helicase, unknown 99.6 1E-15 3.5E-20 154.8 8.6 125 240-381 371-516 (540)
88 2ipc_A Preprotein translocase 99.6 3.8E-14 1.3E-18 145.2 19.6 78 10-92 75-152 (997)
89 3b6e_A Interferon-induced heli 99.5 1.1E-14 3.9E-19 129.2 7.6 121 9-131 28-175 (216)
90 2fz4_A DNA repair protein RAD2 99.4 3.2E-13 1.1E-17 121.7 8.7 113 11-130 90-204 (237)
91 1rif_A DAR protein, DNA helica 99.4 1.5E-13 5E-18 127.6 5.7 71 13-84 112-182 (282)
92 3crv_A XPD/RAD3 related DNA he 99.3 5.1E-11 1.7E-15 120.8 20.7 169 192-377 316-520 (551)
93 1w36_D RECD, exodeoxyribonucle 98.2 2.2E-06 7.6E-11 87.5 8.9 66 16-81 151-218 (608)
94 4a15_A XPD helicase, ATP-depen 97.8 2.2E-05 7.6E-10 80.2 6.3 175 192-382 376-580 (620)
95 3upu_A ATP-dependent DNA helic 97.8 0.00047 1.6E-08 67.9 15.5 65 14-79 25-94 (459)
96 3e1s_A Exodeoxyribonuclease V, 97.8 4.8E-05 1.6E-09 76.9 8.3 65 12-78 187-251 (574)
97 2pcj_A ABC transporter, lipopr 97.7 1.4E-05 4.9E-10 70.7 2.5 138 3-145 4-187 (224)
98 3rlf_A Maltose/maltodextrin im 97.6 5.8E-06 2E-10 78.7 -0.8 142 1-147 1-182 (381)
99 4a15_A XPD helicase, ATP-depen 97.6 0.00022 7.4E-09 72.9 10.7 67 13-82 2-74 (620)
100 1vpl_A ABC transporter, ATP-bi 97.6 7.6E-06 2.6E-10 73.9 -0.1 140 1-145 13-193 (256)
101 4g1u_C Hemin import ATP-bindin 97.6 1.5E-05 5.2E-10 72.4 1.7 139 3-147 11-196 (266)
102 2kjq_A DNAA-related protein; s 97.6 6.9E-05 2.4E-09 61.7 5.3 26 28-53 35-60 (149)
103 2it1_A 362AA long hypothetical 97.5 2.6E-05 8.7E-10 73.9 2.1 142 1-147 1-182 (362)
104 2nq2_C Hypothetical ABC transp 97.5 1.1E-05 3.8E-10 72.8 -0.8 139 3-146 4-176 (253)
105 3ec2_A DNA replication protein 97.5 0.00028 9.6E-09 59.8 8.0 38 16-53 16-62 (180)
106 1oxx_K GLCV, glucose, ABC tran 97.5 2.4E-05 8.4E-10 73.9 1.4 142 1-147 1-189 (353)
107 2yyz_A Sugar ABC transporter, 97.5 1.3E-06 4.4E-11 82.7 -7.5 142 1-147 1-182 (359)
108 3fvq_A Fe(3+) IONS import ATP- 97.5 1.5E-06 5E-11 82.1 -7.2 139 3-146 4-186 (359)
109 1g29_1 MALK, maltose transport 97.4 3.6E-05 1.2E-09 73.3 2.0 142 1-147 1-188 (372)
110 3kl4_A SRP54, signal recogniti 97.4 0.0016 5.6E-08 62.9 13.2 94 29-131 97-192 (433)
111 1v43_A Sugar-binding transport 97.4 2.5E-06 8.4E-11 81.2 -6.5 142 1-147 9-190 (372)
112 3gfo_A Cobalt import ATP-bindi 97.4 7E-06 2.4E-10 74.9 -3.3 138 3-145 7-190 (275)
113 1z47_A CYSA, putative ABC-tran 97.4 6.2E-05 2.1E-09 71.0 2.7 139 3-146 14-193 (355)
114 3tif_A Uncharacterized ABC tra 97.2 0.00058 2E-08 60.7 7.2 49 99-147 144-194 (235)
115 3tui_C Methionine import ATP-b 97.2 0.00051 1.7E-08 64.9 6.8 140 3-147 24-212 (366)
116 1sgw_A Putative ABC transporte 97.2 4.7E-05 1.6E-09 66.7 -0.7 136 4-146 11-181 (214)
117 3te6_A Regulatory protein SIR3 97.1 0.0021 7.3E-08 59.5 10.1 26 28-53 44-69 (318)
118 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0018 6.3E-08 56.9 9.3 29 25-53 19-47 (235)
119 4gp7_A Metallophosphoesterase; 97.1 0.00026 8.9E-09 59.6 3.4 23 26-48 6-28 (171)
120 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00081 2.8E-08 63.0 7.0 91 18-128 160-250 (330)
121 2b8t_A Thymidine kinase; deoxy 97.1 0.00076 2.6E-08 59.2 6.1 41 27-69 10-50 (223)
122 3dm5_A SRP54, signal recogniti 97.0 0.0053 1.8E-07 59.4 12.2 95 30-133 101-197 (443)
123 4b3f_X DNA-binding protein smu 97.0 0.00066 2.3E-08 69.8 6.0 67 14-82 189-256 (646)
124 2orw_A Thymidine kinase; TMTK, 97.0 0.00086 3E-08 57.1 5.7 39 28-68 2-40 (184)
125 3jvv_A Twitching mobility prot 96.9 0.001 3.6E-08 62.8 6.3 28 26-53 120-147 (356)
126 1cr0_A DNA primase/helicase; R 96.9 0.0039 1.3E-07 57.3 10.1 38 17-54 23-60 (296)
127 3d31_A Sulfate/molybdate ABC t 96.9 7.7E-05 2.6E-09 70.3 -1.7 137 5-147 3-176 (348)
128 1l8q_A Chromosomal replication 96.9 0.0027 9.3E-08 59.2 8.9 25 29-53 37-61 (324)
129 2px0_A Flagellar biosynthesis 96.9 0.0041 1.4E-07 57.2 9.6 26 28-53 104-129 (296)
130 2o0j_A Terminase, DNA packagin 96.9 0.0023 7.9E-08 60.9 8.1 72 11-82 160-231 (385)
131 2cvh_A DNA repair and recombin 96.9 0.0014 4.9E-08 57.1 6.2 27 25-51 16-42 (220)
132 1yqt_A RNAse L inhibitor; ATP- 96.9 0.0037 1.3E-07 62.6 9.9 118 27-146 310-449 (538)
133 1vma_A Cell division protein F 96.9 0.0064 2.2E-07 56.1 10.7 108 28-145 103-212 (306)
134 2eyu_A Twitching motility prot 96.8 0.00083 2.8E-08 60.7 4.4 35 17-53 15-49 (261)
135 3ozx_A RNAse L inhibitor; ATP 96.8 0.0021 7.2E-08 64.3 7.6 121 26-147 291-434 (538)
136 3cpe_A Terminase, DNA packagin 96.8 0.002 6.9E-08 65.4 7.6 74 11-84 160-233 (592)
137 2gk6_A Regulator of nonsense t 96.8 0.0017 5.7E-08 66.5 6.7 67 14-81 180-246 (624)
138 3e70_C DPA, signal recognition 96.8 0.0061 2.1E-07 56.8 9.8 26 28-53 128-153 (328)
139 3bos_A Putative DNA replicatio 96.7 0.0082 2.8E-07 52.8 10.0 25 28-52 51-75 (242)
140 3nh6_A ATP-binding cassette SU 96.7 0.00062 2.1E-08 62.9 2.6 46 99-144 189-236 (306)
141 3b5x_A Lipid A export ATP-bind 96.7 0.0012 4.2E-08 66.9 4.8 49 4-52 342-392 (582)
142 1yqt_A RNAse L inhibitor; ATP- 96.6 0.006 2.1E-07 61.0 9.5 47 100-146 158-206 (538)
143 1xx6_A Thymidine kinase; NESG, 96.6 0.0021 7.2E-08 55.0 5.2 41 27-69 6-46 (191)
144 3j16_B RLI1P; ribosome recycli 96.6 0.0088 3E-07 60.6 10.5 113 29-146 378-515 (608)
145 2xzl_A ATP-dependent helicase 96.6 0.0019 6.5E-08 67.8 5.7 68 14-82 360-427 (802)
146 2v9p_A Replication protein E1; 96.6 0.00073 2.5E-08 62.3 2.3 48 5-53 103-150 (305)
147 3h4m_A Proteasome-activating n 96.6 0.0079 2.7E-07 54.8 9.3 27 27-53 49-75 (285)
148 1htw_A HI0065; nucleotide-bind 96.5 0.00072 2.5E-08 56.1 1.6 46 8-53 12-57 (158)
149 1ls1_A Signal recognition part 96.5 0.022 7.6E-07 52.2 11.8 26 28-53 97-122 (295)
150 3bk7_A ABC transporter ATP-bin 96.5 0.0046 1.6E-07 62.7 7.8 116 26-146 379-519 (607)
151 2wjy_A Regulator of nonsense t 96.5 0.0032 1.1E-07 66.0 6.7 67 14-81 356-422 (800)
152 2d2e_A SUFC protein; ABC-ATPas 96.4 5.7E-05 2E-09 68.0 -6.1 52 1-52 1-52 (250)
153 3b85_A Phosphate starvation-in 96.4 0.0019 6.3E-08 56.2 3.6 34 19-52 12-45 (208)
154 1g6h_A High-affinity branched- 96.4 7.1E-05 2.4E-09 67.6 -5.9 50 3-52 7-56 (257)
155 2cbz_A Multidrug resistance-as 96.4 8E-05 2.7E-09 66.4 -5.6 52 1-52 1-54 (237)
156 2chg_A Replication factor C sm 96.4 0.057 1.9E-06 46.5 13.1 36 17-52 24-61 (226)
157 3b9q_A Chloroplast SRP recepto 96.3 0.025 8.6E-07 52.0 10.9 26 28-53 99-124 (302)
158 1njg_A DNA polymerase III subu 96.3 0.031 1.1E-06 48.9 11.3 36 17-52 30-68 (250)
159 3vkw_A Replicase large subunit 96.3 0.0035 1.2E-07 60.5 5.1 82 30-130 162-246 (446)
160 1sxj_A Activator 1 95 kDa subu 96.3 0.026 8.8E-07 56.2 11.6 24 30-53 78-101 (516)
161 2z4s_A Chromosomal replication 96.3 0.0099 3.4E-07 58.0 8.4 38 29-66 130-167 (440)
162 3bk7_A ABC transporter ATP-bin 96.3 0.011 3.8E-07 59.9 9.0 47 100-146 228-276 (607)
163 1fnn_A CDC6P, cell division co 96.2 0.019 6.4E-07 54.6 9.9 23 31-53 46-68 (389)
164 2ewv_A Twitching motility prot 96.2 0.0034 1.2E-07 59.8 4.4 28 26-53 133-160 (372)
165 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0063 2.2E-07 54.6 5.9 26 28-53 38-63 (262)
166 3syl_A Protein CBBX; photosynt 96.2 0.01 3.5E-07 54.7 7.5 25 28-52 66-90 (309)
167 2v1u_A Cell division control p 96.1 0.011 3.9E-07 56.0 8.0 26 28-53 43-68 (387)
168 2olj_A Amino acid ABC transpor 96.1 0.00011 3.9E-09 66.4 -5.9 50 3-52 24-73 (263)
169 2yhs_A FTSY, cell division pro 96.1 0.055 1.9E-06 52.9 12.5 26 28-53 292-317 (503)
170 2og2_A Putative signal recogni 96.1 0.035 1.2E-06 52.3 10.7 26 28-53 156-181 (359)
171 2zu0_C Probable ATP-dependent 96.1 0.00013 4.4E-09 66.3 -6.0 50 3-52 20-69 (267)
172 1nlf_A Regulatory protein REPA 96.1 0.018 6.1E-07 52.3 8.4 27 25-51 26-52 (279)
173 3j16_B RLI1P; ribosome recycli 96.0 0.013 4.6E-07 59.3 8.1 45 100-144 221-267 (608)
174 1w4r_A Thymidine kinase; type 96.0 0.011 3.7E-07 50.4 6.1 39 28-68 19-57 (195)
175 2j9r_A Thymidine kinase; TK1, 96.0 0.008 2.7E-07 52.0 5.3 41 28-70 27-67 (214)
176 2qen_A Walker-type ATPase; unk 96.0 0.069 2.4E-06 49.7 12.4 36 17-52 19-54 (350)
177 1ji0_A ABC transporter; ATP bi 96.0 0.00013 4.5E-09 65.2 -6.3 50 3-52 6-55 (240)
178 1z6g_A Guanylate kinase; struc 95.9 0.0026 8.9E-08 55.7 2.1 34 20-53 14-47 (218)
179 3eie_A Vacuolar protein sortin 95.9 0.015 5.1E-07 54.1 7.5 25 29-53 51-75 (322)
180 3lnc_A Guanylate kinase, GMP k 95.9 0.0017 5.9E-08 57.4 0.9 34 17-50 15-48 (231)
181 3ux8_A Excinuclease ABC, A sub 95.9 0.014 4.6E-07 60.3 7.8 46 101-146 203-252 (670)
182 2gza_A Type IV secretion syste 95.9 0.0037 1.3E-07 59.3 3.2 35 20-54 166-200 (361)
183 1b0u_A Histidine permease; ABC 95.9 0.00016 5.5E-09 65.5 -6.1 49 3-51 6-54 (262)
184 3cf0_A Transitional endoplasmi 95.9 0.011 3.7E-07 54.5 6.2 27 27-53 47-73 (301)
185 3lda_A DNA repair protein RAD5 95.9 0.015 5E-07 55.8 7.3 26 27-52 176-201 (400)
186 3ozx_A RNAse L inhibitor; ATP 95.9 0.014 4.6E-07 58.4 7.3 45 100-144 138-184 (538)
187 1znw_A Guanylate kinase, GMP k 95.9 0.0036 1.2E-07 54.3 2.7 29 24-52 15-43 (207)
188 2ihy_A ABC transporter, ATP-bi 95.8 0.00017 6E-09 65.8 -6.2 50 3-52 21-70 (279)
189 3lfu_A DNA helicase II; SF1 he 95.8 0.0067 2.3E-07 62.3 5.0 69 14-84 9-79 (647)
190 1rj9_A FTSY, signal recognitio 95.8 0.073 2.5E-06 49.0 11.4 27 28-54 101-127 (304)
191 2r6a_A DNAB helicase, replicat 95.8 0.039 1.3E-06 54.0 10.1 36 19-54 193-228 (454)
192 1d2n_A N-ethylmaleimide-sensit 95.8 0.0095 3.2E-07 53.9 5.3 24 29-52 64-87 (272)
193 2r2a_A Uncharacterized protein 95.8 0.037 1.3E-06 47.5 8.7 20 31-50 7-26 (199)
194 1jr3_A DNA polymerase III subu 95.7 0.041 1.4E-06 52.0 9.8 35 18-52 24-61 (373)
195 2qby_B CDC6 homolog 3, cell di 95.7 0.02 6.8E-07 54.4 7.6 24 29-52 45-68 (384)
196 3nwj_A ATSK2; P loop, shikimat 95.7 0.0037 1.3E-07 55.9 2.3 51 3-53 17-72 (250)
197 3qf4_A ABC transporter, ATP-bi 95.7 0.012 4.1E-07 59.6 6.3 45 99-143 478-524 (587)
198 2oap_1 GSPE-2, type II secreti 95.7 0.0056 1.9E-07 60.8 3.7 37 17-53 248-284 (511)
199 3tr0_A Guanylate kinase, GMP k 95.7 0.0043 1.5E-07 53.4 2.7 27 26-52 4-30 (205)
200 3qf4_B Uncharacterized ABC tra 95.7 0.0044 1.5E-07 63.0 3.0 46 7-52 358-404 (598)
201 4f4c_A Multidrug resistance pr 95.7 0.0091 3.1E-07 66.3 5.7 49 5-53 1078-1129(1321)
202 1kgd_A CASK, peripheral plasma 95.7 0.0049 1.7E-07 52.1 2.8 27 27-53 3-29 (180)
203 2qp9_X Vacuolar protein sortin 95.7 0.02 6.8E-07 54.1 7.2 25 29-53 84-108 (355)
204 2qm8_A GTPase/ATPase; G protei 95.6 0.0032 1.1E-07 59.2 1.5 47 6-52 32-78 (337)
205 1sxj_E Activator 1 40 kDa subu 95.6 0.063 2.2E-06 50.3 10.4 21 31-51 38-58 (354)
206 2iw3_A Elongation factor 3A; a 95.5 0.01 3.5E-07 63.0 5.0 119 21-143 453-593 (986)
207 3hgt_A HDA1 complex subunit 3; 95.5 0.076 2.6E-06 48.9 10.2 114 243-388 115-238 (328)
208 1zu4_A FTSY; GTPase, signal re 95.5 0.026 9E-07 52.4 7.2 26 28-53 104-129 (320)
209 1lvg_A Guanylate kinase, GMP k 95.5 0.0047 1.6E-07 53.1 1.9 26 27-52 2-27 (198)
210 2qby_A CDC6 homolog 1, cell di 95.5 0.017 5.7E-07 54.8 6.0 25 29-53 45-69 (386)
211 1p9r_A General secretion pathw 95.5 0.0098 3.4E-07 57.4 4.3 27 27-53 165-191 (418)
212 1mv5_A LMRA, multidrug resista 95.5 0.00031 1.1E-08 62.9 -5.9 47 6-52 4-51 (243)
213 2ixe_A Antigen peptide transpo 95.5 0.00038 1.3E-08 63.4 -5.4 50 3-52 16-68 (271)
214 2ffh_A Protein (FFH); SRP54, s 95.4 0.17 5.6E-06 48.8 12.8 91 29-128 98-190 (425)
215 1s96_A Guanylate kinase, GMP k 95.4 0.0069 2.4E-07 53.0 2.8 29 25-53 12-40 (219)
216 2ce7_A Cell division protein F 95.3 0.021 7.3E-07 55.9 6.2 24 30-53 50-73 (476)
217 1gm5_A RECG; helicase, replica 95.3 0.023 7.8E-07 59.4 6.7 78 254-336 417-495 (780)
218 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0061 2.1E-07 59.6 2.2 44 3-52 118-161 (460)
219 2orv_A Thymidine kinase; TP4A 95.3 0.02 7E-07 50.0 5.3 41 28-70 18-58 (234)
220 3aez_A Pantothenate kinase; tr 95.3 0.011 3.6E-07 54.9 3.7 27 26-52 87-113 (312)
221 2ehv_A Hypothetical protein PH 95.3 0.0073 2.5E-07 53.7 2.6 27 25-51 26-52 (251)
222 4f4c_A Multidrug resistance pr 95.3 0.033 1.1E-06 61.9 8.2 119 6-127 418-581 (1321)
223 1zp6_A Hypothetical protein AT 95.2 0.0057 2E-07 52.0 1.7 28 25-52 5-32 (191)
224 3b9p_A CG5977-PA, isoform A; A 95.2 0.01 3.5E-07 54.4 3.4 26 28-53 53-78 (297)
225 1sq5_A Pantothenate kinase; P- 95.2 0.012 4.2E-07 54.4 3.9 26 27-52 78-103 (308)
226 1iqp_A RFCS; clamp loader, ext 95.2 0.094 3.2E-06 48.3 10.0 35 18-52 33-69 (327)
227 1sxj_D Activator 1 41 kDa subu 95.2 0.05 1.7E-06 51.0 8.1 36 17-52 44-81 (353)
228 3u61_B DNA polymerase accessor 95.1 0.13 4.4E-06 47.6 10.8 35 18-52 34-71 (324)
229 3tau_A Guanylate kinase, GMP k 95.1 0.0096 3.3E-07 51.6 2.8 27 27-53 6-32 (208)
230 2j41_A Guanylate kinase; GMP, 95.1 0.0095 3.3E-07 51.2 2.6 27 26-52 3-29 (207)
231 2pze_A Cystic fibrosis transme 95.1 0.0079 2.7E-07 53.1 2.0 51 3-53 6-58 (229)
232 3vfd_A Spastin; ATPase, microt 95.0 0.033 1.1E-06 53.3 6.5 25 28-52 147-171 (389)
233 3pfi_A Holliday junction ATP-d 95.0 0.05 1.7E-06 50.7 7.6 23 30-52 56-78 (338)
234 2q6t_A DNAB replication FORK h 95.0 0.15 5E-06 49.7 11.1 33 22-54 193-225 (444)
235 3vaa_A Shikimate kinase, SK; s 95.0 0.011 3.8E-07 50.8 2.8 36 18-53 14-49 (199)
236 3ney_A 55 kDa erythrocyte memb 95.0 0.011 3.9E-07 50.5 2.8 27 27-53 17-43 (197)
237 2ff7_A Alpha-hemolysin translo 95.0 0.0083 2.8E-07 53.6 1.9 34 19-52 25-58 (247)
238 2fna_A Conserved hypothetical 95.0 0.15 5.3E-06 47.4 10.9 35 17-53 20-54 (357)
239 4b4t_J 26S protease regulatory 94.9 0.048 1.6E-06 52.0 7.1 25 29-53 182-206 (405)
240 3a00_A Guanylate kinase, GMP k 94.9 0.0091 3.1E-07 50.7 2.0 25 29-53 1-25 (186)
241 1uaa_A REP helicase, protein ( 94.9 0.019 6.4E-07 59.3 4.6 69 14-84 2-72 (673)
242 1j8m_F SRP54, signal recogniti 94.9 0.23 8E-06 45.3 11.5 92 29-129 98-191 (297)
243 2qi9_C Vitamin B12 import ATP- 94.9 0.0094 3.2E-07 53.3 2.0 31 22-52 19-49 (249)
244 1xwi_A SKD1 protein; VPS4B, AA 94.9 0.027 9.2E-07 52.4 5.2 25 29-53 45-69 (322)
245 3e2i_A Thymidine kinase; Zn-bi 94.9 0.037 1.3E-06 47.8 5.6 42 27-70 26-67 (219)
246 3gd7_A Fusion complex of cysti 94.9 0.0008 2.7E-08 64.3 -5.4 48 4-51 20-69 (390)
247 2ghi_A Transport protein; mult 94.9 0.0096 3.3E-07 53.6 2.0 49 4-52 18-69 (260)
248 1pzn_A RAD51, DNA repair and r 94.8 0.012 4E-07 55.5 2.6 28 26-53 128-155 (349)
249 3hu3_A Transitional endoplasmi 94.8 0.05 1.7E-06 53.6 7.3 27 27-53 236-262 (489)
250 3n70_A Transport activator; si 94.8 0.019 6.6E-07 46.4 3.6 35 18-52 13-47 (145)
251 2zpa_A Uncharacterized protein 94.8 0.05 1.7E-06 55.2 7.2 59 14-77 175-235 (671)
252 3c8u_A Fructokinase; YP_612366 94.7 0.012 4.1E-07 50.9 2.3 26 27-52 20-45 (208)
253 2yz2_A Putative ABC transporte 94.7 0.011 3.7E-07 53.5 2.0 34 19-52 23-56 (266)
254 3d8b_A Fidgetin-like protein 1 94.7 0.026 9E-07 53.3 4.8 26 28-53 116-141 (357)
255 1in4_A RUVB, holliday junction 94.7 0.014 4.7E-07 54.7 2.8 45 9-53 24-75 (334)
256 3pvs_A Replication-associated 94.7 0.019 6.5E-07 56.0 3.8 32 22-53 41-74 (447)
257 2jeo_A Uridine-cytidine kinase 94.6 0.012 4.1E-07 52.4 2.1 36 17-52 13-48 (245)
258 1tf7_A KAIC; homohexamer, hexa 94.6 0.045 1.5E-06 54.6 6.3 98 25-126 277-379 (525)
259 1a5t_A Delta prime, HOLB; zinc 94.6 0.15 5.2E-06 47.5 9.7 37 16-52 4-47 (334)
260 1hqc_A RUVB; extended AAA-ATPa 94.5 0.07 2.4E-06 49.3 7.2 24 29-52 38-61 (324)
261 4a74_A DNA repair and recombin 94.4 0.012 3.9E-07 51.6 1.5 28 25-52 21-48 (231)
262 3co5_A Putative two-component 94.4 0.021 7.2E-07 46.1 2.9 34 17-50 15-48 (143)
263 4eun_A Thermoresistant glucoki 94.3 0.02 6.8E-07 49.1 2.8 27 27-53 27-53 (200)
264 2chq_A Replication factor C sm 94.3 0.071 2.4E-06 49.0 6.7 33 20-52 27-61 (319)
265 3uie_A Adenylyl-sulfate kinase 94.3 0.02 7E-07 49.1 2.8 34 20-53 16-49 (200)
266 2bbs_A Cystic fibrosis transme 94.3 0.015 5.1E-07 53.2 1.9 28 25-52 60-87 (290)
267 3g5u_A MCG1178, multidrug resi 94.2 0.11 3.7E-06 57.6 8.8 47 6-52 390-439 (1284)
268 2gno_A DNA polymerase III, gam 94.2 0.091 3.1E-06 48.3 7.0 29 23-51 10-40 (305)
269 3u4q_A ATP-dependent helicase/ 94.2 0.039 1.3E-06 60.9 5.3 69 12-82 8-80 (1232)
270 1pjr_A PCRA; DNA repair, DNA r 94.1 0.04 1.4E-06 57.3 5.1 69 14-84 11-81 (724)
271 2zr9_A Protein RECA, recombina 94.1 0.051 1.7E-06 51.1 5.3 28 26-53 58-85 (349)
272 2obl_A ESCN; ATPase, hydrolase 94.1 0.011 3.8E-07 55.6 0.7 50 3-53 45-95 (347)
273 1w5s_A Origin recognition comp 94.1 0.073 2.5E-06 50.9 6.6 24 29-52 50-75 (412)
274 1sxj_B Activator 1 37 kDa subu 94.1 0.13 4.6E-06 47.2 8.1 35 18-52 29-65 (323)
275 2v3c_C SRP54, signal recogniti 94.1 0.09 3.1E-06 50.9 7.0 23 31-53 101-123 (432)
276 2j37_W Signal recognition part 94.1 0.44 1.5E-05 46.9 12.0 23 31-53 103-125 (504)
277 4a1f_A DNAB helicase, replicat 94.1 0.09 3.1E-06 49.0 6.7 48 17-66 34-81 (338)
278 3tqc_A Pantothenate kinase; bi 94.0 0.057 2E-06 50.0 5.3 34 19-52 76-115 (321)
279 1ye8_A Protein THEP1, hypothet 94.0 0.024 8.1E-07 47.8 2.5 22 31-52 2-23 (178)
280 3asz_A Uridine kinase; cytidin 94.0 0.02 6.8E-07 49.5 2.1 26 27-52 4-29 (211)
281 1n0w_A DNA repair protein RAD5 94.0 0.034 1.2E-06 49.0 3.7 28 25-52 20-47 (243)
282 3cmu_A Protein RECA, recombina 94.0 0.052 1.8E-06 61.7 5.7 39 28-68 1426-1464(2050)
283 2dpy_A FLII, flagellum-specifi 93.8 0.018 6E-07 56.0 1.5 50 3-53 131-181 (438)
284 2onk_A Molybdate/tungstate ABC 93.8 0.022 7.6E-07 50.5 2.1 48 99-146 125-174 (240)
285 2bdt_A BH3686; alpha-beta prot 93.8 0.019 6.5E-07 48.7 1.6 23 29-51 2-24 (189)
286 2pjz_A Hypothetical protein ST 93.8 0.021 7E-07 51.5 1.9 32 20-52 22-53 (263)
287 4b4t_H 26S protease regulatory 93.8 0.095 3.3E-06 50.7 6.6 26 28-53 242-267 (467)
288 4b4t_K 26S protease regulatory 93.8 0.082 2.8E-06 51.0 6.0 25 29-53 206-230 (428)
289 1pui_A ENGB, probable GTP-bind 93.8 0.0054 1.8E-07 53.0 -2.1 47 1-50 1-47 (210)
290 1ypw_A Transitional endoplasmi 93.7 0.063 2.2E-06 56.4 5.6 27 27-53 236-262 (806)
291 2i3b_A HCR-ntpase, human cance 93.7 0.025 8.4E-07 48.2 2.1 25 29-53 1-25 (189)
292 2qor_A Guanylate kinase; phosp 93.7 0.022 7.5E-07 49.0 1.8 29 25-53 8-36 (204)
293 1jbk_A CLPB protein; beta barr 93.7 0.07 2.4E-06 44.6 4.9 37 16-52 28-66 (195)
294 1kag_A SKI, shikimate kinase I 93.7 0.027 9.1E-07 46.9 2.2 26 28-53 3-28 (173)
295 1knq_A Gluconate kinase; ALFA/ 93.6 0.027 9.3E-07 47.0 2.2 25 28-52 7-31 (175)
296 2qag_B Septin-6, protein NEDD5 93.6 0.027 9.4E-07 54.2 2.4 42 10-52 22-65 (427)
297 3hr8_A Protein RECA; alpha and 93.6 0.038 1.3E-06 52.0 3.2 27 27-53 59-85 (356)
298 1qvr_A CLPB protein; coiled co 93.5 0.17 5.8E-06 53.6 8.5 35 18-52 178-214 (854)
299 2zan_A Vacuolar protein sortin 93.4 0.062 2.1E-06 52.3 4.7 26 28-53 166-191 (444)
300 2xxa_A Signal recognition part 93.4 0.52 1.8E-05 45.5 11.1 91 30-128 101-193 (433)
301 2w58_A DNAI, primosome compone 93.3 0.061 2.1E-06 46.0 3.9 24 30-53 55-78 (202)
302 4b4t_I 26S protease regulatory 93.3 0.13 4.5E-06 49.3 6.5 25 29-53 216-240 (437)
303 4b4t_L 26S protease subunit RP 93.3 0.052 1.8E-06 52.4 3.8 25 29-53 215-239 (437)
304 1tq4_A IIGP1, interferon-induc 93.1 0.062 2.1E-06 51.6 4.0 35 17-51 37-91 (413)
305 1ex7_A Guanylate kinase; subst 93.0 0.036 1.2E-06 47.0 2.0 24 30-53 2-25 (186)
306 3cf2_A TER ATPase, transitiona 93.0 0.17 5.7E-06 52.8 7.2 24 30-53 239-262 (806)
307 2p65_A Hypothetical protein PF 92.9 0.078 2.7E-06 44.2 4.0 36 17-52 29-66 (187)
308 1tf7_A KAIC; homohexamer, hexa 92.9 0.021 7.1E-07 57.0 0.4 35 16-50 25-60 (525)
309 2bbw_A Adenylate kinase 4, AK4 92.9 0.049 1.7E-06 48.3 2.8 25 28-52 26-50 (246)
310 4b4t_M 26S protease regulatory 92.9 0.048 1.6E-06 52.6 2.9 25 29-53 215-239 (434)
311 3a8t_A Adenylate isopentenyltr 92.8 0.043 1.5E-06 50.9 2.3 26 28-53 39-64 (339)
312 2eyq_A TRCF, transcription-rep 92.6 0.37 1.3E-05 52.7 9.7 79 253-336 651-730 (1151)
313 2dr3_A UPF0273 protein PH0284; 92.6 0.093 3.2E-06 46.2 4.2 28 26-53 20-47 (247)
314 1qhx_A CPT, protein (chloramph 92.6 0.059 2E-06 44.9 2.7 26 28-53 2-27 (178)
315 3kta_A Chromosome segregation 92.5 0.057 1.9E-06 45.3 2.6 21 31-51 28-48 (182)
316 2zts_A Putative uncharacterize 92.5 0.055 1.9E-06 47.8 2.6 28 26-53 27-54 (251)
317 1svm_A Large T antigen; AAA+ f 92.5 0.069 2.4E-06 50.6 3.3 33 20-52 160-192 (377)
318 3trf_A Shikimate kinase, SK; a 92.4 0.061 2.1E-06 45.2 2.7 25 29-53 5-29 (185)
319 2qmh_A HPR kinase/phosphorylas 92.4 0.056 1.9E-06 46.1 2.3 25 28-52 33-57 (205)
320 3cm0_A Adenylate kinase; ATP-b 92.4 0.045 1.5E-06 46.1 1.7 26 28-53 3-28 (186)
321 3k1j_A LON protease, ATP-depen 92.4 0.15 5E-06 51.8 5.8 42 12-53 43-84 (604)
322 1r6b_X CLPA protein; AAA+, N-t 92.4 0.24 8.1E-06 51.8 7.5 32 20-51 196-229 (758)
323 2qgz_A Helicase loader, putati 92.3 0.1 3.5E-06 48.1 4.2 25 29-53 152-176 (308)
324 1kht_A Adenylate kinase; phosp 92.3 0.066 2.3E-06 45.1 2.7 26 28-53 2-27 (192)
325 3exa_A TRNA delta(2)-isopenten 92.3 0.057 1.9E-06 49.6 2.4 24 29-52 3-26 (322)
326 1sxj_C Activator 1 40 kDa subu 92.2 0.11 3.9E-06 48.4 4.4 37 16-52 31-69 (340)
327 2vp4_A Deoxynucleoside kinase; 92.1 0.079 2.7E-06 46.5 3.1 26 27-52 18-43 (230)
328 4e22_A Cytidylate kinase; P-lo 92.1 0.069 2.4E-06 47.6 2.7 27 27-53 25-51 (252)
329 2yv5_A YJEQ protein; hydrolase 92.1 0.097 3.3E-06 48.1 3.8 29 22-50 158-186 (302)
330 2ze6_A Isopentenyl transferase 92.1 0.056 1.9E-06 48.3 2.1 23 31-53 3-25 (253)
331 3lw7_A Adenylate kinase relate 92.0 0.063 2.2E-06 44.3 2.2 19 31-49 3-21 (179)
332 2qt1_A Nicotinamide riboside k 92.0 0.052 1.8E-06 46.7 1.7 29 24-52 16-44 (207)
333 3kb2_A SPBC2 prophage-derived 91.9 0.072 2.5E-06 44.0 2.5 23 31-53 3-25 (173)
334 1y63_A LMAJ004144AAA protein; 91.9 0.079 2.7E-06 44.6 2.8 26 27-52 8-33 (184)
335 1g5t_A COB(I)alamin adenosyltr 91.9 0.52 1.8E-05 40.0 7.8 39 29-69 28-66 (196)
336 1nij_A Hypothetical protein YJ 91.9 0.082 2.8E-06 49.0 3.0 23 30-52 5-27 (318)
337 1m7g_A Adenylylsulfate kinase; 91.8 0.089 3.1E-06 45.4 3.0 29 24-52 20-48 (211)
338 1f2t_A RAD50 ABC-ATPase; DNA d 91.8 0.078 2.7E-06 43.1 2.4 21 30-50 24-44 (149)
339 2bwj_A Adenylate kinase 5; pho 91.7 0.077 2.6E-06 45.1 2.4 29 25-53 8-36 (199)
340 3oiy_A Reverse gyrase helicase 91.7 0.18 6.2E-06 48.3 5.4 79 252-336 62-144 (414)
341 1xp8_A RECA protein, recombina 91.6 0.2 6.8E-06 47.3 5.4 28 26-53 71-98 (366)
342 2pez_A Bifunctional 3'-phospho 91.6 0.075 2.6E-06 44.4 2.3 25 28-52 4-28 (179)
343 2bjv_A PSP operon transcriptio 91.6 0.19 6.6E-06 44.9 5.1 30 24-53 24-53 (265)
344 3b60_A Lipid A export ATP-bind 91.5 0.064 2.2E-06 54.2 2.0 48 5-52 343-392 (582)
345 1ixz_A ATP-dependent metallopr 91.5 0.035 1.2E-06 49.5 0.0 24 30-53 50-73 (254)
346 2v54_A DTMP kinase, thymidylat 91.5 0.082 2.8E-06 45.1 2.4 26 28-53 3-28 (204)
347 3iij_A Coilin-interacting nucl 91.4 0.08 2.7E-06 44.3 2.2 27 27-53 9-35 (180)
348 2c95_A Adenylate kinase 1; tra 91.4 0.1 3.5E-06 44.1 2.9 28 26-53 6-33 (196)
349 2yl4_A ATP-binding cassette SU 91.4 0.068 2.3E-06 54.2 2.0 36 18-53 359-394 (595)
350 2d7d_A Uvrabc system protein B 91.4 0.18 6.1E-06 51.7 5.1 70 10-84 8-82 (661)
351 3io5_A Recombination and repai 91.3 0.25 8.6E-06 45.4 5.5 40 27-67 27-66 (333)
352 1rz3_A Hypothetical protein rb 91.3 0.081 2.8E-06 45.3 2.1 24 28-51 21-44 (201)
353 3sop_A Neuronal-specific septi 91.2 0.081 2.8E-06 47.8 2.2 23 31-53 4-26 (270)
354 4a82_A Cystic fibrosis transme 91.2 0.058 2E-06 54.5 1.3 35 18-52 356-390 (578)
355 1cke_A CK, MSSA, protein (cyti 91.2 0.098 3.3E-06 45.5 2.6 25 29-53 5-29 (227)
356 1u0l_A Probable GTPase ENGC; p 91.2 0.13 4.3E-06 47.3 3.4 30 23-52 163-192 (301)
357 2f1r_A Molybdopterin-guanine d 91.1 0.05 1.7E-06 45.4 0.6 24 30-53 3-26 (171)
358 3nbx_X ATPase RAVA; AAA+ ATPas 91.1 0.17 5.7E-06 49.9 4.4 41 13-53 25-65 (500)
359 3foz_A TRNA delta(2)-isopenten 91.1 0.086 3E-06 48.3 2.2 23 30-52 11-33 (316)
360 3tlx_A Adenylate kinase 2; str 91.0 0.16 5.4E-06 45.0 3.8 28 26-53 26-53 (243)
361 1gvn_B Zeta; postsegregational 91.0 0.094 3.2E-06 47.8 2.3 24 29-52 33-56 (287)
362 2rhm_A Putative kinase; P-loop 91.0 0.093 3.2E-06 44.3 2.2 26 28-53 4-29 (193)
363 1ly1_A Polynucleotide kinase; 90.9 0.1 3.4E-06 43.5 2.4 21 31-51 4-24 (181)
364 4ag6_A VIRB4 ATPase, type IV s 90.9 0.11 3.7E-06 49.7 2.8 41 28-70 34-74 (392)
365 1iy2_A ATP-dependent metallopr 90.8 0.043 1.5E-06 49.7 -0.1 24 30-53 74-97 (278)
366 2rcn_A Probable GTPase ENGC; Y 90.8 0.16 5.5E-06 47.7 3.8 27 26-52 212-238 (358)
367 3umf_A Adenylate kinase; rossm 90.8 0.1 3.4E-06 45.4 2.2 30 25-54 25-54 (217)
368 2yvu_A Probable adenylyl-sulfa 90.7 0.11 3.7E-06 43.8 2.3 26 28-53 12-37 (186)
369 2p67_A LAO/AO transport system 90.5 0.068 2.3E-06 50.0 1.0 30 23-52 50-79 (341)
370 2r44_A Uncharacterized protein 90.5 0.12 4.1E-06 48.0 2.7 38 16-53 33-70 (331)
371 3qf7_A RAD50; ABC-ATPase, ATPa 90.5 0.1 3.5E-06 49.3 2.2 22 28-50 23-44 (365)
372 3t61_A Gluconokinase; PSI-biol 90.5 0.11 3.6E-06 44.5 2.1 25 29-53 18-42 (202)
373 4eaq_A DTMP kinase, thymidylat 90.5 0.26 8.9E-06 43.1 4.7 28 27-54 24-51 (229)
374 3cmu_A Protein RECA, recombina 90.5 0.29 9.8E-06 55.9 6.0 95 25-130 1077-1171(2050)
375 1zd8_A GTP:AMP phosphotransfer 90.4 0.14 4.8E-06 44.7 2.8 26 28-53 6-31 (227)
376 2z43_A DNA repair and recombin 90.3 0.17 5.9E-06 46.9 3.6 27 27-53 105-131 (324)
377 1lw7_A Transcriptional regulat 90.3 0.089 3E-06 49.8 1.6 30 24-53 163-194 (365)
378 2plr_A DTMP kinase, probable t 90.2 0.12 4.2E-06 44.2 2.3 27 28-54 3-29 (213)
379 1aky_A Adenylate kinase; ATP:A 90.2 0.15 5E-06 44.3 2.8 26 28-53 3-28 (220)
380 4fcw_A Chaperone protein CLPB; 90.2 0.15 5.1E-06 46.7 3.0 23 30-52 48-70 (311)
381 1ofh_A ATP-dependent HSL prote 90.2 0.19 6.5E-06 45.8 3.7 26 28-53 49-74 (310)
382 1tev_A UMP-CMP kinase; ploop, 90.2 0.12 4.1E-06 43.5 2.2 25 29-53 3-27 (196)
383 3hws_A ATP-dependent CLP prote 90.2 0.23 7.7E-06 46.8 4.3 26 28-53 50-75 (363)
384 3fe2_A Probable ATP-dependent 90.1 0.67 2.3E-05 40.6 7.1 74 254-336 102-181 (242)
385 2ius_A DNA translocase FTSK; n 90.1 0.2 6.7E-06 49.5 3.8 42 28-69 166-209 (512)
386 3crm_A TRNA delta(2)-isopenten 90.0 0.13 4.4E-06 47.5 2.4 24 30-53 6-29 (323)
387 2if2_A Dephospho-COA kinase; a 89.9 0.14 4.7E-06 43.7 2.4 21 31-51 3-23 (204)
388 3d3q_A TRNA delta(2)-isopenten 89.9 0.13 4.6E-06 47.8 2.4 24 30-53 8-31 (340)
389 2wwf_A Thymidilate kinase, put 89.8 0.15 5.3E-06 43.6 2.6 26 27-52 8-33 (212)
390 1e9r_A Conjugal transfer prote 89.8 0.16 5.5E-06 49.2 3.0 42 29-72 53-94 (437)
391 1np6_A Molybdopterin-guanine d 89.7 0.25 8.6E-06 41.2 3.8 23 30-52 7-29 (174)
392 1nn5_A Similar to deoxythymidy 89.7 0.16 5.5E-06 43.6 2.6 26 27-52 7-32 (215)
393 1t6n_A Probable ATP-dependent 89.6 2.9 0.0001 35.7 10.8 76 254-336 82-163 (220)
394 2oxc_A Probable ATP-dependent 89.6 1.3 4.3E-05 38.4 8.5 76 252-336 90-171 (230)
395 3bh0_A DNAB-like replicative h 89.6 0.34 1.2E-05 44.6 5.0 45 20-66 59-103 (315)
396 1jjv_A Dephospho-COA kinase; P 89.6 0.15 5E-06 43.7 2.3 21 31-51 4-24 (206)
397 1v5w_A DMC1, meiotic recombina 89.5 0.22 7.5E-06 46.6 3.6 27 27-53 120-146 (343)
398 3fb4_A Adenylate kinase; psych 89.5 0.16 5.4E-06 43.8 2.4 23 31-53 2-24 (216)
399 3sr0_A Adenylate kinase; phosp 89.5 0.16 5.5E-06 43.7 2.4 24 31-54 2-25 (206)
400 3dl0_A Adenylate kinase; phosp 89.5 0.17 5.7E-06 43.7 2.6 23 31-53 2-24 (216)
401 1lv7_A FTSH; alpha/beta domain 89.4 0.16 5.4E-06 45.2 2.5 25 29-53 45-69 (257)
402 1odf_A YGR205W, hypothetical 3 89.4 0.15 5.1E-06 46.5 2.3 24 29-52 31-54 (290)
403 2cdn_A Adenylate kinase; phosp 89.4 0.19 6.5E-06 42.8 2.9 26 28-53 19-44 (201)
404 2v1x_A ATP-dependent DNA helic 89.4 0.42 1.4E-05 48.3 5.8 59 254-321 84-144 (591)
405 4ddu_A Reverse gyrase; topoiso 89.3 0.21 7.3E-06 54.2 3.8 78 252-336 119-201 (1104)
406 1nks_A Adenylate kinase; therm 89.3 0.16 5.5E-06 42.7 2.3 23 31-53 3-25 (194)
407 2vli_A Antibiotic resistance p 89.3 0.17 5.8E-06 42.2 2.4 26 28-53 4-29 (183)
408 2jaq_A Deoxyguanosine kinase; 89.3 0.18 6E-06 42.9 2.6 23 31-53 2-24 (205)
409 3qks_A DNA double-strand break 89.2 0.17 5.9E-06 43.4 2.4 21 30-50 24-44 (203)
410 1via_A Shikimate kinase; struc 89.2 0.15 5.1E-06 42.4 2.0 23 31-53 6-28 (175)
411 2x8a_A Nuclear valosin-contain 89.1 0.15 5.1E-06 46.1 2.0 24 30-53 45-68 (274)
412 1ojl_A Transcriptional regulat 89.1 0.33 1.1E-05 44.5 4.5 29 24-52 20-48 (304)
413 1xjc_A MOBB protein homolog; s 89.0 0.28 9.6E-06 40.7 3.5 23 30-52 5-27 (169)
414 3ux8_A Excinuclease ABC, A sub 88.8 0.13 4.3E-06 53.0 1.5 27 22-48 341-367 (670)
415 3bor_A Human initiation factor 88.8 1.1 3.6E-05 39.2 7.4 76 253-336 97-178 (237)
416 1zak_A Adenylate kinase; ATP:A 88.7 0.16 5.6E-06 44.0 2.0 26 28-53 4-29 (222)
417 3ber_A Probable ATP-dependent 88.7 1.8 6.1E-05 38.1 8.9 75 253-336 110-191 (249)
418 1zuh_A Shikimate kinase; alpha 88.6 0.22 7.5E-06 41.0 2.6 24 30-53 8-31 (168)
419 3uk6_A RUVB-like 2; hexameric 88.6 0.22 7.4E-06 46.9 2.9 25 29-53 70-94 (368)
420 3eph_A TRNA isopentenyltransfe 88.5 0.18 6.1E-06 48.0 2.2 23 30-52 3-25 (409)
421 1t9h_A YLOQ, probable GTPase E 88.5 0.062 2.1E-06 49.4 -1.0 27 24-50 168-194 (307)
422 2p5t_B PEZT; postsegregational 88.4 0.15 5.1E-06 45.4 1.5 25 29-53 32-56 (253)
423 1vec_A ATP-dependent RNA helic 88.4 2.4 8.3E-05 35.7 9.3 76 253-336 70-151 (206)
424 3euj_A Chromosome partition pr 88.1 0.19 6.4E-06 49.2 2.1 26 26-52 27-52 (483)
425 2www_A Methylmalonic aciduria 88.1 0.52 1.8E-05 44.1 5.1 24 29-52 74-97 (349)
426 1ak2_A Adenylate kinase isoenz 88.1 0.26 8.8E-06 43.2 2.8 26 28-53 15-40 (233)
427 1ukz_A Uridylate kinase; trans 88.1 0.23 7.9E-06 42.3 2.5 25 29-53 15-39 (203)
428 3bgw_A DNAB-like replicative h 88.0 0.35 1.2E-05 46.9 4.0 43 22-66 190-232 (444)
429 3be4_A Adenylate kinase; malar 88.0 0.24 8.2E-06 42.8 2.6 26 28-53 4-29 (217)
430 3a4m_A L-seryl-tRNA(SEC) kinas 87.9 0.22 7.4E-06 44.6 2.3 25 28-52 3-27 (260)
431 1qde_A EIF4A, translation init 87.9 1.4 4.6E-05 37.9 7.4 75 252-336 80-160 (224)
432 1e6c_A Shikimate kinase; phosp 87.9 0.21 7.1E-06 41.2 2.0 24 30-53 3-26 (173)
433 3cf2_A TER ATPase, transitiona 87.7 0.55 1.9E-05 48.9 5.4 24 30-53 512-535 (806)
434 3qkt_A DNA double-strand break 87.6 0.22 7.6E-06 46.4 2.3 21 30-50 24-44 (339)
435 1e69_A Chromosome segregation 87.6 0.24 8.1E-06 45.9 2.4 23 28-51 24-46 (322)
436 1oix_A RAS-related protein RAB 87.5 0.24 8.3E-06 41.7 2.3 22 31-52 31-52 (191)
437 1gtv_A TMK, thymidylate kinase 87.5 0.12 4.1E-06 44.5 0.3 23 31-53 2-24 (214)
438 1qf9_A UMP/CMP kinase, protein 87.5 0.24 8.1E-06 41.6 2.2 24 30-53 7-30 (194)
439 3v9p_A DTMP kinase, thymidylat 87.5 0.25 8.5E-06 43.2 2.3 29 24-52 20-48 (227)
440 3auy_A DNA double-strand break 87.4 0.22 7.7E-06 47.1 2.2 22 30-51 26-47 (371)
441 2f9l_A RAB11B, member RAS onco 87.4 0.25 8.6E-06 41.8 2.3 22 31-52 7-28 (199)
442 2z0h_A DTMP kinase, thymidylat 87.4 0.26 8.8E-06 41.6 2.4 22 31-52 2-23 (197)
443 4tmk_A Protein (thymidylate ki 87.3 0.64 2.2E-05 40.1 4.9 25 28-52 2-26 (213)
444 2pt5_A Shikimate kinase, SK; a 87.3 0.27 9.2E-06 40.3 2.3 23 31-53 2-24 (168)
445 1e4v_A Adenylate kinase; trans 87.2 0.26 8.8E-06 42.5 2.3 23 31-53 2-24 (214)
446 2pl3_A Probable ATP-dependent 87.2 3.6 0.00012 35.6 9.8 74 253-336 96-176 (236)
447 2iyv_A Shikimate kinase, SK; t 87.2 0.23 7.8E-06 41.6 1.9 24 30-53 3-26 (184)
448 1vht_A Dephospho-COA kinase; s 87.2 0.24 8.1E-06 42.8 2.0 23 29-51 4-26 (218)
449 2xb4_A Adenylate kinase; ATP-b 87.1 0.27 9.4E-06 42.7 2.4 23 31-53 2-24 (223)
450 1w1w_A Structural maintenance 87.1 0.29 9.8E-06 47.4 2.7 26 27-52 24-49 (430)
451 2pbr_A DTMP kinase, thymidylat 87.0 0.29 9.8E-06 41.1 2.4 22 31-52 2-23 (195)
452 3ice_A Transcription terminati 86.9 0.29 9.9E-06 46.3 2.5 31 22-52 167-197 (422)
453 2gxq_A Heat resistant RNA depe 86.8 0.99 3.4E-05 38.2 5.8 73 253-336 71-149 (207)
454 1uf9_A TT1252 protein; P-loop, 86.8 0.29 9.9E-06 41.5 2.4 23 30-52 9-31 (203)
455 3iuy_A Probable ATP-dependent 86.8 0.94 3.2E-05 39.1 5.8 74 253-336 93-172 (228)
456 3t15_A Ribulose bisphosphate c 86.7 0.29 9.8E-06 44.6 2.4 24 30-53 37-60 (293)
457 2i1q_A DNA repair and recombin 86.6 0.4 1.4E-05 44.3 3.3 26 27-52 96-121 (322)
458 3m6a_A ATP-dependent protease 86.5 0.3 1E-05 48.8 2.6 26 28-53 107-132 (543)
459 3cr8_A Sulfate adenylyltranfer 86.5 0.19 6.6E-06 50.1 1.2 28 26-53 366-393 (552)
460 1q3t_A Cytidylate kinase; nucl 86.4 0.34 1.2E-05 42.5 2.6 29 25-53 12-40 (236)
461 1wrb_A DJVLGB; RNA helicase, D 86.3 1.8 6.1E-05 38.0 7.5 74 254-336 100-179 (253)
462 1wb9_A DNA mismatch repair pro 86.3 0.32 1.1E-05 50.9 2.7 24 28-51 606-629 (800)
463 4aby_A DNA repair protein RECN 86.0 0.11 3.6E-06 50.1 -1.0 23 27-50 59-81 (415)
464 1u94_A RECA protein, recombina 86.0 0.34 1.2E-05 45.5 2.6 28 26-53 60-87 (356)
465 2o5v_A DNA replication and rep 86.0 0.29 9.8E-06 46.0 2.0 28 294-321 302-329 (359)
466 2iw3_A Elongation factor 3A; a 85.9 0.17 6E-06 53.7 0.5 50 4-53 672-723 (986)
467 1tue_A Replication protein E1; 85.8 0.33 1.1E-05 41.5 2.1 20 30-49 59-78 (212)
468 4edh_A DTMP kinase, thymidylat 85.8 0.34 1.2E-05 41.9 2.3 26 27-52 4-29 (213)
469 1ewq_A DNA mismatch repair pro 85.7 0.34 1.1E-05 50.4 2.6 24 29-52 576-599 (765)
470 1g8p_A Magnesium-chelatase 38 85.7 0.48 1.6E-05 44.0 3.5 26 28-53 44-69 (350)
471 2gj8_A MNME, tRNA modification 85.6 0.32 1.1E-05 40.1 2.0 24 28-51 3-26 (172)
472 3pxg_A Negative regulator of g 85.4 0.69 2.3E-05 45.2 4.5 35 18-52 188-224 (468)
473 3tmk_A Thymidylate kinase; pho 85.4 0.43 1.5E-05 41.3 2.7 27 28-54 4-30 (216)
474 2c9o_A RUVB-like 1; hexameric 85.3 0.44 1.5E-05 46.4 3.0 25 29-53 63-87 (456)
475 3r20_A Cytidylate kinase; stru 85.2 0.45 1.5E-05 41.7 2.8 26 28-53 8-33 (233)
476 3thx_B DNA mismatch repair pro 85.2 0.27 9.2E-06 52.1 1.5 25 26-50 670-694 (918)
477 3lv8_A DTMP kinase, thymidylat 85.1 0.94 3.2E-05 39.7 4.8 26 27-52 25-50 (236)
478 2ga8_A Hypothetical 39.9 kDa p 85.0 0.53 1.8E-05 43.9 3.3 28 24-51 17-46 (359)
479 1um8_A ATP-dependent CLP prote 85.0 0.36 1.2E-05 45.6 2.3 25 29-53 72-96 (376)
480 1c9k_A COBU, adenosylcobinamid 84.7 0.47 1.6E-05 39.7 2.5 21 32-52 2-22 (180)
481 2wji_A Ferrous iron transport 84.7 0.43 1.5E-05 38.9 2.3 21 31-51 5-25 (165)
482 2dyk_A GTP-binding protein; GT 84.4 0.46 1.6E-05 38.2 2.4 22 31-52 3-24 (161)
483 1a7j_A Phosphoribulokinase; tr 84.3 0.46 1.6E-05 43.2 2.5 23 29-51 5-27 (290)
484 3thx_A DNA mismatch repair pro 84.2 0.41 1.4E-05 50.9 2.4 23 27-49 660-682 (934)
485 2grj_A Dephospho-COA kinase; T 84.0 0.48 1.7E-05 40.1 2.4 22 31-52 14-35 (192)
486 2ce2_X GTPase HRAS; signaling 83.9 0.47 1.6E-05 38.2 2.2 22 31-52 5-26 (166)
487 1z2a_A RAS-related protein RAB 83.8 0.49 1.7E-05 38.3 2.3 21 31-51 7-27 (168)
488 1q57_A DNA primase/helicase; d 83.8 0.47 1.6E-05 46.8 2.6 46 20-66 233-278 (503)
489 3cmw_A Protein RECA, recombina 83.7 0.87 3E-05 51.3 4.8 92 26-128 729-820 (1706)
490 2r62_A Cell division protease 83.7 0.21 7.3E-06 44.6 -0.0 25 29-53 44-68 (268)
491 3g5u_A MCG1178, multidrug resi 83.6 0.37 1.3E-05 53.4 1.8 35 18-52 1048-1082(1284)
492 2ged_A SR-beta, signal recogni 83.5 0.52 1.8E-05 39.4 2.4 22 31-52 50-71 (193)
493 1oyw_A RECQ helicase, ATP-depe 83.4 0.72 2.5E-05 45.8 3.7 59 254-321 65-123 (523)
494 3ly5_A ATP-dependent RNA helic 83.3 2.3 7.9E-05 37.7 6.8 75 253-336 125-206 (262)
495 1u0j_A DNA replication protein 83.2 0.88 3E-05 40.6 3.8 31 21-51 91-126 (267)
496 2wjg_A FEOB, ferrous iron tran 83.1 0.54 1.8E-05 39.1 2.3 21 31-51 9-29 (188)
497 4hlc_A DTMP kinase, thymidylat 83.1 1.3 4.6E-05 37.8 4.9 38 29-68 2-39 (205)
498 1qhl_A Protein (cell division 83.1 0.15 5.2E-06 44.6 -1.2 22 32-53 30-51 (227)
499 1z0j_A RAB-22, RAS-related pro 83.0 0.57 1.9E-05 38.0 2.4 23 31-53 8-30 (170)
500 1ky3_A GTP-binding protein YPT 83.0 0.56 1.9E-05 38.5 2.4 22 31-52 10-31 (182)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=3.5e-55 Score=458.66 Aligned_cols=388 Identities=52% Similarity=0.831 Sum_probs=334.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-CCcEEEEeCchhHHHHHHhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-DGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
+.+++..++.+|....|+.+...+..|++++++||||||||+++|.++....... .+..++++.|++.++.++.+++..
T Consensus 83 ~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 83 YVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp HHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 4566677777777777777888888889999999999999998888876544332 255688889999999999999988
Q ss_pred HhCCccCCeEeEeEeecCCC--------ChhHh-HHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcccc
Q 014085 82 ESGVELGQRVGYSIRFDDRT--------STSTR-IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (431)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 152 (431)
..+..++..+|+........ .+.+. ...++..+.+.+++++|+||+|++....+.++.+++.+...+
T Consensus 163 ~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---- 238 (773)
T 2xau_A 163 EMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---- 238 (773)
T ss_dssp HTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC----
T ss_pred HhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC----
Confidence 88888888888754322211 12233 335556678999999999999998888898889888887665
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecC
Q 014085 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLY 232 (431)
Q Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (431)
++.+++++|||++.+.+++|+++.+++.+.++.++++++|...
T Consensus 239 -------------------------------------~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~ 281 (773)
T 2xau_A 239 -------------------------------------PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPE 281 (773)
T ss_dssp -------------------------------------TTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSS
T ss_pred -------------------------------------CCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecC
Confidence 6789999999999999999999999999999999999999888
Q ss_pred CCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC--CcCCCceEEEEcCCCCCHHHHhhhhCcCC
Q 014085 233 PEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQL--PEASRKLVTVPIFSSLPSEQQMRVFAPAA 310 (431)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~v~~lhg~~~~~~r~~i~~~f~ 310 (431)
+..++....+..+.......+.+++||||+++++|+.++..|.+.+..+ .....++.+..+||+|++++|..+++.|+
T Consensus 282 ~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 282 FQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred CchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 8888888888888877776678999999999999999999998743222 11234889999999999999999999999
Q ss_pred -----CCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeC
Q 014085 311 -----AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYP 385 (431)
Q Consensus 311 -----~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~ 385 (431)
+|..+|||||+++++|+|+|+|++|||+|+.+.+.||+..++..+...|.|.++|+||+|||||.++|.||+||+
T Consensus 362 ~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~ 441 (773)
T 2xau_A 362 ESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 441 (773)
T ss_dssp CCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSC
T ss_pred cccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-hcCcCCCCCceeccCchHHHHHHHHcCCCCCccccCCCCCCC
Q 014085 386 ENEF-DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGFDFMEKPSR 431 (431)
Q Consensus 386 ~~~~-~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~p~~ 431 (431)
++++ +.+.+...|||.+.+|..++|+++.+|+.++..|+|++||++
T Consensus 442 ~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~ 488 (773)
T 2xau_A 442 EEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAP 488 (773)
T ss_dssp HHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCH
T ss_pred HHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcH
Confidence 9998 679999999999999999999999999999999999999963
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-41 Score=336.39 Aligned_cols=310 Identities=17% Similarity=0.210 Sum_probs=222.0
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc------ccCCcEEEEeCchhHHHHHHhHH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~------~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
+.+...+...++++|+++++.+.+|++++++||||||||.++...+..... ...+..++++.|+++++.|+.+.
T Consensus 69 ~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 69 DNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHH
Confidence 344455666799999999999999999999999999999543333322211 12355799999999999999998
Q ss_pred HHHHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 79 VAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
+.++.... +..++...+ .+....+..++..++.. ..+.+++++|+||||
T Consensus 149 ~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-------------- 213 (434)
T 2db3_A 149 ARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-------------- 213 (434)
T ss_dssp HHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH--------------
T ss_pred HHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh--------------
Confidence 87765421 111111110 11123344444444433 236789999999997
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHH-hhhCCCceEEec
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQ 219 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~-~~~~~~~~~~~~ 219 (431)
.|++.+|...+...+..+.. .++.+++++|||++.+ .+. .++.+...+.+.
T Consensus 214 ------------------------~~~~~gf~~~~~~i~~~~~~--~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 267 (434)
T 2db3_A 214 ------------------------RMLDMGFSEDMRRIMTHVTM--RPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIG 267 (434)
T ss_dssp ------------------------HHTSTTTHHHHHHHHHCTTS--CSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEES
T ss_pred ------------------------hhhccCcHHHHHHHHHhcCC--CCCceEEEEeccCCHHHHHHHHHhccCCEEEEec
Confidence 55666555444444443311 2577999999999543 333 566666555554
Q ss_pred Cc---eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC
Q 014085 220 GR---QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS 296 (431)
Q Consensus 220 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~ 296 (431)
.. ...+...+......+.... +.+.+... ..++||||+|+++|+.+++.|.+. ++.+..+||+
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~k~~~----l~~~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~---------~~~~~~lhg~ 333 (434)
T 2db3_A 268 IVGGACSDVKQTIYEVNKYAKRSK----LIEILSEQ-ADGTIVFVETKRGADFLASFLSEK---------EFPTTSIHGD 333 (434)
T ss_dssp STTCCCTTEEEEEEECCGGGHHHH----HHHHHHHC-CTTEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT
T ss_pred cccccccccceEEEEeCcHHHHHH----HHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhC---------CCCEEEEeCC
Confidence 22 1233333333333333332 33333333 345999999999999999999886 8899999999
Q ss_pred CCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC
Q 014085 297 LPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG 376 (431)
Q Consensus 297 ~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~ 376 (431)
+++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+.++|+||+||+||.|
T Consensus 334 ~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d----------~p~~~~~y~qriGR~gR~g 395 (434)
T 2db3_A 334 RLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YD----------MPSKIDDYVHRIGRTGRVG 395 (434)
T ss_dssp SCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSSCTT
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------EC----------CCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999 66 5889999999999999999
Q ss_pred -CcEEEEeeChh
Q 014085 377 -PGKCFRLYPEN 387 (431)
Q Consensus 377 -~G~~~~l~~~~ 387 (431)
.|.|+.|++++
T Consensus 396 ~~G~a~~~~~~~ 407 (434)
T 2db3_A 396 NNGRATSFFDPE 407 (434)
T ss_dssp CCEEEEEEECTT
T ss_pred CCCEEEEEEecc
Confidence 99999999854
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-41 Score=354.52 Aligned_cols=358 Identities=18% Similarity=0.173 Sum_probs=233.9
Q ss_pred hHHHhhccCChHHHHHHHHHH-HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 5 KILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~-~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
+.++..+...++++|.+++.. +.+|++++++||||||||++++.++...... .+.+++++.|++.++.++.+.+..+.
T Consensus 21 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~~~ 99 (715)
T 2va8_A 21 EIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKDWE 99 (715)
T ss_dssp HHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGGGG
T ss_pred HHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHHhh
Confidence 334444445899999999999 7899999999999999998887777654332 24579999999999999988874322
Q ss_pred --CCccCCeEeEeEeec-------CCCChhHhHHHHhc-cc-CCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcccc
Q 014085 84 --GVELGQRVGYSIRFD-------DRTSTSTRIKEALL-DP-YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSA 152 (431)
Q Consensus 84 --~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~-~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 152 (431)
+..++..+|...... ....+.+++...+. .+ .+.+++++|+||+|+..
T Consensus 100 ~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~--------------------- 158 (715)
T 2va8_A 100 LIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN--------------------- 158 (715)
T ss_dssp GGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG---------------------
T ss_pred cCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC---------------------
Confidence 222222222221111 11223333433332 22 37789999999999532
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeEeeec
Q 014085 153 DGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTL 231 (431)
Q Consensus 153 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (431)
+..++..++..+..+ ++.++|+||||+ +.+.+++|++ .+.+..+.+..++...+..
T Consensus 159 -----------------~~~~~~~l~~i~~~~-----~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~ 215 (715)
T 2va8_A 159 -----------------DPERGPVVESVTIRA-----KRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGVIY 215 (715)
T ss_dssp -----------------CTTTHHHHHHHHHHH-----HTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEEEE
T ss_pred -----------------CcccchHHHHHHHhc-----ccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEEEe
Confidence 222222222222222 257999999999 6999999997 3445555555555433211
Q ss_pred CC-----------C---cch--HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhc--CC-----------
Q 014085 232 YP-----------E---PDY--LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQ--LP----------- 282 (431)
Q Consensus 232 ~~-----------~---~~~--~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~--~~----------- 282 (431)
.. . ... .......+.+.. .+++++||||+|+++|+.++..|.+.... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 293 (715)
T 2va8_A 216 PERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQL 293 (715)
T ss_dssp ECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHH
T ss_pred cCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHH
Confidence 10 0 000 122233333333 24689999999999999999999875321 00
Q ss_pred ---c-----------CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecC
Q 014085 283 ---E-----------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDP 348 (431)
Q Consensus 283 ---~-----------~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~ 348 (431)
. ......+..+||+|+.++|..+++.|++|.++|||||+++++|+|+|++++||+. ...||+
T Consensus 294 ~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~ 369 (715)
T 2va8_A 294 DDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNK 369 (715)
T ss_dssp HTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----
T ss_pred HHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----Ceeccc
Confidence 0 0001358889999999999999999999999999999999999999999999983 345774
Q ss_pred CCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChhh-hh----cCcCCCCCceeccCchH------HHHHHHH
Q 014085 349 VKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE-FD----KLEDSTKPEIKRCNLSN------VILQLKA 414 (431)
Q Consensus 349 ~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~-~~----~~~~~~~~~~~~~~l~~------~~l~l~~ 414 (431)
..+.. ..|.|..+|+||+|||||.| +|.||+++++++ +. .+. ...|++.+.++.. .++.+.+
T Consensus 370 ~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l-~~~~e~~~s~l~~~~~l~~~~l~~~~ 445 (715)
T 2va8_A 370 KIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYV-LSDVEPIESKLGSERAFYTFLLGILS 445 (715)
T ss_dssp ------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTT-SSCCCCCCCSCCSHHHHHHHHHHHHH
T ss_pred cCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHH-cCCCCCceecCCchhHHHHHHHHHHh
Confidence 43322 36999999999999999998 899999997665 22 222 3456777776654 6777777
Q ss_pred cCC
Q 014085 415 LGV 417 (431)
Q Consensus 415 ~~~ 417 (431)
+|.
T Consensus 446 ~g~ 448 (715)
T 2va8_A 446 AEG 448 (715)
T ss_dssp HHC
T ss_pred ccc
Confidence 763
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=8.1e-41 Score=350.29 Aligned_cols=352 Identities=18% Similarity=0.180 Sum_probs=241.4
Q ss_pred HHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC-
Q 014085 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG- 84 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~- 84 (431)
.++..+...++++|+++++.+.+|++++++||||||||++++.++..... .+.+++++.|++.++.|+.+.+..+..
T Consensus 17 ~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~ 94 (702)
T 2p6r_A 17 ILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGEKYESFKKWEKI 94 (702)
T ss_dssp HHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTTTTTT
T ss_pred HHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEeCcHHHHHHHHHHHHHHHhc
Confidence 33333444889999999999999999999999999999887777765432 245788889999999999988743222
Q ss_pred -CccCCeEeEeEeec-------CCCChhHhHHHHhcc-c-CCCCCcEEEEecCCcCc-----cchHHHHHHHHHHHHhhc
Q 014085 85 -VELGQRVGYSIRFD-------DRTSTSTRIKEALLD-P-YLSRYSAIIVDEAHERT-----VHTDVLLGLLKKVQNARS 149 (431)
Q Consensus 85 -~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~-~~~~~~~lViDEah~~~-----~~~~~~~~~~~~~~~~~~ 149 (431)
..++..+|...... ....+.+++...+.. + .+++++++|+||+|+.. ...+.++..+++ .+
T Consensus 95 g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~- 170 (702)
T 2p6r_A 95 GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR---MN- 170 (702)
T ss_dssp TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHH---HC-
T ss_pred CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHh---cC-
Confidence 22222222222111 112334444443332 2 37789999999999622 222333332221 11
Q ss_pred cccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeEe
Q 014085 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEIL 228 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (431)
++.++++||||+ +.+.+++|++ .+.+..+.+..++...
T Consensus 171 ----------------------------------------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~ 209 (702)
T 2p6r_A 171 ----------------------------------------KALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEG 209 (702)
T ss_dssp ----------------------------------------TTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEE
T ss_pred ----------------------------------------cCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEE
Confidence 578999999999 6999999997 4456666666666554
Q ss_pred eecCCCcchHH---------HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCC--------------
Q 014085 229 YTLYPEPDYLD---------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEAS-------------- 285 (431)
Q Consensus 229 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~-------------- 285 (431)
+...+...+.. .....+.+.. .+++++||||+|+++|+.++..|.+.+.......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~ 287 (702)
T 2p6r_A 210 VLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEM 287 (702)
T ss_dssp EECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHH
T ss_pred EeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccc
Confidence 33221100000 0222223322 2478899999999999999999987643211000
Q ss_pred -------CceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeee
Q 014085 286 -------RKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 358 (431)
Q Consensus 286 -------~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~ 358 (431)
.+..+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+. ...||. . ..
T Consensus 288 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd~---~----~~ 356 (702)
T 2p6r_A 288 SRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFDG---Y----SK 356 (702)
T ss_dssp HHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEESS---S----EE
T ss_pred cHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeCC---C----CC
Confidence 01347789999999999999999999999999999999999999999999983 456771 1 36
Q ss_pred ecCHHHHHHhhcccCCCC---CcEEEEeeChhhhhcCc---CCCCCceeccCchH------HHHHHHHcCC
Q 014085 359 PISKAQALQRSGRAGREG---PGKCFRLYPENEFDKLE---DSTKPEIKRCNLSN------VILQLKALGV 417 (431)
Q Consensus 359 p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~------~~l~l~~~~~ 417 (431)
|.|..+|+||+|||||.| +|.||.++++.+++.+. ....|++.+.++.. .++.+..+|.
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~ 427 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGY 427 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCC
Confidence 999999999999999998 89999999987754321 23456777776654 5667777763
No 5
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.5e-40 Score=323.65 Aligned_cols=320 Identities=13% Similarity=0.151 Sum_probs=221.0
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
++.+...+...++++|.++++.+..| ++++++||||||||.++...+...... ..+.+++++.|++.++.|+.+.+.
T Consensus 37 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 116 (412)
T 3fht_A 37 LQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE 116 (412)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHH
Confidence 34455566678999999999999987 999999999999996654544433322 234478999999999999988887
Q ss_pred HHhCCccCCeEeEeEee-----------cCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSIRF-----------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
++.....+..+++.... +....+...+..++.. ..+.+++++|+||||.....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~------------- 183 (412)
T 3fht_A 117 QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT------------- 183 (412)
T ss_dssp HHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHST-------------
T ss_pred HHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhc-------------
Confidence 76554333333332211 1122344455544432 23478999999999942111
Q ss_pred hhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHH--H-HhhhCCCceEEecCce-
Q 014085 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--F-SEYFGCAKAVHVQGRQ- 222 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~--l-~~~~~~~~~~~~~~~~- 222 (431)
.++. ..+..+......+.+++++|||++... + ..++.+...+......
T Consensus 184 ------------------------~~~~----~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
T 3fht_A 184 ------------------------QGHQ----DQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 235 (412)
T ss_dssp ------------------------TTTH----HHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS
T ss_pred ------------------------CCcH----HHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc
Confidence 1100 001111111225679999999995543 2 3556655555444322
Q ss_pred --eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHH
Q 014085 223 --FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (431)
Q Consensus 223 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~ 300 (431)
..+...+..... .......+.........+++||||+++++|+.++..|.+. ++.+..+||+|+.+
T Consensus 236 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~ 303 (412)
T 3fht_A 236 TLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVE 303 (412)
T ss_dssp SCTTEEEEEEECSS---HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHH
T ss_pred cccCceEEEEEcCC---hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC---------CCeEEEecCCCCHH
Confidence 122233332222 2233444445554556789999999999999999999987 88899999999999
Q ss_pred HHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcE
Q 014085 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (431)
Q Consensus 301 ~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~ 379 (431)
+|..+++.|++|+.+|||||+++++|+|+|++++||+ ||.+.... ...+..+|+||+||+||.| .|.
T Consensus 304 ~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~----~~~s~~~~~Qr~GR~gR~g~~g~ 371 (412)
T 3fht_A 304 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKD----GNPDNETYLHRIGRTGRFGKRGL 371 (412)
T ss_dssp HHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE--------SSCCBCSS----SSBCHHHHHHHHTTSSCTTCCEE
T ss_pred HHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE--------ECCCCCCC----CCcchheeecccCcccCCCCCce
Confidence 9999999999999999999999999999999999999 55221111 0268899999999999999 899
Q ss_pred EEEeeChhh
Q 014085 380 CFRLYPENE 388 (431)
Q Consensus 380 ~~~l~~~~~ 388 (431)
|+.++++++
T Consensus 372 ~~~~~~~~~ 380 (412)
T 3fht_A 372 AVNMVDSKH 380 (412)
T ss_dssp EEEEECSHH
T ss_pred EEEEEcChh
Confidence 999998553
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-41 Score=332.73 Aligned_cols=314 Identities=16% Similarity=0.247 Sum_probs=207.6
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.+...+...++++|++++..+.+|++++++||||||||.++..++...... ..+.+++++.|++.++.|+.+.+..+
T Consensus 52 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 52 LRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 34445566778999999999999999999999999999997665555544332 23567899999999999999988776
Q ss_pred hCCccCCeEeEeEee---------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 83 SGVELGQRVGYSIRF---------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
... .+..++..... .....+...+...+.. ..+.+++++|+||||.
T Consensus 132 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~---------------- 194 (414)
T 3eiq_A 132 GDY-MGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE---------------- 194 (414)
T ss_dssp GGG-SCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH----------------
T ss_pred hcc-cCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH----------------
Confidence 532 22222211111 1112233333333322 2356799999999993
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH---hhhCCCceEEecCce
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAVHVQGRQ 222 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~---~~~~~~~~~~~~~~~ 222 (431)
+.+.++... +..+.....++.+++++|||++..... .++.+...+......
T Consensus 195 ----------------------~~~~~~~~~----~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (414)
T 3eiq_A 195 ----------------------MLSRGFKDQ----IYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEE 248 (414)
T ss_dssp ----------------------HHHTTTHHH----HHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCC
T ss_pred ----------------------hhccCcHHH----HHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCc
Confidence 222222111 112222223678999999999554432 455554444433222
Q ss_pred e---eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCH
Q 014085 223 F---PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPS 299 (431)
Q Consensus 223 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~ 299 (431)
. .+...+......+. ....+.........+++||||+++++|+.+++.|.+. ++.+..+||++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~h~~~~~ 316 (414)
T 3eiq_A 249 LTLEGIRQFYINVEREEW---KLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR---------DFTVSAMHGDMDQ 316 (414)
T ss_dssp CCTTSCCEEEEECSSSTT---HHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT---------TCCCEEC---CHH
T ss_pred cCCCCceEEEEEeChHHh---HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc---------CCeEEEecCCCCH
Confidence 1 22233333333332 2333444455556789999999999999999999886 8899999999999
Q ss_pred HHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-Cc
Q 014085 300 EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG 378 (431)
Q Consensus 300 ~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G 378 (431)
++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|
T Consensus 317 ~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g 378 (414)
T 3eiq_A 317 KERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------YD----------LPTNRENYIHRIGRGGRFGRKG 378 (414)
T ss_dssp HHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE--------SS----------CCSSTHHHHHHSCCC-------
T ss_pred HHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE--------eC----------CCCCHHHhhhhcCcccCCCCCc
Confidence 99999999999999999999999999999999999999 55 4888999999999999998 89
Q ss_pred EEEEeeChhhhh
Q 014085 379 KCFRLYPENEFD 390 (431)
Q Consensus 379 ~~~~l~~~~~~~ 390 (431)
.|+.++++++..
T Consensus 379 ~~~~~~~~~~~~ 390 (414)
T 3eiq_A 379 VAINMVTEEDKR 390 (414)
T ss_dssp CEEEEECSTHHH
T ss_pred eEEEEEcHHHHH
Confidence 999999977543
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=326.21 Aligned_cols=318 Identities=17% Similarity=0.195 Sum_probs=215.2
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-------------------ccCCcEEEE
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-------------------CRDGKLIGV 64 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-------------------~~~~~~v~v 64 (431)
.+.+...+...++++|+++++.+..|++++++||||||||.++...+..... ...+..+++
T Consensus 27 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 106 (417)
T 2i4i_A 27 MGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLV 106 (417)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEE
Confidence 3455556677899999999999999999999999999999543333322211 111246899
Q ss_pred eCchhHHHHHHhHHHHHHhCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCC
Q 014085 65 TQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (431)
Q Consensus 65 ~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah 128 (431)
+.|++.++.|+.+.+.++.... +..++..... +....+...+...+.. ..+.+++++|+||||
T Consensus 107 l~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah 185 (417)
T 2i4i_A 107 LAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEAD 185 (417)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHH
T ss_pred ECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChh
Confidence 9999999999999887765422 2222211110 1112334444443333 236789999999998
Q ss_pred cCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HH
Q 014085 129 ERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GF 206 (431)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l 206 (431)
. +++.++...+...+...........+++++|||++.. .+
T Consensus 186 ~--------------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~ 227 (417)
T 2i4i_A 186 R--------------------------------------MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQML 227 (417)
T ss_dssp H--------------------------------------HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHH
T ss_pred H--------------------------------------hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHH
Confidence 3 2222221111111111111111367899999999443 33
Q ss_pred H-hhhCCCceEEecCce---eeeeEeeecCCCcchHHHHHHHHHHHhhc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcC
Q 014085 207 S-EYFGCAKAVHVQGRQ---FPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQL 281 (431)
Q Consensus 207 ~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~ 281 (431)
. .++++...+.+.... ..+...+......+.... +.+.... ...+++||||+|+++++.+++.|.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---- 299 (417)
T 2i4i_A 228 ARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSF----LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---- 299 (417)
T ss_dssp HHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHH----HHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT----
T ss_pred HHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHH----HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC----
Confidence 3 566655444443221 122333333333332222 2223222 34678999999999999999999886
Q ss_pred CcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecC
Q 014085 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (431)
Q Consensus 282 ~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s 361 (431)
++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+
T Consensus 300 -----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~----------~p~s 356 (417)
T 2i4i_A 300 -----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSD 356 (417)
T ss_dssp -----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SS----------CCSS
T ss_pred -----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------Ec----------CCCC
Confidence 889999999999999999999999999999999999999999999999999 55 4889
Q ss_pred HHHHHHhhcccCCCC-CcEEEEeeChhhhhc
Q 014085 362 KAQALQRSGRAGREG-PGKCFRLYPENEFDK 391 (431)
Q Consensus 362 ~~~~~qr~GR~gR~~-~G~~~~l~~~~~~~~ 391 (431)
..+|+||+||+||.| .|.|+.++++++...
T Consensus 357 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 357 IEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp HHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred HHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 999999999999999 899999999876543
No 8
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-40 Score=327.10 Aligned_cols=312 Identities=14% Similarity=0.253 Sum_probs=218.0
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
+.+...+...++++|+++++.+.+|+++++++|||||||.++...+..... ...+.+++++.|++.++.|+.+.+..+.
T Consensus 50 ~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 50 RGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 334444555699999999999999999999999999999665555544332 2235679999999999999999887765
Q ss_pred CCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 84 GVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 84 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
.. .+..++..... .....+...+...+.. ..+.+++++|+||||.
T Consensus 130 ~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~------------------ 190 (410)
T 2j0s_A 130 DY-MNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE------------------ 190 (410)
T ss_dssp TT-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH------------------
T ss_pred cc-CCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH------------------
Confidence 32 22222221110 1112233333333332 2356799999999983
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH---hhhCCCceEEecCce--
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS---EYFGCAKAVHVQGRQ-- 222 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~---~~~~~~~~~~~~~~~-- 222 (431)
+++.++. ..+..+.....++.+++++|||++.+... .++.+...+.+....
T Consensus 191 --------------------~~~~~~~----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (410)
T 2j0s_A 191 --------------------MLNKGFK----EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT 246 (410)
T ss_dssp --------------------HTSTTTH----HHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCS
T ss_pred --------------------HHhhhhH----HHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcccc
Confidence 2332222 11222222333677999999999654332 455554444333221
Q ss_pred -eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHH
Q 014085 223 -FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (431)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~ 301 (431)
..+...+......+.... .+.........+++||||+++++++.+++.|.+. ++.+..+||++++++
T Consensus 247 ~~~~~~~~~~~~~~~~k~~---~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~ 314 (410)
T 2j0s_A 247 LEGIKQFFVAVEREEWKFD---TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA---------NFTVSSMHGDMPQKE 314 (410)
T ss_dssp CTTEEEEEEEESSTTHHHH---HHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHH
T ss_pred CCCceEEEEEeCcHHhHHH---HHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC---------CCceEEeeCCCCHHH
Confidence 122333333333332222 2333333344678999999999999999999886 888999999999999
Q ss_pred HhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEE
Q 014085 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (431)
Q Consensus 302 r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~ 380 (431)
|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+...|+||+||+||.| .|.|
T Consensus 315 r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~ 376 (410)
T 2j0s_A 315 RESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN--------YD----------LPNNRELYIHRIGRSGRYGRKGVA 376 (410)
T ss_dssp HHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred HHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE--------EC----------CCCCHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999999999999999999 55 5889999999999999998 9999
Q ss_pred EEeeChhhh
Q 014085 381 FRLYPENEF 389 (431)
Q Consensus 381 ~~l~~~~~~ 389 (431)
+.++++++.
T Consensus 377 ~~~~~~~~~ 385 (410)
T 2j0s_A 377 INFVKNDDI 385 (410)
T ss_dssp EEEEEGGGH
T ss_pred EEEecHHHH
Confidence 999988764
No 9
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.6e-39 Score=329.72 Aligned_cols=308 Identities=18% Similarity=0.172 Sum_probs=214.0
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCe
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (431)
+...++|+|+++++.+.+|+++++++|||+|||.+....+... ...++|+.|++.++.|+.+.+... +......
T Consensus 41 g~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----~g~~lVisP~~~L~~q~~~~l~~~-gi~~~~l 114 (591)
T 2v1x_A 41 KLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----DGFTLVICPLISLMEDQLMVLKQL-GISATML 114 (591)
T ss_dssp CCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----SSEEEEECSCHHHHHHHHHHHHHH-TCCEEEC
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHhc-CCcEEEE
Confidence 3347889999999999999999999999999995433333332 236888899999999998888765 3221111
Q ss_pred EeEeE----------------eecCCCChhHhHH------HHhc-ccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 91 VGYSI----------------RFDDRTSTSTRIK------EALL-DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 91 ~~~~~----------------~~~~~~~~~~~~~------~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
.+... .......+++++. ..+. ...+.+++++|+||||
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH------------------- 175 (591)
T 2v1x_A 115 NASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVH------------------- 175 (591)
T ss_dssp CSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGG-------------------
T ss_pred eCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcc-------------------
Confidence 11000 0001111222221 1111 1225679999999998
Q ss_pred hccccCCCCCCCCCCCCccccccCC--CCCCCcccccccccCCCCCceEEEEcCCCChH---HHHhhhCCCceEEecCce
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRG--NDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQ 222 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~---~l~~~~~~~~~~~~~~~~ 222 (431)
.+.+++ |.+.+.. +..+. ...++.+++++|||++.. .+.++++......+....
T Consensus 176 -------------------~is~~g~dfr~~~~~-l~~l~-~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~ 234 (591)
T 2v1x_A 176 -------------------CCSQWGHDFRPDYKA-LGILK-RQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF 234 (591)
T ss_dssp -------------------GGSTTCTTCCGGGGG-GGHHH-HHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC
T ss_pred -------------------cccccccccHHHHHH-HHHHH-HhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC
Confidence 445544 2222221 11111 122678999999999664 445677654333333222
Q ss_pred eeeeEeeecCCCcchHHHHHHHHHHHhhc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHH
Q 014085 223 FPVEILYTLYPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (431)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~ 301 (431)
......+...............+.+.... .+++++||||+|+++|+.++..|.+. ++.+..+||+|++++
T Consensus 235 ~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~ 305 (591)
T 2v1x_A 235 NRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL---------GIHAGAYHANLEPED 305 (591)
T ss_dssp CCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHH
T ss_pred CCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHH
Confidence 22222332222222333444455555432 35678999999999999999999986 899999999999999
Q ss_pred HhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEE
Q 014085 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (431)
Q Consensus 302 r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~ 380 (431)
|..+++.|++|+.+|||||+++++|+|+|+|++||+ || .|.|.++|+||+|||||.| +|.|
T Consensus 306 R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~----------~p~s~~~y~Qr~GRaGR~G~~g~~ 367 (591)
T 2v1x_A 306 KTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HS----------MSKSMENYYQESGRAGRDDMKADC 367 (591)
T ss_dssp HHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SS----------CCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred HHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eC----------CCCCHHHHHHHhccCCcCCCCceE
Confidence 999999999999999999999999999999999999 55 5889999999999999999 9999
Q ss_pred EEeeChhhhhc
Q 014085 381 FRLYPENEFDK 391 (431)
Q Consensus 381 ~~l~~~~~~~~ 391 (431)
+.+|++.+...
T Consensus 368 i~l~~~~D~~~ 378 (591)
T 2v1x_A 368 ILYYGFGDIFR 378 (591)
T ss_dssp EEEECHHHHHH
T ss_pred EEEEChHHHHH
Confidence 99999887655
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.6e-39 Score=315.24 Aligned_cols=319 Identities=16% Similarity=0.181 Sum_probs=219.1
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
.++.+...+...++++|.++++.+..| +++++++|||||||.++..++...... ..+.+++++.|++.++.|+.+.+
T Consensus 16 l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 95 (395)
T 3pey_A 16 LLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVV 95 (395)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHH
Confidence 345555667778999999999999998 899999999999996655555444322 23557899999999999999988
Q ss_pred HHHhCCccCCeEeEeEe----------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 80 AEESGVELGQRVGYSIR----------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 80 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
.++.... +..++.... .+....+...+...+.. ..+.+++++|+||||.......+. ..+...
T Consensus 96 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~-~~~~~~--- 170 (395)
T 3pey_A 96 QEMGKFT-KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLG-DQCIRV--- 170 (395)
T ss_dssp HHHTTTS-CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHH-HHHHHH---
T ss_pred HHHhccc-CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccH-HHHHHH---
Confidence 7765322 122211110 11122334444444433 246789999999999532211111 111111
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh--HHHH-hhhCCCceEEecCcee-
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQGRQF- 223 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~l~-~~~~~~~~~~~~~~~~- 223 (431)
......+.+++++|||++. ..+. .++.+...+.......
T Consensus 171 -------------------------------------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (395)
T 3pey_A 171 -------------------------------------KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN 213 (395)
T ss_dssp -------------------------------------HHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS
T ss_pred -------------------------------------HHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc
Confidence 1111256799999999954 3333 4444444444333221
Q ss_pred --eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHH
Q 014085 224 --PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQ 301 (431)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~ 301 (431)
.....+..... .......+.......+.+++||||+++++|+.++..|.+. ++.+..+||+++.++
T Consensus 214 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~ 281 (395)
T 3pey_A 214 VDAIKQLYMDCKN---EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE---------GHEVSILHGDLQTQE 281 (395)
T ss_dssp CTTEEEEEEECSS---HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT---------TCCCEEECTTSCHHH
T ss_pred cccccEEEEEcCc---hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc---------CCcEEEeCCCCCHHH
Confidence 12222222222 2233334444555556789999999999999999999886 888999999999999
Q ss_pred HhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEE
Q 014085 302 QMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKC 380 (431)
Q Consensus 302 r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~ 380 (431)
|..+++.|++|+.+|||||+++++|+|+|++++||+ ||.+.... .+.+..+|+||+||+||.| .|.|
T Consensus 282 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~--------~~~p~~~~----~~~s~~~~~Qr~GR~gR~g~~g~~ 349 (395)
T 3pey_A 282 RDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN--------YDLPTLAN----GQADPATYIHRIGRTGRFGRKGVA 349 (395)
T ss_dssp HHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE--------SSCCBCTT----SSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred HHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE--------cCCCCCCc----CCCCHHHhhHhccccccCCCCceE
Confidence 999999999999999999999999999999999999 55321111 1349999999999999999 8999
Q ss_pred EEeeChh
Q 014085 381 FRLYPEN 387 (431)
Q Consensus 381 ~~l~~~~ 387 (431)
+.+++++
T Consensus 350 ~~~~~~~ 356 (395)
T 3pey_A 350 ISFVHDK 356 (395)
T ss_dssp EEEECSH
T ss_pred EEEEech
Confidence 9999754
No 11
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.3e-39 Score=314.54 Aligned_cols=313 Identities=15% Similarity=0.195 Sum_probs=219.4
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.+...+...++++|.++++.+..|+++++++|||+|||.++..++..... ...+.+++++.|++.++.|+.+.+.++
T Consensus 20 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 20 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp HHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 3444445555699999999999999999999999999999655444443322 223457899999999999999888877
Q ss_pred hCCccCCeEeEeEee---------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 83 SGVELGQRVGYSIRF---------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
.....+..++...+. +....+.+.+...+.. ..+.+++++|+||||....+...... +....
T Consensus 100 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~-~~~~~ 178 (391)
T 1xti_A 100 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRD-VQEIF 178 (391)
T ss_dssp TTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHH-HHHHH
T ss_pred HhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHH-HHHHH
Confidence 654323333222110 1112233333333322 23678999999999964433222211 11111
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh--HH-HHhhhCCCceEEecCce
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RG-FSEYFGCAKAVHVQGRQ 222 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~-l~~~~~~~~~~~~~~~~ 222 (431)
. ......+++++|||++. .. +..++.+...+......
T Consensus 179 ~----------------------------------------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (391)
T 1xti_A 179 R----------------------------------------MTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET 218 (391)
T ss_dssp H----------------------------------------TSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC
T ss_pred h----------------------------------------hCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc
Confidence 1 11156789999999933 33 33566655545444321
Q ss_pred ----eeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCC
Q 014085 223 ----FPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLP 298 (431)
Q Consensus 223 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~ 298 (431)
......+......+... .+.......+.+++||||+++++++.+++.|.+. ++.+..+||+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~ 285 (391)
T 1xti_A 219 KLTLHGLQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMP 285 (391)
T ss_dssp CCCCTTCEEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSC
T ss_pred ccCcccceEEEEEcCchhHHH----HHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC---------CCcEEEEeCCCC
Confidence 12333333333333222 2333333346789999999999999999999886 888999999999
Q ss_pred HHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-C
Q 014085 299 SEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-P 377 (431)
Q Consensus 299 ~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~ 377 (431)
.++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +
T Consensus 286 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~~R~g~~ 347 (391)
T 1xti_A 286 QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTK 347 (391)
T ss_dssp HHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE--------SS----------CCSSHHHHHHHHCBCSSSCCC
T ss_pred HHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHhcccccCCCCc
Confidence 999999999999999999999999999999999999999 55 5889999999999999999 9
Q ss_pred cEEEEeeChhh
Q 014085 378 GKCFRLYPENE 388 (431)
Q Consensus 378 G~~~~l~~~~~ 388 (431)
|.|+.++++++
T Consensus 348 g~~~~~~~~~~ 358 (391)
T 1xti_A 348 GLAITFVSDEN 358 (391)
T ss_dssp CEEEEEECSHH
T ss_pred eEEEEEEcccc
Confidence 99999998653
No 12
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.1e-39 Score=312.54 Aligned_cols=312 Identities=18% Similarity=0.255 Sum_probs=221.5
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCC-CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKN-DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g-~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.++..+...++++|.++++.+.+| +++++++|||||||.++..++........+.+++++.|++.++.|+.+.+..+
T Consensus 18 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 18 LNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 44555666678999999999999988 69999999999999766555555444334667899999999999999998887
Q ss_pred hCCccCCeEeEeEee-------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 83 SGVELGQRVGYSIRF-------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
.+.. +..++..... +....+...+...+.. ..+.+++++|+||||.....
T Consensus 98 ~~~~-~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~-------------- 162 (367)
T 1hv8_A 98 KGNK-NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM-------------- 162 (367)
T ss_dssp HCSS-CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT--------------
T ss_pred hCCC-CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh--------------
Confidence 6542 1112111100 0111223333333322 23678999999999942211
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHH---HhhhCCCceEEecCceee
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGF---SEYFGCAKAVHVQGRQFP 224 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l---~~~~~~~~~~~~~~~~~~ 224 (431)
++ ...+..+.....++.+++++|||++.... ..++++...+..... ..
T Consensus 163 ------------------------~~----~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~ 213 (367)
T 1hv8_A 163 ------------------------GF----IKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-AN 213 (367)
T ss_dssp ------------------------TT----HHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-SS
T ss_pred ------------------------ch----HHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-CC
Confidence 11 01111111122256799999999965433 356665544443322 23
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~ 304 (431)
+...+......+.... +..... ...+++||||+++++++.+++.|.+. ++.+..+||+++.++|..
T Consensus 214 ~~~~~~~~~~~~~~~~----l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~ 279 (367)
T 1hv8_A 214 IEQSYVEVNENERFEA----LCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI---------GFKAGAIHGDLSQSQREK 279 (367)
T ss_dssp SEEEEEECCGGGHHHH----HHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECSSSCHHHHHH
T ss_pred ceEEEEEeChHHHHHH----HHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc---------CCCeEEeeCCCCHHHHHH
Confidence 3444444344343333 223322 45778999999999999999999886 889999999999999999
Q ss_pred hhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 305 i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.+
T Consensus 280 ~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 341 (367)
T 1hv8_A 280 VIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YH----------LPQNPESYMHRIGRTGRAGKKGKAISI 341 (367)
T ss_dssp HHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SS----------CCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ec----------CCCCHHHhhhcccccccCCCccEEEEE
Confidence 999999999999999999999999999999999 54 4889999999999999999 9999999
Q ss_pred eChhhhhc
Q 014085 384 YPENEFDK 391 (431)
Q Consensus 384 ~~~~~~~~ 391 (431)
+++++++.
T Consensus 342 ~~~~~~~~ 349 (367)
T 1hv8_A 342 INRREYKK 349 (367)
T ss_dssp ECTTSHHH
T ss_pred EcHHHHHH
Confidence 98876543
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3e-39 Score=330.77 Aligned_cols=323 Identities=14% Similarity=0.176 Sum_probs=214.7
Q ss_pred hHHHhhccCChHHHHHHHHHHHh--CCCEEEEEcCCCCChhccHhHHhhhcccc-----cCCcEEEEeCchhHHHHHHhH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~--~g~~~vi~apTGsGKT~~~~~~~~~~~~~-----~~~~~v~v~~p~~~l~~~~~~ 77 (431)
+.+...+...++++|.++++.+. .|++++++||||||||.++..++...... ..+.+++++.|++.++.|+.+
T Consensus 85 ~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~ 164 (563)
T 3i5x_A 85 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEA 164 (563)
T ss_dssp HHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHH
Confidence 33444455679999999999999 67899999999999995443333322211 123478999999999999999
Q ss_pred HHHHHhCCcc----CCeEeEeE--------------eecCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHH
Q 014085 78 RVAEESGVEL----GQRVGYSI--------------RFDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDV 136 (431)
Q Consensus 78 ~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~ 136 (431)
.+..+..... ........ ..+..+.+..++...+.. ..+.+++++|+||||+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~----- 239 (563)
T 3i5x_A 165 EVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLL----- 239 (563)
T ss_dssp HHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHT-----
T ss_pred HHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHh-----
Confidence 8877543211 11111100 001112233333333222 247789999999999432
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccc---cCCCCCceEEEEcCCCCh--HHHHh-hh
Q 014085 137 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ---GRKFAPLKLIIMSASLDA--RGFSE-YF 210 (431)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~lSAT~~~--~~l~~-~~ 210 (431)
+.+|...+...+..+. ....++.+++++|||++. +.+.. ++
T Consensus 240 ---------------------------------~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~ 286 (563)
T 3i5x_A 240 ---------------------------------EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM 286 (563)
T ss_dssp ---------------------------------STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC
T ss_pred ---------------------------------ccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhc
Confidence 2222222222211111 112257799999999954 44443 34
Q ss_pred CCCceEEecCce-------eeeeEeee-cCCCcchHHHHHHHHHHHhh-cCCCCcEEEEcCCHHHHHHHHHHHHHHHhcC
Q 014085 211 GCAKAVHVQGRQ-------FPVEILYT-LYPEPDYLDATLITIFQVHL-DEAPGDILVFLTGQEEIESVERLVQERLLQL 281 (431)
Q Consensus 211 ~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~ 281 (431)
.+...+.+.... ..+...+. ...........+..+..... ..+.+++||||+|++.|+.++..|.+....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~- 365 (563)
T 3i5x_A 287 NKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK- 365 (563)
T ss_dssp CSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-
T ss_pred CCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-
Confidence 444333332110 11111111 11122223333333433333 255778999999999999999999887542
Q ss_pred CcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecC
Q 014085 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (431)
Q Consensus 282 ~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s 361 (431)
++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+
T Consensus 366 -----~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~----------~p~s 422 (563)
T 3i5x_A 366 -----DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG----------VPSE 422 (563)
T ss_dssp -----TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES----------CCSS
T ss_pred -----CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------EC----------CCCc
Confidence 778999999999999999999999999999999999999999999999999 66 5889
Q ss_pred HHHHHHhhcccCCCC-CcEEEEeeChhhh
Q 014085 362 KAQALQRSGRAGREG-PGKCFRLYPENEF 389 (431)
Q Consensus 362 ~~~~~qr~GR~gR~~-~G~~~~l~~~~~~ 389 (431)
..+|+||+|||||.| .|.|+.++++.+.
T Consensus 423 ~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 423 LANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp TTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred hhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 999999999999999 9999999987754
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=331.77 Aligned_cols=320 Identities=13% Similarity=0.154 Sum_probs=108.4
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
++.+...+...++++|.++++.+..| ++++++||||||||.++...+...... ..+.+++++.|++.++.|+.+.+.
T Consensus 104 ~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~ 183 (479)
T 3fmp_B 104 LQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE 183 (479)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHH
Confidence 34445566678999999999999987 999999999999996655555444332 234478999999999999988877
Q ss_pred HHhCCccCCeEeEeEee-----------cCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSIRF-----------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
.+.....+..+++.... ...+.+..++..++.. ..+.+++++|+||||......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~------------ 251 (479)
T 3fmp_B 184 QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ------------ 251 (479)
T ss_dssp HHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTST------------
T ss_pred HHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcC------------
Confidence 76554323333322111 1123344555555433 224789999999999422111
Q ss_pred hhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHH--HH-hhhCCCceEEecCcee
Q 014085 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG--FS-EYFGCAKAVHVQGRQF 223 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~--l~-~~~~~~~~~~~~~~~~ 223 (431)
++. ..+..+......+.+++++|||++.+. +. .++.+...+.+.....
T Consensus 252 -------------------------~~~----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~ 302 (479)
T 3fmp_B 252 -------------------------GHQ----DQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 302 (479)
T ss_dssp -------------------------THH----HHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----
T ss_pred -------------------------CcH----HHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc
Confidence 000 001111112225689999999995543 33 4555555555544322
Q ss_pred ee---eEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHH
Q 014085 224 PV---EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (431)
Q Consensus 224 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~ 300 (431)
.. ...+..... .......+...+.....+++||||+++++|+.++..|.+. ++.+..+||++++.
T Consensus 303 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~ 370 (479)
T 3fmp_B 303 TLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE---------GHQVALLSGEMMVE 370 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCCceEEEEEeCC---HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC---------CccEEEecCCCCHH
Confidence 22 111111111 1122233344444445678999999999999999999887 88999999999999
Q ss_pred HHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcE
Q 014085 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (431)
Q Consensus 301 ~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~ 379 (431)
+|..+++.|++|+.+|||||+++++|+|+|++++||+ ||.+..... ..+..+|+||+|||||.| .|.
T Consensus 371 ~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~--------~d~p~~~~~----~~s~~~~~Qr~GRagR~g~~G~ 438 (479)
T 3fmp_B 371 QRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGL 438 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE--------ecCCCCCcc----CCCHHHHHHHhcccccCCCCce
Confidence 9999999999999999999999999999999999999 553221110 257788999999999999 899
Q ss_pred EEEeeChhh
Q 014085 380 CFRLYPENE 388 (431)
Q Consensus 380 ~~~l~~~~~ 388 (431)
|+.++++.+
T Consensus 439 ~i~~~~~~~ 447 (479)
T 3fmp_B 439 AVNMVDSKH 447 (479)
T ss_dssp ---------
T ss_pred EEEEEcCcc
Confidence 999998654
No 15
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.3e-39 Score=329.49 Aligned_cols=323 Identities=14% Similarity=0.184 Sum_probs=215.1
Q ss_pred hHHHhhccCChHHHHHHHHHHHh--CCCEEEEEcCCCCChhccHhHHhhhcccc-----cCCcEEEEeCchhHHHHHHhH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFHAGFC-----RDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~--~g~~~vi~apTGsGKT~~~~~~~~~~~~~-----~~~~~v~v~~p~~~l~~~~~~ 77 (431)
+.+...+...++++|+++++.+. .|++++++||||||||.++..++...... ..+..++++.|++.++.|+.+
T Consensus 34 ~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~ 113 (579)
T 3sqw_A 34 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEA 113 (579)
T ss_dssp HHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHH
Confidence 34444555569999999999999 78899999999999995443333322111 124478999999999999999
Q ss_pred HHHHHhCCc----cCCeEeEeE--------------eecCCCChhHhHHHHhc---ccCCCCCcEEEEecCCcCccchHH
Q 014085 78 RVAEESGVE----LGQRVGYSI--------------RFDDRTSTSTRIKEALL---DPYLSRYSAIIVDEAHERTVHTDV 136 (431)
Q Consensus 78 ~~~~~~~~~----~~~~~~~~~--------------~~~~~~~~~~~~~~~~~---~~~~~~~~~lViDEah~~~~~~~~ 136 (431)
.+..+.... ......... ..+..+.++.++...+. ...+..++++|+||||+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~----- 188 (579)
T 3sqw_A 114 EVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLL----- 188 (579)
T ss_dssp HHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHT-----
T ss_pred HHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhh-----
Confidence 887764211 111111100 01112223333333322 2357889999999999532
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccc---cCCCCCceEEEEcCCCCh--HHHH-hhh
Q 014085 137 LLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ---GRKFAPLKLIIMSASLDA--RGFS-EYF 210 (431)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~lSAT~~~--~~l~-~~~ 210 (431)
+.+|...+..++..+. ....++.+++++|||++. +.+. .++
T Consensus 189 ---------------------------------~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l 235 (579)
T 3sqw_A 189 ---------------------------------EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIM 235 (579)
T ss_dssp ---------------------------------STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTC
T ss_pred ---------------------------------cCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHc
Confidence 2222222211111111 112246799999999954 3344 344
Q ss_pred CCCceEEecCce-------eeeeEeeec-CCCcchHHHHHHHHHHHhhc-CCCCcEEEEcCCHHHHHHHHHHHHHHHhcC
Q 014085 211 GCAKAVHVQGRQ-------FPVEILYTL-YPEPDYLDATLITIFQVHLD-EAPGDILVFLTGQEEIESVERLVQERLLQL 281 (431)
Q Consensus 211 ~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~ 281 (431)
.....+.+.... ..+...+.. ..........+..+...... .+..++||||+|+++|+.++..|.+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~- 314 (579)
T 3sqw_A 236 NKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK- 314 (579)
T ss_dssp CSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-
T ss_pred CCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-
Confidence 444333332110 111111111 11122233333334433332 45678999999999999999999887542
Q ss_pred CcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecC
Q 014085 282 PEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPIS 361 (431)
Q Consensus 282 ~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s 361 (431)
++.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+
T Consensus 315 -----~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~----------~p~s 371 (579)
T 3sqw_A 315 -----DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IG----------VPSE 371 (579)
T ss_dssp -----TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ES----------CCSS
T ss_pred -----CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cC----------CCCC
Confidence 778999999999999999999999999999999999999999999999999 66 5889
Q ss_pred HHHHHHhhcccCCCC-CcEEEEeeChhhh
Q 014085 362 KAQALQRSGRAGREG-PGKCFRLYPENEF 389 (431)
Q Consensus 362 ~~~~~qr~GR~gR~~-~G~~~~l~~~~~~ 389 (431)
...|+||+|||||.| .|.|+.++++++.
T Consensus 372 ~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 372 LANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp TTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred HHHhhhhccccccCCCCceEEEEEcccHH
Confidence 999999999999999 9999999987754
No 16
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.2e-40 Score=344.51 Aligned_cols=327 Identities=16% Similarity=0.165 Sum_probs=224.9
Q ss_pred hhHHHhhccCChHHHHHHHHHH-HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEE-VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~-~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.++..+...++++|.+++.. +.+|++++++||||||||++++.++....... +.+++++.|++.++.|+.+++..+
T Consensus 13 ~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 13 KSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-GGKAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp HHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-CSEEEEECSSGGGHHHHHHHTGGG
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHHHHHHH
Confidence 4455555555899999999998 88999999999999999987766666443322 457899999999999999988533
Q ss_pred hCCccCCeEeEeEeec-----------CCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhc
Q 014085 83 SGVELGQRVGYSIRFD-----------DRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARS 149 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~ 149 (431)
.. .+..++...+.. ....+.+++...+.. ..+.+++++|+||+|
T Consensus 92 ~~--~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H--------------------- 148 (720)
T 2zj8_A 92 EK--IGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH--------------------- 148 (720)
T ss_dssp GG--GTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG---------------------
T ss_pred Hh--cCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc---------------------
Confidence 22 133333222111 111233344333322 236789999999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeEe
Q 014085 150 KSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEIL 228 (431)
Q Consensus 150 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (431)
++.+..++..++..+..+. .+.++|++|||+ +.+.+++|++. +.+..+.+..++...
T Consensus 149 -----------------~l~~~~r~~~~~~ll~~l~----~~~~ii~lSATl~n~~~~~~~l~~-~~~~~~~rp~~l~~~ 206 (720)
T 2zj8_A 149 -----------------LIGSRDRGATLEVILAHML----GKAQIIGLSATIGNPEELAEWLNA-ELIVSDWRPVKLRRG 206 (720)
T ss_dssp -----------------GGGCTTTHHHHHHHHHHHB----TTBEEEEEECCCSCHHHHHHHTTE-EEEECCCCSSEEEEE
T ss_pred -----------------ccCCCcccHHHHHHHHHhh----cCCeEEEEcCCcCCHHHHHHHhCC-cccCCCCCCCcceEE
Confidence 3344444444443343333 267999999999 89999999963 334444444554433
Q ss_pred eecCCCcch-------HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc------------------
Q 014085 229 YTLYPEPDY-------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------------------ 283 (431)
Q Consensus 229 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~------------------ 283 (431)
+...+...+ .......+.+.. .+++++||||+|+++|+.++..|.+.......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 284 (720)
T 2zj8_A 207 VFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENP 284 (720)
T ss_dssp EEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCH
T ss_pred EEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhccc
Confidence 221110000 011112222222 23689999999999999999999876432100
Q ss_pred ------CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeee
Q 014085 284 ------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV 357 (431)
Q Consensus 284 ------~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~ 357 (431)
......+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||+.. ..|| ..+ .
T Consensus 285 ~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~ 354 (720)
T 2zj8_A 285 TNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----M 354 (720)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----C
T ss_pred chHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----C
Confidence 00012488999999999999999999999999999999999999999999999833 4466 111 1
Q ss_pred eecCHHHHHHhhcccCCCC---CcEEEEeeChhh
Q 014085 358 VPISKAQALQRSGRAGREG---PGKCFRLYPENE 388 (431)
Q Consensus 358 ~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~ 388 (431)
.|.+..+|+||+|||||.| +|.||.++++++
T Consensus 355 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 355 ERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred ccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 5899999999999999988 799999998765
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.5e-39 Score=314.39 Aligned_cols=311 Identities=14% Similarity=0.145 Sum_probs=215.5
Q ss_pred HHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
.+...+...++++|+++++.+..|+++++++|||||||.++...+...... ..+.+++++.|++.++.|+.+.+..+..
T Consensus 35 ~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (400)
T 1s2m_A 35 GIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK 114 (400)
T ss_dssp HHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc
Confidence 334445556999999999999999999999999999996555544443322 2345788899999999999988877654
Q ss_pred CccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 85 VELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 85 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
.. +..++..... +....+...+...+.. ..+.+++++|+||||..... .+...+..+..
T Consensus 115 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~--~~~~~~~~i~~-- 189 (400)
T 1s2m_A 115 HC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR--DFKTIIEQILS-- 189 (400)
T ss_dssp TT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH--HHHHHHHHHHT--
T ss_pred cc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh--chHHHHHHHHH--
Confidence 32 2222221110 1112233333333332 34678999999999942221 12222222211
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHH---HHhhhCCCceEEecCce--e
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQ--F 223 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~---l~~~~~~~~~~~~~~~~--~ 223 (431)
...+..+++++|||++... +..++.....+...... .
T Consensus 190 --------------------------------------~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (400)
T 1s2m_A 190 --------------------------------------FLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLK 231 (400)
T ss_dssp --------------------------------------TSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCT
T ss_pred --------------------------------------hCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccC
Confidence 1125678999999995433 23455444332222211 1
Q ss_pred eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
.....+......... ..+.........+++||||+++++++.+++.|.+. ++.+..+||+++.++|.
T Consensus 232 ~~~~~~~~~~~~~k~----~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~ 298 (400)
T 1s2m_A 232 GITQYYAFVEERQKL----HCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL---------GYSCYYSHARMKQQERN 298 (400)
T ss_dssp TEEEEEEECCGGGHH----HHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHH
T ss_pred CceeEEEEechhhHH----HHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc---------CCCeEEecCCCCHHHHH
Confidence 223333322222222 22233333345679999999999999999999987 88999999999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~ 382 (431)
.+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.
T Consensus 299 ~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~ 360 (400)
T 1s2m_A 299 KVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FD----------FPKTAETYLHRIGRSGRFGHLGLAIN 360 (400)
T ss_dssp HHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHCBSSCTTCCEEEEE
T ss_pred HHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE--------eC----------CCCCHHHHHHhcchhcCCCCCceEEE
Confidence 9999999999999999999999999999999999 55 4889999999999999998 999999
Q ss_pred eeChhhhh
Q 014085 383 LYPENEFD 390 (431)
Q Consensus 383 l~~~~~~~ 390 (431)
++++++..
T Consensus 361 l~~~~~~~ 368 (400)
T 1s2m_A 361 LINWNDRF 368 (400)
T ss_dssp EECGGGHH
T ss_pred EeccchHH
Confidence 99987653
No 18
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-40 Score=355.24 Aligned_cols=325 Identities=16% Similarity=0.190 Sum_probs=226.1
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
.....++++++|.+++..+..|++++++||||||||.++..++.... ..+.+++++.|++.++.|+.+.+...++ .+
T Consensus 178 ~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l--~~g~rvlvl~PtraLa~Q~~~~l~~~~~-~V 254 (1108)
T 3l9o_A 178 ARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-DV 254 (1108)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHTS-SE
T ss_pred HHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEcCcHHHHHHHHHHHHHHhC-Cc
Confidence 34567789999999999999999999999999999976666655443 2356899999999999999999988776 32
Q ss_pred CCeEeEeE---eecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 014085 88 GQRVGYSI---RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 162 (431)
Q Consensus 88 ~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (431)
+...|... .....+.+.+.+...+.. ..+.++++||+||||
T Consensus 255 glltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH---------------------------------- 300 (1108)
T 3l9o_A 255 GLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH---------------------------------- 300 (1108)
T ss_dssp EEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG----------------------------------
T ss_pred cEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh----------------------------------
Confidence 22222111 111223445555544432 226689999999998
Q ss_pred CCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCC-----CceEEecCceeeeeEeeecCCCc-
Q 014085 163 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLYPEP- 235 (431)
Q Consensus 163 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 235 (431)
++.+.+|+..+...+..+. ++.++++||||+ +...+++|++. ..++..+.+..++..++......
T Consensus 301 ----~l~d~~rg~~~e~ii~~l~----~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~ 372 (1108)
T 3l9o_A 301 ----YMRDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDG 372 (1108)
T ss_dssp ----GTTSHHHHHHHHHHHHHSC----TTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSC
T ss_pred ----hccccchHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcc
Confidence 4444444444444444332 678999999999 77788888742 33444555555555544321100
Q ss_pred ---------ch-----------------------------------------HHHHHHHHHHHhhcCCCCcEEEEcCCHH
Q 014085 236 ---------DY-----------------------------------------LDATLITIFQVHLDEAPGDILVFLTGQE 265 (431)
Q Consensus 236 ---------~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~lVF~~s~~ 265 (431)
.+ ....+..++..+.....+++||||+|++
T Consensus 373 ~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~ 452 (1108)
T 3l9o_A 373 IYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKR 452 (1108)
T ss_dssp CEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred eeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHH
Confidence 00 0222333444555556779999999999
Q ss_pred HHHHHHHHHHHHHhcCC---------------------cCC---------CceEEEEcCCCCCHHHHhhhhCcCCCCCcE
Q 014085 266 EIESVERLVQERLLQLP---------------------EAS---------RKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 315 (431)
Q Consensus 266 ~~~~l~~~l~~~~~~~~---------------------~~~---------~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~ 315 (431)
+|+.++..|....-... ... ....+..+||+|++.+|..+++.|++|.++
T Consensus 453 ~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik 532 (1108)
T 3l9o_A 453 DCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK 532 (1108)
T ss_dssp HHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe
Confidence 99999998865311000 000 011288899999999999999999999999
Q ss_pred EEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 316 VILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 316 vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
|||||+++++|+|+|++++||++.. .||.. ...|.|..+|+||+|||||.| .|.||.++++.
T Consensus 533 VLVAT~vla~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 533 VLFATETFSIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEEEESCCCSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred EEEECcHHhcCCCCCCceEEEecCc----ccCcc------ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 9999999999999999999998332 23322 124889999999999999999 79999998754
No 19
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.8e-38 Score=318.85 Aligned_cols=296 Identities=18% Similarity=0.276 Sum_probs=204.5
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
.-.++++|.+++..+.+|+++++++|||+|||.+....+... ...++++.|++.++.++.+.+... +. .+
T Consensus 23 ~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~~aL~~q~~~~l~~~-gi----~~ 92 (523)
T 1oyw_A 23 YQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISLMKDQVDQLQAN-GV----AA 92 (523)
T ss_dssp CSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHHHHHHHHHHHHT-TC----CE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECChHHHHHHHHHHHHHc-CC----cE
Confidence 346799999999999999999999999999995333333222 235788889999999888877653 22 12
Q ss_pred eEeEeecCCCChhHhH---H---------------HHhcc-----cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 92 GYSIRFDDRTSTSTRI---K---------------EALLD-----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 92 ~~~~~~~~~~~~~~~~---~---------------~~~~~-----~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
... .+........ . .+... ....+++++|+||||+
T Consensus 93 ~~l---~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~------------------- 150 (523)
T 1oyw_A 93 ACL---NSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC------------------- 150 (523)
T ss_dssp EEE---CTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG-------------------
T ss_pred EEE---eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc-------------------
Confidence 211 1111111110 0 11100 1136789999999994
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCC-cccccccccCCCCCceEEEEcCCCChHH---HHhhhC-CCceEEecCcee
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNG-INTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFG-CAKAVHVQGRQF 223 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~lSAT~~~~~---l~~~~~-~~~~~~~~~~~~ 223 (431)
+.++++.... ...+..+.... ++.+++++|||++... +.++++ ..+.+.......
T Consensus 151 -------------------i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r 210 (523)
T 1oyw_A 151 -------------------ISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDR 210 (523)
T ss_dssp -------------------GCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCC
T ss_pred -------------------cCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCC
Confidence 3333321110 01111121111 5688999999996653 445665 233333333222
Q ss_pred eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
+ ...+......+.... +.+.....+++++||||+|+++|+.+++.|.+. ++.+..+||+|+.++|.
T Consensus 211 ~-~l~~~v~~~~~~~~~----l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~---------g~~~~~~h~~l~~~~R~ 276 (523)
T 1oyw_A 211 P-NIRYMLMEKFKPLDQ----LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK---------GISAAAYHAGLENNVRA 276 (523)
T ss_dssp T-TEEEEEEECSSHHHH----HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred C-ceEEEEEeCCCHHHH----HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHH
Confidence 2 222222222333333 333333345678999999999999999999987 88999999999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~ 382 (431)
.+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+.++|+||+|||||.| +|.|+.
T Consensus 277 ~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~----------~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 277 DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp HHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------EC----------CCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999999999999999999 55 5899999999999999999 999999
Q ss_pred eeChhhhhc
Q 014085 383 LYPENEFDK 391 (431)
Q Consensus 383 l~~~~~~~~ 391 (431)
++++++...
T Consensus 339 ~~~~~d~~~ 347 (523)
T 1oyw_A 339 FYDPADMAW 347 (523)
T ss_dssp EECHHHHHH
T ss_pred EeCHHHHHH
Confidence 999887543
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.4e-39 Score=318.33 Aligned_cols=315 Identities=16% Similarity=0.242 Sum_probs=103.8
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
+.+...+...++++|+++++.+..|+++++++|||+|||.++...+..... ...+.+++++.|++.++.|+.+.+.++.
T Consensus 34 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 34 RGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 344445566899999999999999999999999999999654444443322 2235578999999999999998887765
Q ss_pred CCccCCeEeEeEee-------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 84 GVELGQRVGYSIRF-------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 84 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
... +..++..... .....+...+...+.. ..+.+++++|+||||...
T Consensus 114 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~----------------- 175 (394)
T 1fuu_A 114 FHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML----------------- 175 (394)
T ss_dssp TTS-CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH-----------------
T ss_pred ccC-CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh-----------------
Confidence 432 2222211110 0111222333333322 235789999999999421
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHH---HHhhhCCCceEEecCceeee
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARG---FSEYFGCAKAVHVQGRQFPV 225 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~---l~~~~~~~~~~~~~~~~~~~ 225 (431)
+.++.. .+..+.....+..+++++|||++... ...++.+...+.........
T Consensus 176 ---------------------~~~~~~----~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (394)
T 1fuu_A 176 ---------------------SSGFKE----QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL 230 (394)
T ss_dssp ---------------------HTTCHH----HHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----
T ss_pred ---------------------CCCcHH----HHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccC
Confidence 111110 11111111125678999999995533 33566655444444322211
Q ss_pred ---eEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHH
Q 014085 226 ---EILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQ 302 (431)
Q Consensus 226 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r 302 (431)
...+......+. ....+.........+++||||+++++++.+++.|.+. ++.+..+||+++.++|
T Consensus 231 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r 298 (394)
T 1fuu_A 231 EGIKQFYVNVEEEEY---KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQER 298 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEcCchhh---HHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc---------CCeEEEeeCCCCHHHH
Confidence 112221111111 1222333333345678999999999999999999886 8889999999999999
Q ss_pred hhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEE
Q 014085 303 MRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCF 381 (431)
Q Consensus 303 ~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~ 381 (431)
..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+
T Consensus 299 ~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~--------~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~ 360 (394)
T 1fuu_A 299 DTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAI 360 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHcCcccCCCCCceEE
Confidence 99999999999999999999999999999999998 55 4788899999999999998 99999
Q ss_pred EeeChhhhhcC
Q 014085 382 RLYPENEFDKL 392 (431)
Q Consensus 382 ~l~~~~~~~~~ 392 (431)
.++++++...+
T Consensus 361 ~~~~~~~~~~~ 371 (394)
T 1fuu_A 361 NFVTNEDVGAM 371 (394)
T ss_dssp -----------
T ss_pred EEEchhHHHHH
Confidence 99998876543
No 21
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-38 Score=340.49 Aligned_cols=323 Identities=17% Similarity=0.225 Sum_probs=228.5
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
...++++++|.+++..+..|++++++||||||||.++...+.... ..+.+++++.|++.++.|+.+.+...++ .++.
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l--~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vgl 158 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSL--KNKQRVIYTSPIKALSNQKYRELLAEFG-DVGL 158 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHH--HTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHh--ccCCeEEEECChHHHHHHHHHHHHHHhC-CEEE
Confidence 446789999999999999999999999999999966544444332 2356799999999999999999988776 3322
Q ss_pred eEeEeEe---ecCCCChhHhHHHHhc--ccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCC
Q 014085 90 RVGYSIR---FDDRTSTSTRIKEALL--DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNEN 164 (431)
Q Consensus 90 ~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (431)
..|.... ....+.+.+.+...+. ...+.+++++|+||||
T Consensus 159 ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH------------------------------------ 202 (1010)
T 2xgj_A 159 MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH------------------------------------ 202 (1010)
T ss_dssp ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGG------------------------------------
T ss_pred EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechh------------------------------------
Confidence 2221111 1112344555554432 2456789999999998
Q ss_pred ccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhC-----CCceEEecCceeeeeEeeecCC-----
Q 014085 165 SDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFG-----CAKAVHVQGRQFPVEILYTLYP----- 233 (431)
Q Consensus 165 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----- 233 (431)
++.+.+++..++..+..+. ++.+++++|||+ +...+++|++ ...++..+.+..++..++....
T Consensus 203 --~l~d~~rg~~~e~il~~l~----~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~ 276 (1010)
T 2xgj_A 203 --YMRDKERGVVWEETIILLP----DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIY 276 (1010)
T ss_dssp --GGGCTTTHHHHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCE
T ss_pred --hhcccchhHHHHHHHHhcC----CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCccee
Confidence 6677777666666655543 678999999999 8888998875 2334444555555555443211
Q ss_pred -----Ccch----H-------------------------------------HHHHHHHHHHhhcCCCCcEEEEcCCHHHH
Q 014085 234 -----EPDY----L-------------------------------------DATLITIFQVHLDEAPGDILVFLTGQEEI 267 (431)
Q Consensus 234 -----~~~~----~-------------------------------------~~~~~~~~~~~~~~~~~~~lVF~~s~~~~ 267 (431)
...+ . ...+..+...+...+.+++||||+|++.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~ 356 (1010)
T 2xgj_A 277 LVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDC 356 (1010)
T ss_dssp EEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHH
T ss_pred eeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHH
Confidence 0000 0 11122334444444566899999999999
Q ss_pred HHHHHHHHHHH------------------hcCCcCC------------CceEEEEcCCCCCHHHHhhhhCcCCCCCcEEE
Q 014085 268 ESVERLVQERL------------------LQLPEAS------------RKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVI 317 (431)
Q Consensus 268 ~~l~~~l~~~~------------------~~~~~~~------------~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vL 317 (431)
+.++..|.+.. ..+.... ....+..+||+|++++|..+++.|++|.++||
T Consensus 357 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVL 436 (1010)
T 2xgj_A 357 EELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVL 436 (1010)
T ss_dssp HHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEE
Confidence 99998886520 0000000 01248889999999999999999999999999
Q ss_pred EecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 318 LATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 318 vaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
|||+++++|+|+|++++||+. ...||... ..|.+..+|+||+|||||.| .|.|+.++++.
T Consensus 437 VAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 437 FATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred EEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 999999999999999999972 23366322 24889999999999999999 49999999754
No 22
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.7e-37 Score=346.41 Aligned_cols=330 Identities=15% Similarity=0.132 Sum_probs=231.9
Q ss_pred cCChHHHHHHHHHHHh-CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCe
Q 014085 12 SLPIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQR 90 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~-~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~ 90 (431)
+-..+|+|.++++.+. .+++++++||||||||.++.+.+........+.+++++.|+++++.|..+.+.+.++...+..
T Consensus 924 f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~ 1003 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCE
Confidence 3347899999999996 567899999999999988777776665544556789999999999999998887776555555
Q ss_pred EeEeEe-----------ecCCCChhHhHHHHhc----ccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCC
Q 014085 91 VGYSIR-----------FDDRTSTSTRIKEALL----DPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGH 155 (431)
Q Consensus 91 ~~~~~~-----------~~~~~~~~~~~~~~~~----~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (431)
++...+ .+..+.+++++..++. ...+++++++|+||+|...
T Consensus 1004 V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~------------------------ 1059 (1724)
T 4f92_B 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIG------------------------ 1059 (1724)
T ss_dssp EEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGG------------------------
T ss_pred EEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcC------------------------
Confidence 553321 1112233444433332 2346789999999999422
Q ss_pred CCCCCCCCCccccccCCCCCCCcccccc---cccCCCCCceEEEEcCCC-ChHHHHhhhCCC--ceEEecC--ceeeeeE
Q 014085 156 SNGNNNNENSDMILDRGNDTNGINTLKQ---CQGRKFAPLKLIIMSASL-DARGFSEYFGCA--KAVHVQG--RQFPVEI 227 (431)
Q Consensus 156 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~--~~~~~~~--~~~~~~~ 227 (431)
| .++..++..+.. +..+..++.|+|+||||+ |++++++|++.. ..+.+.. ++.+++.
T Consensus 1060 --------------d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~ 1124 (1724)
T 4f92_B 1060 --------------G-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLEL 1124 (1724)
T ss_dssp --------------S-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEE
T ss_pred --------------C-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEE
Confidence 2 122222222221 112233678999999999 999999999754 3444443 3344555
Q ss_pred eeecCCCcchHHHH---HHHHHHH-hhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc--------------------
Q 014085 228 LYTLYPEPDYLDAT---LITIFQV-HLDEAPGDILVFLTGQEEIESVERLVQERLLQLPE-------------------- 283 (431)
Q Consensus 228 ~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~-------------------- 283 (431)
+............. ...+... ....+.+++||||+|++.|+.++..|.+.+.....
T Consensus 1125 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 1204 (1724)
T 4f92_B 1125 HIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS 1204 (1724)
T ss_dssp EEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC
T ss_pred EEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc
Confidence 44444433332221 1222222 23355788999999999999999988766532110
Q ss_pred -----CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeee
Q 014085 284 -----ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 358 (431)
Q Consensus 284 -----~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~ 358 (431)
.....+++.|||||++++|..+++.|++|.++|||||+++++|||+|++++||. .+..||...... .
T Consensus 1205 d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~----~~~~~dg~~~~~----~ 1276 (1724)
T 4f92_B 1205 DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIM----DTQYYNGKIHAY----V 1276 (1724)
T ss_dssp CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEE----CSEEEETTTTEE----E
T ss_pred cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEe----cCccccCccccc----C
Confidence 011235889999999999999999999999999999999999999999999995 345577554433 5
Q ss_pred ecCHHHHHHhhcccCCCC---CcEEEEeeChhh
Q 014085 359 PISKAQALQRSGRAGREG---PGKCFRLYPENE 388 (431)
Q Consensus 359 p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~ 388 (431)
|.+..+|+||+|||||.| .|.|+.++++.+
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecchH
Confidence 899999999999999998 699999987653
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.6e-37 Score=297.02 Aligned_cols=298 Identities=17% Similarity=0.242 Sum_probs=207.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
..+.++..+...++++|+++++.+.+|+++++++|||+|||.++..++... +..++++.|++.++.|+.+.+.++
T Consensus 5 i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 5 IEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 345556666778999999999999999999999999999996655555443 456888899999999999988776
Q ss_pred hCCccCCeEeEeEee-------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHh
Q 014085 83 SGVELGQRVGYSIRF-------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~ 147 (431)
... .+..++..... +....+.+.+...+.. ..+.+++++|+||||....+. +...+..
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~---- 152 (337)
T 2z0m_A 80 GRY-MDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG--FIDDIKI---- 152 (337)
T ss_dssp TTT-SCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT--CHHHHHH----
T ss_pred hhh-cCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc--cHHHHHH----
Confidence 432 12222211110 0112223333333322 235678999999999422111 0011111
Q ss_pred hccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH---HHHhhhCCCceEEecCceee
Q 014085 148 RSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR---GFSEYFGCAKAVHVQGRQFP 224 (431)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~---~l~~~~~~~~~~~~~~~~~~ 224 (431)
+........+++++|||++.. .+..++.+...+........
T Consensus 153 ------------------------------------~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (337)
T 2z0m_A 153 ------------------------------------ILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLAN 196 (337)
T ss_dssp ------------------------------------HHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGG
T ss_pred ------------------------------------HHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCC
Confidence 111112456888999999554 34467766655543332233
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~ 304 (431)
....+...... .. .. .........+++||||+++++++.+++.|. .+..+||+++.++|.+
T Consensus 197 ~~~~~~~~~~~-~~-~~----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~ 257 (337)
T 2z0m_A 197 VEHKFVHVKDD-WR-SK----VQALRENKDKGVIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNR 257 (337)
T ss_dssp EEEEEEECSSS-SH-HH----HHHHHTCCCSSEEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHH
T ss_pred ceEEEEEeChH-HH-HH----HHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHH
Confidence 33333332222 11 11 133334567889999999999999988764 3677899999999999
Q ss_pred hhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 305 i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.+
T Consensus 258 ~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~----------~~~s~~~~~Q~~GR~gR~g~~g~~~~~ 319 (337)
T 2z0m_A 258 NIDAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FD----------APQDLRTYIHRIGRTGRMGRKGEAITF 319 (337)
T ss_dssp HHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCGGGCCEEEEEE
T ss_pred HHHHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ec----------CCCCHHHhhHhcCccccCCCCceEEEE
Confidence 999999999999999999999999999999999 55 4889999999999999998 8999999
Q ss_pred eC
Q 014085 384 YP 385 (431)
Q Consensus 384 ~~ 385 (431)
+.
T Consensus 320 ~~ 321 (337)
T 2z0m_A 320 IL 321 (337)
T ss_dssp ES
T ss_pred Ee
Confidence 98
No 24
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=8.6e-37 Score=303.54 Aligned_cols=288 Identities=18% Similarity=0.189 Sum_probs=192.9
Q ss_pred HHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeec
Q 014085 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFD 98 (431)
Q Consensus 19 Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (431)
++.....+.+|++++++||||||||+++...+...... .+.+++++.|+++++.|+.+.+. +.. +++.....
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~---g~~----v~~~~~~~ 82 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR---GLP----VRYQTSAV 82 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT---TSC----EEECC---
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc---Cce----EeEEeccc
Confidence 33444556789999999999999997644444332221 34578888999999999988765 221 11111100
Q ss_pred ------CC----CChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCcccc
Q 014085 99 ------DR----TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 168 (431)
Q Consensus 99 ------~~----~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 168 (431)
.. .........++..+.+.+++++|+||||+.+..+...+.++......
T Consensus 83 ~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~--------------------- 141 (459)
T 2z83_A 83 QREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVEL--------------------- 141 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHT---------------------
T ss_pred ccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhcc---------------------
Confidence 00 01111223445556688999999999998877777777776654322
Q ss_pred ccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhh-CCCceEEecCceeeeeEeeecCCCcchHHHHHHHHHH
Q 014085 169 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYF-GCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQ 247 (431)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (431)
++.++++||||++.+. ..+. .+.++..+.. ..+...+.. ....+
T Consensus 142 ---------------------~~~~~il~SAT~~~~~-~~~~~~~~pi~~~~~----------~~~~~~~~~-~~~~l-- 186 (459)
T 2z83_A 142 ---------------------GEAAAIFMTATPPGTT-DPFPDSNAPIHDLQD----------EIPDRAWSS-GYEWI-- 186 (459)
T ss_dssp ---------------------TSCEEEEECSSCTTCC-CSSCCCSSCEEEEEC----------CCCSSCCSS-CCHHH--
T ss_pred ---------------------CCccEEEEEcCCCcch-hhhccCCCCeEEecc----------cCCcchhHH-HHHHH--
Confidence 4679999999995432 2222 1222222211 111111100 00111
Q ss_pred HhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcccccc
Q 014085 248 VHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSV 327 (431)
Q Consensus 248 ~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gv 327 (431)
. ...+++||||+|+++|+.++..|.+. ++.+..+||+ +|..+++.|++|+.+|||||+++++|+
T Consensus 187 --~-~~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~Gi 250 (459)
T 2z83_A 187 --T-EYAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGA 250 (459)
T ss_dssp --H-HCCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---C
T ss_pred --H-hcCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCe
Confidence 1 12678999999999999999999886 8899999984 789999999999999999999999999
Q ss_pred ccCCcEEEEeCccccceeecCC--CCceeeeeeecCHHHHHHhhcccCCCC--CcEEEEeeChh
Q 014085 328 TIPGIKYVIDPGFVKARLYDPV--KGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYPEN 387 (431)
Q Consensus 328 dip~v~~VI~~~~~~~~~~d~~--~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G~~~~l~~~~ 387 (431)
|+|+ ++||++|..+.+.|+.. .....+...|.|.++|+||+|||||.| +|.|+.++++.
T Consensus 251 Dip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 251 NFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 9999 99999998777765432 222211237999999999999999998 89999999764
No 25
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.8e-37 Score=344.66 Aligned_cols=327 Identities=17% Similarity=0.178 Sum_probs=227.7
Q ss_pred ChHHHHHHHHHHHh-CCCEEEEEcCCCCChhccHhHHhhhccc---------ccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 14 PIASVEKRLVEEVR-KNDILIIVGETGSGKTTQLPQFLFHAGF---------CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~-~g~~~vi~apTGsGKT~~~~~~~~~~~~---------~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
.++++|.++++.+. .++|++++||||||||.++.+.+..... ..++.+++++.|+++++.|..+.+.+.+
T Consensus 79 ~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~ 158 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRL 158 (1724)
T ss_dssp BCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHH
Confidence 47899999999876 6889999999999999666555543321 1235679999999999999999887765
Q ss_pred CCccCCeEeEeEee-----------cCCCChhHhHHHHhcc----cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 84 GVELGQRVGYSIRF-----------DDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 84 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
.. .+..++...+. +..+.+++++..++.. ..+++++++|+||+|.
T Consensus 159 ~~-~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~------------------- 218 (1724)
T 4f92_B 159 AT-YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHL------------------- 218 (1724)
T ss_dssp TT-TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGG-------------------
T ss_pred hh-CCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchh-------------------
Confidence 42 23333322111 1122445555444432 2367899999999993
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccc---cCCCCCceEEEEcCCC-ChHHHHhhhCCCc---eEEecCc
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQ---GRKFAPLKLIIMSASL-DARGFSEYFGCAK---AVHVQGR 221 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~---~~~~~~~ 221 (431)
+.| .||+.++..+.++. ....++.|+|+||||+ |.+++++|++..+ ...++..
T Consensus 219 -------------------l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~ 278 (1724)
T 4f92_B 219 -------------------LHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNS 278 (1724)
T ss_dssp -------------------GGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGG
T ss_pred -------------------cCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCC
Confidence 322 34444433333221 1223678999999999 9999999998642 3455544
Q ss_pred eee--eeEeeecCCCcchHH---HHHHHHHHHh-hcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCc------------
Q 014085 222 QFP--VEILYTLYPEPDYLD---ATLITIFQVH-LDEAPGDILVFLTGQEEIESVERLVQERLLQLPE------------ 283 (431)
Q Consensus 222 ~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~------------ 283 (431)
.+| ++..+.......... .....++... ....++++||||+|++.|+.+|+.|.+.+.....
T Consensus 279 ~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 358 (1724)
T 4f92_B 279 FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAST 358 (1724)
T ss_dssp GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCS
T ss_pred CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHH
Confidence 444 444433333322221 1222233332 2334678999999999999999999876532110
Q ss_pred ----------------CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeec
Q 014085 284 ----------------ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYD 347 (431)
Q Consensus 284 ----------------~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d 347 (431)
......++.+||||++++|..+++.|++|.++|||||+++++|||+|++++||. .+..||
T Consensus 359 ~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~----~~~~~~ 434 (1724)
T 4f92_B 359 EVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYS 434 (1724)
T ss_dssp SHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEE----CCEEEE
T ss_pred HHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEe----CCEEec
Confidence 011245888999999999999999999999999999999999999999999995 455688
Q ss_pred CCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChhh
Q 014085 348 PVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPENE 388 (431)
Q Consensus 348 ~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~~ 388 (431)
+..+.. .|.+..+|+||+|||||.| .|.++.+.++++
T Consensus 435 ~~~~~~----~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 435 PEKGRW----TELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp TTTTEE----EECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred CcCCCc----ccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 776644 4899999999999999988 699999987654
No 26
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2e-37 Score=332.19 Aligned_cols=322 Identities=17% Similarity=0.192 Sum_probs=225.9
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHh-CCccC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES-GVELG 88 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~-~~~~~ 88 (431)
...|+++++|.+++..+.+|++++++||||||||.+....+.... ..+.+++++.|++.++.|+.+.+.+.+ +..++
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--RNMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--HTTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 445779999999999999999999999999999954333333221 235678899999999999999887754 22222
Q ss_pred CeEeEeEe---ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 014085 89 QRVGYSIR---FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNE 163 (431)
Q Consensus 89 ~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (431)
...|.... ......+.+.+...+.. ..+.++++||+||||
T Consensus 113 ~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH----------------------------------- 157 (997)
T 4a4z_A 113 LITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH----------------------------------- 157 (997)
T ss_dssp EECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-----------------------------------
T ss_pred EEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-----------------------------------
Confidence 22221111 11122444555443322 246789999999998
Q ss_pred CccccccCCCCCCCcccccccccCCCCCceEEEEcCCC-ChHHHHhhhCC-----CceEEecCceeeeeEeeecCC----
Q 014085 164 NSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGC-----AKAVHVQGRQFPVEILYTLYP---- 233 (431)
Q Consensus 164 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---- 233 (431)
++.|.+++..|+..+..+. ++.++|++|||+ +...+++|++. ..++....+..|+..++....
T Consensus 158 ---~l~d~~~g~~~e~ii~~l~----~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~ 230 (997)
T 4a4z_A 158 ---YVNDQDRGVVWEEVIIMLP----QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIP 230 (997)
T ss_dssp ---CCCTTCTTCCHHHHHHHSC----TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEE
T ss_pred ---cccccchHHHHHHHHHhcc----cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchh
Confidence 7888899998888877765 678999999999 89999999852 234444455555554432110
Q ss_pred ----Ccch------------------------------------------------------------------------
Q 014085 234 ----EPDY------------------------------------------------------------------------ 237 (431)
Q Consensus 234 ----~~~~------------------------------------------------------------------------ 237 (431)
...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 310 (997)
T 4a4z_A 231 VINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNK 310 (997)
T ss_dssp EECTTCCBCHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred cccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000
Q ss_pred ---------HHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHH------------------hcCCc-------
Q 014085 238 ---------LDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERL------------------LQLPE------- 283 (431)
Q Consensus 238 ---------~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~------------------~~~~~------- 283 (431)
....+..+...+...+.+++||||+|+++|+.++..|.+.. ..+..
T Consensus 311 ~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 390 (997)
T 4a4z_A 311 RKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQ 390 (997)
T ss_dssp ------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHH
T ss_pred cccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 00113344455555567899999999999999999885410 00000
Q ss_pred -----CCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeee
Q 014085 284 -----ASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVV 358 (431)
Q Consensus 284 -----~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~ 358 (431)
......+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|+. +..+ ||.. ...
T Consensus 391 ~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~-~~~k---~dg~------~~~ 460 (997)
T 4a4z_A 391 ILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFS-SIRK---HDGN------GLR 460 (997)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEES-CSEE---EETT------EEE
T ss_pred HHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEe-cccc---ccCc------cCC
Confidence 000225788999999999999999999999999999999999999999666663 3322 4432 225
Q ss_pred ecCHHHHHHhhcccCCCC---CcEEEEeeC
Q 014085 359 PISKAQALQRSGRAGREG---PGKCFRLYP 385 (431)
Q Consensus 359 p~s~~~~~qr~GR~gR~~---~G~~~~l~~ 385 (431)
|.|..+|+||+|||||.| .|.||.++.
T Consensus 461 ~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 461 ELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp ECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred CCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 889999999999999988 799999984
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-39 Score=322.26 Aligned_cols=312 Identities=14% Similarity=0.184 Sum_probs=191.5
Q ss_pred ccCChHHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHHHHhCCcc
Q 014085 11 KSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEESGVEL 87 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~ 87 (431)
+...++++|++++..+.+| ++++++||||||||.++...+...... ..+.+++++.|++.++.|+.+.+.++.....
T Consensus 138 g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~ 217 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTE 217 (508)
T ss_dssp -CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSS
T ss_pred cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccC
Confidence 3345889999999999998 999999999999996655555444322 2245799999999999999998887754321
Q ss_pred -CCeEeEeE--------eecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCC
Q 014085 88 -GQRVGYSI--------RFDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 156 (431)
Q Consensus 88 -~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (431)
....+... .......+...+...+.. ..+.+++++|+||||.......+ ...+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~-~~~~~~i------------ 284 (508)
T 3fho_A 218 VKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL-GDQSMRI------------ 284 (508)
T ss_dssp CCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--C-HHHHHHH------------
T ss_pred eeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCc-HHHHHHH------------
Confidence 11111110 011122334444443332 23678999999999953321111 1111111
Q ss_pred CCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCC--hHHHHh-hhCCCceEEecCceee---eeEeee
Q 014085 157 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD--ARGFSE-YFGCAKAVHVQGRQFP---VEILYT 230 (431)
Q Consensus 157 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~--~~~l~~-~~~~~~~~~~~~~~~~---~~~~~~ 230 (431)
.....++.+++++|||++ .+.+.. ++++...+........ ....+.
T Consensus 285 ----------------------------~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 336 (508)
T 3fho_A 285 ----------------------------KHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYM 336 (508)
T ss_dssp ----------------------------HHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEE
T ss_pred ----------------------------HHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEE
Confidence 111125679999999994 445554 4444444433332221 122222
Q ss_pred cCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCC
Q 014085 231 LYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAA 310 (431)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~ 310 (431)
..... ......+.........+++||||+++++|+.++..|.+. ++.+..+||+++.++|..+++.|+
T Consensus 337 ~~~~~---~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~---------~~~v~~~hg~~~~~~R~~il~~f~ 404 (508)
T 3fho_A 337 DCQSE---EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD---------GHTVACLTGNLEGAQRDAIMDSFR 404 (508)
T ss_dssp EC--C---HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT---------TCCCCEEC-----CTTGGGTHHHH
T ss_pred ECCch---HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 22122 222334444555556789999999999999999999775 788999999999999999999999
Q ss_pred CCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChh
Q 014085 311 AGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPEN 387 (431)
Q Consensus 311 ~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~ 387 (431)
+|+.+|||||+++++|+|+|++++||+ ||.+.... ...+..+|+||+||+||.| +|.|+.+++++
T Consensus 405 ~g~~~VLVaT~~l~~GiDip~v~~VI~--------~~~p~~~~----~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 405 VGTSKVLVTTNVIARGIDVSQVNLVVN--------YDMPLDQA----GRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp SSSCCCCEECC-----CCCTTCCEEEC------------CC---------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CCCCeEEEeCChhhcCCCccCCCEEEE--------ECCCCccc----CCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999999999999999999998 55221111 1268889999999999999 89999999753
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.2e-38 Score=314.14 Aligned_cols=310 Identities=15% Similarity=0.148 Sum_probs=201.3
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
.+..+....++++++|.++++.+.+|++++++||||||||.+...++.... ..+..++++.|++.++.|+.+.+..+.
T Consensus 11 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 11 RSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 344555667889999999999999999999999999999953322222211 235678999999999999999988865
Q ss_pred CCccCCeEeEeEee------------------cCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 84 GVELGQRVGYSIRF------------------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 84 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
. .+..++...+. +....++.++...+......+++++|+||||....+..-
T Consensus 89 ~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~--------- 157 (414)
T 3oiy_A 89 D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRN--------- 157 (414)
T ss_dssp C--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHH---------
T ss_pred c--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccch---------
Confidence 4 33333322111 111222333322333334678999999999953322200
Q ss_pred HhhccccCCCCCCCCCCCCcccccc-CCCCCC-Ccccccccc-----cCCC--CCceEEEEcCCCChHH-----HHhhhC
Q 014085 146 NARSKSADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----GRKF--APLKLIIMSASLDARG-----FSEYFG 211 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~-~~~~~~~~~-----~~~~--~~~~~v~lSAT~~~~~-----l~~~~~ 211 (431)
.|.+++ .++... +...+..+. .... ++.+++++|||+.++. +..+++
T Consensus 158 -------------------~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 158 -------------------IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp -------------------HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred -------------------hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 022333 333222 122222111 1111 5679999999953322 223333
Q ss_pred CCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEE
Q 014085 212 CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV 291 (431)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~ 291 (431)
-. ..........+...+.... ....+...+.. .++++||||+++++|+.++..|.+. ++.+.
T Consensus 219 ~~-~~~~~~~~~~i~~~~~~~~---~~~~l~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~ 280 (414)
T 3oiy_A 219 FT-VGRLVSVARNITHVRISSR---SKEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVG 280 (414)
T ss_dssp CC-SSCCCCCCCSEEEEEESSC---CHHHHHHHHHH-----HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEE
T ss_pred cC-cCccccccccchheeeccC---HHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHc---------CCcee
Confidence 11 1111111122333333322 22222222222 2478999999999999999999986 88888
Q ss_pred -EcCCCCCHHHHhhhhCcCCCCCcEEEEe----cCccccccccCC-cEEEEeCccccceeecCCCCceeeeeee--cCHH
Q 014085 292 -PIFSSLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVKARLYDPVKGMESLLVVP--ISKA 363 (431)
Q Consensus 292 -~lhg~~~~~~r~~i~~~f~~g~~~vLva----T~~~~~Gvdip~-v~~VI~~~~~~~~~~d~~~~~~~~~~~p--~s~~ 363 (431)
.+||+ +|+ ++.|++|+.+|||| |+++++|+|+|+ +++||+ || .| .+..
T Consensus 281 ~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~----------~p~~~~~~ 336 (414)
T 3oiy_A 281 ETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WG----------TPSGPDVY 336 (414)
T ss_dssp ESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ES----------CCTTTCHH
T ss_pred hhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------EC----------CCCCCCHH
Confidence 89985 444 99999999999999 999999999999 999999 66 57 8999
Q ss_pred HHHHhhcccCCCC-----CcEEEEeeChh
Q 014085 364 QALQRSGRAGREG-----PGKCFRLYPEN 387 (431)
Q Consensus 364 ~~~qr~GR~gR~~-----~G~~~~l~~~~ 387 (431)
+|+||+|||||.| .|.|+.++.+.
T Consensus 337 ~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 337 TYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp HHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred HHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 9999999999986 68999999543
No 29
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.2e-37 Score=307.29 Aligned_cols=290 Identities=16% Similarity=0.188 Sum_probs=199.8
Q ss_pred ChHHHHHHHHHHHhCCCEE-EEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEe
Q 014085 14 PIASVEKRLVEEVRKNDIL-IIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVG 92 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~-vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~ 92 (431)
.+.|+|+ +++.+.+|+++ +++||||||||..+...+...... .+.+++++.|+++++.|+.+.+. +. .++
T Consensus 4 q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~---g~----~v~ 74 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR---GL----PIR 74 (451)
T ss_dssp CCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT---TS----CEE
T ss_pred CCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc---Cc----eee
Confidence 3455664 67788877665 999999999996433333222111 34578888899999999988763 21 122
Q ss_pred EeEeec---------CCCChhHh-HHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 014085 93 YSIRFD---------DRTSTSTR-IKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNN 162 (431)
Q Consensus 93 ~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (431)
+..... ....+... ...+...+.+.+++++|+||||..+......+.++......
T Consensus 75 ~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~~--------------- 139 (451)
T 2jlq_A 75 YQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM--------------- 139 (451)
T ss_dssp ECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHHT---------------
T ss_pred eeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhcC---------------
Confidence 211100 00111222 23444556688999999999998866666665555432211
Q ss_pred CCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHHHH
Q 014085 163 ENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATL 242 (431)
Q Consensus 163 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (431)
++.++++||||++.+....+.++.+.+.... ..+... +. . ..
T Consensus 140 ---------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-~~p~~~-~~---~------~~ 181 (451)
T 2jlq_A 140 ---------------------------GEAAAIFMTATPPGSTDPFPQSNSPIEDIER-EIPERS-WN---T------GF 181 (451)
T ss_dssp ---------------------------TSCEEEEECSSCTTCCCSSCCCSSCEEEEEC-CCCSSC-CS---S------SC
T ss_pred ---------------------------CCceEEEEccCCCccchhhhcCCCceEecCc-cCCchh-hH---H------HH
Confidence 5679999999996655444445554444331 111111 00 0 00
Q ss_pred HHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc
Q 014085 243 ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 322 (431)
Q Consensus 243 ~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~ 322 (431)
.... ...+++||||+|+++|+.++..|.+. ++.+..+||++ +..+++.|++|+.+|||||++
T Consensus 182 ----~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v 243 (451)
T 2jlq_A 182 ----DWIT-DYQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTDI 243 (451)
T ss_dssp ----HHHH-HCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECTTT----HHHHGGGGGSSCCSEEEECGG
T ss_pred ----HHHH-hCCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEEECCHHH----HHHHHHhhccCCceEEEECCH
Confidence 1111 12668999999999999999999876 88899999975 457899999999999999999
Q ss_pred cccccccCCcEEEEeCccccceeecCCCCceeeee---eecCHHHHHHhhcccCCCC--CcEEEEeeC
Q 014085 323 AETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLV---VPISKAQALQRSGRAGREG--PGKCFRLYP 385 (431)
Q Consensus 323 ~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~---~p~s~~~~~qr~GR~gR~~--~G~~~~l~~ 385 (431)
+++|+|+|+ ++|||+|+.+.+.||. .+...+.. .|.|.++|+||+|||||.| +|.|+.++.
T Consensus 244 ~~~GiDip~-~~VI~~~~~~~~~~d~-~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 244 SEMGANFRA-GRVIDPRRCLKPVILT-DGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp GGSSCCCCC-SEEEECCEEEEEEEEC-SSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHhCcCCCC-CEEEECCCcccccccc-cccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 999999999 9999999988888873 33333433 7999999999999999999 788988874
No 30
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6.7e-37 Score=310.46 Aligned_cols=300 Identities=19% Similarity=0.203 Sum_probs=209.2
Q ss_pred HHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCC
Q 014085 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGV 85 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~ 85 (431)
.+..+..+|++++|+++...+..+++++++||||||||++++..+... +.+++++.|+++++.|+.+++.+..+.
T Consensus 209 ~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~g~ 283 (666)
T 3o8b_A 209 SMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAHGI 283 (666)
T ss_dssp HHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHSC
T ss_pred hhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHhCC
Confidence 455667788889999999999899999999999999998888777663 447899999999999999998888876
Q ss_pred ccCCeEeEeEe---ecCCCChhHhHHHHhccc--CCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCC
Q 014085 86 ELGQRVGYSIR---FDDRTSTSTRIKEALLDP--YLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNN 160 (431)
Q Consensus 86 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (431)
..+..+|+... .+....+..++ +.++ .+.+++++|+||||..+...+..+..+.+.....
T Consensus 284 ~vg~~vG~~~~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~------------ 348 (666)
T 3o8b_A 284 DPNIRTGVRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETA------------ 348 (666)
T ss_dssp CCEEECSSCEECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTT------------
T ss_pred CeeEEECcEeccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhc------------
Confidence 65555544321 11122334443 3333 3567999999999988776665554444332211
Q ss_pred CCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHH
Q 014085 161 NNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDA 240 (431)
Q Consensus 161 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (431)
....++++|||++... . ........+ ...+.. ...+...
T Consensus 349 -----------------------------~~~llil~SAT~~~~i-~--~~~p~i~~v-------~~~~~~--~i~~~~~ 387 (666)
T 3o8b_A 349 -----------------------------GARLVVLATATPPGSV-T--VPHPNIEEV-------ALSNTG--EIPFYGK 387 (666)
T ss_dssp -----------------------------TCSEEEEEESSCTTCC-C--CCCTTEEEE-------ECBSCS--SEEETTE
T ss_pred -----------------------------CCceEEEECCCCCccc-c--cCCcceEEE-------eecccc--hhHHHHh
Confidence 2334778899995421 0 001111111 100000 0000000
Q ss_pred HHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEec
Q 014085 241 TLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT 320 (431)
Q Consensus 241 ~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT 320 (431)
.. .......+++||||+|+++|+.+++.|++. ++.+..+||+|++++ |+++..+|||||
T Consensus 388 ~~-----~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~---------g~~v~~lHG~l~q~e-------r~~~~~~VLVAT 446 (666)
T 3o8b_A 388 AI-----PIEAIRGGRHLIFCHSKKKCDELAAKLSGL---------GINAVAYYRGLDVSV-------IPTIGDVVVVAT 446 (666)
T ss_dssp EE-----CGGGSSSSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECTTSCGGG-------SCSSSCEEEEEC
T ss_pred hh-----hhhhccCCcEEEEeCCHHHHHHHHHHHHhC---------CCcEEEecCCCCHHH-------HHhCCCcEEEEC
Confidence 00 011235788999999999999999999886 889999999999875 345666999999
Q ss_pred CccccccccCCcEEEEeCccccceee----cCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhhh
Q 014085 321 NIAETSVTIPGIKYVIDPGFVKARLY----DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEFD 390 (431)
Q Consensus 321 ~~~~~Gvdip~v~~VI~~~~~~~~~~----d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~~ 390 (431)
|++++|+|+| |++||++|+.+...+ |+..+.. ....|.+.++|+||+||+||.++|. |.|+++++..
T Consensus 447 dVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~-~~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 447 DALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE-TTTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp TTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE-EEEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred ChHHccCCCC-CcEEEecCcccccccccccccccccc-cccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 9999999996 999999998876653 3334433 3457999999999999999944999 9999876543
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=6.4e-37 Score=313.10 Aligned_cols=288 Identities=16% Similarity=0.186 Sum_probs=201.2
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEe
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIR 96 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (431)
|+|+..++.+.+|++++++||||||||+.+...+...... .+.+++++.|+++++.|+.+.+. + ..+++...
T Consensus 174 piq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~---~----~~v~~~~~ 245 (618)
T 2whx_A 174 PDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR---G----LPIRYQTP 245 (618)
T ss_dssp CCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT---T----SCEEECCT
T ss_pred CccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc---C----CceeEecc
Confidence 4444468889999999999999999997643333322211 34578888899999999988664 1 12222211
Q ss_pred ecCCCC---------hhH-hHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCcc
Q 014085 97 FDDRTS---------TST-RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSD 166 (431)
Q Consensus 97 ~~~~~~---------~~~-~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 166 (431)
...... ... ....++..+.+.+++++|+||||..+...+..+..+......
T Consensus 246 ~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~------------------- 306 (618)
T 2whx_A 246 AVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM------------------- 306 (618)
T ss_dssp TSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH-------------------
T ss_pred cceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc-------------------
Confidence 100011 111 122444556689999999999999866666666665554421
Q ss_pred ccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhC-CCceEEecCceeeeeEeeecCCCcchHHHHHHHH
Q 014085 167 MILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITI 245 (431)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (431)
++.++++||||++.. +..+.. +...+.+... + +...+ ...+..+
T Consensus 307 -----------------------~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-------~---~~~~~-~~ll~~l 351 (618)
T 2whx_A 307 -----------------------GEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-------I---PERSW-NTGFDWI 351 (618)
T ss_dssp -----------------------TSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-------C---CSSCC-SSSCHHH
T ss_pred -----------------------cCccEEEEECCCchh-hhhhhccCCceeeeccc-------C---CHHHH-HHHHHHH
Confidence 467999999999444 223333 2222322221 0 11111 0111111
Q ss_pred HHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcccc
Q 014085 246 FQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAET 325 (431)
Q Consensus 246 ~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~ 325 (431)
. . ..+++||||+|+++|+.+++.|.+. ++.+..+||+ +|.++++.|++|+.+||||||++++
T Consensus 352 ~----~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~r 413 (618)
T 2whx_A 352 T----D-YQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEM 413 (618)
T ss_dssp H----H-CCSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGT
T ss_pred H----h-CCCCEEEEECChhHHHHHHHHHHHc---------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHc
Confidence 1 1 2678999999999999999999987 8889999984 7888999999999999999999999
Q ss_pred ccccCCcEEEEeCccccceee--cCCCCceeeeeeecCHHHHHHhhcccCCCC--CcEEEEeeC
Q 014085 326 SVTIPGIKYVIDPGFVKARLY--DPVKGMESLLVVPISKAQALQRSGRAGREG--PGKCFRLYP 385 (431)
Q Consensus 326 Gvdip~v~~VI~~~~~~~~~~--d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G~~~~l~~ 385 (431)
|+|+| +++||++|+...+.+ +...++......|.+.++|+||+|||||.| +|.|+.+++
T Consensus 414 GiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 414 GANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp TCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 99997 999999998777665 333344455567999999999999999996 899999997
No 32
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=3.6e-36 Score=297.35 Aligned_cols=279 Identities=18% Similarity=0.156 Sum_probs=183.5
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
.+.+|++++++||||||||.++...+...... ++.+++++.|++.++.|+.+.+... . +++.........+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~~---~----v~~~~~~~~~v~Tp 75 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHGL---D----VKFHTQAFSAHGSG 75 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS---C----EEEESSCCCCCCCS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhcC---C----eEEecccceeccCC
Confidence 35689999999999999996643333332211 2456888889999999998876522 1 22211110011111
Q ss_pred H---------hH-HHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCC
Q 014085 105 T---------RI-KEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGND 174 (431)
Q Consensus 105 ~---------~~-~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 174 (431)
. .+ ..++....+.+++++|+||+|..+......+.++......
T Consensus 76 ~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~--------------------------- 128 (440)
T 1yks_A 76 REVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARA--------------------------- 128 (440)
T ss_dssp SCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT---------------------------
T ss_pred ccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhcc---------------------------
Confidence 1 11 2333344578999999999998866666666665554321
Q ss_pred CCCcccccccccCCCCCceEEEEcCCCChHHHHhhhC-CCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCC
Q 014085 175 TNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEA 253 (431)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (431)
.+.++++||||++... ..+.. ..+...+ .. ..+.... ...+..+.+ .
T Consensus 129 ---------------~~~~~l~~SAT~~~~~-~~~~~~~~~~~~~-------~~---~~~~~~~-~~~~~~l~~-----~ 176 (440)
T 1yks_A 129 ---------------NESATILMTATPPGTS-DEFPHSNGEIEDV-------QT---DIPSEPW-NTGHDWILA-----D 176 (440)
T ss_dssp ---------------TSCEEEEECSSCTTCC-CSSCCCSSCEEEE-------EC---CCCSSCC-SSSCHHHHH-----C
T ss_pred ---------------CCceEEEEeCCCCchh-hhhhhcCCCeeEe-------ee---ccChHHH-HHHHHHHHh-----c
Confidence 4679999999995442 12221 1111111 11 1111110 011111111 2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcE
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIK 333 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~ 333 (431)
++++||||+|+++|+.+++.|.+. ++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 678999999999999999999886 888999999 5799999999999999999999999999999 99
Q ss_pred EEEeCccccceeec-CCCCceeeeeeecCHHHHHHhhcccCCC-C-CcEEEEee
Q 014085 334 YVIDPGFVKARLYD-PVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLY 384 (431)
Q Consensus 334 ~VI~~~~~~~~~~d-~~~~~~~~~~~p~s~~~~~qr~GR~gR~-~-~G~~~~l~ 384 (431)
+||++|....+.|+ ...++......|.+.++|+||+||+||. + +|.|+.++
T Consensus 243 ~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 99999988877663 3333444455799999999999999997 4 89999997
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.4e-37 Score=323.29 Aligned_cols=137 Identities=16% Similarity=0.255 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEc--------CCCCCHHHHhhhhCcCCC-CCcEEEEecCcc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPI--------FSSLPSEQQMRVFAPAAA-GFRKVILATNIA 323 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~l--------hg~~~~~~r~~i~~~f~~-g~~~vLvaT~~~ 323 (431)
+.+++||||++++.|+.+++.|.+.. ....+.+..+ ||+|++++|..+++.|++ |+.+|||||+++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechh
Confidence 56789999999999999999998851 0112667777 669999999999999998 999999999999
Q ss_pred ccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhh----------hcCc
Q 014085 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF----------DKLE 393 (431)
Q Consensus 324 ~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~----------~~~~ 393 (431)
++|+|+|++++||+ || .|.+...|+||+|| ||.++|.|+.++++++. +.+.
T Consensus 472 ~~GiDip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~ 532 (696)
T 2ykg_A 472 DEGIDIAQCNLVIL--------YE----------YVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMM 532 (696)
T ss_dssp CCC---CCCSEEEE--------ES----------CC--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcCCcCccCCEEEE--------eC----------CCCCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999 77 46777789999999 99999999999987765 3333
Q ss_pred CCCCCceeccCchHHHHHHH
Q 014085 394 DSTKPEIKRCNLSNVILQLK 413 (431)
Q Consensus 394 ~~~~~~~~~~~l~~~~l~l~ 413 (431)
....+++...+.+.+...++
T Consensus 533 ~~~~~~~~~~~~~~~~~~i~ 552 (696)
T 2ykg_A 533 NDSILRLQTWDEAVFREKIL 552 (696)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhhccCHHHHHHHHH
Confidence 44445565666666655544
No 34
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.9e-36 Score=306.32 Aligned_cols=119 Identities=17% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHh--cC-CcCCCceEEEEcCCCCCHHHHhhhhCcCCC-CCcEEEEecCcccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLL--QL-PEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~--~~-~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~-g~~~vLvaT~~~~~Gv 327 (431)
.+..++||||++++.++.+++.|.+... .. .....|.....+||+|++++|..+++.|++ |+++|||||+++++|+
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 5578999999999999999999976310 00 011225556667899999999999999999 9999999999999999
Q ss_pred ccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhh
Q 014085 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (431)
Q Consensus 328 dip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~ 389 (431)
|+|++++||+ || .|.+...|+||+|| ||.++|.|+.|+++.+.
T Consensus 468 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 468 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp -----CEEEE--------ET----------CCSCHHHHHHC---------CCEEEEESCHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCcch
Confidence 9999999999 77 58899999999999 99999999999987654
No 35
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.1e-36 Score=310.28 Aligned_cols=312 Identities=20% Similarity=0.194 Sum_probs=210.7
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
...+|++++++||||||||+.+...+... + ..+++.|+++++.|+.+++... +..++...|.... ...+.
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al~~l~~~-----~-~gl~l~PtR~LA~Qi~~~l~~~-g~~v~lltG~~~~---iv~Tp 220 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAIQKYFSA-----K-SGVYCGPLKLLAHEIFEKSNAA-GVPCDLVTGEERV---TVQPN 220 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHHHHHHHS-----S-SEEEEESSHHHHHHHHHHHHHT-TCCEEEECSSCEE---CCSTT
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhc-----C-CeEEEeCHHHHHHHHHHHHHhc-CCcEEEEECCeeE---EecCC
Confidence 44588999999999999997444443332 1 2477799999999999987654 4333333332111 11111
Q ss_pred HhHHHHh-----cccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcc
Q 014085 105 TRIKEAL-----LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGIN 179 (431)
Q Consensus 105 ~~~~~~~-----~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 179 (431)
.+...++ .......++++|+|||| +++|.+++..+..
T Consensus 221 Gr~~~il~~T~e~~~l~~~v~lvVIDEaH--------------------------------------~l~d~~~g~~~~~ 262 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSVTTPYEVAVIDEIQ--------------------------------------MIRDPARGWAWTR 262 (677)
T ss_dssp CCCCSEEEEEGGGCCSSSCEEEEEECSGG--------------------------------------GGGCTTTHHHHHH
T ss_pred CcccceeEecHhHhhhcccCCEEEEecce--------------------------------------ecCCccchHHHHH
Confidence 1111111 11235678999999998 5666667666666
Q ss_pred cccccccCCCCCceEEEEcCCC-ChHHHHhhhCCCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEE
Q 014085 180 TLKQCQGRKFAPLKLIIMSASL-DARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDIL 258 (431)
Q Consensus 180 ~~~~~~~~~~~~~~~v~lSAT~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (431)
.+..+.. .+.+++++|||. ..+.+....+....+....+..+.... ...- ...... ..+.+
T Consensus 263 ~l~~l~~---~~i~il~~SAT~~~i~~l~~~~~~~~~v~~~~r~~~l~~~--~~~l------------~~l~~~-~~g~i 324 (677)
T 3rc3_A 263 ALLGLCA---EEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVL--DHAL------------ESLDNL-RPGDC 324 (677)
T ss_dssp HHHHCCE---EEEEEEECGGGHHHHHHHHHHHTCCEEEEECCCSSCEEEC--SSCC------------CSGGGC-CTTEE
T ss_pred HHHccCc---cceEEEeccchHHHHHHHHHhcCCceEEEEeeecchHHHH--HHHH------------HHHHhc-CCCCE
Confidence 6655542 467899999996 444444554443222222222222221 1100 001111 34468
Q ss_pred EEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCC--CCcEEEEecCccccccccCCcEEEE
Q 014085 259 VFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAA--GFRKVILATNIAETSVTIPGIKYVI 336 (431)
Q Consensus 259 VF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~--g~~~vLvaT~~~~~Gvdip~v~~VI 336 (431)
|||+|+++++.++..|.+. ++.+..+||+|++++|..+++.|++ |+.+|||||+++++|+|+ ++++||
T Consensus 325 If~~s~~~ie~la~~L~~~---------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI 394 (677)
T 3rc3_A 325 IVCFSKNDIYSVSRQIEIR---------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRII 394 (677)
T ss_dssp EECSSHHHHHHHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEE
T ss_pred EEEcCHHHHHHHHHHHHhc---------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEE
Confidence 9999999999999999986 8899999999999999999999998 889999999999999999 899999
Q ss_pred eCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC----CcEEEEeeChh--hhhcCcCCCCCceeccCchHHHH
Q 014085 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG----PGKCFRLYPEN--EFDKLEDSTKPEIKRCNLSNVIL 410 (431)
Q Consensus 337 ~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~----~G~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l 410 (431)
++|+.+. .||+..+. ...|.+.++|+||+|||||.| +|.|+.+++.+ .+..+.....+++.+..+....+
T Consensus 395 ~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~ 470 (677)
T 3rc3_A 395 FYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAE 470 (677)
T ss_dssp ESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHH
T ss_pred ECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHH
Confidence 9998775 56654322 135999999999999999999 38999998776 56667777778888877666666
Q ss_pred HHHHcC
Q 014085 411 QLKALG 416 (431)
Q Consensus 411 ~l~~~~ 416 (431)
+++.++
T Consensus 471 ~l~~~~ 476 (677)
T 3rc3_A 471 QIEMFA 476 (677)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666655
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=5.7e-36 Score=307.95 Aligned_cols=294 Identities=16% Similarity=0.177 Sum_probs=197.4
Q ss_pred ChHHHHH-----HHHHHHh------CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 14 PIASVEK-----RLVEEVR------KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 14 ~~~~~Q~-----~~~~~~~------~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.++++|+ ++++.+. +|++++++||||||||.++...+...... .+.+++++.|+++++.|+.+.+..+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhcC
Confidence 4667777 8888877 89999999999999996643333322212 3456888889999999998876532
Q ss_pred hCCccCCeEeEe--EeecCCC----ChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCC
Q 014085 83 SGVELGQRVGYS--IRFDDRT----STSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHS 156 (431)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (431)
.++...+.. ....... ........++....+.+++++|+||||+.+......+..++.....
T Consensus 294 ---~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~--------- 361 (673)
T 2wv9_A 294 ---PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA--------- 361 (673)
T ss_dssp ---CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT---------
T ss_pred ---CeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc---------
Confidence 111000000 0000000 1111223444555688999999999999876666666666655321
Q ss_pred CCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhC-CCceEEecCceeeeeEeeecCCCc
Q 014085 157 NGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEP 235 (431)
Q Consensus 157 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 235 (431)
.+.++++||||++... .++.. ..++..+.. ..+..
T Consensus 362 ---------------------------------~~~~vl~~SAT~~~~i-~~~~~~~~~i~~v~~----------~~~~~ 397 (673)
T 2wv9_A 362 ---------------------------------GEAAAIFMTATPPGTS-DPFPDTNSPVHDVSS----------EIPDR 397 (673)
T ss_dssp ---------------------------------TSCEEEEECSSCTTCC-CSSCCCSSCEEEEEC----------CCCSS
T ss_pred ---------------------------------cCCcEEEEcCCCChhh-hhhcccCCceEEEee----------ecCHH
Confidence 4579999999995431 12221 122221111 11111
Q ss_pred chHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcE
Q 014085 236 DYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK 315 (431)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~ 315 (431)
.. ...+..+ . ...+++||||+|+++|+.++..|.+. ++.+..+|| ++|..+++.|++|+.+
T Consensus 398 ~~-~~~l~~l----~-~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg----~eR~~v~~~F~~g~~~ 458 (673)
T 2wv9_A 398 AW-SSGFEWI----T-DYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNR----KSYDTEYPKCKNGDWD 458 (673)
T ss_dssp CC-SSCCHHH----H-SCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECS----SSHHHHGGGGGTCCCS
T ss_pred HH-HHHHHHH----H-hCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeCh----HHHHHHHHHHHCCCce
Confidence 11 0111111 1 24778999999999999999999876 888999999 4899999999999999
Q ss_pred EEEecCccccccccCCcEEEEeCcccccee--ecCCCCceeeeeeecCHHHHHHhhcccCCC-C-CcEEEEee
Q 014085 316 VILATNIAETSVTIPGIKYVIDPGFVKARL--YDPVKGMESLLVVPISKAQALQRSGRAGRE-G-PGKCFRLY 384 (431)
Q Consensus 316 vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~--~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~-~-~G~~~~l~ 384 (431)
|||||+++++|+|+| +++|||+|....+. ||...+...+...|.+.++|+||+||+||. + +|.|+.++
T Consensus 459 VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 459 FVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp EEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred EEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 999999999999999 99999988655443 454433333344799999999999999999 5 89999996
No 37
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=5.1e-35 Score=288.46 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=188.5
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCC-----
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTS----- 102 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 102 (431)
+|++++++||||||||.++...+..... ..+.+++++.|++.++.|+.+.+. +.. +++.........
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~Pt~~La~Q~~~~~~---~~~----v~~~~~~~~~~~~~~~~ 72 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILAPTRVVASEMYEALR---GEP----IRYMTPAVQSERTGNEI 72 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHTT---TSC----EEEC---------CCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEECcHHHHHHHHHHHhC---CCe----EEEEecCccccCCCCce
Confidence 4789999999999999664333332111 234578888899999999887654 222 222211100000
Q ss_pred ----hhH-hHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCC
Q 014085 103 ----TST-RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNG 177 (431)
Q Consensus 103 ----~~~-~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 177 (431)
... ....++....+.+++++|+||+|.........+..++.....
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~------------------------------ 122 (431)
T 2v6i_A 73 VDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSM------------------------------ 122 (431)
T ss_dssp EEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHT------------------------------
T ss_pred EEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhC------------------------------
Confidence 111 122344455688999999999999876666666666655421
Q ss_pred cccccccccCCCCCceEEEEcCCCChHHHHhhhC-CCceEEecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCc
Q 014085 178 INTLKQCQGRKFAPLKLIIMSASLDARGFSEYFG-CAKAVHVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGD 256 (431)
Q Consensus 178 ~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (431)
++.++++||||+... +.++.. ..+...+.. ..+..+. .. ++..... ..++
T Consensus 123 ------------~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~~~----------~~~~~~~-~~----~~~~l~~-~~~~ 173 (431)
T 2v6i_A 123 ------------GDAGAIFMTATPPGT-TEAFPPSNSPIIDEET----------RIPDKAW-NS----GYEWITE-FDGR 173 (431)
T ss_dssp ------------TSCEEEEEESSCTTC-CCSSCCCSSCCEEEEC----------CCCSSCC-SS----CCHHHHS-CSSC
T ss_pred ------------CCCcEEEEeCCCCcc-hhhhcCCCCceeeccc----------cCCHHHH-HH----HHHHHHc-CCCC
Confidence 467999999999543 222221 222222111 1111111 01 1111112 3678
Q ss_pred EEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEE
Q 014085 257 ILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVI 336 (431)
Q Consensus 257 ~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI 336 (431)
+||||+++++|+.++..|.+. ++.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+||
T Consensus 174 ~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI 239 (431)
T 2v6i_A 174 TVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVI 239 (431)
T ss_dssp EEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEE
Confidence 999999999999999999886 7889999997 688899999999999999999999999999 99999
Q ss_pred eCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEee
Q 014085 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLY 384 (431)
Q Consensus 337 ~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~ 384 (431)
++|..+.+.|| ..++......|.+.++|+||+||+||.| .+.|+.++
T Consensus 240 ~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 240 DPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp ECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999988888 5666666778999999999999999998 34444444
No 38
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.6e-35 Score=291.54 Aligned_cols=111 Identities=23% Similarity=0.371 Sum_probs=100.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCC--------CCCHHHHhhhhCcCCCCCcEEEEecCcc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFS--------SLPSEQQMRVFAPAAAGFRKVILATNIA 323 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg--------~~~~~~r~~i~~~f~~g~~~vLvaT~~~ 323 (431)
.+++++||||++++.++.+++.|.+. ++.+..+|| +++.++|.++++.|++|..+|||||+++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcc
Confidence 46789999999999999999999986 888999999 9999999999999999999999999999
Q ss_pred ccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhh
Q 014085 324 ETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (431)
Q Consensus 324 ~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~ 389 (431)
++|+|+|++++||+ || .|.+...|+||+||+||.|+|.+++++++++.
T Consensus 430 ~~Gldl~~~~~Vi~--------~d----------~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 430 EEGLDVPEVDLVVF--------YE----------PVPSAIRSIQRRGRTGRHMPGRVIILMAKGTR 477 (494)
T ss_dssp GGGGGSTTCCEEEE--------SS----------CCHHHHHHHHHHTTSCSCCCSEEEEEEETTSH
T ss_pred ccCCCchhCCEEEE--------eC----------CCCCHHHHHHHHhhccCCCCceEEEEEecCCH
Confidence 99999999999998 66 57889999999999999999999999987644
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.4e-35 Score=299.07 Aligned_cols=119 Identities=19% Similarity=0.313 Sum_probs=78.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhc---CCcCCCceEEEEcCCCCCHHHHhhhhCcCCC-CCcEEEEecCcccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQ---LPEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~---~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~-g~~~vLvaT~~~~~Gv 327 (431)
.+.+++||||++++.++.++..|.+.... ......|.....+||+|++++|..+++.|++ |+++|||||+++++|+
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 45689999999999999999999875210 0011223455566779999999999999999 9999999999999999
Q ss_pred ccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhh
Q 014085 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (431)
Q Consensus 328 dip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~ 389 (431)
|+|++++||+ || .|.+...|+||+|| ||...|.|+.|+++.+.
T Consensus 467 Dlp~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 467 DIAECNLVIL--------YE----------YVGNVIKMIQTRGR-GRARDSKCFLLTSSADV 509 (555)
T ss_dssp ETTSCSEEEE--------ES----------CCSSCCCEECSSCC-CTTTSCEEEEEESCHHH
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHhcCc-CcCCCceEEEEEcCCCH
Confidence 9999999999 77 47777789999999 99999999999987654
No 40
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-34 Score=307.10 Aligned_cols=119 Identities=17% Similarity=0.274 Sum_probs=64.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhc--C-CcCCCceEEEEcCCCCCHHHHhhhhCcCCC-CCcEEEEecCcccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQ--L-PEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~--~-~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~-g~~~vLvaT~~~~~Gv 327 (431)
.+..++||||++++.++.+++.|.+.... . .....|.....+||+|++++|..+++.|++ |.++|||||+++++|+
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 45689999999999999999999763100 0 011225566778999999999999999999 9999999999999999
Q ss_pred ccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhhh
Q 014085 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENEF 389 (431)
Q Consensus 328 dip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~~ 389 (431)
|+|++++||+ || .|.+...|+||+|| ||..+|.|+.|+++.+.
T Consensus 709 Dlp~v~~VI~--------yd----------~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp --CCCSEEEE--------ES----------CCSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 9999999999 77 58899999999999 99999999999987643
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.1e-33 Score=302.22 Aligned_cols=296 Identities=19% Similarity=0.204 Sum_probs=204.7
Q ss_pred hhccCChHHHHHHHHHHHhC----CC--EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 9 QRKSLPIASVEKRLVEEVRK----ND--ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~----g~--~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
....+.++++|.+++..+.+ |+ +++++||||+|||.++...+.... ..+.+++++.|++.++.|+.+.+.+.
T Consensus 598 ~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~--~~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 598 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV--DNHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp HTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH--HhCCeEEEEechHHHHHHHHHHHHHH
Confidence 35567789999999999886 66 999999999999955433332221 13568999999999999999988876
Q ss_pred hCCccCCeEeEeEeecCCCChhHh---HH--------------HHh-cccCCCCCcEEEEecCCcCccchHHHHHHHHHH
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTR---IK--------------EAL-LDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~ 144 (431)
+.. .+..++...+. .+.... +. ..+ ....+.+++++|+||+|...... ...++.+
T Consensus 676 ~~~-~~i~v~~l~~~---~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~---~~~l~~l 748 (1151)
T 2eyq_A 676 FAN-WPVRIEMISRF---RSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH---KERIKAM 748 (1151)
T ss_dssp STT-TTCCEEEESTT---SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHH---HHHHHHH
T ss_pred hhc-CCCeEEEEeCC---CCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHH---HHHHHHh
Confidence 642 22233322111 111111 00 111 12346789999999999743322 1122211
Q ss_pred HHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCc-eEEecC---
Q 014085 145 QNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAK-AVHVQG--- 220 (431)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~-~~~~~~--- 220 (431)
+ .+.++++||||+.++.+...+.... ...+..
T Consensus 749 ---~-----------------------------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~ 784 (1151)
T 2eyq_A 749 ---R-----------------------------------------ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 784 (1151)
T ss_dssp ---H-----------------------------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC
T ss_pred ---c-----------------------------------------CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC
Confidence 1 5678999999997777765443322 222221
Q ss_pred ceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHH
Q 014085 221 RQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSE 300 (431)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~ 300 (431)
...++...+..... ......+.... ..+++++||||++++++.+++.|.+.. +++.+..+||+|+++
T Consensus 785 ~r~~i~~~~~~~~~----~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~ 851 (1151)
T 2eyq_A 785 RRLAVKTFVREYDS----MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELV-------PEARIAIGHGQMRER 851 (1151)
T ss_dssp BCBCEEEEEEECCH----HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHC-------TTSCEEECCSSCCHH
T ss_pred CccccEEEEecCCH----HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEEeCCCCHH
Confidence 11233333332221 12222222222 236889999999999999999998873 367899999999999
Q ss_pred HHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcE
Q 014085 301 QQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK 379 (431)
Q Consensus 301 ~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~ 379 (431)
+|..+++.|++|+.+|||||+++++|+|+|++++||. ++. .+.+..+|+||+||+||.| .|.
T Consensus 852 eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~---------~~~~l~~l~Qr~GRvgR~g~~g~ 914 (1151)
T 2eyq_A 852 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERA---------DHFGLAQLHQLRGRVGRSHHQAY 914 (1151)
T ss_dssp HHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTT---------TSSCHHHHHHHHTTCCBTTBCEE
T ss_pred HHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCC---------CCCCHHHHHHHHhccCcCCCceE
Confidence 9999999999999999999999999999999999996 332 1356778999999999999 999
Q ss_pred EEEeeChh
Q 014085 380 CFRLYPEN 387 (431)
Q Consensus 380 ~~~l~~~~ 387 (431)
||.+++++
T Consensus 915 ~~ll~~~~ 922 (1151)
T 2eyq_A 915 AWLLTPHP 922 (1151)
T ss_dssp EEEEECCG
T ss_pred EEEEECCc
Confidence 99998754
No 42
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.1e-34 Score=296.33 Aligned_cols=295 Identities=19% Similarity=0.250 Sum_probs=195.6
Q ss_pred hccCChHHHHHHHHHHHhCC------CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 10 RKSLPIASVEKRLVEEVRKN------DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g------~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
...+.++++|++++..+.++ .+++++||||||||.++..++..... .+.+++++.|++.++.|+.+.+.++.
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 45668999999999998875 58999999999999655555443321 24578899999999999999988877
Q ss_pred CCccCCeEeEeEeecCCCChhHhH---H---------------HHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 84 GVELGQRVGYSIRFDDRTSTSTRI---K---------------EALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
.. .+..++... +......+. . .+.....+.+++++|+||+|...
T Consensus 442 ~~-~gi~v~~l~---G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g-------------- 503 (780)
T 1gm5_A 442 SK-FNIHVALLI---GATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFG-------------- 503 (780)
T ss_dssp TC-SSCCEEECC---SSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC---------------
T ss_pred hh-cCceEEEEe---CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhh--------------
Confidence 42 222333221 111211111 1 11122357889999999999311
Q ss_pred HhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHH-hhhCCCceEEecCc---
Q 014085 146 NARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFS-EYFGCAKAVHVQGR--- 221 (431)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~-~~~~~~~~~~~~~~--- 221 (431)
... ...+.. ...+.++++||||+.++.++ .++++.....++..
T Consensus 504 ------------------------~~q-----r~~l~~----~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~ 550 (780)
T 1gm5_A 504 ------------------------VKQ-----REALMN----KGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPG 550 (780)
T ss_dssp ---------------------------------CCCCS----SSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSS
T ss_pred ------------------------HHH-----HHHHHH----hCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCC
Confidence 000 001111 11457899999999887777 45555444343321
Q ss_pred eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH--------HHHHHHHHHHHHhcCCcCCCceEEEEc
Q 014085 222 QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE--------IESVERLVQERLLQLPEASRKLVTVPI 293 (431)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~--------~~~l~~~l~~~~~~~~~~~~~~~v~~l 293 (431)
..++...+.. .+........+.... ..+++++|||++.++ ++.+++.|.+. ..+++.+..+
T Consensus 551 r~~i~~~~~~---~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~------~~~~~~v~~l 619 (780)
T 1gm5_A 551 RKEVQTMLVP---MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE------VFPEFKLGLM 619 (780)
T ss_dssp CCCCEECCCC---SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS------CC---CBCCC
T ss_pred CcceEEEEec---cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh------hcCCCcEEEE
Confidence 1233333322 223333333333333 346789999997755 44444444330 2347789999
Q ss_pred CCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccC
Q 014085 294 FSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAG 373 (431)
Q Consensus 294 hg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~g 373 (431)
||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||+ ||... .+.+.+.||+||+|
T Consensus 620 HG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r---------~~l~~l~Qr~GRaG 682 (780)
T 1gm5_A 620 HGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPER---------FGLAQLHQLRGRVG 682 (780)
T ss_dssp CSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSS---------SCTTHHHHHHHTSC
T ss_pred eCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCC---------CCHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999998 65321 25667899999999
Q ss_pred CCC-CcEEEEeeC
Q 014085 374 REG-PGKCFRLYP 385 (431)
Q Consensus 374 R~~-~G~~~~l~~ 385 (431)
|.| +|.|+.+++
T Consensus 683 R~g~~g~~ill~~ 695 (780)
T 1gm5_A 683 RGGQEAYCFLVVG 695 (780)
T ss_dssp CSSTTCEEECCCC
T ss_pred cCCCCCEEEEEEC
Confidence 999 999999987
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.8e-34 Score=311.71 Aligned_cols=278 Identities=15% Similarity=0.140 Sum_probs=176.5
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
....+.++++|+++++.+..|++++++||||||||.++..++.... ..+..++++.|+++++.|+.+.+..+. ..+
T Consensus 73 ~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~--~~~ 148 (1104)
T 4ddu_A 73 KKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA--DEK 148 (1104)
T ss_dssp HHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTS--CTT
T ss_pred HhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhh--CCC
Confidence 3456789999999999999999999999999999953322222221 335679999999999999999887743 233
Q ss_pred CeEeEeEeecC------------------CCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhcc
Q 014085 89 QRVGYSIRFDD------------------RTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSK 150 (431)
Q Consensus 89 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~ 150 (431)
..++...+... .+.++.++...+....+.+++++|+||||+.....
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~---------------- 212 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKAS---------------- 212 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSS----------------
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccccc----------------
Confidence 33332221111 12223333222222336789999999999533221
Q ss_pred ccCCCCCCCCCCCCcccccc-CCCCCC-Ccccccccc-----cCC--CCCceEEEEcCCCChHH-----HHhhhCCCceE
Q 014085 151 SADGHSNGNNNNENSDMILD-RGNDTN-GINTLKQCQ-----GRK--FAPLKLIIMSASLDARG-----FSEYFGCAKAV 216 (431)
Q Consensus 151 ~~~~~~~~~~~~~~~d~~~~-~~~~~~-~~~~~~~~~-----~~~--~~~~~~v~lSAT~~~~~-----l~~~~~~~~~~ 216 (431)
.+.|.+++ .++... +...+..+. ... ..+.+++++|||+.++. +..++. ..+.
T Consensus 213 ------------r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~ 279 (1104)
T 4ddu_A 213 ------------RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVG 279 (1104)
T ss_dssp ------------HHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCC
T ss_pred ------------ccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEec
Confidence 00133444 444333 222222221 011 15679999999963332 223332 1111
Q ss_pred EecCceeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEE-EcCC
Q 014085 217 HVQGRQFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTV-PIFS 295 (431)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~-~lhg 295 (431)
........+...+.... ....+...+.. .++++||||+|++.|+.++..|.+. ++.+. .+||
T Consensus 280 ~~~~~~~~i~~~~~~~~---k~~~L~~ll~~-----~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg 342 (1104)
T 4ddu_A 280 RLVSVARNITHVRISSR---SKEKLVELLEI-----FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSE 342 (1104)
T ss_dssp BCCCCCCCEEEEEESCC---CHHHHHHHHHH-----HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSS
T ss_pred cCCCCcCCceeEEEecC---HHHHHHHHHHh-----cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecC
Confidence 11111223333333332 22222222221 2488999999999999999999986 88898 9999
Q ss_pred CCCHHHHhhhhCcCCCCCcEEEEe----cCccccccccCC-cEEEEeCcccc
Q 014085 296 SLPSEQQMRVFAPAAAGFRKVILA----TNIAETSVTIPG-IKYVIDPGFVK 342 (431)
Q Consensus 296 ~~~~~~r~~i~~~f~~g~~~vLva----T~~~~~Gvdip~-v~~VI~~~~~~ 342 (431)
. |++ ++.|++|+.+|||| |+++++|+|+|+ |++||++++.+
T Consensus 343 ~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 343 F-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp H-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred c-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 2 555 99999999999999 999999999999 99999966654
No 44
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=6e-33 Score=297.52 Aligned_cols=118 Identities=17% Similarity=0.276 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHh--cC-CcCCCceEEEEcCCCCCHHHHhhhhCcCCC-CCcEEEEecCcccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLL--QL-PEASRKLVTVPIFSSLPSEQQMRVFAPAAA-GFRKVILATNIAETSV 327 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~--~~-~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~-g~~~vLvaT~~~~~Gv 327 (431)
.++.++||||++++.++.+++.|.+... .. .....|.....+||+|++++|.++++.|++ |+++|||||+++++|+
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 4568899999999999999999987410 00 011225556677999999999999999999 9999999999999999
Q ss_pred ccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChhh
Q 014085 328 TIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPENE 388 (431)
Q Consensus 328 dip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~~ 388 (431)
|+|++++||+ || .|.+...|+||+|| ||.++|.|+.+++..+
T Consensus 709 Dlp~v~~VI~--------yD----------~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t 750 (936)
T 4a2w_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVTSKTE 750 (936)
T ss_dssp -CCCCSEEEE--------ES----------CCSCSHHHHCC--------CCCEEEEESCHH
T ss_pred cchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCCEEEEEEeCCC
Confidence 9999999999 87 58888999999999 9999999999998654
No 45
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=303.54 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=87.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCC--------CCHHHHhhhhCcCCCCCcEEEEecCcccc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSS--------LPSEQQMRVFAPAAAGFRKVILATNIAET 325 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~--------~~~~~r~~i~~~f~~g~~~vLvaT~~~~~ 325 (431)
.+++||||++++.++.+++.|.+.. .....|+.+..+||+ |++++|.++++.|++|+.+|||||+++++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~---~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENE---KFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEE 476 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSC---SCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCc---cccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcccccc
Confidence 6889999999999999999997630 111226889999999 99999999999999999999999999999
Q ss_pred ccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEee
Q 014085 326 SVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLY 384 (431)
Q Consensus 326 Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~ 384 (431)
|+|+|++++||+ || .|.+...|+||+|||||.| +.++.++
T Consensus 477 GIDip~v~~VI~--------~d----------~p~s~~~~~Qr~GRArr~g-~~~~l~~ 516 (699)
T 4gl2_A 477 GLDIKECNIVIR--------YG----------LVTNEIAMVQARGRARADE-STYVLVA 516 (699)
T ss_dssp TSCCCSCCCCEE--------ES----------CCCCHHHHHHHHTTSCSSS-CEEEEEE
T ss_pred CCccccCCEEEE--------eC----------CCCCHHHHHHHcCCCCCCC-ceEEEEE
Confidence 999999999999 77 5889999999999987765 4444443
No 46
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=2e-32 Score=274.20 Aligned_cols=290 Identities=15% Similarity=0.162 Sum_probs=186.2
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc-cCC
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE-LGQ 89 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~-~~~ 89 (431)
..++++++|.+++..+..++++++++|||+|||.++..++... +..++++.|++.++.|+.+.+.+ ++.. ++.
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~ 163 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEEYVGE 163 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEE
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEE
Confidence 3567999999999999999999999999999996655555443 34688888999999999888877 4433 221
Q ss_pred eEeEeEe-ecCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCCCCCCCCcccc
Q 014085 90 RVGYSIR-FDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNNNENSDMI 168 (431)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 168 (431)
..|.... .+....+...+..... ....+++++|+||||...
T Consensus 164 ~~g~~~~~~~Ivv~T~~~l~~~~~-~~~~~~~liIvDEaH~~~------------------------------------- 205 (472)
T 2fwr_A 164 FSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHLP------------------------------------- 205 (472)
T ss_dssp BSSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEETGGGTT-------------------------------------
T ss_pred ECCCcCCcCCEEEEEcHHHHHHHH-HhcCCCCEEEEECCcCCC-------------------------------------
Confidence 1111100 0111222232222211 123569999999999422
Q ss_pred ccCCCCCCCcccccccccCCCCCceEEEEcCCCC-hH----HHHhhhCCCceEEec-----Cc-eeeeeE--eeecC---
Q 014085 169 LDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLD-AR----GFSEYFGCAKAVHVQ-----GR-QFPVEI--LYTLY--- 232 (431)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~-~~----~l~~~~~~~~~~~~~-----~~-~~~~~~--~~~~~--- 232 (431)
+..+ ...+..+ +..+++++|||+. .+ .+..+++.. ..... .. ..+... .....
T Consensus 206 -~~~~----~~~~~~~-----~~~~~l~lSATp~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 274 (472)
T 2fwr_A 206 -AESY----VQIAQMS-----IAPFRLGLTATFEREDGRHEILKEVVGGK-VFELFPDSLAGKHLAKYTIKRIFVPLAED 274 (472)
T ss_dssp -STTT----HHHHHTC-----CCSEEEEEESCCCCTTSGGGSHHHHTCCE-EEECCHHHHTSCCCCSEEECCEEECCCHH
T ss_pred -ChHH----HHHHHhc-----CCCeEEEEecCccCCCCHHHHHHHHhCCe-EeecCHHHHhcCcCCCeEEEEEEcCCCHH
Confidence 1111 1111111 4567899999993 11 133333211 11100 00 000000 00000
Q ss_pred ---------------------------------------CC--cch------------HHHHHHHHHHHhhcCCCCcEEE
Q 014085 233 ---------------------------------------PE--PDY------------LDATLITIFQVHLDEAPGDILV 259 (431)
Q Consensus 233 ---------------------------------------~~--~~~------------~~~~~~~~~~~~~~~~~~~~lV 259 (431)
+. ... .......+.+.+....++++||
T Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lv 354 (472)
T 2fwr_A 275 ERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIII 354 (472)
T ss_dssp HHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCC
T ss_pred HHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEE
Confidence 00 000 0011233344444456789999
Q ss_pred EcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCc
Q 014085 260 FLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPG 339 (431)
Q Consensus 260 F~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~ 339 (431)
||++++.++.+++.|. +..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 355 F~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~-- 418 (472)
T 2fwr_A 355 FTRHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI-- 418 (472)
T ss_dssp BCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--
T ss_pred EECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--
Confidence 9999999999998762 446899999999999999999999999999999999999999999998
Q ss_pred cccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCCc----EEEEeeChh
Q 014085 340 FVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGPG----KCFRLYPEN 387 (431)
Q Consensus 340 ~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G----~~~~l~~~~ 387 (431)
|| .|.+...|+||+||+||.|+| .+|.+++++
T Consensus 419 ------~~----------~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 419 ------MS----------GSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp ------EC----------CSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred ------EC----------CCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 66 477888999999999999966 355556543
No 47
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=5e-32 Score=273.85 Aligned_cols=294 Identities=14% Similarity=0.071 Sum_probs=186.0
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeE
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRV 91 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~ 91 (431)
.+.++++|.+++..+..++++++++|||+|||.++..++..... ..+.+++++.|++.++.|+.+.+.++.... ...+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~-~~~v 188 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRLFS-HAMI 188 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHH-HCSSEEEEEESSHHHHHHHHHHHHHTTSSC-GGGE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHh-CCCCeEEEEECcHHHHHHHHHHHHHhhcCC-ccce
Confidence 45889999999999999999999999999999665444443222 223378888999999999999887653321 1111
Q ss_pred eEeEeecC-----------CCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccccCCCCCC
Q 014085 92 GYSIRFDD-----------RTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNG 158 (431)
Q Consensus 92 ~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (431)
+...+... ...+.. .+... ..+.+++++|+||||..... .+ ..
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~---~l~~~~~~~~~~~~liIiDE~H~~~~~--~~----~~--------------- 244 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQ---TVVKQPKEWFSQFGMMMNDECHLATGK--SI----SS--------------- 244 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHH---HHTTSCGGGGGGEEEEEEETGGGCCHH--HH----HH---------------
T ss_pred EEEecCCccccccccCCcEEEEeHH---HHhhchhhhhhcCCEEEEECCcCCCcc--cH----HH---------------
Confidence 11111100 011111 22222 34678999999999964431 11 11
Q ss_pred CCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--H---HHhhhCCCceEEecC-------ceeeee
Q 014085 159 NNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--G---FSEYFGCAKAVHVQG-------RQFPVE 226 (431)
Q Consensus 159 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~---l~~~~~~~~~~~~~~-------~~~~~~ 226 (431)
+.....+..++++||||+... . +..+++. ..+.+.. ...+..
T Consensus 245 -------------------------il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 298 (510)
T 2oca_A 245 -------------------------IISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELK 298 (510)
T ss_dssp -------------------------HGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCS-EECCCCCC---------CCE
T ss_pred -------------------------HHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCce
Confidence 111111456899999999222 1 2234432 1111111 011111
Q ss_pred Eee--ecCCC--------cchHH------------HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcC
Q 014085 227 ILY--TLYPE--------PDYLD------------ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEA 284 (431)
Q Consensus 227 ~~~--~~~~~--------~~~~~------------~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~ 284 (431)
... ...+. ..+.. ..+.............++|||++ .++++.+++.|.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~------- 370 (510)
T 2oca_A 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE------- 370 (510)
T ss_dssp EEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT-------
T ss_pred EEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc-------
Confidence 110 00100 11111 11111122222223445677766 89999999998875
Q ss_pred CCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEec-CccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHH
Q 014085 285 SRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT-NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKA 363 (431)
Q Consensus 285 ~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT-~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~ 363 (431)
+..+..+||+++.++|..+++.|++|+.+||||| +++++|+|+|++++||. |+ .|.+..
T Consensus 371 --~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~----------~~~s~~ 430 (510)
T 2oca_A 371 --YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AH----------GVKSKI 430 (510)
T ss_dssp --CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SS----------CCCSCC
T ss_pred --CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eC----------CCCCHH
Confidence 5578999999999999999999999999999999 99999999999999998 55 467778
Q ss_pred HHHHhhcccCCCCCc-EEEEeeC
Q 014085 364 QALQRSGRAGREGPG-KCFRLYP 385 (431)
Q Consensus 364 ~~~qr~GR~gR~~~G-~~~~l~~ 385 (431)
+|+||+||+||.|+| .++.+++
T Consensus 431 ~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 431 IVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHhcccccCCCCceEEEEE
Confidence 899999999999954 3666654
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=9.7e-32 Score=290.56 Aligned_cols=271 Identities=14% Similarity=0.127 Sum_probs=161.3
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccC
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELG 88 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~ 88 (431)
....+++ ++|+++++.+..|++++++||||||||. +...+..... ..+..++++.|++.++.|+.+.+..+.... +
T Consensus 52 ~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~-~~~~~~lil~PtreLa~Q~~~~l~~l~~~~-~ 127 (1054)
T 1gku_B 52 KCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLA-LKGKRCYVIFPTSLLVIQAAETIRKYAEKA-G 127 (1054)
T ss_dssp TTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHH-TTSCCEEEEESCHHHHHHHHHHHHHHHTTT-C
T ss_pred HhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHh-hcCCeEEEEeccHHHHHHHHHHHHHHHhhc-C
Confidence 3445567 9999999999999999999999999994 3333322221 235578889999999999999888776432 2
Q ss_pred C----eEeEeEee----------------cCCCChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhh
Q 014085 89 Q----RVGYSIRF----------------DDRTSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNAR 148 (431)
Q Consensus 89 ~----~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~ 148 (431)
. .++...+. +....++.++...+.. +.+++++|+||||+...+...+..++..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~~~~~~~~i~~~l---- 201 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILKASKNVDKLLHLL---- 201 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHTSTHHHHHHHHHT----
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhhccccHHHHHHHh----
Confidence 2 22221111 1112233333333332 66899999999995332222222222211
Q ss_pred ccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh-HHHH-hhhCCCceEEecCce---e
Q 014085 149 SKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA-RGFS-EYFGCAKAVHVQGRQ---F 223 (431)
Q Consensus 149 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~-~~l~-~~~~~~~~~~~~~~~---~ 223 (431)
++...... .......+++++|||++. +.+. .++.+...+.+.... .
T Consensus 202 -----------------------gf~~~~~~------~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~ 252 (1054)
T 1gku_B 202 -----------------------GFHYDLKT------KSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVR 252 (1054)
T ss_dssp -----------------------TEEEETTT------TEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCC
T ss_pred -----------------------Ccchhhhh------hhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcC
Confidence 11000000 011145678999999933 2222 222211111222111 1
Q ss_pred eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
.+...+......+.+. ...... ++++||||+|+++|+.++..|.+ .+.+..+||++ .
T Consensus 253 ~i~~~~~~~~k~~~L~-------~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~----------~~~v~~lhg~~-----~ 309 (1054)
T 1gku_B 253 NVEDVAVNDESISTLS-------SILEKL-GTGGIIYARTGEEAEEIYESLKN----------KFRIGIVTATK-----K 309 (1054)
T ss_dssp CEEEEEESCCCTTTTH-------HHHTTS-CSCEEEEESSHHHHHHHHHTTTT----------SSCEEECTTSS-----S
T ss_pred CceEEEechhHHHHHH-------HHHhhc-CCCEEEEEcCHHHHHHHHHHHhh----------ccCeeEEeccH-----H
Confidence 2333333222222222 222222 57899999999999999998755 26789999998 4
Q ss_pred hhhCcCCCCCcEEEEe----cCccccccccCCc-EEEEeCccc
Q 014085 304 RVFAPAAAGFRKVILA----TNIAETSVTIPGI-KYVIDPGFV 341 (431)
Q Consensus 304 ~i~~~f~~g~~~vLva----T~~~~~Gvdip~v-~~VI~~~~~ 341 (431)
.+++.|++|+.+|||| |+++++|+|+|+| ++||++|+.
T Consensus 310 ~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 310 GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 6788899999999999 9999999999995 999997765
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=1.1e-29 Score=260.03 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=119.7
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCceeeee------EeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVE------ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ 264 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~ 264 (431)
++.+||+|. ..+.+.+.++- .++.++.. .|.. ..+. ...+....++..+.... ..+.++||||+|+
T Consensus 369 kl~GmTGTa~te~~e~~~iY~l-~vv~IPtn-~p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~--~~~~pvLVft~s~ 442 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYNM-QVVTIPTN-RPVVRDDRPDLIYR--TMEGKFKAVAEDVAQRY--MTGQPVLVGTVAV 442 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHCC-CEEECCCS-SCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESCH
T ss_pred hhccCCcccchhHHHHHHHhCC-ceEEecCC-CCcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCH
Confidence 578899999 44455566653 34444322 1111 1221 11222222222222222 2356799999999
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccC--------CcEEEE
Q 014085 265 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVI 336 (431)
Q Consensus 265 ~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip--------~v~~VI 336 (431)
+.++.++..|.+. |+.+..+||++.+.+|..+.+.++.| .|+||||+++||+||+ ++.+||
T Consensus 443 ~~se~Ls~~L~~~---------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VI 511 (844)
T 1tf5_A 443 ETSELISKLLKNK---------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVV 511 (844)
T ss_dssp HHHHHHHHHHHTT---------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEE
T ss_pred HHHHHHHHHHHHC---------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEE
Confidence 9999999999987 99999999999999998787777766 6999999999999999 899999
Q ss_pred eCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 337 DPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 337 ~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
+ || .|.+...|+||+|||||.| +|.++.+++.+|
T Consensus 512 n--------~d----------~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 512 G--------TE----------RHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp E--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred E--------ec----------CCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 9 66 6999999999999999999 999999998664
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=5.8e-30 Score=263.10 Aligned_cols=299 Identities=18% Similarity=0.116 Sum_probs=167.8
Q ss_pred CChHHHHHHHHHHHhC-----CCEEEEEcCCCCChhccHhHHhhhccccc-------CCcEEEEeCchhHHHHHHh-HHH
Q 014085 13 LPIASVEKRLVEEVRK-----NDILIIVGETGSGKTTQLPQFLFHAGFCR-------DGKLIGVTQPRRVAAVTVA-KRV 79 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~-----g~~~vi~apTGsGKT~~~~~~~~~~~~~~-------~~~~v~v~~p~~~l~~~~~-~~~ 79 (431)
..++++|.+++..+.+ ++++++++|||||||.++..++....... .+.+++++.|++.++.|.. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4789999999998875 46799999999999955444443322222 4568999999999998887 443
Q ss_pred HHHhCCccCCeEeEeE--eecCCCChhHhHHHH------hcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccc
Q 014085 80 AEESGVELGQRVGYSI--RFDDRTSTSTRIKEA------LLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (431)
Q Consensus 80 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~ 151 (431)
..+ +.......+... .......+...+... ........+++||+||||......
T Consensus 257 ~~~-~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----------------- 318 (590)
T 3h1t_A 257 TPF-GDARHKIEGGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----------------- 318 (590)
T ss_dssp TTT-CSSEEECCC--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------------------
T ss_pred Hhc-chhhhhhhccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-----------------
Confidence 322 211100000000 000111122222211 112224579999999999422110
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCC---ChHHHHhhhCCCceEEec-------Cc
Q 014085 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASL---DARGFSEYFGCAKAVHVQ-------GR 221 (431)
Q Consensus 152 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~---~~~~l~~~~~~~~~~~~~-------~~ 221 (431)
...+...+..+ +..++++||||+ +......+++... .... +.
T Consensus 319 ----------------------~~~~~~il~~~-----~~~~~l~lTATP~~~~~~~~~~~f~~~~-~~~~~~~~i~~~~ 370 (590)
T 3h1t_A 319 ----------------------NSNWREILEYF-----EPAFQIGMTATPLREDNRDTYRYFGNPI-YTYSLRQGIDDGF 370 (590)
T ss_dssp -------------------------CHHHHHHS-----TTSEEEEEESSCSCTTTHHHHHHSCSCS-EEECHHHHHHHTS
T ss_pred ----------------------hHHHHHHHHhC-----CcceEEEeccccccccchhHHHHcCCce-EecCHHHHhhCCc
Confidence 01112222222 346799999999 3344556665432 1111 00
Q ss_pred eeeeeEeeecC--------------------------CCcc---------hHHHHHHHHHHHhhc-CCCCcEEEEcCCHH
Q 014085 222 QFPVEILYTLY--------------------------PEPD---------YLDATLITIFQVHLD-EAPGDILVFLTGQE 265 (431)
Q Consensus 222 ~~~~~~~~~~~--------------------------~~~~---------~~~~~~~~~~~~~~~-~~~~~~lVF~~s~~ 265 (431)
..+........ ...+ ....+...+...... .+.+++||||++++
T Consensus 371 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~ 450 (590)
T 3h1t_A 371 LAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQE 450 (590)
T ss_dssp SCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHH
T ss_pred cCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHH
Confidence 11111111000 0000 011112223222222 34578999999999
Q ss_pred HHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcE---EEEecCccccccccCCcEEEEeCcccc
Q 014085 266 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRK---VILATNIAETSVTIPGIKYVIDPGFVK 342 (431)
Q Consensus 266 ~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~---vLvaT~~~~~Gvdip~v~~VI~~~~~~ 342 (431)
+|+.+++.|.+......... +-.+..+||+++. +|+.+++.|++|+.+ |||||+++++|+|+|++++||+
T Consensus 451 ~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----- 523 (590)
T 3h1t_A 451 HADEMRRALNNLNSDLSRKH-PDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----- 523 (590)
T ss_dssp HHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE-----
T ss_pred HHHHHHHHHHHhhhhhhccC-CCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE-----
Confidence 99999999988643211111 1236778999764 799999999998866 8999999999999999999998
Q ss_pred ceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC
Q 014085 343 ARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP 377 (431)
Q Consensus 343 ~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~ 377 (431)
|+ .|.+...|+||+||+||.++
T Consensus 524 ---~~----------~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 524 ---AR----------VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp ---ES----------CCCCHHHHHHHHTTSCCCBG
T ss_pred ---Ee----------cCCChHHHHHHHhhhcccCc
Confidence 66 57899999999999999874
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=3.9e-28 Score=247.90 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=97.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCC-
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPG- 331 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~- 331 (431)
.+.++||||+|++.++.++..|.+. |+.+.++||+..+.++..+.+.|+.| .|+||||+++||+||+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 4668999999999999999999997 99999999999999999999999988 69999999999999987
Q ss_pred -------------------------------c-----EEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCC
Q 014085 332 -------------------------------I-----KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGRE 375 (431)
Q Consensus 332 -------------------------------v-----~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~ 375 (431)
| .+||+ || .|.|...|.||+||+||.
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te----------~pes~riy~qr~GRTGRq 570 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TE----------RHESRRIDNQLRGRSGRQ 570 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SS----------CCSSHHHHHHHHTTSSGG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------cc----------CCCCHHHHHhhccccccC
Confidence 4 69999 55 599999999999999999
Q ss_pred C-CcEEEEeeChhh
Q 014085 376 G-PGKCFRLYPENE 388 (431)
Q Consensus 376 ~-~G~~~~l~~~~~ 388 (431)
| +|.++.+++.++
T Consensus 571 Gd~G~s~~fls~eD 584 (853)
T 2fsf_A 571 GDAGSSRFYLSMED 584 (853)
T ss_dssp GCCEEEEEEEETTS
T ss_pred CCCeeEEEEecccH
Confidence 9 999999987654
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=2e-26 Score=235.69 Aligned_cols=163 Identities=20% Similarity=0.220 Sum_probs=121.4
Q ss_pred ceEEEEcCCC--ChHHHHhhhCCCceEEecCceeeee-----EeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCH
Q 014085 192 LKLIIMSASL--DARGFSEYFGCAKAVHVQGRQFPVE-----ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQ 264 (431)
Q Consensus 192 ~~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~ 264 (431)
.++.+||+|. ..+.+.+.++ ..++.++....... ..|. ...+....++..+.... ..+.++||||+|+
T Consensus 396 ~kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtn~p~~R~d~~d~v~~--t~~~K~~al~~~i~~~~--~~gqpvLVft~Si 470 (922)
T 1nkt_A 396 DKLAGMTGTAQTEAAELHEIYK-LGVVSIPTNMPMIREDQSDLIYK--TEEAKYIAVVDDVAERY--AKGQPVLIGTTSV 470 (922)
T ss_dssp SEEEEEESCCGGGHHHHHHHHC-CEEEECCCSSCCCCEECCCEEES--CHHHHHHHHHHHHHHHH--HTTCCEEEEESCH
T ss_pred hhhhccccCchhHHHHHHHHhC-CCeEEeCCCCCcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCH
Confidence 3788999999 4456667665 33555553211111 1121 11222222222222222 2356899999999
Q ss_pred HHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCc------------
Q 014085 265 EEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGI------------ 332 (431)
Q Consensus 265 ~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v------------ 332 (431)
+.++.++..|.+. |+.+..+||+....++..+.+.|+.| .|+||||+++||+||+.+
T Consensus 471 e~sE~Ls~~L~~~---------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~ 539 (922)
T 1nkt_A 471 ERSEYLSRQFTKR---------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLR 539 (922)
T ss_dssp HHHHHHHHHHHHT---------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHh
Confidence 9999999999997 99999999999888888888999888 699999999999999864
Q ss_pred ----------------------------------------EEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhccc
Q 014085 333 ----------------------------------------KYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRA 372 (431)
Q Consensus 333 ----------------------------------------~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~ 372 (431)
.+||+ || .|.|...|.||+||+
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te----------~pes~riy~qr~GRT 601 (922)
T 1nkt_A 540 ERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TE----------RHESRRIDNQLRGRS 601 (922)
T ss_dssp HTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CS----------CCSSHHHHHHHHHTS
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------cc----------CCCCHHHHHHHhccc
Confidence 69999 55 599999999999999
Q ss_pred CCCC-CcEEEEeeChhh
Q 014085 373 GREG-PGKCFRLYPENE 388 (431)
Q Consensus 373 gR~~-~G~~~~l~~~~~ 388 (431)
||.| +|.++.+++.+|
T Consensus 602 GRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 602 GRQGDPGESRFYLSLGD 618 (922)
T ss_dssp SGGGCCEEEEEEEETTS
T ss_pred ccCCCCeeEEEEechhH
Confidence 9999 999999987653
No 53
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2.9e-28 Score=217.01 Aligned_cols=152 Identities=22% Similarity=0.388 Sum_probs=131.5
Q ss_pred HHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccc
Q 014085 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE 324 (431)
Q Consensus 245 ~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~ 324 (431)
+...+...+++++||||+++++++.++..|.+. ++.+..+||+|++++|..+++.|++|+.+|||||++++
T Consensus 22 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 22 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp HHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 333334455789999999999999999999987 89999999999999999999999999999999999999
Q ss_pred cccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh--------------h
Q 014085 325 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE--------------F 389 (431)
Q Consensus 325 ~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~--------------~ 389 (431)
+|+|+|++++||+ || .|.+...|+||+||+||.| +|.|+.++++++ +
T Consensus 93 ~Gidi~~v~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 93 RGLDIPQVDLVVH--------YR----------LPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp CSSSCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred cCCCCccCcEEEE--------CC----------CCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 9999999999999 55 4889999999999999999 999999999876 3
Q ss_pred hcCcCCCCCceeccCchHHHHHHHHcCCCCCccc
Q 014085 390 DKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF 423 (431)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~ 423 (431)
..+.....+++.+..+..+++.++.+...+...|
T Consensus 155 ~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~ 188 (212)
T 3eaq_A 155 KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 188 (212)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTT
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3355666678888889999999998877555444
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.94 E-value=3.2e-27 Score=253.64 Aligned_cols=118 Identities=18% Similarity=0.192 Sum_probs=101.0
Q ss_pred HHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCC--cEEEEec
Q 014085 243 ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGF--RKVILAT 320 (431)
Q Consensus 243 ~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~--~~vLvaT 320 (431)
..+...+...+++++||||+++..++.++..|.+. .++.+..+||+|++++|..+++.|++|+ .+|||||
T Consensus 492 ~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 492 EWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp HHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred HHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 33444444456789999999999999999999852 1888999999999999999999999998 9999999
Q ss_pred CccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcE--EEEeeCh
Q 014085 321 NIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGK--CFRLYPE 386 (431)
Q Consensus 321 ~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~--~~~l~~~ 386 (431)
+++++|+|+|++++||+ || .|.+...|+||+||+||.| .|. +|.++..
T Consensus 564 ~v~~~GlDl~~~~~VI~--------~d----------~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~ 614 (968)
T 3dmq_A 564 EIGSEGRNFQFASHMVM--------FD----------LPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLE 614 (968)
T ss_dssp CCTTCSSCCTTCCEEEC--------SS----------CCSSHHHHHHHHHTTSCSSSCSCCEEEEEEET
T ss_pred chhhcCCCcccCcEEEE--------ec----------CCCCHHHHHHHhhccccCCCCceEEEEEecCC
Confidence 99999999999999998 66 5889999999999999999 664 4444443
No 55
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2.6e-27 Score=220.74 Aligned_cols=166 Identities=21% Similarity=0.339 Sum_probs=133.2
Q ss_pred EeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhh
Q 014085 227 ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVF 306 (431)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~ 306 (431)
.++...+..+..+.+ .+.+....++++||||+|+++++.++..|.+. ++.+..+||+|++.+|..++
T Consensus 5 ~~~i~~~~~~K~~~L----~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 5 EEAVPAPVRGRLEVL----SDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp EEEEECCSSSHHHHH----HHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHHHH
T ss_pred EEEEECCHHHHHHHH----HHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHH
Confidence 344444444444333 33333344789999999999999999999876 89999999999999999999
Q ss_pred CcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeC
Q 014085 307 APAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYP 385 (431)
Q Consensus 307 ~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~ 385 (431)
+.|++|+.+|||||+++++|+|+|++++||+ || .|.+...|+||+|||||.| +|.|+.+++
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d----------~p~s~~~y~Qr~GRagR~g~~G~~i~l~~ 133 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YR----------MPDRAEAYQHRSGRTGRAGRGGRVVLLYG 133 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SS----------CCSSTTHHHHHHTCCC-----CEEEEEEC
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE--------cC----------CCCCHHHHHHHccCcCcCCCCceEEEEeC
Confidence 9999999999999999999999999999999 55 4888999999999999999 999999998
Q ss_pred hhh--------------hhcCcCCCCCceeccCchHHHHHHHHcCCCCCccc
Q 014085 386 ENE--------------FDKLEDSTKPEIKRCNLSNVILQLKALGVDDIIGF 423 (431)
Q Consensus 386 ~~~--------------~~~~~~~~~~~~~~~~l~~~~l~l~~~~~~~~~~~ 423 (431)
+++ ++.+.....+++.+..+..+++.++.++..+...|
T Consensus 134 ~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f 185 (300)
T 3i32_A 134 PRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLY 185 (300)
T ss_dssp SSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 776 33456666778999999999999988766554444
No 56
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.93 E-value=1.4e-25 Score=226.08 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=90.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcE-EEEecCccccccccC
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 330 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~-vLvaT~~~~~Gvdip 330 (431)
++.++||||+++..++.++..|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 46789999999999999999998742 67788899999999999999999988 555 799999999999999
Q ss_pred CcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC---cEEEEeeChh
Q 014085 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPEN 387 (431)
Q Consensus 331 ~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~---G~~~~l~~~~ 387 (431)
++++||+ || .|.+...|.||+||++|.|+ ..+|++++..
T Consensus 412 ~~~~vi~--------~d----------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 412 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp TCSEEEE--------SS----------CCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred hCCEEEE--------eC----------CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999998 76 47788889999999999992 3467777654
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.92 E-value=1.5e-24 Score=231.45 Aligned_cols=307 Identities=11% Similarity=0.018 Sum_probs=184.9
Q ss_pred CChHHHHHHHHHHHhC--------------CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHH
Q 014085 13 LPIASVEKRLVEEVRK--------------NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~--------------g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
..++++|.+++..+.+ +++.+++++||||||..+..++..........++++++|++.|+.|..+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 4588999999998765 36799999999999955422222211112245899999999999999887
Q ss_pred HHHHhCCccCCeEeE--------eEeecCCCChhHhHHHHhcc----cCCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 79 VAEESGVELGQRVGY--------SIRFDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 79 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
+..+....+...... .......+.+..++...+.. +.+....++|+||||.... ... .+.+..
T Consensus 350 f~~f~~~~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~-~~~----~~~I~~ 424 (1038)
T 2w00_A 350 YQRFSPDSVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF-GEA----QKNLKK 424 (1038)
T ss_dssp HHTTSTTCSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-HHH----HHHHHH
T ss_pred HHHhcccccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-hHH----HHHHHH
Confidence 765543211100000 00011122333333333221 2355789999999996332 111 111111
Q ss_pred hhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh-------HHHHhhhCCCceEEec
Q 014085 147 ARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA-------RGFSEYFGCAKAVHVQ 219 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~-------~~l~~~~~~~~~~~~~ 219 (431)
.- ++.++++|||||.. +...++||.. +....
T Consensus 425 ~~-----------------------------------------p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~ 462 (1038)
T 2w00_A 425 KF-----------------------------------------KRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYV 462 (1038)
T ss_dssp HC-----------------------------------------SSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEEC
T ss_pred hC-----------------------------------------CcccEEEEeCCccccccchhhhHHHHHhCCe-eEeec
Confidence 10 56789999999922 2455667643 11111
Q ss_pred -------CceeeeeEeeecCC-------------------------CcchHHHHHHHHHHHhhc--------CCCCcEEE
Q 014085 220 -------GRQFPVEILYTLYP-------------------------EPDYLDATLITIFQVHLD--------EAPGDILV 259 (431)
Q Consensus 220 -------~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~--------~~~~~~lV 259 (431)
+...|+.+.+.... .......+...+...... ..+.++||
T Consensus 463 l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamV 542 (1038)
T 2w00_A 463 ITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAML 542 (1038)
T ss_dssp HHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEE
T ss_pred HHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 22233333332110 011122222223232211 12457999
Q ss_pred EcCCHHHHHHHHHHHHHHHhcC---CcCCCceEE-EEcCCC----------C----------CH----------------
Q 014085 260 FLTGQEEIESVERLVQERLLQL---PEASRKLVT-VPIFSS----------L----------PS---------------- 299 (431)
Q Consensus 260 F~~s~~~~~~l~~~l~~~~~~~---~~~~~~~~v-~~lhg~----------~----------~~---------------- 299 (431)
||+|+.+|..++..|.+..... .....++.+ ..+||+ + ++
T Consensus 543 f~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~ 622 (1038)
T 2w00_A 543 AVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSH 622 (1038)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999998875321 011122333 456653 2 22
Q ss_pred -------------HHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHH
Q 014085 300 -------------EQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQAL 366 (431)
Q Consensus 300 -------------~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~ 366 (431)
.+|..++++|++|+++|||+|+++.+|+|+|.+++++ +| .|.+...|+
T Consensus 623 f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly---------lD----------kpl~~~~li 683 (1038)
T 2w00_A 623 FKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF---------VD----------KNLRYHGLM 683 (1038)
T ss_dssp HTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE---------EE----------SCCCHHHHH
T ss_pred hcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE---------Ec----------cCCCcccee
Confidence 1478889999999999999999999999999996655 66 578888999
Q ss_pred HhhcccCCCCC-----cEEEEeeC
Q 014085 367 QRSGRAGREGP-----GKCFRLYP 385 (431)
Q Consensus 367 qr~GR~gR~~~-----G~~~~l~~ 385 (431)
||+||++|.++ |.++.+..
T Consensus 684 QaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 684 QAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999873 66776664
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=1.8e-23 Score=215.82 Aligned_cols=167 Identities=16% Similarity=0.172 Sum_probs=123.3
Q ss_pred CceEEEEcCCCChHHHHhhhCCCceEEecCc----eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 014085 191 PLKLIIMSASLDARGFSEYFGCAKAVHVQGR----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (431)
Q Consensus 191 ~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~ 266 (431)
..+++++|||+....+.. . ...+....+ ..|. +... +.......++..+..... .+.++||||+|+..
T Consensus 380 ~~q~i~~SAT~~~~~~~~--~-~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~~--~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH--S-GRVVEQIIRPTGLLDPL-VRVK--PTENQILDLMEGIRERAA--RGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH--C-SEEEEECSCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHHH--TTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh--h-hCeeeeeeccCCCCCCe-EEEe--cccchHHHHHHHHHHHHh--cCCEEEEEECCHHH
Confidence 458899999996554432 0 111111111 0111 1111 112233344444433322 36789999999999
Q ss_pred HHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceee
Q 014085 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 346 (431)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~ 346 (431)
|+.++..|.+. ++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+ |
T Consensus 452 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~--------~ 514 (664)
T 1c4o_A 452 AEELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI--------L 514 (664)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE--------T
T ss_pred HHHHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEE--------e
Confidence 99999999987 888999999999999999999999999999999999999999999999999 4
Q ss_pred cCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChh
Q 014085 347 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (431)
Q Consensus 347 d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~ 387 (431)
|.... + .|.+..+|+||+|||||.++|.|+.++++.
T Consensus 515 d~d~~--G---~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 515 DADKE--G---FLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp TTTSC--S---GGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred CCccc--C---CCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 43211 1 378999999999999999999999998753
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.91 E-value=5.4e-23 Score=206.13 Aligned_cols=162 Identities=20% Similarity=0.274 Sum_probs=118.6
Q ss_pred eEEEEcCCC--ChHHHHhhhCCCceEEecCcee--eee---EeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHH
Q 014085 193 KLIIMSASL--DARGFSEYFGCAKAVHVQGRQF--PVE---ILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQE 265 (431)
Q Consensus 193 ~~v~lSAT~--~~~~l~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~ 265 (431)
++.+||+|+ ..+.+.+.++ ..++.++.... ... ..+. ...+....++..+.... ..+.++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~--t~~eK~~al~~~I~~~~--~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFR--TQKEKYEKIVEEIEKRY--KKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC-CCEEECCCSSCCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhC-CeEEEECCCCCcceeecCcEEEe--cHHHHHHHHHHHHHHHh--hCCCCEEEEECCHH
Confidence 689999999 4455666665 34555543211 111 1111 11222223333333222 23678999999999
Q ss_pred HHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccC--------CcEEEEe
Q 014085 266 EIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIP--------GIKYVID 337 (431)
Q Consensus 266 ~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip--------~v~~VI~ 337 (431)
.++.++..|.+. |+.+..+||+..+.++..+...++.| .|+||||+++||+||+ +..+||+
T Consensus 486 ~sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn 554 (822)
T 3jux_A 486 KSELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554 (822)
T ss_dssp HHHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE
T ss_pred HHHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe
Confidence 999999999987 99999999997776776666677666 5999999999999998 6679999
Q ss_pred CccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhh
Q 014085 338 PGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENE 388 (431)
Q Consensus 338 ~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~ 388 (431)
|+ .|.+...|+||+|||||.| +|.++.+++.+|
T Consensus 555 --------te----------~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 --------TE----------RHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp --------SS----------CCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred --------cC----------CCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 55 5999999999999999999 999999998764
No 60
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.91 E-value=2.9e-24 Score=183.12 Aligned_cols=134 Identities=23% Similarity=0.399 Sum_probs=113.6
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~ 304 (431)
++..+...+..+.... +...+...+.+++||||+++++++.++..|.+. ++.+..+||+|++.+|..
T Consensus 10 i~~~~~~~~~~~K~~~----L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 10 IEHAVIQVREENKFSL----LKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp EEEEEEECCGGGHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEECChHHHHHH----HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 4444544444443333 333333345778999999999999999999886 889999999999999999
Q ss_pred hhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 305 i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.+
T Consensus 77 ~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YD----------LPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp HHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SS----------CCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred HHHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eC----------CCCCHHHHHHhccccCcCCCCceEEEE
Confidence 999999999999999999999999999999999 65 5889999999999999999 9999999
Q ss_pred eChhhh
Q 014085 384 YPENEF 389 (431)
Q Consensus 384 ~~~~~~ 389 (431)
+++.+.
T Consensus 139 ~~~~~~ 144 (163)
T 2hjv_A 139 VTAFEK 144 (163)
T ss_dssp ECGGGH
T ss_pred ecHHHH
Confidence 987754
No 61
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.5e-24 Score=184.21 Aligned_cols=142 Identities=17% Similarity=0.261 Sum_probs=111.3
Q ss_pred eeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 224 PVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
.+...+...+..+ .....+...+...+.+++||||+++++|+.++..|.+. ++.+..+||+|++.+|.
T Consensus 7 ~i~q~~~~~~~~~---~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRK---DKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHH---HHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChH---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 3445554443322 23444555555566789999999999999999999886 88999999999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~ 382 (431)
.+++.|++|+.+|||||+++++|+|+|++++||+ ||.+.+.. ...+..+|+||+||+||.| +|.|+.
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~--------~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~ 142 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN--------FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFN 142 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE--------SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEE
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE--------eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEE
Confidence 9999999999999999999999999999999999 66321100 0189999999999999998 999999
Q ss_pred eeChhhh
Q 014085 383 LYPENEF 389 (431)
Q Consensus 383 l~~~~~~ 389 (431)
++++.+.
T Consensus 143 ~~~~~~~ 149 (175)
T 2rb4_A 143 MIEVDEL 149 (175)
T ss_dssp EECGGGH
T ss_pred EEccchH
Confidence 9987754
No 62
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=3.4e-23 Score=213.88 Aligned_cols=109 Identities=13% Similarity=0.245 Sum_probs=97.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCc---EEEEecCccccccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVT 328 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~---~vLvaT~~~~~Gvd 328 (431)
.++.++|||++++..++.++..|... ++.+..+||+++.++|..+++.|++|.. .+|++|++++.|+|
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNR---------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH---------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHC---------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 34678999999999999999999887 8999999999999999999999998865 48999999999999
Q ss_pred cCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCCC---cEEEEeeChh
Q 014085 329 IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREGP---GKCFRLYPEN 387 (431)
Q Consensus 329 ip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~---G~~~~l~~~~ 387 (431)
++++++||+ || .|.++..+.|++||++|.|+ ..+|++++..
T Consensus 485 l~~a~~Vi~--------~d----------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 485 LIGANRLVM--------FD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp CTTEEEEEE--------CS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred cccCCEEEE--------EC----------CCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 999999998 77 58899999999999999993 3577777654
No 63
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=8e-24 Score=181.91 Aligned_cols=132 Identities=18% Similarity=0.368 Sum_probs=112.6
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~ 304 (431)
+..++...+..+... .+.+.+...+.+++||||++++.|+.++..|.+. ++.+..+||+|++.+|..
T Consensus 6 i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 6 LQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred eEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHHH
Confidence 444454444444333 3334444456789999999999999999999886 889999999999999999
Q ss_pred hhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 305 i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d----------~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SS----------CCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999 66 5889999999999999999 8999999
Q ss_pred eChh
Q 014085 384 YPEN 387 (431)
Q Consensus 384 ~~~~ 387 (431)
+++.
T Consensus 135 ~~~~ 138 (172)
T 1t5i_A 135 VSDE 138 (172)
T ss_dssp ECSH
T ss_pred EcCh
Confidence 9864
No 64
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.89 E-value=6.8e-24 Score=181.25 Aligned_cols=116 Identities=19% Similarity=0.449 Sum_probs=101.6
Q ss_pred HHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccc
Q 014085 247 QVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETS 326 (431)
Q Consensus 247 ~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~G 326 (431)
......+.+++||||+++++++.++..|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 93 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 3333345788999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhhh
Q 014085 327 VTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEF 389 (431)
Q Consensus 327 vdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~~ 389 (431)
+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.++++++.
T Consensus 94 ~d~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 94 IDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp CCCCSCSEEEE--------SS----------CCSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred CCcccCCEEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 99999999999 65 4888999999999999998 9999999987654
No 65
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=181.50 Aligned_cols=135 Identities=20% Similarity=0.320 Sum_probs=99.5
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcC-CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDE-APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQM 303 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~ 303 (431)
+...+...+..+....+. +.+... +.+++||||++++.|+.++..|... ++.+..+||+|++.+|.
T Consensus 20 i~q~~~~v~~~~K~~~L~----~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 20 ITQKVVWVEESDKRSFLL----DLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDRE 86 (185)
T ss_dssp EEEEEEECCGGGHHHHHH----HHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------C
T ss_pred ceEEEEEeCcHHHHHHHH----HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHHH
Confidence 444454444444433332 222222 4678999999999999999999886 88999999999999999
Q ss_pred hhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEE
Q 014085 304 RVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFR 382 (431)
Q Consensus 304 ~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~ 382 (431)
.+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d----------~p~s~~~~~Qr~GR~~R~g~~g~~~~ 148 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATS 148 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SS----------CCSSHHHHHHHHTTBCCTTSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999 66 5889999999999999999 999999
Q ss_pred eeChhhhh
Q 014085 383 LYPENEFD 390 (431)
Q Consensus 383 l~~~~~~~ 390 (431)
++++.+..
T Consensus 149 ~~~~~~~~ 156 (185)
T 2jgn_A 149 FFNERNIN 156 (185)
T ss_dssp EECGGGGG
T ss_pred EEchhhHH
Confidence 99877643
No 66
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.8e-23 Score=182.66 Aligned_cols=131 Identities=20% Similarity=0.366 Sum_probs=109.0
Q ss_pred eeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhh
Q 014085 225 VEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMR 304 (431)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~ 304 (431)
+...+...+..+... .+.+.+... ++++||||++++.++.++..|.+. ++.+..+||++++++|..
T Consensus 30 i~q~~~~~~~~~K~~----~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~ 95 (191)
T 2p6n_A 30 VIQEVEYVKEEAKMV----YLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERTK 95 (191)
T ss_dssp SEEEEEECCGGGHHH----HHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHHH
T ss_pred ceEEEEEcChHHHHH----HHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHH
Confidence 444444444433333 333443332 568999999999999999999987 899999999999999999
Q ss_pred hhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEe
Q 014085 305 VFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRL 383 (431)
Q Consensus 305 i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l 383 (431)
+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+..+|+||+||+||.| +|.|+.|
T Consensus 96 ~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d----------~p~~~~~~~qr~GR~gR~g~~g~~i~l 157 (191)
T 2p6n_A 96 AIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YD----------MPEEIENYVHRIGRTGCSGNTGIATTF 157 (191)
T ss_dssp HHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SS----------CCSSHHHHHHHHTTSCC---CCEEEEE
T ss_pred HHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhCccccCCCCcEEEEE
Confidence 999999999999999999999999999999999 66 5889999999999999999 9999999
Q ss_pred eChh
Q 014085 384 YPEN 387 (431)
Q Consensus 384 ~~~~ 387 (431)
+++.
T Consensus 158 ~~~~ 161 (191)
T 2p6n_A 158 INKA 161 (191)
T ss_dssp ECTT
T ss_pred EcCc
Confidence 9864
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.5e-22 Score=214.08 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=97.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCc---EEEEecCcccccccc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFR---KVILATNIAETSVTI 329 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~---~vLvaT~~~~~Gvdi 329 (431)
.+.++||||..+..++.+...|... ++.+..+||+++.++|..+++.|+++.. .+|++|.+++.|+|+
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc
Confidence 4678999999999999999999887 8999999999999999999999998654 499999999999999
Q ss_pred CCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC---CcEEEEeeChh
Q 014085 330 PGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG---PGKCFRLYPEN 387 (431)
Q Consensus 330 p~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~---~G~~~~l~~~~ 387 (431)
+++++||+ || .+.++..+.||+||++|.| +-.+|+|++..
T Consensus 642 ~~a~~VI~--------~D----------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 642 MTADTVVI--------FD----------SDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp TTCCEEEE--------SS----------CCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred cccceEEE--------ec----------CCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999998 77 4778888999999999999 45578888765
No 68
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=4.5e-24 Score=183.27 Aligned_cols=120 Identities=19% Similarity=0.354 Sum_probs=107.4
Q ss_pred HHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccc
Q 014085 245 IFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE 324 (431)
Q Consensus 245 ~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~ 324 (431)
+.+.+...+.+++||||+++++|+.++..|.+. ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAA 91 (170)
Confidence 334444445678999999999999999999887 88999999999999999999999999999999999999
Q ss_pred cccccCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-CcEEEEeeChhhhhc
Q 014085 325 TSVTIPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PGKCFRLYPENEFDK 391 (431)
Q Consensus 325 ~Gvdip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G~~~~l~~~~~~~~ 391 (431)
+|+|+|++++||+ || .|.+..+|+||+||+||.| .|.|+.++++.+...
T Consensus 92 ~Gid~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 92 RGIDIPDVSHVFN--------FD----------MPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLL 141 (170)
Confidence 9999999999999 65 5889999999999999999 999999998775543
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.86 E-value=1.9e-21 Score=200.64 Aligned_cols=167 Identities=18% Similarity=0.171 Sum_probs=123.1
Q ss_pred CceEEEEcCCCChHHHHhhhCCCceEEecCc----eeeeeEeeecCCCcchHHHHHHHHHHHhhcCCCCcEEEEcCCHHH
Q 014085 191 PLKLIIMSASLDARGFSEYFGCAKAVHVQGR----QFPVEILYTLYPEPDYLDATLITIFQVHLDEAPGDILVFLTGQEE 266 (431)
Q Consensus 191 ~~~~v~lSAT~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~s~~~ 266 (431)
..+++++|||+....+.. .+. .+....+ ..|. +... +.......++..+.... ..+.++||||+|+..
T Consensus 386 ~~q~i~~SAT~~~~~~~~-~~~--~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ 457 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-TDE--MVEQIIRPTGLLDPL-IDVR--PIEGQIDDLIGEIQARI--ERNERVLVTTLTKKM 457 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-CSS--CEEECCCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHH
T ss_pred CCCEEEEecCCChhHHHh-hhC--eeeeeecccCCCCCe-EEEe--cccchHHHHHHHHHHHH--hcCCeEEEEECCHHH
Confidence 468899999996554432 111 1111111 1111 1111 12223334444443332 235689999999999
Q ss_pred HHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccccccccCCcEEEEeCccccceee
Q 014085 267 IESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAETSVTIPGIKYVIDPGFVKARLY 346 (431)
Q Consensus 267 ~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~~Gvdip~v~~VI~~~~~~~~~~ 346 (431)
|+.++..|.+. ++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+ |
T Consensus 458 ae~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~--------~ 520 (661)
T 2d7d_A 458 SEDLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI--------L 520 (661)
T ss_dssp HHHHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE--------T
T ss_pred HHHHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE--------e
Confidence 99999999987 888999999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCceeeeeeecCHHHHHHhhcccCCCCCcEEEEeeChh
Q 014085 347 DPVKGMESLLVVPISKAQALQRSGRAGREGPGKCFRLYPEN 387 (431)
Q Consensus 347 d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~~G~~~~l~~~~ 387 (431)
|..... .|.+..+|+||+|||||.++|.|+.++++.
T Consensus 521 d~d~~G-----~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 521 DADKEG-----FLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp TTTCCT-----TTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred Cccccc-----CCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 432111 278899999999999999999999998753
No 70
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=7e-21 Score=172.22 Aligned_cols=172 Identities=41% Similarity=0.612 Sum_probs=136.0
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---CCcEEEEeCchhHHHHHHhHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---DGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
.++.+.+..++++++|+++++.+.+|++++++||||||||+++..++....... .+..+++..|++.++.++.+.+.
T Consensus 51 ~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 51 QAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHH
Confidence 345667788999999999999999999999999999999987777665533221 12378888999999999999998
Q ss_pred HHhCCccCCeEeEeEeecCC---------CChhHhHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHHHhhccc
Q 014085 81 EESGVELGQRVGYSIRFDDR---------TSTSTRIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQNARSKS 151 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~~~~~~ 151 (431)
...+...+..+|+....... ..+..++...+.. .+.+++++|+||||++....++....++.....+
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~--- 206 (235)
T 3llm_A 131 FERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY--- 206 (235)
T ss_dssp HTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC---
T ss_pred HHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC---
Confidence 88887777777766433222 2345555555443 5889999999999998888888888888877655
Q ss_pred cCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChHHHHhhhCCCceEE
Q 014085 152 ADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVH 217 (431)
Q Consensus 152 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~~l~~~~~~~~~~~ 217 (431)
++.+++++|||++.+.+++||++++++.
T Consensus 207 --------------------------------------~~~~~il~SAT~~~~~~~~~~~~~pvi~ 234 (235)
T 3llm_A 207 --------------------------------------PEVRIVLMSATIDTSMFCEYFFNCPIIE 234 (235)
T ss_dssp --------------------------------------TTSEEEEEECSSCCHHHHHHTTSCCCEE
T ss_pred --------------------------------------CCCeEEEEecCCCHHHHHHHcCCCCEEe
Confidence 6789999999998888999999887765
No 71
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=153.02 Aligned_cols=123 Identities=21% Similarity=0.146 Sum_probs=80.1
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-------ccCCcEEEEeCchhHHHHHHh
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-------CRDGKLIGVTQPRRVAAVTVA 76 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-------~~~~~~v~v~~p~~~l~~~~~ 76 (431)
++.+...+...++++|+++++.+.+|++++++||||||||.++...+..... ...+.+++++.|++.++.|+.
T Consensus 32 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 111 (228)
T 3iuy_A 32 LKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVE 111 (228)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHH
Confidence 3444455666899999999999999999999999999999543333222111 124567899999999999999
Q ss_pred HHHHHHhCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCC
Q 014085 77 KRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (431)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah 128 (431)
+.+..+.... ..+...... +....+.+++...+.. ..+.+++++|+||||
T Consensus 112 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 177 (228)
T 3iuy_A 112 AECSKYSYKG--LKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD 177 (228)
T ss_dssp HHHHHHCCTT--CCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH
T ss_pred HHHHHhcccC--ceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH
Confidence 9888764322 111111110 1112334444433332 236789999999998
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=150.12 Aligned_cols=173 Identities=18% Similarity=0.145 Sum_probs=107.3
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc-----cccCCcEEEEeCchhHHHHHHhHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-----FCRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~-----~~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
.+.+...+...++++|.++++.+..|+++++++|||||||.++...+.... ....+.+++++.|++.++.|+.+.
T Consensus 37 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 37 LKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 116 (236)
T ss_dssp HHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHH
Confidence 445555666789999999999999999999999999999955443333221 112356789999999999999988
Q ss_pred HHHHhCCccCCeEeEeEee-------------cCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 79 VAEESGVELGQRVGYSIRF-------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
+..+... .+..++...+. +....+...+...+.. ..+.+++++|+||||
T Consensus 117 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-------------- 181 (236)
T 2pl3_A 117 LRKVGKN-HDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-------------- 181 (236)
T ss_dssp HHHHTTT-SSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH--------------
T ss_pred HHHHhCC-CCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH--------------
Confidence 8776542 12222221111 1112233333333322 346789999999998
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh--HHHH-hhhCCCceEEec
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQ 219 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~l~-~~~~~~~~~~~~ 219 (431)
.+.+.++...+...+.. .+.+.+++++|||++. +.+. .++.++..+.++
T Consensus 182 ------------------------~~~~~~~~~~~~~i~~~----~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 182 ------------------------RILDMGFADTMNAVIEN----LPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp ------------------------HHHHTTTHHHHHHHHHT----SCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ------------------------HHhcCCcHHHHHHHHHh----CCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 33333332222222222 2256789999999944 3444 455666555544
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=149.76 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=82.3
Q ss_pred HHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh--cccccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH--AGFCRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~--~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
.+...+...++++|+++++.+.+|++++++||||||||.++...+.. ......+.+++++.|+++++.|+.+.+.+..
T Consensus 43 ~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (245)
T 3dkp_A 43 NILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS 122 (245)
T ss_dssp HHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 34444556799999999999999999999999999999543333332 2222345579999999999999999887765
Q ss_pred CCccCCeEeEeE---------------eecCCCChhHhHHHHhcc----cCCCCCcEEEEecCCc
Q 014085 84 GVELGQRVGYSI---------------RFDDRTSTSTRIKEALLD----PYLSRYSAIIVDEAHE 129 (431)
Q Consensus 84 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~----~~~~~~~~lViDEah~ 129 (431)
... +..+.... ..+....+.+++..++.. ..+.+++++|+||||.
T Consensus 123 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 123 EGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp TTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred ccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 421 11111100 011223445555554433 2467899999999995
No 74
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.70 E-value=1.1e-17 Score=151.81 Aligned_cols=173 Identities=17% Similarity=0.131 Sum_probs=107.6
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc------ccCCcEEEEeCchhHHHHHHhHH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF------CRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~------~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
+.+...+...++++|.++++.+..|++++++||||||||.++...+..... ...+..++++.|++.++.|+.+.
T Consensus 42 ~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 42 DVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp HHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHH
Confidence 334444555699999999999999999999999999999443333322211 12355789999999999999887
Q ss_pred HHHHhCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 79 VAEESGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
+..+.... +..++...+ .+....+.+++..++.. ..+.+++++|+||||
T Consensus 122 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-------------- 186 (242)
T 3fe2_A 122 AAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-------------- 186 (242)
T ss_dssp HHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH--------------
T ss_pred HHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH--------------
Confidence 76654321 122221110 01122333344333322 246789999999998
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHH-hhhCCCceEEec
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKAVHVQ 219 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~-~~~~~~~~~~~~ 219 (431)
.+++.+|...+...+..+ .++.+++++|||++.+ .+. .++.++..+.++
T Consensus 187 ------------------------~l~~~~~~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 187 ------------------------RMLDMGFEPQIRKIVDQI----RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp ------------------------HHHHTTCHHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred ------------------------HHhhhCcHHHHHHHHHhC----CccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 455555443333333333 3678999999999543 343 566666555554
Q ss_pred C
Q 014085 220 G 220 (431)
Q Consensus 220 ~ 220 (431)
.
T Consensus 239 ~ 239 (242)
T 3fe2_A 239 A 239 (242)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.70 E-value=2.8e-17 Score=148.67 Aligned_cols=123 Identities=16% Similarity=0.084 Sum_probs=81.8
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
+.+...+...++++|.++++.+.+|++++++||||||||.++...+..... ...+.+++++.|++.++.|+.+.+..+.
T Consensus 43 ~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 43 RGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 344444555699999999999999999999999999999554444443322 2235578999999999999998887765
Q ss_pred CCccCCeEeEeEe---------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCC
Q 014085 84 GVELGQRVGYSIR---------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (431)
Q Consensus 84 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah 128 (431)
... +..+..... .+....+..++...+.. ..+.+++++|+||||
T Consensus 123 ~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 123 DYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp TTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred hhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 421 111111100 11122344444444433 236789999999998
No 76
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=154.10 Aligned_cols=174 Identities=11% Similarity=0.113 Sum_probs=110.6
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVA 80 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~ 80 (431)
++.+...+...++++|.++++.+..| ++++++||||||||.++...+..... ...+..++++.|++.++.|+...+.
T Consensus 104 ~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~ 183 (300)
T 3fmo_B 104 LQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIE 183 (300)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHH
Confidence 34455566778999999999999987 99999999999999554433333322 2234578999999999999988887
Q ss_pred HHhCCccCCeEeEeEee-----------cCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSIRF-----------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~~ 146 (431)
.+.....+..++..... +..+.++.++..++.. ..+.+++++|+||||.
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~----------------- 246 (300)
T 3fmo_B 184 QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV----------------- 246 (300)
T ss_dssp HHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH-----------------
T ss_pred HHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH-----------------
Confidence 76543322333222111 1223455566555533 2367899999999983
Q ss_pred hhccccCCCCCCCCCCCCcccccc-CCCCCCCcccccccccCCCCCceEEEEcCCCCh--HHHH-hhhCCCceEEec
Q 014085 147 ARSKSADGHSNGNNNNENSDMILD-RGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFS-EYFGCAKAVHVQ 219 (431)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~l~-~~~~~~~~~~~~ 219 (431)
|++ .++...+ ..+....+++.|++++|||++. ..++ .++.++..+.+.
T Consensus 247 ---------------------l~~~~~~~~~~----~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 247 ---------------------MIATQGHQDQS----IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ---------------------HHHSTTHHHHH----HHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred ---------------------HhhccCcHHHH----HHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 222 2221111 1222222367899999999944 4444 566666555543
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.70 E-value=1.1e-17 Score=149.39 Aligned_cols=126 Identities=15% Similarity=0.113 Sum_probs=84.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.++.++..+...++++|.++++.+.+|+++++++|||||||.++...+..... ...+.+++++.|++.++.|+.+.+.+
T Consensus 15 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 94 (219)
T 1q0u_A 15 IIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLK 94 (219)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHH
Confidence 34555666777899999999999999999999999999999654444433322 22355789999999999999988877
Q ss_pred HhCCcc---CCeEeEeEe--------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCC
Q 014085 82 ESGVEL---GQRVGYSIR--------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (431)
Q Consensus 82 ~~~~~~---~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah 128 (431)
+..... +..++...+ .+....+.+++...+.. ..+.+++++|+||||
T Consensus 95 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 95 ITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred HhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 664321 111211110 01122344444444433 235789999999998
No 78
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.70 E-value=2.3e-16 Score=140.90 Aligned_cols=126 Identities=14% Similarity=0.023 Sum_probs=82.8
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc-cCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC-RDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~-~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
+.+...+...++++|.++++.+.+|+++++++|||+|||.++...+...... ..+.+++++.|++.++.|+.+.+.++.
T Consensus 27 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 27 RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 3444444556999999999999999999999999999996554444443222 224478999999999999998887775
Q ss_pred CCccCCeEeEeEee---------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcC
Q 014085 84 GVELGQRVGYSIRF---------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHER 130 (431)
Q Consensus 84 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~ 130 (431)
....+..++..... +....+.+.+...+.. ..+.+++++|+||||..
T Consensus 107 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 107 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp TTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred hhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 43222333221111 1112233333333322 23678999999999954
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.70 E-value=6.5e-17 Score=143.00 Aligned_cols=122 Identities=21% Similarity=0.118 Sum_probs=81.6
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc----ccCCcEEEEeCchhHHHHHHhHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF----CRDGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~----~~~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
.+.+...+...++++|+++++.+.+|+++++++|||||||.++...+..... ...+.+++++.|++.++.|+.+.+
T Consensus 13 ~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 92 (207)
T 2gxq_A 13 LEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASEL 92 (207)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHH
Confidence 4455556667899999999999999999999999999999654444433322 123567899999999999999988
Q ss_pred HHHhCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCC
Q 014085 80 AEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAH 128 (431)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah 128 (431)
..+... ..+...... +....+...+...+.. ..+.+++++|+||||
T Consensus 93 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 93 TAVAPH---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp HHHCTT---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred HHHhhc---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 877543 111111100 1111223333333322 236789999999998
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.69 E-value=7.6e-17 Score=144.47 Aligned_cols=125 Identities=15% Similarity=0.095 Sum_probs=81.9
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.+...+...++++|.++++.+.+|+++++++|||||||.++...+..... ...+.+++++.|++.++.|+.+.+..+
T Consensus 26 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 26 LRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 3444555566899999999999999999999999999999554444433222 223557999999999999999888776
Q ss_pred hCCccCCeEeEeEe-------------ecCCCChhHhHHHHhcc--cCCCCCcEEEEecCCc
Q 014085 83 SGVELGQRVGYSIR-------------FDDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (431)
Q Consensus 83 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~ 129 (431)
.... +..++...+ .+....+...+...+.. ..+.+++++|+||||.
T Consensus 106 ~~~~-~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 106 AFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp TTTS-CCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred hccc-CceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 5322 222211110 01112233444333332 3367899999999993
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.69 E-value=5.6e-17 Score=146.03 Aligned_cols=125 Identities=18% Similarity=0.095 Sum_probs=82.1
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHHh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEES 83 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~~ 83 (431)
+.+...+...++++|+++++.+.+|+++++++|||||||.++...+..... ...+.+++++.|++.++.|+.+.+..+.
T Consensus 37 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 37 EGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 444444555699999999999999999999999999999554444333322 2235679999999999999999887765
Q ss_pred CCccCCeEeEeEee-------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCc
Q 014085 84 GVELGQRVGYSIRF-------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (431)
Q Consensus 84 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~ 129 (431)
....+..++...+. +....+.+++...+.. ..+.+++++|+||||.
T Consensus 117 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 117 IKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK 177 (230)
T ss_dssp TTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH
T ss_pred cccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH
Confidence 43222333221110 1112333444443332 2356799999999983
No 82
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=1.1e-16 Score=141.53 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=82.8
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc-cccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-FCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~-~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
++.+...+...++++|.++++.+.+|+++++++|||||||..+...+.... ....+.+++++.|++.++.|+.+.+..+
T Consensus 15 ~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 15 LMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp HHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 344455556689999999999999999999999999999954444443332 2223557899999999999999888776
Q ss_pred hCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCc
Q 014085 83 SGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHE 129 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~ 129 (431)
.....+..++...+. +....+.+.+...+.. ..+.+++++|+||||.
T Consensus 95 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 95 SKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp TTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred HhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 643212222221111 0112223333333332 2467899999999983
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=151.75 Aligned_cols=165 Identities=16% Similarity=0.171 Sum_probs=103.4
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc-----cccCCcEEEEeCchhHHHHHHhHHH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG-----FCRDGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~-----~~~~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
+.+...+...++++|.++++.+..|++++++||||||||.++...+.... ....+..++++.|++.++.|+.+.+
T Consensus 67 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 67 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp HHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 34444555669999999999999999999999999999954433332211 1123567899999999999999988
Q ss_pred HHHhCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc---cCCCCCcEEEEecCCcCccchHHHHHHHH
Q 014085 80 AEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD---PYLSRYSAIIVDEAHERTVHTDVLLGLLK 142 (431)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~~ 142 (431)
.++.... +..++...+. +..+.+.+++...+.. ..+.+++++|+||||
T Consensus 147 ~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-------------- 211 (262)
T 3ly5_A 147 KELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-------------- 211 (262)
T ss_dssp HHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH--------------
T ss_pred HHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH--------------
Confidence 8765432 2222221111 1112233333333322 246789999999998
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCCh--HHHHh-hhCC
Q 014085 143 KVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDA--RGFSE-YFGC 212 (431)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~--~~l~~-~~~~ 212 (431)
.+++.++...+...+..+ +...+++++|||++. +.+.+ ++.+
T Consensus 212 ------------------------~l~~~~~~~~l~~i~~~~----~~~~q~l~~SAT~~~~v~~~~~~~l~~ 256 (262)
T 3ly5_A 212 ------------------------RILDVGFEEELKQIIKLL----PTRRQTMLFSATQTRKVEDLARISLKK 256 (262)
T ss_dssp ------------------------HHHHTTCHHHHHHHHHHS----CSSSEEEEECSSCCHHHHHHHHHHCSS
T ss_pred ------------------------HHhhhhHHHHHHHHHHhC----CCCCeEEEEEecCCHHHHHHHHHHcCC
Confidence 444444443333333333 256799999999944 34443 4443
No 84
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.68 E-value=4.7e-17 Score=148.27 Aligned_cols=124 Identities=18% Similarity=0.156 Sum_probs=82.3
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc-ccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF-CRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~-~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.++..+...++++|.++++.+..|++++++||||||||.++...+..... ...+.+++++.|++.++.|+.+.+..+
T Consensus 55 ~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 55 CEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4455556667899999999999999999999999999999655444443322 223456899999999999999887766
Q ss_pred hCCccCCeEeEeEe--------------ecCCCChhHhHHHHhcc---cCCCCCcEEEEecCC
Q 014085 83 SGVELGQRVGYSIR--------------FDDRTSTSTRIKEALLD---PYLSRYSAIIVDEAH 128 (431)
Q Consensus 83 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~---~~~~~~~~lViDEah 128 (431)
... .+..++.... .+....+..++...+.. ..+.+++++|+||||
T Consensus 135 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 135 GSS-IGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp HGG-GTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred hcc-CCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 432 1222221111 01122333344333322 246789999999998
No 85
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.68 E-value=5.8e-17 Score=148.13 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=105.9
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc----------ccCCcEEEEeCchhHHHHH
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF----------CRDGKLIGVTQPRRVAAVT 74 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~----------~~~~~~v~v~~p~~~l~~~ 74 (431)
+.+...+...++++|.++++.+.+|+++++++|||||||.++...+..... ...+.+++++.|++.++.|
T Consensus 36 ~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 36 NNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ 115 (253)
T ss_dssp TTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHH
Confidence 344445566789999999999999999999999999999544333332211 1123478999999999999
Q ss_pred HhHHHHHHhCCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--cCCCCCcEEEEecCCcCccchHHHH
Q 014085 75 VAKRVAEESGVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--PYLSRYSAIIVDEAHERTVHTDVLL 138 (431)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~lViDEah~~~~~~~~~~ 138 (431)
+.+.+..+.... +..+...... +....+..++...+.. ..+.+++++|+||||.
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~--------- 185 (253)
T 1wrb_A 116 ILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR--------- 185 (253)
T ss_dssp HHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH---------
T ss_pred HHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH---------
Confidence 998887765432 1222111110 1112333344443332 2367899999999983
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCCccccccCCCCCCCcccccccccCCCCCceEEEEcCCCChH--HHH-hhhCCCce
Q 014085 139 GLLKKVQNARSKSADGHSNGNNNNENSDMILDRGNDTNGINTLKQCQGRKFAPLKLIIMSASLDAR--GFS-EYFGCAKA 215 (431)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lSAT~~~~--~l~-~~~~~~~~ 215 (431)
+++.++...+...+..+......+.+++++|||++.+ .+. .++.++..
T Consensus 186 -----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~ 236 (253)
T 1wrb_A 186 -----------------------------MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIF 236 (253)
T ss_dssp -----------------------------HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred -----------------------------HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEE
Confidence 3333333333333332111111257899999999443 444 56666555
Q ss_pred EEecC
Q 014085 216 VHVQG 220 (431)
Q Consensus 216 ~~~~~ 220 (431)
+.+..
T Consensus 237 i~~~~ 241 (253)
T 1wrb_A 237 MTVGR 241 (253)
T ss_dssp EEEC-
T ss_pred EEECC
Confidence 55543
No 86
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.62 E-value=3.6e-16 Score=143.68 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCC-CcE-EEEecCccccccccC
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAG-FRK-VILATNIAETSVTIP 330 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g-~~~-vLvaT~~~~~Gvdip 330 (431)
++.++||||+++..++.+...|.+.. ++.+..+||+++.++|..+++.|+++ ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 46789999999999999999998732 77788899999999999999999988 676 799999999999999
Q ss_pred CcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-Cc--EEEEeeChh
Q 014085 331 GIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-PG--KCFRLYPEN 387 (431)
Q Consensus 331 ~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-~G--~~~~l~~~~ 387 (431)
++++||+ || .|.++..|.||+||++|.| .+ .+|++++..
T Consensus 183 ~a~~VI~--------~d----------~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 183 SANRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCSEEEE--------CS----------CCSCTTTC--------------CCEEEEEEETT
T ss_pred cCCEEEE--------EC----------CCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999 77 5778888999999999999 33 467887654
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.60 E-value=1e-15 Score=154.79 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEE-
Q 014085 240 ATLITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVIL- 318 (431)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLv- 318 (431)
.....+.+... ..++++|||++|....+.++..+.+ ..+ ..+|.. .+|..+++.|+++. .||+
T Consensus 371 ~~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-----------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~~ 434 (540)
T 2vl7_A 371 IYSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-----------IPV-IEENKK--TRHEEVLELMKTGK-YLVML 434 (540)
T ss_dssp HHHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-----------SCE-EESTTT--CCHHHHHHHHHTSC-CEEEE
T ss_pred HHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-----------Cce-EecCCC--CcHHHHHHHHhcCC-eEEEE
Confidence 33334444443 3478899999999999999876632 222 335543 46888899998764 5666
Q ss_pred -ecCccccccccCC----cEEEEeCccccceeecCC-------------CCceeeeeeecCHHHHHHhhcccCCCC--Cc
Q 014085 319 -ATNIAETSVTIPG----IKYVIDPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREG--PG 378 (431)
Q Consensus 319 -aT~~~~~Gvdip~----v~~VI~~~~~~~~~~d~~-------------~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G 378 (431)
||..+.+|||+|+ +++||..|+.-...-|+. .+...+. .|.......|.+||+-|.. .|
T Consensus 435 V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g 513 (540)
T 2vl7_A 435 VMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYV 513 (540)
T ss_dssp EC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCC
T ss_pred EecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccE
Confidence 8999999999997 899999877432211110 0000000 1222567889999999986 56
Q ss_pred EEE
Q 014085 379 KCF 381 (431)
Q Consensus 379 ~~~ 381 (431)
..+
T Consensus 514 ~v~ 516 (540)
T 2vl7_A 514 KIY 516 (540)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 88
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.59 E-value=3.8e-14 Score=145.19 Aligned_cols=78 Identities=21% Similarity=0.101 Sum_probs=55.9
Q ss_pred hccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCC
Q 014085 10 RKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQ 89 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~ 89 (431)
...+.++++|...++.+..|+ +..++||+|||..+.+.+..... .+..+.|+.|++.|+.|..+.+..+.. ..+.
T Consensus 75 ~lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~-~lGL 149 (997)
T 2ipc_A 75 YLGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYR-GLGL 149 (997)
T ss_dssp HTCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHH-TTTC
T ss_pred HhCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHH-hcCC
Confidence 345688999999999999999 88999999999433333321111 245688999999999998887665544 2344
Q ss_pred eEe
Q 014085 90 RVG 92 (431)
Q Consensus 90 ~~~ 92 (431)
.++
T Consensus 150 sv~ 152 (997)
T 2ipc_A 150 SVG 152 (997)
T ss_dssp CEE
T ss_pred eEE
Confidence 444
No 89
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=129.21 Aligned_cols=121 Identities=21% Similarity=0.111 Sum_probs=74.6
Q ss_pred hhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccc----cCCcEEEEeCchhHHHHH-HhHHHHHHh
Q 014085 9 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RDGKLIGVTQPRRVAAVT-VAKRVAEES 83 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~----~~~~~v~v~~p~~~l~~~-~~~~~~~~~ 83 (431)
....++++++|.+++..+.+++++++.+|||+|||.++..++...... ..+.+++++.|++.++.| ..+.+..+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999996655555432211 124568888899999888 555566655
Q ss_pred CCccCCeEeEeEee--------------cCCCChhHhHHHHhcc--------cCCCCCcEEEEecCCcCc
Q 014085 84 GVELGQRVGYSIRF--------------DDRTSTSTRIKEALLD--------PYLSRYSAIIVDEAHERT 131 (431)
Q Consensus 84 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~--------~~~~~~~~lViDEah~~~ 131 (431)
... ..++..... .....+...+...+.. ..+.+++++|+||||...
T Consensus 108 ~~~--~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 108 KKW--YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp TTT--SCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred ccC--ceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 431 111111100 1111223333333332 235789999999999753
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.42 E-value=3.2e-13 Score=121.71 Aligned_cols=113 Identities=20% Similarity=0.120 Sum_probs=72.1
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCc-cCC
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVE-LGQ 89 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~-~~~ 89 (431)
..+.++++|.+++..+.+++++++++|||+|||.++..++... +..++++.|++.++.|..+.+.+ ++.. ++.
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~ 163 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-FGEEYVGE 163 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEE
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEE
Confidence 4467899999999999999999999999999997665555443 34577778888899888887766 3322 111
Q ss_pred eEeEeE-eecCCCChhHhHHHHhcccCCCCCcEEEEecCCcC
Q 014085 90 RVGYSI-RFDDRTSTSTRIKEALLDPYLSRYSAIIVDEAHER 130 (431)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lViDEah~~ 130 (431)
..|... .......+...+..... ....+++++|+||||..
T Consensus 164 ~~g~~~~~~~i~v~T~~~l~~~~~-~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 164 FSGRIKELKPLTVSTYDSAYVNAE-KLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp ESSSCBCCCSEEEEEHHHHHHTHH-HHTTTCSEEEEECSSCC
T ss_pred EeCCCCCcCCEEEEeHHHHHhhHH-HhcccCCEEEEECCccC
Confidence 111000 00011112222221111 22356999999999953
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.40 E-value=1.5e-13 Score=127.56 Aligned_cols=71 Identities=14% Similarity=-0.060 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
+.++++|.+++..+..+++.++++|||+|||.++..++..... ..+.+++++.|++.++.|+.+.+.++..
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE-NYEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHH-HCSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 5789999999999998889999999999999665444443222 2233788889999999999998887644
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.35 E-value=5.1e-11 Score=120.76 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=95.4
Q ss_pred ceEEEEcCCC-ChHHHHhhhCCC-ceE------EecCce-eeeeEeeec-CCC------cchHHHHHHHHHHHhhcCCCC
Q 014085 192 LKLIIMSASL-DARGFSEYFGCA-KAV------HVQGRQ-FPVEILYTL-YPE------PDYLDATLITIFQVHLDEAPG 255 (431)
Q Consensus 192 ~~~v~lSAT~-~~~~l~~~~~~~-~~~------~~~~~~-~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~ 255 (431)
..+|++|||+ +.+.+.+.+|-. +.. .++... ....++.-. .+. ..+...+...+.+.... .++
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~g 394 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AKA 394 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CSS
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CCC
Confidence 5889999999 444566666643 221 011111 111111111 111 22344445555555443 467
Q ss_pred cEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEec--CccccccccC---
Q 014085 256 DILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILAT--NIAETSVTIP--- 330 (431)
Q Consensus 256 ~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT--~~~~~Gvdip--- 330 (431)
+++||++|....+.+++. .+..+..=..+++..+ +++.|+...-.||+|| ..+.+|||+|
T Consensus 395 ~~lvlF~Sy~~l~~v~~~------------~~~~v~~q~~~~~~~~---~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSR------------ISLPKYVESEDSSVED---LYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp EEEEEESCHHHHHHHHTT------------CCSSEEECCSSCCHHH---HHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred CEEEEecCHHHHHHHHHh------------cCCcEEEcCCCCCHHH---HHHHHHhcCCeEEEEEecceecccccccccC
Confidence 999999999988888861 1444444333555544 4445533334799998 5999999999
Q ss_pred --CcEEEEeCcccccee----------ecCCCCceee---eeeecCHHHHHHhhcccCCCCC
Q 014085 331 --GIKYVIDPGFVKARL----------YDPVKGMESL---LVVPISKAQALQRSGRAGREGP 377 (431)
Q Consensus 331 --~v~~VI~~~~~~~~~----------~d~~~~~~~~---~~~p~s~~~~~qr~GR~gR~~~ 377 (431)
..++||-.|+.--.. ++...+.... -..| -.....|-+||+-|...
T Consensus 460 g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~ 520 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVN 520 (551)
T ss_dssp EESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTT
T ss_pred CcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCC
Confidence 478888777643221 1111111011 1123 55667899999999873
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.23 E-value=2.2e-06 Score=87.47 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.+.|++++..+..+++++++||+|+|||+++..++..... ...+..++++.|+..++.+..+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 5789999999999999999999999999776555433211 12345788999999999887766543
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.79 E-value=2.2e-05 Score=80.20 Aligned_cols=175 Identities=20% Similarity=0.226 Sum_probs=96.4
Q ss_pred ceEEEEcCCC-ChHHHHhhhCCC-ceEEecCce--eeeeEeeecC-C------CcchHHHHHHHHHHHhhcCCCCcEEEE
Q 014085 192 LKLIIMSASL-DARGFSEYFGCA-KAVHVQGRQ--FPVEILYTLY-P------EPDYLDATLITIFQVHLDEAPGDILVF 260 (431)
Q Consensus 192 ~~~v~lSAT~-~~~~l~~~~~~~-~~~~~~~~~--~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~lVF 260 (431)
..+|++|||+ +.+.+.+.+|-. ..+.++... ....+.+... + ...+.......+.+.... .+++++||
T Consensus 376 ~~~il~SaTL~p~~~~~~~lGl~~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~-~~g~~lvl 454 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITGFEIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILK-VKKNTIVY 454 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHCCCCCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHH-HCSCEEEE
T ss_pred CeEEEEccCCCcHHHHHHHhCCCceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 4678999999 555666666643 222222110 0111111111 1 112233444444444443 36789999
Q ss_pred cCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC--ccccccccC--CcEEEE
Q 014085 261 LTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN--IAETSVTIP--GIKYVI 336 (431)
Q Consensus 261 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~--~~~~Gvdip--~v~~VI 336 (431)
++|....+.++..+. . + +.. ...+++..+|..+++.|+ ++..||++|. .+.+|||+| ..++||
T Consensus 455 F~Sy~~l~~v~~~l~-~---~-----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 455 FPSYSLMDRVENRVS-F---E-----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp ESCHHHHHHHTSSCC-S---C-----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred eCCHHHHHHHHHHHH-h---c-----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 999998888877664 1 0 222 455666778999999999 8889999985 899999996 467888
Q ss_pred eCccccceeecCC-------------CCceeeeeeecCHHHHHHhhcccCCCC--CcEEEE
Q 014085 337 DPGFVKARLYDPV-------------KGMESLLVVPISKAQALQRSGRAGREG--PGKCFR 382 (431)
Q Consensus 337 ~~~~~~~~~~d~~-------------~~~~~~~~~p~s~~~~~qr~GR~gR~~--~G~~~~ 382 (431)
-.|+.--. -|+. .+....-..| -.....|-+||+-|.. .|..+.
T Consensus 522 I~~lPfp~-~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~l 580 (620)
T 4a15_A 522 LAGLPFPR-PDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVI 580 (620)
T ss_dssp ESSCCCCC-CCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEE
T ss_pred EEcCCCCC-CCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEE
Confidence 77764211 0100 0000000112 3456789999999987 454433
No 95
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.78 E-value=0.00047 Score=67.90 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHhC----CC-EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHH
Q 014085 14 PIASVEKRLVEEVRK----ND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRV 79 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~----g~-~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~ 79 (431)
.+.+-|++++..+.. ++ .++|.|+.|+|||+++..++...... +...++++.|+..++....+.+
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCceEEEecCcHHHHHHHHhhh
Confidence 467889998886643 24 99999999999997776555443222 2236788888888776665543
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.77 E-value=4.8e-05 Score=76.92 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=50.2
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHH
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKR 78 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~ 78 (431)
.+.+.+.|++++..+..++.++|+||.|+|||+++..++.... ..+..++++.|+..++....+.
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~--~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAE--SLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEecCcHHHHHHhHhh
Confidence 3557789999999999999999999999999977766554322 2356788888888887666553
No 97
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.68 E-value=1.4e-05 Score=70.72 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=79.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC----------------cE
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG----------------KL 61 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~----------------~~ 61 (431)
++++.+..+.|+..++.+.+...+.+|+.+.|.||+||||||++..+.-...... .+ +.
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 5566666666654444455566677999999999999999999877763322110 00 11
Q ss_pred EEEeCchh-----HHHHHHhH------------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCC
Q 014085 62 IGVTQPRR-----VAAVTVAK------------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSR 118 (431)
Q Consensus 62 v~v~~p~~-----~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (431)
+.+++... ..+.+... .+.+..+.. ..........+..++.+..++..+..+
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-----DKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----TCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-----hhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 33332110 01111000 011111110 011122334667777777778888999
Q ss_pred CcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 119 YSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 119 ~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
.+++++|| ++.+......+.++++++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~ 187 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKIN 187 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999 5566666777888887764
No 98
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.63 E-value=5.8e-06 Score=78.66 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=84.8
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEe
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVT 65 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~ 65 (431)
|.++++.+..+.|....+.+.+...+.+|+.+.+.||+||||||++..+.-...... ..+.+.++
T Consensus 1 M~~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred CCEEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 556777777777766555566667778999999999999999999887764322110 01123332
Q ss_pred C------chhHHHHHHh-----------------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEE
Q 014085 66 Q------PRRVAAVTVA-----------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAI 122 (431)
Q Consensus 66 ~------p~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (431)
. |.....+++. ..+.+..+.. .+..+.....+..++++..++..+..+.+++
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL 155 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-----HLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-----GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----hhhcCChhHCCHHHHHHHHHHHHHHcCCCEE
Confidence 2 1111111110 0111111111 1122233456777778877777788899999
Q ss_pred EEec--CCcCccchHHHHHHHHHHHHh
Q 014085 123 IVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 123 ViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
++|| ...+......++.+++++...
T Consensus 156 LLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRIEISRLHKR 182 (381)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHh
Confidence 9999 445555667777888777653
No 99
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.62 E-value=0.00022 Score=72.89 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=48.0
Q ss_pred CChHHHHHHHHH----HHhCCCEEEEEcCCCCChh--ccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 13 LPIASVEKRLVE----EVRKNDILIIVGETGSGKT--TQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 13 ~~~~~~Q~~~~~----~~~~g~~~vi~apTGsGKT--~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
|.+++.|.++.. .+..|+++++.||||+||| +++|.+..... .+.+++++.|++.+..|+.+.+...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~---~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE---RKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH---HTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh---cCCeEEEECCCHHHHHHHHHHHHHH
Confidence 456788887765 5568999999999999999 44555443321 2457899999999999988776544
No 100
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.62 E-value=7.6e-06 Score=73.92 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=81.6
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC-----------cEEEE
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG-----------KLIGV 64 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~-----------~~v~v 64 (431)
|+++++.+..+.|.-.++.+.+...+.+|+.+.|.||+||||||++..+.-...... .+ +.+.+
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 566777777777754444455566677999999999999999999877763322110 00 11333
Q ss_pred eCchh-----HHHHHHhHH------------------HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcE
Q 014085 65 TQPRR-----VAAVTVAKR------------------VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSA 121 (431)
Q Consensus 65 ~~p~~-----~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (431)
++... ..+.+.... +.+..+.. .+........+..++.+..++..++.+.++
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----EKIKDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----GGGGSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-----hHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 32211 011111110 11111110 011122334677777777777788899999
Q ss_pred EEEec--CCcCccchHHHHHHHHHHH
Q 014085 122 IIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 122 lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
+++|| +..+......+.++++++.
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHH
Confidence 99999 4556666777788877764
No 101
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.60 E-value=1.5e-05 Score=72.40 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=79.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCc------------------EEEE
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGK------------------LIGV 64 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~------------------~v~v 64 (431)
++++.+..+.+...++.+.+...+.+|+.+.|+||+||||||++..+.-..... .|. .+.+
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-HGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS-SCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEECCcCCHHHHhheEEE
Confidence 456666667666555556666777899999999999999999987776432211 111 1111
Q ss_pred eCchh-----HHHHHH----------------hHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCC------
Q 014085 65 TQPRR-----VAAVTV----------------AKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLS------ 117 (431)
Q Consensus 65 ~~p~~-----~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 117 (431)
++... ..+.+. ...+.+..+.. ..........+..++.+..++...+.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-----ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-----TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-----hHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 11000 000000 01111111110 01111223456666666666666666
Q ss_pred CCcEEEEec--CCcCccchHHHHHHHHHHHHh
Q 014085 118 RYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 118 ~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
+.+++++|| +..+......+.++++++...
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 899999999 555666778888888877543
No 102
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.59 E-value=6.9e-05 Score=61.66 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+|+.+++.||+|+|||+++..+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998886665443
No 103
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.53 E-value=2.6e-05 Score=73.93 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=84.4
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEe
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVT 65 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~ 65 (431)
|.++++.+..+.|.-.++.+.+...+.+|+.+.+.||+||||||++..+.-...... ..+.+.++
T Consensus 1 m~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CCCEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred CcEEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 455667777777754444555666777999999999999999999887763322100 01123333
Q ss_pred Cchh-----HHHHHHh------------------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEE
Q 014085 66 QPRR-----VAAVTVA------------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAI 122 (431)
Q Consensus 66 ~p~~-----~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (431)
.... ..+.+.. ..+.+..+.. .+..+.....+..++.+..++..+..+.+++
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 155 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----KLLNRYPWQLSGGQQQRVAIARALVKEPEVL 155 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----hHhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2110 0111110 0111111111 1112233456777888888888889999999
Q ss_pred EEec--CCcCccchHHHHHHHHHHHHh
Q 014085 123 IVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 123 ViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
++|| .+.+......+..+++++...
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (362)
T 2it1_A 156 LLDEPLSNLDALLRLEVRAELKRLQKE 182 (362)
T ss_dssp EEESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHh
Confidence 9999 455566667777888777543
No 104
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.50 E-value=1.1e-05 Score=72.80 Aligned_cols=139 Identities=18% Similarity=0.155 Sum_probs=79.7
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC----CcEEEEeCchh-----HHH
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRR-----VAA 72 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----~~~v~v~~p~~-----~l~ 72 (431)
++++.+..+.++ -.++.+.+...+.+|+.+.|.||+||||||++..+.-......+ .+.+.+++... ..+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence 455556666664 33344445566779999999999999999998777644321110 11233333211 011
Q ss_pred HHHh----------------------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CC
Q 014085 73 VTVA----------------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AH 128 (431)
Q Consensus 73 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah 128 (431)
.+.. ..+.+..+.. ..........+..++.+..++.....+.+++++|| ++
T Consensus 84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-----HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-----GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-----HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 1110 0111111111 01111233467777777777777888999999999 55
Q ss_pred cCccchHHHHHHHHHHHH
Q 014085 129 ERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~ 146 (431)
.+......+.++++++..
T Consensus 159 LD~~~~~~l~~~l~~l~~ 176 (253)
T 2nq2_C 159 LDLANQDIVLSLLIDLAQ 176 (253)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 666667778888877643
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.49 E-value=0.00028 Score=59.84 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHh---------CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 16 ASVEKRLVEEVR---------KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 16 ~~~Q~~~~~~~~---------~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+-|++++..+. +|+.+++.||+|+|||+++..+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 345666655554 58999999999999998887665443
No 106
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.49 E-value=2.4e-05 Score=73.93 Aligned_cols=142 Identities=20% Similarity=0.188 Sum_probs=83.7
Q ss_pred CchhhHHHhhccCChHH--HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC--------------
Q 014085 1 MPRQKILQQRKSLPIAS--VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG-------------- 59 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~-------------- 59 (431)
|.++++.+..+.|.-.+ +.+.+...+.+|+.+.+.||+||||||++..+.-...... .+
T Consensus 1 M~~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CCCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred CcEEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 55566667777775443 4445666777999999999999999999887763321100 01
Q ss_pred -cEEEEeCchh-----HHHHHHh------------------HHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccC
Q 014085 60 -KLIGVTQPRR-----VAAVTVA------------------KRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPY 115 (431)
Q Consensus 60 -~~v~v~~p~~-----~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (431)
+.+.++.... ..+.+.. ..+.+..+.. .+..+.....+..++.+..++..+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----~~~~~~~~~LSGGq~QRvalAraL 155 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-----HVLNHFPRELSGAQQQRVALARAL 155 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-----GGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----hHhcCChhhCCHHHHHHHHHHHHH
Confidence 1122221110 0111100 0111111110 111122345677777777888888
Q ss_pred CCCCcEEEEec--CCcCccchHHHHHHHHHHHHh
Q 014085 116 LSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 116 ~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
..+.+++++|| .+.+......+..+++++...
T Consensus 156 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 189 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189 (353)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 566677778888888887643
No 107
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.48 E-value=1.3e-06 Score=82.75 Aligned_cols=142 Identities=16% Similarity=0.185 Sum_probs=82.0
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEe
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVT 65 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~ 65 (431)
|.++++.+..+.|.-.++.+.+...+.+|+.+.+.||+||||||++..+.-...... ..+.+.++
T Consensus 1 M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred CcEEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 445666666666654444455666677999999999999999999887763322110 01123333
Q ss_pred CchhH-----HHHHHhH---------------H---HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEE
Q 014085 66 QPRRV-----AAVTVAK---------------R---VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAI 122 (431)
Q Consensus 66 ~p~~~-----l~~~~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (431)
..... .+.+... + +.+..+. ..+..+.....+..++.+..++..+..+.+++
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L-----~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL 155 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI-----DNLLDRKPTQLSGGQQQRVALARALVKQPKVL 155 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTC-----GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----chHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 21110 1111100 0 1111111 01112223456777777777888889999999
Q ss_pred EEec--CCcCccchHHHHHHHHHHHHh
Q 014085 123 IVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 123 ViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
++|| .+.+......+..+++++...
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 9999 455566667778888777543
No 108
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.47 E-value=1.5e-06 Score=82.15 Aligned_cols=139 Identities=19% Similarity=0.185 Sum_probs=80.2
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC--------------cEEE
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG--------------KLIG 63 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~--------------~~v~ 63 (431)
++++.+..+.|...++.+.+...+.+|+.+.+.||+||||||++..+.-...... .+ +.+.
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 5677777777766555556667778999999999999999999887763322110 01 1122
Q ss_pred EeCchhH-----HHHHH------------------hHHHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCc
Q 014085 64 VTQPRRV-----AAVTV------------------AKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYS 120 (431)
Q Consensus 64 v~~p~~~-----l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (431)
++..... .+.+. ...+.+..+.. .+..+.....+..++++..++..+..+.+
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-----~~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-----ELAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-----GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-----hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2211100 01000 00111111110 11122334567777777788888899999
Q ss_pred EEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 121 AIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 121 ~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
++++|| ...+......+...+++...
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~ 186 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALR 186 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999999 44444555666666666544
No 109
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.45 E-value=3.6e-05 Score=73.28 Aligned_cols=142 Identities=20% Similarity=0.218 Sum_probs=82.5
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC----------------
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG---------------- 59 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~---------------- 59 (431)
|.++++.+..+.|.-.++.+.+...+.+|+.+.+.||+||||||++..+.-...... .+
T Consensus 1 M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CCEEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 445666666676654444445566677999999999999999999887763321110 01
Q ss_pred cEEEEeCch-----hHHHHHHhH------------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCC
Q 014085 60 KLIGVTQPR-----RVAAVTVAK------------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYL 116 (431)
Q Consensus 60 ~~v~v~~p~-----~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (431)
+.+.++... ...+.+... .+.+..+.. .+..+.....+..++.+..++..+.
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----~~~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-----ELLNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-----GGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-----hHhcCCcccCCHHHHHHHHHHHHHh
Confidence 112222111 001111100 111111111 1112233456777778878888888
Q ss_pred CCCcEEEEec--CCcCccchHHHHHHHHHHHHh
Q 014085 117 SRYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 117 ~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
.+.+++++|| .+.+......+..+++++...
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 188 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh
Confidence 9999999999 555666667777888777543
No 110
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.42 E-value=0.0016 Score=62.93 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (431)
+..++++||+|+||||++..+...... .+.++.++ .+.+..+.++...+....+..+ . ...........
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~------~-~~~~~~dp~~i 167 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV------Y-GEPNNQNPIEI 167 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE------E-CCTTCSCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecCccchhHHHHHHHHHHhcCCce------e-eccccCCHHHH
Confidence 357889999999999887666644322 23334333 3445444444444444333221 0 01111122222
Q ss_pred HHHHhcccCCCCCcEEEEecCCcCc
Q 014085 107 IKEALLDPYLSRYSAIIVDEAHERT 131 (431)
Q Consensus 107 ~~~~~~~~~~~~~~~lViDEah~~~ 131 (431)
....+......+++++++|++....
T Consensus 168 ~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 168 AKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcc
Confidence 2333333344679999999986433
No 111
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.41 E-value=2.5e-06 Score=81.22 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=79.7
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----C----------CcEEEEe
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----D----------GKLIGVT 65 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~----------~~~v~v~ 65 (431)
|.++++.+..+.|...++.+.+...+.+|+.+.+.||+||||||++..+.-...... . .+.+.++
T Consensus 9 M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eeeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 345666677777754444455666677999999999999999999887763322110 0 0112222
Q ss_pred CchhHHHH--HHhHH---------------------HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEE
Q 014085 66 QPRRVAAV--TVAKR---------------------VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAI 122 (431)
Q Consensus 66 ~p~~~l~~--~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (431)
.....+.. -+.+. +.+..+.. .+..+.....+..++.+..++..+..+.+++
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 163 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-----ELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 163 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-----GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----hHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 21111100 00010 11111110 1111223345556666677777778899999
Q ss_pred EEec--CCcCccchHHHHHHHHHHHHh
Q 014085 123 IVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 123 ViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
++|| .+.+......+..+++++...
T Consensus 164 LLDEP~s~LD~~~r~~l~~~l~~l~~~ 190 (372)
T 1v43_A 164 LMDEPLSNLDAKLRVAMRAEIKKLQQK 190 (372)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHh
Confidence 9999 455666667778888777543
No 112
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.41 E-value=7e-06 Score=74.94 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=79.8
Q ss_pred hhhHHHhhccCChH-HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC--------------cEE
Q 014085 3 RQKILQQRKSLPIA-SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG--------------KLI 62 (431)
Q Consensus 3 ~~~~~~~~~~~~~~-~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~--------------~~v 62 (431)
++++.+..+.|+.. ++.+.+...+.+|+.+.|+||+||||||++..+.-...... .+ +.+
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 56777777777532 34555666778999999999999999999877764322110 00 112
Q ss_pred EEeCchh------HHHHHHhH------------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCC
Q 014085 63 GVTQPRR------VAAVTVAK------------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSR 118 (431)
Q Consensus 63 ~v~~p~~------~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (431)
.+++-.. ..+.+... .+.+..+.. ..........+..++.+..++..+..+
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----~~~~~~~~~LSgGqkQRv~iAraL~~~ 161 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-----HLKDKPTHCLSFGQKKRVAIAGVLVME 161 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-----GGTTSBGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----hhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 2222110 00110000 001111110 011122334566667777777778899
Q ss_pred CcEEEEec--CCcCccchHHHHHHHHHHH
Q 014085 119 YSAIIVDE--AHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 119 ~~~lViDE--ah~~~~~~~~~~~~~~~~~ 145 (431)
.+++++|| +..+......+.++++++.
T Consensus 162 P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 162 PKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 99999999 4556667778888888775
No 113
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.38 E-value=6.2e-05 Score=71.02 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=81.3
Q ss_pred hhhHHHhhccC-ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc---------------CCcEEEEeC
Q 014085 3 RQKILQQRKSL-PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR---------------DGKLIGVTQ 66 (431)
Q Consensus 3 ~~~~~~~~~~~-~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~---------------~~~~v~v~~ 66 (431)
++++.+..+.| .-.++.+.+...+.+|+.+.+.||+||||||++..+.-...... ..+.+.++.
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEEC
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEe
Confidence 45555666666 43334445556677999999999999999999887763322100 011233332
Q ss_pred chhH-----HHHHHh---------------HH---HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEE
Q 014085 67 PRRV-----AAVTVA---------------KR---VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAII 123 (431)
Q Consensus 67 p~~~-----l~~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 123 (431)
.... .+.+.. ++ +.+..+. ..+..+.....+..++.+..++..+..+.++++
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL-----~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 168 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRL-----ESYANRFPHELSGGQQQRVALARALAPRPQVLL 168 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC-----GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1110 111110 01 1111111 011122334567778888888888899999999
Q ss_pred Eec--CCcCccchHHHHHHHHHHHH
Q 014085 124 VDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 124 iDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
+|| +..+......+..+++++..
T Consensus 169 LDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 169 FDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp EESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHH
Confidence 999 55566666777888877754
No 114
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.23 E-value=0.00058 Score=60.72 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=38.0
Q ss_pred CCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHHh
Q 014085 99 DRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
...+..++.+..++...+.+.+++++|| ++.+......+.++++++...
T Consensus 144 ~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~ 194 (235)
T 3tif_A 144 NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194 (235)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4456777777777778889999999999 556667778888888877543
No 115
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.20 E-value=0.00051 Score=64.87 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=81.3
Q ss_pred hhhHHHhhccCCh----HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC--------------
Q 014085 3 RQKILQQRKSLPI----ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG-------------- 59 (431)
Q Consensus 3 ~~~~~~~~~~~~~----~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~-------------- 59 (431)
++++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+.-...... .+
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5566666666642 223445666778999999999999999999877764322110 00
Q ss_pred -cEEEEeCch-----hHHHHHHhH------------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccC
Q 014085 60 -KLIGVTQPR-----RVAAVTVAK------------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPY 115 (431)
Q Consensus 60 -~~v~v~~p~-----~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (431)
+.+.+++-. ...+.+... .+.+..+.. ..........+..++.+..++..+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-----~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-----DKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-----GGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----hHhcCChhhCCHHHHHHHHHHHHH
Confidence 112222210 001111100 011111110 011223345677777888888888
Q ss_pred CCCCcEEEEec--CCcCccchHHHHHHHHHHHHh
Q 014085 116 LSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 116 ~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
..+.+++++|| ...+......++++++++...
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~ 212 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRR 212 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh
Confidence 99999999999 455666778888888887543
No 116
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.16 E-value=4.7e-05 Score=66.73 Aligned_cols=136 Identities=16% Similarity=0.111 Sum_probs=79.0
Q ss_pred hhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC-------cEEEEeCchh--
Q 014085 4 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG-------KLIGVTQPRR-- 69 (431)
Q Consensus 4 ~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~-------~~v~v~~p~~-- 69 (431)
+++.+..+.++. ++.+.+...+.+|+.+.|.||+||||||++..+.-...... .+ +.+.+++...
T Consensus 11 l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~ 89 (214)
T 1sgw_A 11 LEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIV 89 (214)
T ss_dssp EEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCC
T ss_pred EEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcC
Confidence 344445555543 33444555677899999999999999999877764322110 01 1233333211
Q ss_pred ---HHHHHHhHH----------------HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CC
Q 014085 70 ---VAAVTVAKR----------------VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AH 128 (431)
Q Consensus 70 ---~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah 128 (431)
..+.+.... +.+..+.. .. .......+..++.+..++..++.+.+++++|| +.
T Consensus 90 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~ 163 (214)
T 1sgw_A 90 PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 163 (214)
T ss_dssp CTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred CCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcC
Confidence 011111111 11111110 01 12233467777888888888899999999999 55
Q ss_pred cCccchHHHHHHHHHHHH
Q 014085 129 ERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~ 146 (431)
.+......+.++++++..
T Consensus 164 LD~~~~~~l~~~l~~~~~ 181 (214)
T 1sgw_A 164 IDEDSKHKVLKSILEILK 181 (214)
T ss_dssp SCTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 667777888888887754
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0021 Score=59.52 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+++|.||+|+|||+++..++...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999997777666543
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.11 E-value=0.0018 Score=56.89 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+|+.+++.||+|||||+++..++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999998877766443
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.10 E-value=0.00026 Score=59.62 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.4
Q ss_pred HhCCCEEEEEcCCCCChhccHhH
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQ 48 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~ 48 (431)
+.+|+.++++||+||||||++..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45789999999999999999875
No 120
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.09 E-value=0.00081 Score=62.99 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=54.3
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEee
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRF 97 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (431)
+.+.+...+.+|+.++++|||||||||++..++..... . ...+.+--+. ... .......+++..+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-~-~g~i~i~~~~-e~~-----------~~~~~~~i~~~~g- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-E-ERIISIEDTE-EIV-----------FKHHKNYTQLFFG- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-T-SCEEEEESSC-CCC-----------CSSCSSEEEEECB-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-C-CcEEEECCee-ccc-----------cccchhEEEEEeC-
Confidence 45667778889999999999999999988777655432 1 2234333221 100 0001223333321
Q ss_pred cCCCChhHhHHHHhcccCCCCCcEEEEecCC
Q 014085 98 DDRTSTSTRIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lViDEah 128 (431)
...+.+..+......+.+++++||.-
T Consensus 225 -----gg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 225 -----GNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp -----TTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred -----CChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 22334444455566789999999984
No 121
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.06 E-value=0.00076 Score=59.22 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=28.3
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~ 69 (431)
..|..+++.||+|+|||+++...+.+... .+.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEecc
Confidence 35778899999999999887666655432 245566665543
No 122
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.03 E-value=0.0053 Score=59.40 Aligned_cols=95 Identities=24% Similarity=0.257 Sum_probs=49.4
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
..++++|++|+||||++..++..... .+.++.++ .|.+..+.++...+....+..+ + ...........+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~--~~~~~~dp~~i~ 171 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----F--GNPQEKDAIKLA 171 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----E--CCTTCCCHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----E--ecCCCCCHHHHH
Confidence 47889999999999887666544322 23334333 3555555444444444333221 0 011112222222
Q ss_pred HHHhcccCCCCCcEEEEecCCcCccc
Q 014085 108 KEALLDPYLSRYSAIIVDEAHERTVH 133 (431)
Q Consensus 108 ~~~~~~~~~~~~~~lViDEah~~~~~ 133 (431)
...+......+++++|+|.+-.....
T Consensus 172 ~~al~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 172 KEGVDYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHHHHHhCCCCEEEEECCCcccch
Confidence 33333322346999999998544333
No 123
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.00 E-value=0.00066 Score=69.83 Aligned_cols=67 Identities=24% Similarity=0.339 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHhC-CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 14 PIASVEKRLVEEVRK-NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~-g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.+-|.+++..++. ....+|+||+|+|||+.+..++.... ..+.+++++.|+-.+++++.+++...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~--~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV--KQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 467899999988775 45889999999999965555444332 23567999999999999998887643
No 124
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.99 E-value=0.00086 Score=57.14 Aligned_cols=39 Identities=31% Similarity=0.427 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCch
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~ 68 (431)
+|+..++.||.|+|||+++...+..... .+..++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeec
Confidence 4778899999999999887655544322 24456666554
No 125
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.94 E-value=0.001 Score=62.82 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=22.9
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+++.++|+|||||||||++..++...
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4577799999999999998887766544
No 126
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.94 E-value=0.0039 Score=57.34 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
+....+...+.+|+.++|.||+|+|||+++..++....
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34556667788999999999999999988877665543
No 127
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.92 E-value=7.7e-05 Score=70.27 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=77.1
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CC----------cEEEEeCchh
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DG----------KLIGVTQPRR 69 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~----------~~v~v~~p~~ 69 (431)
++.+..+.|... +.+.+...+.+|+.+.+.||+||||||++..+.-...... ++ +.+.++....
T Consensus 3 ~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~ 81 (348)
T 3d31_A 3 EIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNY 81 (348)
T ss_dssp EEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTC
T ss_pred EEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCc
Confidence 334444444332 3344455667899999999999999999887764322110 01 1122221110
Q ss_pred -----HHHHHHhH---------------HHHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--C
Q 014085 70 -----VAAVTVAK---------------RVAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--A 127 (431)
Q Consensus 70 -----~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--a 127 (431)
..+.+... .+.+..+.. ++..+.....+..++.+..++..+..+.+++++|| .
T Consensus 82 ~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-----~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 82 SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-----HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-----TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-----hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 01111110 111111110 11112234567777788888888899999999999 5
Q ss_pred CcCccchHHHHHHHHHHHHh
Q 014085 128 HERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 128 h~~~~~~~~~~~~~~~~~~~ 147 (431)
+.+......+..+++++...
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~ 176 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKK 176 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 56666677788888777543
No 128
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.92 E-value=0.0027 Score=59.21 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..+++.||+|+|||+++..+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3589999999999998886666543
No 129
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.88 E-value=0.0041 Score=57.21 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+|+.++++||+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999998877766544
No 130
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.87 E-value=0.0023 Score=60.91 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=52.7
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
..+.+.|+|..++..+...+.+++..+-+.|||+++..++........+..++++.|+...+..+...+..+
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 456789999999988766678999999999999765555443222334567888889998877666554433
No 131
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.87 E-value=0.0014 Score=57.15 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=23.0
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
.+..|+.+++.||+|+|||+++..++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999988877766
No 132
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.86 E-value=0.0037 Score=62.56 Aligned_cols=118 Identities=16% Similarity=0.109 Sum_probs=70.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccC----CcEEEEeCchh-----HHHHHHhHHH-----------HHHhCCc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRR-----VAAVTVAKRV-----------AEESGVE 86 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----~~~v~v~~p~~-----~l~~~~~~~~-----------~~~~~~~ 86 (431)
.+|+.+.|.||+||||||++..+.-......+ ...+.+++... ..+.+..... .... ..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l-~~ 388 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL-KP 388 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT-TT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH-HH
Confidence 57999999999999999998877654322111 11233333211 1111111111 1111 11
Q ss_pred cCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 87 LGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
++.. ....+.....+..++.+..++.....+.+++++|| .|.+......+.++++++..
T Consensus 389 ~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~ 449 (538)
T 1yqt_A 389 LGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 449 (538)
T ss_dssp TTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 1111 11122334567778888888888888999999999 57677777888888887754
No 133
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.86 E-value=0.0064 Score=56.11 Aligned_cols=108 Identities=21% Similarity=0.223 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
.++.++++||+|+||||++..+....... +.++.++ .+.+..+.++...+.+..+..+ .... .......
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~------~~~~-s~~~~~~ 173 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATV------ISHS-EGADPAA 173 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEE------ECCS-TTCCHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcE------EecC-CccCHHH
Confidence 35678899999999998877666544322 3334333 2334333333333333333221 1111 1111111
Q ss_pred hHHHHhcccCCCCCcEEEEecCCcCccchHHHHHHHHHHH
Q 014085 106 RIKEALLDPYLSRYSAIIVDEAHERTVHTDVLLGLLKKVQ 145 (431)
Q Consensus 106 ~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~~ 145 (431)
.....+......+++++|+||+-. ....+.++..++...
T Consensus 174 v~~~al~~a~~~~~dvvIiDtpg~-~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 174 VAFDAVAHALARNKDVVIIDTAGR-LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCC-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCc-hhhHHHHHHHHHHHH
Confidence 112223333456789999999863 334445555554443
No 134
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.83 E-value=0.00083 Score=60.70 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+.+. +.+|+.++++|||||||||++..++...
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3445555 7899999999999999999887776543
No 135
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.0021 Score=64.27 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=69.7
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhccccc-----CCcEEEEeCch-----hHHHHHHhHHHH-----------HHhC
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-----DGKLIGVTQPR-----RVAAVTVAKRVA-----------EESG 84 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~-----~~~~v~v~~p~-----~~l~~~~~~~~~-----------~~~~ 84 (431)
+.+|+.+.|.||+||||||++..+.-...... .+..+.+++.. ...+.+...... ...-
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 35799999999999999999877764432211 12223333211 111112111100 0000
Q ss_pred CccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHHh
Q 014085 85 VELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQNA 147 (431)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~~ 147 (431)
..++. .....+.....+..++.+.+++..+..+.+++++|| .+.+......+..+++++...
T Consensus 371 ~~~~l-~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~ 434 (538)
T 3ozx_A 371 KRLNL-HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE 434 (538)
T ss_dssp TTTTG-GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHcCC-HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 00010 011122334567777888888888889999999999 566666777788888877643
No 136
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.81 E-value=0.002 Score=65.45 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=54.8
Q ss_pred ccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 11 KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 11 ~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
..+.+.++|+.++..+...+.+++.++-|+|||+++..++........+..++++.++...+......+..+..
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 34678999999998876678899999999999976654444333333455788888999888777766655543
No 137
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.77 E-value=0.0017 Score=66.49 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.+.+.|.+++..+..+...+|+||+|+|||+++..++..... ..+.+++++.|+..++++..+++..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~-~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHT-SSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 467899999999888889999999999999766555433221 1356799999999999888887654
No 138
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.75 E-value=0.0061 Score=56.83 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+|+.+.++||+||||||++..+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57789999999999998887776543
No 139
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.71 E-value=0.0082 Score=52.83 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+..+++.||+|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999887666544
No 140
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.70 E-value=0.00062 Score=62.88 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=32.3
Q ss_pred CCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHHH
Q 014085 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKKV 144 (431)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~~ 144 (431)
...+..++.+..++..++.+.+++++||. +.+......+...++++
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 35677788888888888889999999995 33444445555555554
No 141
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.68 E-value=0.0012 Score=66.95 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=36.7
Q ss_pred hhHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.++. .++.+.+...+.+|+.+.++||+||||||++..+...
T Consensus 342 i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344445555543 4566777778889999999999999999998777643
No 142
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.64 E-value=0.006 Score=61.03 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=36.4
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
..+..++.+..++..+..+.+++++|| +|.+......+..+++++..
T Consensus 158 ~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 206 (538)
T 1yqt_A 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206 (538)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 345566666666667788999999999 67777888888888888754
No 143
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.62 E-value=0.0021 Score=55.00 Aligned_cols=41 Identities=27% Similarity=0.254 Sum_probs=29.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~ 69 (431)
..|+..++.||.|||||+.+...+.+.. ..+.+++++.|..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK--IAKQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEecc
Confidence 3577889999999999977766665543 2356677776653
No 144
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0088 Score=60.59 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccC----CcEEEEeCchh-----HHHHHHh--------------HHHHHHhCC
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRR-----VAAVTVA--------------KRVAEESGV 85 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----~~~v~v~~p~~-----~l~~~~~--------------~~~~~~~~~ 85 (431)
|+.+.|.||+||||||++..+.-......+ ...+.+++-.. ..+.+.. ..+.+..+.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l 457 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI 457 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence 377999999999999998777654332211 11233322110 0111110 011111111
Q ss_pred ccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 86 ELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
. ....+.....+..++.+..++..+..+.+++++|| ++.+......+..+++++..
T Consensus 458 ~-----~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~ 515 (608)
T 3j16_B 458 D-----DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL 515 (608)
T ss_dssp T-----TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH
T ss_pred h-----hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 11122334577888888888888899999999999 56666667778888887754
No 145
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0019 Score=67.78 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
.+.+.|.+++..+..+...+|.||+|+|||+.+..++...... .+.+++++.|+..++++..+++...
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4678999999999888899999999999996654444322111 2457999999999999998887653
No 146
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.59 E-value=0.00073 Score=62.28 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=36.2
Q ss_pred hHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 5 KILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 5 ~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+..+.++ .++.+.+...+.+|+.+.|+||+||||||++..++...
T Consensus 103 ~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 103 NYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3334444444 45677788888899999999999999999887776554
No 147
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.58 E-value=0.0079 Score=54.76 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.6
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+..+++.||+|+|||+++..+....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 356789999999999998886665543
No 148
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.53 E-value=0.00072 Score=56.05 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=33.3
Q ss_pred HhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 8 QQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 8 ~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..+.+.-......+...+.+|+.+.+.||+||||||++..+....
T Consensus 12 ~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 12 FSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3344444344555566666899999999999999999987776554
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.52 E-value=0.022 Score=52.22 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+++.+.++|++|+||||++..+....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46678889999999998876666443
No 150
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.52 E-value=0.0046 Score=62.72 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=69.7
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhcccccC----CcEEEEeCchh-----HHHHHHhH--------------HHHHH
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD----GKLIGVTQPRR-----VAAVTVAK--------------RVAEE 82 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~----~~~v~v~~p~~-----~l~~~~~~--------------~~~~~ 82 (431)
+.+|+.+.|.||+||||||++..+.-......+ ...+.+++... ..+.+... .+.+.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 357999999999999999998877644322111 11233332111 11111111 11111
Q ss_pred hCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 83 SGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
.+.. ....+.....+..++.+..++..+..+.+++++|| +|.+......+..+++++..
T Consensus 459 ~~l~-----~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 519 (607)
T 3bk7_A 459 LGII-----DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519 (607)
T ss_dssp HTCT-----TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCc-----hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 1111 11112234567778888888888889999999999 67777777888888887754
No 151
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.50 E-value=0.0032 Score=66.01 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHH
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAE 81 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~ 81 (431)
.+.+.|.+++..+..+...+|+||+|+|||+++..++..... ..+.+++++.|+-.++++..+++..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~-~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLAR-QGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHT-TCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 467899999999988889999999999999766555433221 1356789999999999888887653
No 152
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.44 E-value=5.7e-05 Score=67.98 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=37.4
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+++++.+..+.|+..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 1 M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp -CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CceEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455666666666544444455566779999999999999999998777653
No 153
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.41 E-value=0.0019 Score=56.21 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 19 Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..++..+.+|+.+.+.||+||||||++..+.-.
T Consensus 12 ~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 12 QKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567778899999999999999999998777654
No 154
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.37 E-value=7.1e-05 Score=67.65 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=37.3
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+..++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45666666666544445556667789999999999999999998777643
No 155
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.37 E-value=8e-05 Score=66.44 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=37.2
Q ss_pred CchhhHHHhhccCC--hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 1 MPRQKILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|.++++.+..+.++ ..++.+.+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 1 M~~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp -CCEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44566666666665 23344455566779999999999999999998777644
No 156
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.36 E-value=0.057 Score=46.45 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+++...+..+ ..+++.||+|+|||+++..+...
T Consensus 24 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 24 EVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4444555555554 35999999999999887665543
No 157
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.32 E-value=0.025 Score=52.04 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+|+.+.++||+||||||++..+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999998887776554
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.32 E-value=0.031 Score=48.86 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+.+...+..++ .+++.||+|+|||+++..+...
T Consensus 30 ~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 30 HVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455555555555 7999999999999887666544
No 159
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.30 E-value=0.0035 Score=60.55 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=49.1
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhHHH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRIKE 109 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (431)
+..++.|+.|||||+.+...+.. ...+++.|+..++....+.+... +.. .........+..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT~~aa~~l~~kl~~~-~~~-----------~~~~~~V~T~ds 222 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF-------EEDLILVPGRQAAEMIRRRANAS-GII-----------VATKDNVRTVDS 222 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT-------TTCEEEESCHHHHHHHHHHHTTT-SCC-----------CCCTTTEEEHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCCHHHHHHHHHHhhhc-Ccc-----------ccccceEEEeHH
Confidence 46789999999999877555432 24578888999988877765321 110 000011122333
Q ss_pred HhcccCC---CCCcEEEEecCCcC
Q 014085 110 ALLDPYL---SRYSAIIVDEAHER 130 (431)
Q Consensus 110 ~~~~~~~---~~~~~lViDEah~~ 130 (431)
++.++.. ...+++|+|||...
T Consensus 223 fL~~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 223 FLMNYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp HHHTTTSSCCCCCSEEEEETGGGS
T ss_pred hhcCCCCCCCCcCCEEEEeCcccC
Confidence 3333322 24899999999643
No 160
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.026 Score=56.25 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+++.||+|+|||+++..+....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999998887766554
No 161
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.29 E-value=0.0099 Score=57.97 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
+..+++.||+|+|||+++..+.........+..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45899999999999988766654432222233455544
No 162
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.28 E-value=0.011 Score=59.89 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=35.9
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
..+..++.+..++..++.+.+++++|| +|.+......+..+++++..
T Consensus 228 ~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~ 276 (607)
T 3bk7_A 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276 (607)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh
Confidence 345556666666666788999999999 67777777888888888754
No 163
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.22 E-value=0.019 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++|.||+|+|||+++..+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999998887666543
No 164
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.19 E-value=0.0034 Score=59.77 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=23.8
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+|+.++++|||||||||++..++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5688999999999999999887776544
No 165
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.17 E-value=0.0063 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
....+++.||+|+|||+++..+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999998876665543
No 166
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.15 E-value=0.01 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=19.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.++++.||+|+|||+++..+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999877655433
No 167
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.15 E-value=0.011 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..+++.||+|+|||+++..+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998887666543
No 168
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.13 E-value=0.00011 Score=66.41 Aligned_cols=50 Identities=26% Similarity=0.405 Sum_probs=36.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|.-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 45666666666543444455666779999999999999999998777633
No 169
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.12 E-value=0.055 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.|+.++++||+||||||++..+....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 46789999999999998887766543
No 170
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.08 E-value=0.035 Score=52.26 Aligned_cols=26 Identities=38% Similarity=0.629 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+|+.+.++||+||||||++..+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 56789999999999998887766554
No 171
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.06 E-value=0.00013 Score=66.32 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=35.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|...++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45555556655433344445566779999999999999999998777654
No 172
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.05 E-value=0.018 Score=52.33 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.9
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
.+.+|+.++|.||+|||||+++..++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999988776664
No 173
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.013 Score=59.26 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=31.9
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~ 144 (431)
..+..++.+..++..+..+.+++++|| ++........+..+++++
T Consensus 221 ~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l 267 (608)
T 3j16_B 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267 (608)
T ss_dssp TCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG
T ss_pred HCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence 445556666666666788899999999 555566666777777665
No 174
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.99 E-value=0.011 Score=50.35 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCch
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~ 68 (431)
.|+-.++.||.|||||+.+...+.+.... +++++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 57788999999999996665555554332 4567777665
No 175
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.99 E-value=0.008 Score=52.02 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~ 70 (431)
.|...++.||-|||||+.+...+.+... .+++++++.|...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEeccC
Confidence 4667789999999999777666655432 2566777777553
No 176
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.97 E-value=0.069 Score=49.73 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+++...+..|..++|.||.|+|||+++..+...
T Consensus 19 ~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 19 EESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 344555555556789999999999999888777654
No 177
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.97 E-value=0.00013 Score=65.16 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=35.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|...++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45555666666443344445566779999999999999999998777643
No 178
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.95 E-value=0.0026 Score=55.72 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+...+.+|+.++|+||+||||||++..+....
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567778899999999999999999987776544
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.94 E-value=0.015 Score=54.11 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+++.||+|+|||+++..+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999998877665543
No 180
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.93 E-value=0.0017 Score=57.36 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
..|..+...+.+|+.++|+||+||||||++..+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4677777788899999999999999999987776
No 181
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.93 E-value=0.014 Score=60.30 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=35.2
Q ss_pred CChhHhHHHHhcccCCCCCc--EEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 101 TSTSTRIKEALLDPYLSRYS--AIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~--~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
.+..++.+..++..+..+.+ ++++|| ++.+......+.++++++..
T Consensus 203 LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~ 252 (670)
T 3ux8_A 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD 252 (670)
T ss_dssp SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 45555666666666677777 999999 78888888999999988753
No 182
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.90 E-value=0.0037 Score=59.27 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
+.+...+.+|+.++|+|||||||||++..++....
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 67778888999999999999999999887766543
No 183
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.90 E-value=0.00016 Score=65.49 Aligned_cols=49 Identities=29% Similarity=0.416 Sum_probs=36.4
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
++++.+..+.|.-.++.+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566666666654444455566677999999999999999999877763
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.90 E-value=0.011 Score=54.51 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.0
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..++.+++.||+|+|||+++..+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 457889999999999998887666554
No 185
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.89 E-value=0.015 Score=55.83 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=21.2
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..|+.+.|.||+|||||+++..++..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 36789999999999999888755533
No 186
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.014 Score=58.42 Aligned_cols=45 Identities=9% Similarity=0.010 Sum_probs=33.6
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHH
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKV 144 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~ 144 (431)
..+..++.+..++.....+.+++++|| ++........+..+++++
T Consensus 138 ~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l 184 (538)
T 3ozx_A 138 ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL 184 (538)
T ss_dssp GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 345556666666666788999999999 666667777788888776
No 187
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.88 E-value=0.0036 Score=54.29 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=22.2
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.+|+.++|+||+||||||++..+.-.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 37889999999999999999998776644
No 188
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.84 E-value=0.00017 Score=65.83 Aligned_cols=50 Identities=24% Similarity=0.213 Sum_probs=35.9
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+-.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34555555655444444555666779999999999999999998777643
No 189
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.83 E-value=0.0067 Score=62.30 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
.+++-|.+++. ..+..++|.|+.|||||+.+..-+..... ......++++.++..++.++.+++....+
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 57788999987 34667999999999999554333322111 11235788889999999999998887754
No 190
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.82 E-value=0.073 Score=48.96 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
+|+.+.++||+||||||++..+.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 578999999999999988877765543
No 191
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.80 E-value=0.039 Score=53.98 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 19 Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
..++..-+..|+.++|.|++|+|||+++..++....
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334444566789999999999999988777766543
No 192
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.79 E-value=0.0095 Score=53.93 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.5
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+++.||+|+|||+++..+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999887666554
No 193
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.76 E-value=0.037 Score=47.46 Aligned_cols=20 Identities=40% Similarity=0.713 Sum_probs=15.8
Q ss_pred EEEEEcCCCCChhccHhHHh
Q 014085 31 ILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~ 50 (431)
..+++|+.|||||+.+...+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999997654443
No 194
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.75 E-value=0.041 Score=51.98 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.+...+..|+ .+++.||+|+|||+++..+...
T Consensus 24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444555554 5899999999999887666544
No 195
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.02 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+++.||+|+|||+++..+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999887666654
No 196
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.74 E-value=0.0037 Score=55.95 Aligned_cols=51 Identities=24% Similarity=0.194 Sum_probs=31.9
Q ss_pred hhhHHHh-hccC-ChHHHHHHHHHHHhC---CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 3 RQKILQQ-RKSL-PIASVEKRLVEEVRK---NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 3 ~~~~~~~-~~~~-~~~~~Q~~~~~~~~~---g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++++.+. .+.| ...++.+.+...+.+ |+.++++|++||||||++..+....
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4566666 6667 555677788888888 9999999999999999887776544
No 197
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.74 E-value=0.012 Score=59.65 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCChhHhHHHHhcccCCCCCcEEEEecC--CcCccchHHHHHHHHH
Q 014085 99 DRTSTSTRIKEALLDPYLSRYSAIIVDEA--HERTVHTDVLLGLLKK 143 (431)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lViDEa--h~~~~~~~~~~~~~~~ 143 (431)
...+..++++..+++..+.+.+++++||. +.+......+.+.+++
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~ 524 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR 524 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 45678888888888888899999999995 3333334445555544
No 198
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.74 E-value=0.0056 Score=60.75 Aligned_cols=37 Identities=35% Similarity=0.388 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..+.+...+..|++++++|||||||||++..++...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445677778899999999999999999887765443
No 199
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.73 E-value=0.0043 Score=53.40 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.5
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+|+.++++||+||||||++..+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999988776654
No 200
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.72 E-value=0.0044 Score=63.01 Aligned_cols=46 Identities=26% Similarity=0.270 Sum_probs=31.6
Q ss_pred HHhhccCCh-HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 7 LQQRKSLPI-ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 7 ~~~~~~~~~-~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+..+.++. .++.+.+...+.+|+.+.++||+||||||++..+...
T Consensus 358 ~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 358 KNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 334444432 2334445556678999999999999999998777644
No 201
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.71 E-value=0.0091 Score=66.31 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=35.0
Q ss_pred hHHHhhccCChH---HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 5 KILQQRKSLPIA---SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 5 ~~~~~~~~~~~~---~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+....||.. ++.+.+...+.+|+.+.|+|||||||||++..+....
T Consensus 1078 ~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1078 IFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 334445555432 3455666677899999999999999999987776443
No 202
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.69 E-value=0.0049 Score=52.08 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=22.6
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..|+.++++||+||||||++..+....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999987776543
No 203
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.68 E-value=0.02 Score=54.09 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+++.||+|+|||+++..+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3569999999999998887666554
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.64 E-value=0.0032 Score=59.15 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 6 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 6 ~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+..+.+....+.+.+...+.+|..+.++||+||||||++..+...
T Consensus 32 ~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 32 SRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred eCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33334334333445556666678999999999999999998777644
No 205
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.063 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
++++.||+|+|||+++..+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999988866655
No 206
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.54 E-value=0.01 Score=63.01 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=68.4
Q ss_pred HHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc--ccc-cCCcEEEEeCch------hHHHHH-H----------hHHHH
Q 014085 21 RLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA--GFC-RDGKLIGVTQPR------RVAAVT-V----------AKRVA 80 (431)
Q Consensus 21 ~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~--~~~-~~~~~v~v~~p~------~~l~~~-~----------~~~~~ 80 (431)
.+...+.+|+.+.|+||+||||||++..+..-. +.. .....+.+++.. ...+.+ . ...+.
T Consensus 453 ~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L 532 (986)
T 2iw3_A 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKL 532 (986)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHH
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHH
Confidence 344456789999999999999999987776211 000 011123333211 001111 0 11111
Q ss_pred HHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHH
Q 014085 81 EESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKK 143 (431)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~ 143 (431)
...+.. .....+.....+..++.+..+....+.+.+++++|| .|.+......+.++++.
T Consensus 533 ~~lgL~----~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 533 IEFGFT----DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHTTCC----HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHcCCC----hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 111210 001112234567777888777777888999999999 67777777888888775
No 207
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=95.53 E-value=0.076 Score=48.86 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=71.2
Q ss_pred HHHHHHhhcCCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc
Q 014085 243 ITIFQVHLDEAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI 322 (431)
Q Consensus 243 ~~~~~~~~~~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~ 322 (431)
..++..... .+.+++||++..+.-+-+.+.+... ++...-+.|.....+++ -++....+.+.|..
T Consensus 115 ~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~---------~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 115 RDLINLVQE-YETETAIVCRPGRTMDLLEALLLGN---------KVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTS---------SCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcC---------CCceEeCCCCchhhhhh-----cccCCceEEEEECC
Confidence 334444333 3678999999999888888877664 88888899985443221 12455566555776
Q ss_pred cccccc-----cCCcEEEEeCccccceeecCCCCceeeeeeecCHHHHHHhhcccCCCC-----CcEEEEeeChhh
Q 014085 323 AETSVT-----IPGIKYVIDPGFVKARLYDPVKGMESLLVVPISKAQALQRSGRAGREG-----PGKCFRLYPENE 388 (431)
Q Consensus 323 ~~~Gvd-----ip~v~~VI~~~~~~~~~~d~~~~~~~~~~~p~s~~~~~qr~GR~gR~~-----~G~~~~l~~~~~ 388 (431)
..-|+| ....+.||- ||+..+ |.+ ..+|.+-|+.|.+ +=.+|+|++...
T Consensus 180 g~~gin~~~~nl~~aD~VI~--------~DsdwN-------p~~--d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLIC--------LDTTVD-------TSQ--KDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEE--------CSTTCC-------TTS--HHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCCCcCcccccCCCCCEEEE--------ECCCCC-------CCC--hHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 666675 567888886 887765 322 2567666666653 335999987553
No 208
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.51 E-value=0.026 Score=52.36 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++.++++||+|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35578899999999998876665443
No 209
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.49 E-value=0.0047 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=20.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..|+.++++||+||||||++..+...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36788999999999999998777654
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.48 E-value=0.017 Score=54.80 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..++|.||+|+|||+++..+....
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999998887766543
No 211
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.47 E-value=0.0098 Score=57.38 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=22.5
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+|+.++|+|||||||||++..++...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999887776544
No 212
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.47 E-value=0.00031 Score=62.87 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=31.8
Q ss_pred HHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 6 ILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 6 ~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+..+.|+ -.++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 334444442 22233344556678999999999999999998777643
No 213
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.47 E-value=0.00038 Score=63.35 Aligned_cols=50 Identities=22% Similarity=0.203 Sum_probs=35.3
Q ss_pred hhhHHHhhccCCh---HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~---~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455555555543 2344445566779999999999999999998777643
No 214
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.45 E-value=0.17 Score=48.80 Aligned_cols=91 Identities=24% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (431)
++.++++|++|+||||++..+....... +.++.++ -+.+..+.++...+....+..+ +. ... .......
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v---~~---~~~-~~~p~~i 168 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE---VMD-GESPESI 168 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE---CCT-TCCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccccCchhHHHHHHhcccCCccE---Ee---cCC-CCCHHHH
Confidence 4578889999999998876666544322 3334433 2444444333333333333221 10 011 1112222
Q ss_pred HHHHhcccCCCCCcEEEEecCC
Q 014085 107 IKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 107 ~~~~~~~~~~~~~~~lViDEah 128 (431)
....+......+++++|+|=+-
T Consensus 169 ~~~~l~~~~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 169 RRRVEEKARLEARDLILVDTAG 190 (425)
T ss_dssp HHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEcCCC
Confidence 2223322113568999999764
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.41 E-value=0.0069 Score=53.01 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=22.7
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+|+.++|+||+||||||++..+....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999987776544
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.31 E-value=0.021 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+++.||+|+|||+++..+....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 569999999999998876665543
No 217
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.31 E-value=0.023 Score=59.35 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=67.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcc-ccccccCCc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA-ETSVTIPGI 332 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~-~~Gvdip~v 332 (431)
+.+++|.+||+.-|...++.+.+.+... ++.+..+||+++..+|..+.+.+++|..+|+|+|... ...+++.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 5789999999999999999998876432 6789999999999999999999999999999999843 456778888
Q ss_pred EEEE
Q 014085 333 KYVI 336 (431)
Q Consensus 333 ~~VI 336 (431)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8888
No 218
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.0061 Score=59.64 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=33.5
Q ss_pred hhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 3 RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 3 ~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++++.+..+.++ .+...+.+|+.+.|+||+||||||++..+.-.
T Consensus 118 mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 118 MKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred hhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 455555555543 57777889999999999999999988776644
No 219
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.29 E-value=0.02 Score=49.99 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~ 70 (431)
.|+..++.||-|||||+.+...+.+... .+++++++.|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecCC
Confidence 5788899999999999776666555432 3566777777653
No 220
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.29 E-value=0.011 Score=54.87 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=22.3
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+|+.+.|.||+||||||++..+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456889999999999999988766544
No 221
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.29 E-value=0.0073 Score=53.69 Aligned_cols=27 Identities=33% Similarity=0.644 Sum_probs=23.2
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
.+.+|+.+++.||+||||||++..++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466899999999999999988877663
No 222
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.28 E-value=0.033 Score=61.90 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=67.3
Q ss_pred HHHhhccCCh---HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccC-----C------------cEEEEe
Q 014085 6 ILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRD-----G------------KLIGVT 65 (431)
Q Consensus 6 ~~~~~~~~~~---~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~-----~------------~~v~v~ 65 (431)
+.+....|+. .++.+.+...+.+|+.+.|+||+||||||++..++.......+ + ..+-++
T Consensus 418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v 497 (1321)
T 4f4c_A 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVV 497 (1321)
T ss_dssp EEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhccccc
Confidence 3344444542 2344556666779999999999999999998777754432210 1 012222
Q ss_pred C------------------c--hhHHHHHHhHH-----HHHHhCCccCCeEeEeEeecCCCChhHhHHHHhcccCCCCCc
Q 014085 66 Q------------------P--RRVAAVTVAKR-----VAEESGVELGQRVGYSIRFDDRTSTSTRIKEALLDPYLSRYS 120 (431)
Q Consensus 66 ~------------------p--~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (431)
+ | +..-+.+..+. +...........+| ......+..++++..+++..+.+.+
T Consensus 498 ~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vG---e~G~~LSGGQkQRiaiARAl~~~~~ 574 (1321)
T 4f4c_A 498 SQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVG---DRGTQLSGGQKQRIAIARALVRNPK 574 (1321)
T ss_dssp CSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEES---SSSCCCCHHHHHHHHHHHHHTTCCS
T ss_pred CCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEec---CCCCCCCHHHHHHHHHHHHHccCCC
Confidence 2 1 01111111110 11111112222333 1224578888999899999999999
Q ss_pred EEEEecC
Q 014085 121 AIIVDEA 127 (431)
Q Consensus 121 ~lViDEa 127 (431)
++++||+
T Consensus 575 IliLDE~ 581 (1321)
T 4f4c_A 575 ILLLDEA 581 (1321)
T ss_dssp EEEEEST
T ss_pred EEEEecc
Confidence 9999996
No 223
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.25 E-value=0.0057 Score=52.00 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=23.0
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+|+.++++||+||||||++..+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3567899999999999999998777554
No 224
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.23 E-value=0.01 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++.+++.||+|+|||+++..+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 36799999999999998886665543
No 225
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.20 E-value=0.012 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=21.9
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+|+.+.|+||+||||||++..+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56788999999999999988766654
No 226
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.17 E-value=0.094 Score=48.34 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCC--EEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~--~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.+...+..|+ ++++.||+|+|||+++..+...
T Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3344444455554 7999999999999877655543
No 227
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.16 E-value=0.05 Score=50.96 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+.+...+..| .++++.||+|+|||+++..+...
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3445566666666 56999999999999887666544
No 228
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.14 E-value=0.13 Score=47.59 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.+...+..|+ .+++.||+|+|||+++..+...
T Consensus 34 ~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 34 DKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3344444455554 4677788999999887665544
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.13 E-value=0.0096 Score=51.60 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=22.6
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+|+.++++||+||||||++..+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 468899999999999999887776543
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.08 E-value=0.0095 Score=51.24 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.4
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+|+.++++||+||||||++..+...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999988776544
No 231
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.05 E-value=0.0079 Score=53.06 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=35.8
Q ss_pred hhhHHHhhccCC--hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 3 RQKILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 3 ~~~~~~~~~~~~--~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++++.+..+.++ ..++.+.+...+.+|+.+.|.||+||||||++..+.-..
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455555666663 123444455567799999999999999999987776443
No 232
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.05 E-value=0.033 Score=53.30 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
....+++.||+|+|||+++..+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999887666544
No 233
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.01 E-value=0.05 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++++.||+|+|||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 57999999999999887666444
No 234
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.00 E-value=0.15 Score=49.68 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=25.1
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
+.--+..|+.++|.|++|+|||+++..++....
T Consensus 193 ~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 333455788999999999999987776665543
No 235
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.00 E-value=0.011 Score=50.75 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+.+...+.+++.++++||+||||||++..+....
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 445666777889999999999999998887776544
No 236
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.99 E-value=0.011 Score=50.53 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=22.8
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..|+.++|+||+|+|||+++..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 478999999999999999887776543
No 237
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.98 E-value=0.0083 Score=53.59 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 19 Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344556678999999999999999998777644
No 238
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.96 E-value=0.15 Score=47.39 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
...+++.. +.. ..++|.||.|+|||+++..+....
T Consensus 20 ~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 20 KEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 34444444 444 799999999999998887776543
No 239
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.94 E-value=0.048 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+-+++.||+|+|||.++..++...
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh
Confidence 4679999999999997776665554
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.92 E-value=0.0091 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
|+.++++||+||||||++..+....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999987776543
No 241
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.90 E-value=0.019 Score=59.31 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
.+++-|.+++.. .+..++|.|+.|||||+.+..-+..... ......+++++++..++.++.+++....+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 467889998875 4678999999999999554332221111 11245788999999999999998877654
No 242
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.88 E-value=0.23 Score=45.35 Aligned_cols=92 Identities=23% Similarity=0.300 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEe--CchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVT--QPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTR 106 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~--~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (431)
++.++++|++|+||||++..+....... +.++.++ .+.+..+.++...+....+..+ .. ..........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v---~~----~~~~~~p~~~ 168 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPV---YG----EPGEKDVVGI 168 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCE---EC----CTTCCCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEE---Ee----cCCCCCHHHH
Confidence 4478889999999998876666443322 3334433 2333333333333333333221 00 0111122222
Q ss_pred HHHHhcccCCCCCcEEEEecCCc
Q 014085 107 IKEALLDPYLSRYSAIIVDEAHE 129 (431)
Q Consensus 107 ~~~~~~~~~~~~~~~lViDEah~ 129 (431)
+...+......+++++++|=+-.
T Consensus 169 ~~~~l~~~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 169 AKRGVEKFLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHhCCCCEEEEeCCCC
Confidence 22233221225789999998753
No 243
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.87 E-value=0.0094 Score=53.26 Aligned_cols=31 Identities=42% Similarity=0.590 Sum_probs=25.1
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3345668999999999999999998776544
No 244
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.86 E-value=0.027 Score=52.40 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3689999999999998876666543
No 245
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.86 E-value=0.037 Score=47.80 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=27.0
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhH
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~ 70 (431)
..|...+++||-|||||+.+...+.+... .+..++++.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccC
Confidence 46788899999999999855444444322 2456777776543
No 246
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.86 E-value=0.0008 Score=64.32 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=34.6
Q ss_pred hhHHHhhccCC--hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhh
Q 014085 4 QKILQQRKSLP--IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 4 ~~~~~~~~~~~--~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+++.+..+.|+ ..++.+.+...+.+|+.+.|.||+||||||++..+.-
T Consensus 20 i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 44555556662 2334445556677999999999999999999877764
No 247
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.85 E-value=0.0096 Score=53.61 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=33.7
Q ss_pred hhHHHhhccCCh---HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 4 QKILQQRKSLPI---ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 4 ~~~~~~~~~~~~---~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+++.+..+.|+. .++.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 18 l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444455555542 1233445556779999999999999999998777644
No 248
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.83 E-value=0.012 Score=55.52 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=23.0
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..|+.+.|.||+|||||+++..++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467889999999999998887776654
No 249
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.82 E-value=0.05 Score=53.60 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=20.9
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.....+++.||+|+|||+++..+....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 345689999999999998776665443
No 250
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.80 E-value=0.019 Score=46.44 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+.+-.....+.++++.||+|+|||+++..+...
T Consensus 13 ~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 13 YRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp HHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 33444444567789999999999999777655443
No 251
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.78 E-value=0.05 Score=55.24 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHhC--CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhH
Q 014085 14 PIASVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAK 77 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~--g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~ 77 (431)
.++.-|.+++..+.. ....+++|+-|.|||+++...+.... . .++|..|+...+....+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~-~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----G-RAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----S-CEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----h-CcEEECCCHHHHHHHHH
Confidence 346678899888876 45689999999999988877776653 1 35778888776654433
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.73 E-value=0.012 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=21.3
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+|+.+.|.||+||||||++..+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999988666544
No 253
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.72 E-value=0.011 Score=53.48 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 19 EKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 19 Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+...+.+|+.+.|.||+||||||++..+.-.
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3444556779999999999999999998776643
No 254
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.72 E-value=0.026 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+.+++.||+|+|||+++..+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999998887665543
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.70 E-value=0.014 Score=54.70 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=30.4
Q ss_pred hhccCChHHHHHHHHHHHhCC-------CEEEEEcCCCCChhccHhHHhhhc
Q 014085 9 QRKSLPIASVEKRLVEEVRKN-------DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 9 ~~~~~~~~~~Q~~~~~~~~~g-------~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+...+......+.+...+..| +.+++.||+|+|||+++..+....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344444445555555555544 789999999999998886665543
No 256
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.69 E-value=0.019 Score=55.97 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=23.0
Q ss_pred HHHHHhCCC--EEEEEcCCCCChhccHhHHhhhc
Q 014085 22 LVEEVRKND--ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 22 ~~~~~~~g~--~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+...+..++ ++++.||+|+|||+++..+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 334444554 69999999999998876665543
No 257
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.62 E-value=0.012 Score=52.37 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++...+...+.+|..+.|.||+||||||++..+...
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455667788889999999999999999988766543
No 258
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.58 E-value=0.045 Score=54.61 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=52.1
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCcc-----CCeEeEeEeecC
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVEL-----GQRVGYSIRFDD 99 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 99 (431)
.+.+|+.++|.||+|||||+++..++...... +..++++.+... ..+...... ..+... .....+......
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~-~~~l~~~~~-~~g~~~~~~~~~g~~~~~~~~p~ 352 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES-RAQLLRNAY-SWGMDFEEMERQNLLKIVCAYPE 352 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC-HHHHHHHHH-TTSCCHHHHHHTTSEEECCCCGG
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC-HHHHHHHHH-HcCCCHHHHHhCCCEEEEEeccc
Confidence 45678999999999999998887776544322 333333322111 112222211 111110 001111111222
Q ss_pred CCChhHhHHHHhcccCCCCCcEEEEec
Q 014085 100 RTSTSTRIKEALLDPYLSRYSAIIVDE 126 (431)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lViDE 126 (431)
..+...+++.++......+.+++|+|=
T Consensus 353 ~LS~g~~q~~~~a~~l~~~p~llilDp 379 (525)
T 1tf7_A 353 SAGLEDHLQIIKSEINDFKPARIAIDS 379 (525)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 345566666666665677899999993
No 259
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.58 E-value=0.15 Score=47.46 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=24.8
Q ss_pred HHHHHHHH----HHHhCCC---EEEEEcCCCCChhccHhHHhhh
Q 014085 16 ASVEKRLV----EEVRKND---ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 16 ~~~Q~~~~----~~~~~g~---~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+|+|++++ ..+..|+ .+++.||.|+|||+++..+...
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 34455444 3444554 5899999999999777666543
No 260
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.51 E-value=0.07 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+++.||+|+|||+++..+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999887666543
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.44 E-value=0.012 Score=51.62 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.4
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+|+.+.|.||+||||||++..++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999988777653
No 262
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.43 E-value=0.021 Score=46.11 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
.+.+.+......+.++++.||+|+|||+++..+.
T Consensus 15 ~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 15 EMNREVEAAAKRTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp HHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGC
T ss_pred HHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHH
Confidence 3444444455677899999999999997765443
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.34 E-value=0.02 Score=49.12 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+|+.++++||+||||||++..+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999887775543
No 264
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.32 E-value=0.071 Score=49.00 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=22.2
Q ss_pred HHHHHHHhCCC--EEEEEcCCCCChhccHhHHhhh
Q 014085 20 KRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 20 ~~~~~~~~~g~--~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+...+..++ ++++.||+|+|||+++..+...
T Consensus 27 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 27 QRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp HHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHH
Confidence 33333444443 5999999999999777555443
No 265
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.31 E-value=0.02 Score=49.06 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+-....+|+.+++.||+||||||++..+....
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444455678999999999999998887765543
No 266
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.28 E-value=0.015 Score=53.17 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=23.3
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.+|+.+.|.||+||||||++..+.-.
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457899999999999999998777644
No 267
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.20 E-value=0.11 Score=57.60 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=33.3
Q ss_pred HHHhhccCChH---HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 6 ILQQRKSLPIA---SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 6 ~~~~~~~~~~~---~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+..+.|+.. ++.+.+...+.+|+.+.++|||||||||++..+...
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33444555432 344556666779999999999999999988776644
No 268
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.18 E-value=0.091 Score=48.35 Aligned_cols=29 Identities=17% Similarity=0.078 Sum_probs=20.6
Q ss_pred HHHHhCCC--EEEEEcCCCCChhccHhHHhh
Q 014085 23 VEEVRKND--ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 23 ~~~~~~g~--~~vi~apTGsGKT~~~~~~~~ 51 (431)
...+..|+ .+++.||.|+|||+++..+..
T Consensus 10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 10 KRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33445554 789999999999977655443
No 269
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.17 E-value=0.039 Score=60.92 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=49.3
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccH-hHHhhhcccc---cCCcEEEEeCchhHHHHHHhHHHHHH
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQL-PQFLFHAGFC---RDGKLIGVTQPRRVAAVTVAKRVAEE 82 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~-~~~~~~~~~~---~~~~~v~v~~p~~~l~~~~~~~~~~~ 82 (431)
....++-|.+++.. .+++++|.|.-|||||+.+ ..++...... .....+++++++..++.++.+++...
T Consensus 8 ~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp --CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 35678889999875 4889999999999999554 3333222211 13457999999999999988887664
No 270
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.14 E-value=0.04 Score=57.28 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 14 PIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 14 ~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
.+++-|.+++.. .+..++|.|+.|||||+.+-.-+..... ......+++++.+..++.++.+++....+
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 577889998875 3567899999999999554332221111 11235788899999999999888876643
No 271
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.13 E-value=0.051 Score=51.09 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=22.5
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..|+.++|.||+|||||+++..++...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3367899999999999998877766554
No 272
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.12 E-value=0.011 Score=55.57 Aligned_cols=50 Identities=16% Similarity=-0.008 Sum_probs=36.3
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++..+..+.+. .......+ ..+.+|+.+.|.||+|+||||++..++...
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445555566664 33445555 677799999999999999999987776654
No 273
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.12 E-value=0.073 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.2
Q ss_pred CCEEEE--EcCCCCChhccHhHHhhh
Q 014085 29 NDILII--VGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi--~apTGsGKT~~~~~~~~~ 52 (431)
+..++| .||.|+|||+++..+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457888 899999999888776644
No 274
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.10 E-value=0.13 Score=47.19 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCC--EEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~--~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.+...+..++ ++++.||+|+|||+++..+...
T Consensus 29 ~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 29 TIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp HHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3444455555553 4999999999999877655443
No 275
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.08 E-value=0.09 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++++|++|+||||++..+....
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999998876666543
No 276
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.06 E-value=0.44 Score=46.89 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++++|++|+||||++..++...
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999998887776544
No 277
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.06 E-value=0.09 Score=49.02 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 17 SVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
+-..++..-+..|+.++|.|++|+|||+++..++..... .+..+++..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fS 81 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFS 81 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 334445556778999999999999999887776655433 244455543
No 278
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.04 E-value=0.057 Score=49.97 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCC------EEEEEcCCCCChhccHhHHhhh
Q 014085 19 EKRLVEEVRKND------ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 19 Q~~~~~~~~~g~------~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+...+..+. .+.|.||+||||||++..+...
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344555666654 7899999999999988766544
No 279
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.03 E-value=0.024 Score=47.79 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+++.||+||||||++..+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988776644
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.02 E-value=0.02 Score=49.47 Aligned_cols=26 Identities=35% Similarity=0.287 Sum_probs=21.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+|+.+.|.||+||||||++..+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999988766554
No 281
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.01 E-value=0.034 Score=49.00 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
-+..|+.+++.||+|+|||+++..++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999888777764
No 282
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.95 E-value=0.052 Score=61.75 Aligned_cols=39 Identities=31% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCch
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~ 68 (431)
+|+++++.||+|+|||+++..++..... .+..+.++...
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAE 1464 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEcc
Confidence 6899999999999999887666655443 24456665544
No 283
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.84 E-value=0.018 Score=56.01 Aligned_cols=50 Identities=14% Similarity=0.064 Sum_probs=37.4
Q ss_pred hhhHHHhhccCC-hHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 3 RQKILQQRKSLP-IASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 3 ~~~~~~~~~~~~-~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++..+..+.+. .......+ ..+.+|+.+.|.||+||||||++..++...
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455556666665 34455666 778899999999999999999987776554
No 284
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.84 E-value=0.022 Score=50.50 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=34.0
Q ss_pred CCCChhHhHHHHhcccCCCCCcEEEEec--CCcCccchHHHHHHHHHHHH
Q 014085 99 DRTSTSTRIKEALLDPYLSRYSAIIVDE--AHERTVHTDVLLGLLKKVQN 146 (431)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lViDE--ah~~~~~~~~~~~~~~~~~~ 146 (431)
...+..++.+..++...+.+.+++++|| ++.+......+.++++++..
T Consensus 125 ~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 3456666666667777788888999999 55566666777777777643
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.83 E-value=0.019 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
|+.++++||+||||||++..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45789999999999998877754
No 286
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.83 E-value=0.021 Score=51.47 Aligned_cols=32 Identities=38% Similarity=0.444 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+...+. |+.+.|.||+||||||++..+.-.
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 33445677 999999999999999998777644
No 287
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.095 Score=50.72 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+-+++.||+|+|||+++..++...
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 45789999999999997776665554
No 288
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.082 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+-+++.||+|+|||+++..++...
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999997776666554
No 289
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.77 E-value=0.0054 Score=52.96 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=25.7
Q ss_pred CchhhHHHhhccCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 1 MPRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
|.++++.+..+.+.. +.... ..+.+|..++++|++|+|||+++..+.
T Consensus 1 m~~l~~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 1 MTNLNYQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp ----------CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred Ccchhhhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 445666677666642 22222 345678889999999999998885543
No 290
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.72 E-value=0.063 Score=56.42 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.9
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..++.++++||+|+|||+++..+....
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 457899999999999998887665443
No 291
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.72 E-value=0.025 Score=48.19 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
|+.+.++||+||||||++..+....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 5678999999999998887766543
No 292
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.71 E-value=0.022 Score=49.03 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=23.2
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..|..++++||+||||||++..+....
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34578899999999999999887776543
No 293
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.68 E-value=0.07 Score=44.64 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCC--CEEEEEcCCCCChhccHhHHhhh
Q 014085 16 ASVEKRLVEEVRKN--DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g--~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
....+++...+..+ ..+++.||+|+|||+++..+...
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34455566665543 68999999999999887666544
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.66 E-value=0.027 Score=46.86 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++.++++||+||||||++..+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999887766543
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.63 E-value=0.027 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+|+.++++||+||||||++..+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5778999999999999888776544
No 296
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.61 E-value=0.027 Score=54.15 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=30.6
Q ss_pred hccCChHHHHHHHHHHHhCCCE--EEEEcCCCCChhccHhHHhhh
Q 014085 10 RKSLPIASVEKRLVEEVRKNDI--LIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~~~g~~--~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.|+..+ .+.+...+.+|.. +.|+||+|+||||++..+.-.
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34454445 6678888999999 999999999999998776543
No 297
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.56 E-value=0.038 Score=51.97 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=21.9
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..|+.++|.||+|+|||+++..++...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357789999999999998887776554
No 298
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.51 E-value=0.17 Score=53.64 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=24.5
Q ss_pred HHHHHHHHHhC--CCEEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~--g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+++..+.. ..+++++||+|+|||+++..+...
T Consensus 178 ~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 178 EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 33445555444 347999999999999887666654
No 299
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.45 E-value=0.062 Score=52.33 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+.+++.||+|+|||+++..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999998876666543
No 300
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.42 E-value=0.52 Score=45.53 Aligned_cols=91 Identities=24% Similarity=0.261 Sum_probs=44.3
Q ss_pred CEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC--chhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhHhH
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ--PRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTSTRI 107 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (431)
..++++|++|+||||++..++...... .+.+++++. |.+..+.++...+....+..+.. ... .......+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~------~~~-~~dp~~i~ 172 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP------SDV-GQKPVDIV 172 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC------CCS-SSCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe------CCC-CCCHHHHH
Confidence 367888999999998776666444322 134444432 43433333333333333322100 000 11222222
Q ss_pred HHHhcccCCCCCcEEEEecCC
Q 014085 108 KEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 108 ~~~~~~~~~~~~~~lViDEah 128 (431)
...+......+++++|+|=+-
T Consensus 173 ~~~l~~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 173 NAALKEAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHhCCCCEEEEECCC
Confidence 323322122568999999864
No 301
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.31 E-value=0.061 Score=45.96 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+++.||+|+|||+++..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999998876655443
No 302
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.30 E-value=0.13 Score=49.25 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+-+++.||+|+|||.++..++...
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 4679999999999997776665554
No 303
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.052 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+-+++.||+|+|||+++..++...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999997776666554
No 304
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.09 E-value=0.062 Score=51.60 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCC--------------------EEEEEcCCCCChhccHhHHhh
Q 014085 17 SVEKRLVEEVRKND--------------------ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 17 ~~Q~~~~~~~~~g~--------------------~~vi~apTGsGKT~~~~~~~~ 51 (431)
...+.+...+.+|+ .+.+.||+||||||++..+.-
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34556777777888 999999999999999877764
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.04 E-value=0.036 Score=46.96 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.++|+||+|+|||+++..++...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999887776553
No 306
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.01 E-value=0.17 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+-+++.||+|+|||+++..+....
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~el 262 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999998887666554
No 307
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.93 E-value=0.078 Score=44.19 Aligned_cols=36 Identities=19% Similarity=0.415 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhC--CCEEEEEcCCCCChhccHhHHhhh
Q 014085 17 SVEKRLVEEVRK--NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 17 ~~Q~~~~~~~~~--g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...+++...+.. ..++++.||+|+|||+++..+...
T Consensus 29 ~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 29 TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 334455555544 568999999999999887666544
No 308
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.93 E-value=0.021 Score=57.05 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHHHH-HHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 16 ASVEKRLVE-EVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 16 ~~~Q~~~~~-~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
.+...++.. .+.+|+.++|+||+||||||++..++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 455677777 78899999999999999998887753
No 309
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.89 E-value=0.049 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++.++|+||+||||||++..+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999998777644
No 310
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.048 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+-+++.||+|+|||+++..++...
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh
Confidence 4679999999999997776666554
No 311
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.81 E-value=0.043 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++.++|+||||||||++...+....
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34578999999999998876665443
No 312
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.62 E-value=0.37 Score=52.66 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC-ccccccccCC
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-IAETSVTIPG 331 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~-~~~~Gvdip~ 331 (431)
.+.+++|.|||+.-+...++.+.+.+... ++.+..+++..+..++..+.+.+++|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-----~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANW-----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTT-----TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcC-----CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 35689999999999999999988765422 56788899999999999999999999999999996 4555678888
Q ss_pred cEEEE
Q 014085 332 IKYVI 336 (431)
Q Consensus 332 v~~VI 336 (431)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 88887
No 313
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.59 E-value=0.093 Score=46.19 Aligned_cols=28 Identities=29% Similarity=0.658 Sum_probs=22.4
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..|+.+++.||+|+|||+++..++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998866665443
No 314
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.57 E-value=0.059 Score=44.91 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..++++|++||||||+...+....
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35679999999999998887766554
No 315
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.52 E-value=0.057 Score=45.27 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
..+|+||||||||+++..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999988866654
No 316
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.51 E-value=0.055 Score=47.79 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=22.2
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..|..+++.|++|+|||+++..++.+.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467899999999999997776666543
No 317
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.46 E-value=0.069 Score=50.65 Aligned_cols=33 Identities=30% Similarity=0.326 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+...+..|+.+++.||+||||||++..+...
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 334445668899999999999999888766643
No 318
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.45 E-value=0.061 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.++++||+||||||+...+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999998887766543
No 319
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.44 E-value=0.056 Score=46.09 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.|+-++|+||||+|||+++..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999777665543
No 320
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.39 E-value=0.045 Score=46.06 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.|..++++|++||||||++..+....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999887776543
No 321
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.38 E-value=0.15 Score=51.82 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=33.9
Q ss_pred cCChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 12 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 12 ~~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+....+.+.+...+..|+.+++.||+|+|||+++..+....
T Consensus 43 i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 43 VIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred EECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 344556677888889999999999999999998887776543
No 322
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.35 E-value=0.24 Score=51.78 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=23.1
Q ss_pred HHHHHHHh--CCCEEEEEcCCCCChhccHhHHhh
Q 014085 20 KRLVEEVR--KNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 20 ~~~~~~~~--~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+++...+. .+.+++++||+|+|||+++..+..
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHH
Confidence 34444443 467899999999999988766554
No 323
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.35 E-value=0.1 Score=48.08 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++++++.||+|+|||+++..+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999997776655443
No 324
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.29 E-value=0.066 Score=45.08 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++..+++.|++||||||++..+....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999887766543
No 325
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.29 E-value=0.057 Score=49.57 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..++|+||||||||+++..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 456789999999999887666544
No 326
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.17 E-value=0.11 Score=48.38 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCE--EEEEcCCCCChhccHhHHhhh
Q 014085 16 ASVEKRLVEEVRKNDI--LIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~--~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.+.+...+..|+. +++.||+|+|||+++..+...
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3455566667778876 999999999999887665543
No 327
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.14 E-value=0.079 Score=46.46 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=21.4
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+|+.+.+.|++||||||++..+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 46788999999999999988666544
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.12 E-value=0.069 Score=47.62 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.5
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..|..+.|.||+||||||++..+....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999987776543
No 329
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.12 E-value=0.097 Score=48.09 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=24.5
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
-+..+..|+.+.+.||+|+||||++..+.
T Consensus 158 ~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 158 ELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 34556689999999999999999997776
No 330
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.07 E-value=0.056 Score=48.27 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++|+|||||||||++..+....
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999998887665543
No 331
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.01 E-value=0.063 Score=44.35 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChhccHhHH
Q 014085 31 ILIIVGETGSGKTTQLPQF 49 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~ 49 (431)
.++++||+||||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999988777
No 332
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.00 E-value=0.052 Score=46.65 Aligned_cols=29 Identities=38% Similarity=0.299 Sum_probs=22.9
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+..+..+.|+|++||||||++..+...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34556778999999999999888776544
No 333
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.95 E-value=0.072 Score=44.00 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++++|+.||||||++..+....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999887766553
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.94 E-value=0.079 Score=44.61 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.5
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+..++++|++||||||+...+...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35788999999999999888766554
No 335
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.92 E-value=0.52 Score=39.97 Aligned_cols=39 Identities=33% Similarity=0.314 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRR 69 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~ 69 (431)
...+++..++|.|||+++........- .|.+++++....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeC
Confidence 347888999999999776555544432 356777775433
No 336
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.91 E-value=0.082 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.++|+|++||||||++..++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 36789999999999998877754
No 337
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.84 E-value=0.089 Score=45.37 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+..|..+++.|++||||||++..+...
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 55678899999999999999888766544
No 338
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.77 E-value=0.078 Score=43.09 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCChhccHhHHh
Q 014085 30 DILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~ 50 (431)
...+|.||||||||+++..+.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999998876554
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.70 E-value=0.077 Score=45.06 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=23.2
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..+..++++|++||||||++..+....
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567889999999999999887766544
No 340
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=91.69 E-value=0.18 Score=48.32 Aligned_cols=79 Identities=8% Similarity=0.061 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCccc----ccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIAE----TSV 327 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~~----~Gv 327 (431)
..++++||.+||+.-+...++.+.+... .++.+..+||+.+.+++....+.+.+|..+|+|+|+-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 3467899999999999999999988532 378899999999998888888888888899999998322 114
Q ss_pred ccCCcEEEE
Q 014085 328 TIPGIKYVI 336 (431)
Q Consensus 328 dip~v~~VI 336 (431)
+...+++||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 556777777
No 341
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.65 E-value=0.2 Score=47.31 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=22.3
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..|+.++|.||+|+|||+++..++...
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 3467889999999999998876666554
No 342
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.65 E-value=0.075 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+|..++++|+.||||||++..+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999887666543
No 343
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.61 E-value=0.19 Score=44.88 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=22.6
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.....+.++++.||+|+|||+++..+....
T Consensus 24 ~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 24 HLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp HHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred HHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 334567899999999999997776665443
No 344
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.52 E-value=0.064 Score=54.24 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=33.1
Q ss_pred hHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 5 KILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 5 ~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
++.+..+.++. .++.+.+...+.+|+.+.++||+||||||++..+...
T Consensus 343 ~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 343 EFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 33444444542 2344445556678999999999999999998777644
No 345
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.52 E-value=0.035 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+++.||+|+|||+++..+....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999998887666543
No 346
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.52 E-value=0.082 Score=45.11 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.|..+++.|+.||||||++..+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999987776543
No 347
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.44 E-value=0.08 Score=44.29 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=21.7
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+..++++|++||||||++..+....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999998887665443
No 348
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.38 E-value=0.1 Score=44.12 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=23.0
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..+..+++.|+.||||||++..+....
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999887776543
No 349
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.37 E-value=0.068 Score=54.17 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+.+...+.+|+.+.++||+||||||++..+....
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 334455566789999999999999999987776443
No 350
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.36 E-value=0.18 Score=51.72 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=51.8
Q ss_pred hccCChHHHHHHHHHHH----hCCC-EEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhC
Q 014085 10 RKSLPIASVEKRLVEEV----RKND-ILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESG 84 (431)
Q Consensus 10 ~~~~~~~~~Q~~~~~~~----~~g~-~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~ 84 (431)
.-.++++..|.+++..+ ..|. ...+.|-||||||+++..++... ++.++++.|....+.+.+..+..+++
T Consensus 8 ~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 8 VSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred ecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 44567788887666644 4454 57789999999997776555443 23578888999999999999888865
No 351
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.35 E-value=0.25 Score=45.35 Aligned_cols=40 Identities=13% Similarity=-0.021 Sum_probs=26.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQP 67 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p 67 (431)
-.| .+.|.||+|+|||+++..++........+..++++..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 346 7899999999999887776655443211334555543
No 352
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.30 E-value=0.081 Score=45.31 Aligned_cols=24 Identities=38% Similarity=0.231 Sum_probs=19.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
.+..+.|.||+||||||++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999988866654
No 353
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.24 E-value=0.081 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.++||+||||||++..+.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999987766543
No 354
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.18 E-value=0.058 Score=54.48 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+.+...+.+|+.+.++||+||||||++..+...
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34445556678999999999999999988766543
No 355
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.17 E-value=0.098 Score=45.51 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..+.|.||+||||||++..+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887776543
No 356
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.16 E-value=0.13 Score=47.28 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=24.2
Q ss_pred HHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 23 VEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 23 ~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+..|+.+.+.||+|+||||++..+.-.
T Consensus 163 lf~~l~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 163 LKEYLKGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHhcCCeEEEECCCCCcHHHHHHHhccc
Confidence 445668999999999999999988666543
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.12 E-value=0.05 Score=45.43 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+.|+|++||||||++..++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998887776543
No 358
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=91.12 E-value=0.17 Score=49.93 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 13 LPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 13 ~~~~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++-....+.+...+..|.++++.||+|+|||+++..+....
T Consensus 25 vGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 34556667778888899999999999999997776665443
No 359
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.07 E-value=0.086 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.3
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..++|+||||||||+++..+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999887666544
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.01 E-value=0.16 Score=44.98 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=22.4
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
...+..+++.||.||||||++..+....
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456689999999999999987776544
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.96 E-value=0.094 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..++++||+||||||++..+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999988776554
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.96 E-value=0.093 Score=44.27 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..++++|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999887765543
No 363
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.95 E-value=0.1 Score=43.46 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
.++++|++||||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999998877655
No 364
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.94 E-value=0.11 Score=49.67 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhH
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRV 70 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~ 70 (431)
.+.+++|+||||||||+++..++..... .+..++++-|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcC
Confidence 5678999999999999888776655432 2445667766543
No 365
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.81 E-value=0.043 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+++.||+|+|||+++..+....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 348999999999998887666543
No 366
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.81 E-value=0.16 Score=47.68 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.8
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
...|+.++++||+|+||||++..++-.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhcc
Confidence 458999999999999999998766543
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.78 E-value=0.1 Score=45.39 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=23.6
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
.+.+.+.+++.||+||||+|++..+.....
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 344567888999999999999888776653
No 368
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.71 E-value=0.11 Score=43.77 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.|..++++|++||||||++..+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999998887765543
No 369
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.52 E-value=0.068 Score=50.05 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=23.1
Q ss_pred HHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 23 VEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 23 ~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.....++..++++|++|+||||++..+...
T Consensus 50 ~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 50 MPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 333456778999999999999888776544
No 370
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.52 E-value=0.12 Score=47.99 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 16 ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 16 ~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
....+.+...+..+.++++.||+|+|||+++..+....
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34455666667778999999999999998776665443
No 371
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.49 E-value=0.1 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=17.9
Q ss_pred CCCEEEEEcCCCCChhccHhHHh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
.| ..+|+||||||||+++..+.
T Consensus 23 ~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SE-EEEEECCTTSSHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHH
Confidence 44 67899999999998886654
No 372
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.47 E-value=0.11 Score=44.47 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
...++++|++||||||++..+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999887765543
No 373
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.46 E-value=0.26 Score=43.14 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.0
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
..|..+++.||.||||||++..+.....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999877765543
No 374
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.45 E-value=0.29 Score=55.90 Aligned_cols=95 Identities=24% Similarity=0.225 Sum_probs=52.0
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChh
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTS 104 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (431)
-+.+|+++++.||+|+|||+++..++...... +..++++.... +..+.. ....+.......-. +.+ .....
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~--Ge~~~Fit~ee-~~~~L~---a~~~G~dl~~l~~~--~pd-~~e~~ 1147 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEH-ALDPIY---ARKLGVDIDNLLCS--QPD-TGEQA 1147 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTS-CCCHHH---HHHTTCCTTTCEEE--CCS-SHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEccc-cHHHHH---HHHcCCChhHheee--cCc-chHHH
Confidence 45688999999999999998887777665433 45566665322 222222 23344443332211 111 01111
Q ss_pred HhHHHHhcccCCCCCcEEEEecCCcC
Q 014085 105 TRIKEALLDPYLSRYSAIIVDEAHER 130 (431)
Q Consensus 105 ~~~~~~~~~~~~~~~~~lViDEah~~ 130 (431)
..+...+.. ...++++|+||.-..
T Consensus 1148 ~~i~~~l~~--~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1148 LEICDALAR--SGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp HHHHHHHHH--HTCCSEEEESCGGGC
T ss_pred HHHHHHHHH--hCCCCEEEECCcccc
Confidence 112222222 456999999997544
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.39 E-value=0.14 Score=44.68 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..+++.|++||||||++..+....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999887776543
No 376
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.29 E-value=0.17 Score=46.86 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.2
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..|+.++|.||+|+|||+++..++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 467899999999999998877776654
No 377
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.28 E-value=0.089 Score=49.76 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=24.0
Q ss_pred HHHhC--CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 24 EEVRK--NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 24 ~~~~~--g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+.+ ++.+.|+||+||||||++..+....
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34556 8899999999999999987766543
No 378
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.24 E-value=0.12 Score=44.22 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
++..+++.|+.||||||++..+.....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999877766543
No 379
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.23 E-value=0.15 Score=44.26 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..+++.|+.||||||++..+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999887776544
No 380
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.19 E-value=0.15 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+++.||+|+|||+++..+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 57999999999999877666544
No 381
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.18 E-value=0.19 Score=45.85 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.++++.||+|+|||+++..+....
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999998876665543
No 382
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.18 E-value=0.12 Score=43.55 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..+++.|++||||||++..+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887665443
No 383
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.18 E-value=0.23 Score=46.83 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..+++.||+|+|||+++..+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 55789999999999998776665544
No 384
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.09 E-value=0.67 Score=40.62 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC-----ccc-ccc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAE-TSV 327 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~-----~~~-~Gv 327 (431)
+..+||.+||++-+..+++.+.+..... ++.+..++|+.+..++...+.. ..+|+|+|+ .+. ..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~ 172 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRAC-----RLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKT 172 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhc-----CceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCC
Confidence 5679999999999999988887765432 6778889999988876655432 468999996 222 235
Q ss_pred ccCCcEEEE
Q 014085 328 TIPGIKYVI 336 (431)
Q Consensus 328 dip~v~~VI 336 (431)
++.++++||
T Consensus 173 ~~~~~~~lV 181 (242)
T 3fe2_A 173 NLRRTTYLV 181 (242)
T ss_dssp CCTTCCEEE
T ss_pred CcccccEEE
Confidence 677888887
No 385
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=90.06 E-value=0.2 Score=49.45 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhccc--ccCCcEEEEeCchh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAGF--CRDGKLIGVTQPRR 69 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~~--~~~~~~v~v~~p~~ 69 (431)
++.+++|.|+||||||+++..++..... ..+.-.++++-|..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 4567999999999999887776643222 12233555555543
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.04 E-value=0.13 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=19.0
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..++|+||||||||++...+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 368999999999998876665543
No 387
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=89.95 E-value=0.14 Score=43.74 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
.++|+|++||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999988877655
No 388
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.88 E-value=0.13 Score=47.75 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..++|+||||||||+++..+....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 368899999999998876665543
No 389
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.85 E-value=0.15 Score=43.64 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=21.7
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..|..++++|+.||||||++..+...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35788999999999999988777654
No 390
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.77 E-value=0.16 Score=49.18 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHH
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAA 72 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~ 72 (431)
..++++.|+||||||+++..++..... .+..++++-|..+..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchh
Confidence 457999999999999776555443321 245688888877664
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.74 E-value=0.25 Score=41.20 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..++++|++|||||+++..++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999888777654
No 392
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.66 E-value=0.16 Score=43.61 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.9
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+..++++|+.||||||++..+...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999988777654
No 393
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.62 E-value=2.9 Score=35.65 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=55.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc-----c-cccc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----A-ETSV 327 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~-----~-~~Gv 327 (431)
..++||.||+++-+...++.+.+.... .++..+..++|+.+..++...+ .++..+|+|+|.- + ...+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~ 154 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY----MPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSL 154 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT----STTCCEEEESCCSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSS
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh----CCCceEEEEeCCCChHHHHHHH---hcCCCCEEEeCHHHHHHHHHhCCC
Confidence 348999999999999999888776322 2367788899999877665443 3456789999962 1 2345
Q ss_pred ccCCcEEEE
Q 014085 328 TIPGIKYVI 336 (431)
Q Consensus 328 dip~v~~VI 336 (431)
++.++++||
T Consensus 155 ~~~~~~~lV 163 (220)
T 1t6n_A 155 NLKHIKHFI 163 (220)
T ss_dssp CCTTCCEEE
T ss_pred CcccCCEEE
Confidence 677788877
No 394
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.61 E-value=1.3 Score=38.44 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=55.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcc------cc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA------ET 325 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~------~~ 325 (431)
....++||.+||++-+...++.+.+.... ..++.+..++|+.+..++...++ ..+|+|+|.-. ..
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIK----MEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTT----STTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcc----cCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcC
Confidence 34568999999999999999988876321 23677888999998877665543 47899999831 23
Q ss_pred ccccCCcEEEE
Q 014085 326 SVTIPGIKYVI 336 (431)
Q Consensus 326 Gvdip~v~~VI 336 (431)
.+++..+++||
T Consensus 161 ~~~~~~~~~lV 171 (230)
T 2oxc_A 161 YLNPGSIRLFI 171 (230)
T ss_dssp SSCGGGCCEEE
T ss_pred CcccccCCEEE
Confidence 45666777777
No 395
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.60 E-value=0.34 Score=44.63 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
.++.--+..|+.++|.|++|+|||+++..++...... +..+++..
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~s 103 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 103 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEE
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 3444456678999999999999998877666554322 34455544
No 396
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.56 E-value=0.15 Score=43.67 Aligned_cols=21 Identities=43% Similarity=0.453 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
.+.+.||+||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999988877654
No 397
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.55 E-value=0.22 Score=46.59 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..|+.++|.||+|+|||+++..++...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999998877776653
No 398
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.48 E-value=0.16 Score=43.83 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.||.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887775544
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.47 E-value=0.16 Score=43.72 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhccHhHHhhhcc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
.+++.||+||||+|++..+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478899999999999988876653
No 400
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.47 E-value=0.17 Score=43.69 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++++||.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987775544
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.44 E-value=0.16 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+++.||+|+|||+++..+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4579999999999998887665543
No 402
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.43 E-value=0.15 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=18.9
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.|+||+||||||++..+...
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999887665543
No 403
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.40 E-value=0.19 Score=42.79 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..++++|+.||||||++..+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999887776543
No 404
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.38 E-value=0.42 Score=48.29 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=53.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcC--CCCCcEEEEecC
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPA--AAGFRKVILATN 321 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f--~~g~~~vLvaT~ 321 (431)
.+.+||.+|+++-+....+.|.+. ++.+..++|+++..++..+...+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~---------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL---------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH---------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc---------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 568999999999999999999887 88899999999999998887776 578899999998
No 405
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.33 E-value=0.21 Score=54.25 Aligned_cols=78 Identities=9% Similarity=0.112 Sum_probs=62.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc-----cccc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----AETS 326 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~-----~~~G 326 (431)
..+.++||.+||+.-|..+++.+.+.. ..++.+..+||+++..+|....+.+.+|..+|+|+|+- +..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~------~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~- 191 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLA------DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK- 191 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTS------CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhh------CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-
Confidence 346789999999999999999887731 23778999999999988888888888899999999972 222
Q ss_pred cccCCcEEEE
Q 014085 327 VTIPGIKYVI 336 (431)
Q Consensus 327 vdip~v~~VI 336 (431)
++..++.+||
T Consensus 192 l~~~~l~~lV 201 (1104)
T 4ddu_A 192 LSQKRFDFVF 201 (1104)
T ss_dssp HHTSCCSEEE
T ss_pred hcccCcCEEE
Confidence 5566788887
No 406
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.32 E-value=0.16 Score=42.67 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.|+.||||||++..+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999887766543
No 407
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.31 E-value=0.17 Score=42.23 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=16.7
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++..+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999887765443
No 408
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.29 E-value=0.18 Score=42.91 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999987776554
No 409
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.19 E-value=0.17 Score=43.38 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=17.4
Q ss_pred CEEEEEcCCCCChhccHhHHh
Q 014085 30 DILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~ 50 (431)
...+|+||||||||+++..+.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 467899999999998876554
No 410
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.17 E-value=0.15 Score=42.36 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.||+||||||++..+....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999998887766544
No 411
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.13 E-value=0.15 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+-+++.||+|+|||+++..+....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 349999999999998887665543
No 412
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.13 E-value=0.33 Score=44.49 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=22.0
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.....+.++++.||+|+|||+++..+...
T Consensus 20 ~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 20 MVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp HHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred HHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 33346778999999999999777665543
No 413
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.04 E-value=0.28 Score=40.66 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.++|++||||||++..++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999888776654
No 414
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.84 E-value=0.13 Score=53.02 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=21.8
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhH
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQ 48 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~ 48 (431)
+...+.+|+.+.|+||+||||||++..
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~ 367 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNE 367 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTT
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHH
Confidence 334455789999999999999988744
No 415
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=88.79 E-value=1.1 Score=39.18 Aligned_cols=76 Identities=9% Similarity=0.073 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC-----cccc-c
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAET-S 326 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~-----~~~~-G 326 (431)
...++||.+||++-+..+++.+.+.... .+..+..++|+...... .+.+..+..+|+|+|. .+.. .
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~ 168 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDY-----MGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRY 168 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTT-----TTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTS
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhh-----cCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCC
Confidence 4568999999999999999998876432 15667777887664432 3344566789999994 3333 3
Q ss_pred cccCCcEEEE
Q 014085 327 VTIPGIKYVI 336 (431)
Q Consensus 327 vdip~v~~VI 336 (431)
++...+++||
T Consensus 169 ~~~~~~~~lV 178 (237)
T 3bor_A 169 LSPKWIKMFV 178 (237)
T ss_dssp SCSTTCCEEE
T ss_pred cCcccCcEEE
Confidence 5667788877
No 416
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.72 E-value=0.16 Score=44.02 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..+++.||.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999887776554
No 417
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.69 E-value=1.8 Score=38.12 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=54.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc-----cc--c
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----AE--T 325 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~-----~~--~ 325 (431)
...++||.+||++-+..+++.+.+..... ++.+..++|+.+..++...+ .+..+|+|+|.- +. .
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~ 180 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSI-----GVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTK 180 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGG-----TCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHST
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccC-----CeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCC
Confidence 34579999999999999998888764422 56788889998876654433 235789999962 22 3
Q ss_pred ccccCCcEEEE
Q 014085 326 SVTIPGIKYVI 336 (431)
Q Consensus 326 Gvdip~v~~VI 336 (431)
++++..+++||
T Consensus 181 ~~~l~~~~~lV 191 (249)
T 3ber_A 181 GFNLRALKYLV 191 (249)
T ss_dssp TCCCTTCCEEE
T ss_pred CcCccccCEEE
Confidence 56777888887
No 418
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.61 E-value=0.22 Score=40.97 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+++++.|+.||||||+...+....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999998887765543
No 419
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.58 E-value=0.22 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+++.||+|+|||+++..+....
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999998877766554
No 420
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.52 E-value=0.18 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=17.8
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..++|+||||||||+++..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 35789999999999887555544
No 421
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.48 E-value=0.062 Score=49.40 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHh
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
..+.+|+.+++.||+|+||||++..+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 455689999999999999999886654
No 422
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.42 E-value=0.15 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..++++|++||||||++..+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999998887765543
No 423
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.40 E-value=2.4 Score=35.68 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC-----cccc-c
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAET-S 326 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~-----~~~~-G 326 (431)
...++||.+|++.-++..++.+.+.... .++..+..++|+.+..+....+ .+..+|+|+|. .+.. .
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~ 141 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKH----MGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGV 141 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTT----SSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhh----cCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCC
Confidence 3557999999999999999888776432 2366788889998876654433 24578999997 2222 3
Q ss_pred cccCCcEEEE
Q 014085 327 VTIPGIKYVI 336 (431)
Q Consensus 327 vdip~v~~VI 336 (431)
+++..+++||
T Consensus 142 ~~~~~~~~lV 151 (206)
T 1vec_A 142 AKVDHVQMIV 151 (206)
T ss_dssp SCCTTCCEEE
T ss_pred cCcccCCEEE
Confidence 4566777777
No 424
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.14 E-value=0.19 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=21.3
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+ +.+.|+||+||||||++..+.-.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 456 88999999999999988776643
No 425
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.13 E-value=0.52 Score=44.12 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+..+.++|++|+||||++..+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 557899999999999998877654
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.07 E-value=0.26 Score=43.16 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.++++.|+.||||||++..+....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999887776554
No 427
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.07 E-value=0.23 Score=42.26 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
...++++|+.||||||++..+....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999998887766543
No 428
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.02 E-value=0.35 Score=46.93 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
+.--+..|+.++|.|++|+|||+++..++...... +..+++..
T Consensus 190 ~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fS 232 (444)
T 3bgw_A 190 MTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHS 232 (444)
T ss_dssp HHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred hcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEE
Confidence 33345678899999999999998877776655433 44566654
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.02 E-value=0.24 Score=42.83 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+..+++.|+.||||||++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999887776554
No 430
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=87.90 E-value=0.22 Score=44.56 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+..++++|++||||||++..+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999888776544
No 431
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=87.88 E-value=1.4 Score=37.92 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=47.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcc------cc
Q 014085 252 EAPGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA------ET 325 (431)
Q Consensus 252 ~~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~------~~ 325 (431)
....++||.+|++.-+..+++.+.+.... .+..+..++|+.+..++...+. ..+|+|+|.-. ..
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp~~l~~~~~~~ 149 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFH-----MDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRR 149 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTT-----SCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcc-----cCceEEEEeCCcchHHHHhcCC-----CCCEEEECHHHHHHHHHhC
Confidence 34568999999999999999988876432 2567888899887665543332 27899999722 23
Q ss_pred ccccCCcEEEE
Q 014085 326 SVTIPGIKYVI 336 (431)
Q Consensus 326 Gvdip~v~~VI 336 (431)
.+++..+++||
T Consensus 150 ~~~~~~~~~iV 160 (224)
T 1qde_A 150 RFRTDKIKMFI 160 (224)
T ss_dssp SSCCTTCCEEE
T ss_pred CcchhhCcEEE
Confidence 45667777777
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.88 E-value=0.21 Score=41.22 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+++.|+.||||||++..+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999998887766543
No 433
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.68 E-value=0.55 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+-+++.||+|+|||.++..+....
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~ 535 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh
Confidence 458999999999997766665554
No 434
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=87.63 E-value=0.22 Score=46.44 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=17.3
Q ss_pred CEEEEEcCCCCChhccHhHHh
Q 014085 30 DILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~ 50 (431)
...+|+||||||||+++..+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999998886543
No 435
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.59 E-value=0.24 Score=45.90 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.1
Q ss_pred CCCEEEEEcCCCCChhccHhHHhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
.| ..+|+||||||||+++..+..
T Consensus 24 ~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SS-EEEEECCTTTCSTHHHHHHHH
T ss_pred CC-cEEEECCCCCcHHHHHHHHHH
Confidence 45 889999999999988876654
No 436
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.55 E-value=0.24 Score=41.73 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++++|++|+|||+++..+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999998776644
No 437
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.54 E-value=0.12 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.|+.||||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999987766543
No 438
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.53 E-value=0.24 Score=41.57 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..++++|+.||||||++..+....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999998887765543
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.46 E-value=0.25 Score=43.22 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=19.3
Q ss_pred HHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 24 EEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 24 ~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+..|..+++.|+.||||||++..+...
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999888776544
No 440
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=87.41 E-value=0.22 Score=47.07 Aligned_cols=22 Identities=41% Similarity=0.803 Sum_probs=17.9
Q ss_pred CEEEEEcCCCCChhccHhHHhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~ 51 (431)
...+|+||||||||+++..+.+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999988766653
No 441
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.40 E-value=0.25 Score=41.83 Aligned_cols=22 Identities=27% Similarity=0.681 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++++|++|+|||+++..+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999988776644
No 442
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.40 E-value=0.26 Score=41.58 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+++.|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999988776654
No 443
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.34 E-value=0.64 Score=40.11 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.|..+++.|+.||||||++..+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999888766543
No 444
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.27 E-value=0.27 Score=40.32 Aligned_cols=23 Identities=22% Similarity=0.145 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999998887766543
No 445
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.24 E-value=0.26 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887776544
No 446
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.19 E-value=3.6 Score=35.57 Aligned_cols=74 Identities=7% Similarity=0.047 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCc-----ccc--
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNI-----AET-- 325 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~-----~~~-- 325 (431)
++.++||.+||+.-+...++.+.+.... .++.+..++|+.+..+....+ +..+|+|+|.- +..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~ 165 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKN-----HDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETV 165 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-----SSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCC-----CCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcC
Confidence 3567999999999999999998876322 246788899998776554444 35789999962 222
Q ss_pred ccccCCcEEEE
Q 014085 326 SVTIPGIKYVI 336 (431)
Q Consensus 326 Gvdip~v~~VI 336 (431)
.++..++++||
T Consensus 166 ~~~~~~~~~lV 176 (236)
T 2pl3_A 166 SFHATDLQMLV 176 (236)
T ss_dssp SCCCTTCCEEE
T ss_pred CcccccccEEE
Confidence 35667787777
No 447
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.18 E-value=0.23 Score=41.55 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..++++|++||||||+...+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999998887765543
No 448
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.18 E-value=0.24 Score=42.81 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCChhccHhHHhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+..++|.|+.||||||++..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999988876644
No 449
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.10 E-value=0.27 Score=42.69 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+++.|+.||||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776543
No 450
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.06 E-value=0.29 Score=47.36 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=21.2
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..++..+|+||+|||||+++..+...
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35789999999999999887666543
No 451
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.00 E-value=0.29 Score=41.13 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+++.|+.||||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999888776553
No 452
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=86.91 E-value=0.29 Score=46.25 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 22 LVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 22 ~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+...+.+|+.+.|.||+|+|||+++..+...
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4444558999999999999999888665543
No 453
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=86.84 E-value=0.99 Score=38.18 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC-----ccc-cc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN-----IAE-TS 326 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~-----~~~-~G 326 (431)
...++||.+|++.-+...++.+.+... .+.+..++|+....+....+. ...+|+|+|. .+. ..
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 139 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP-------HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGV 139 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT-------TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh-------cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCC
Confidence 356799999999999999999888733 356778898887655443332 2467999996 222 24
Q ss_pred cccCCcEEEE
Q 014085 327 VTIPGIKYVI 336 (431)
Q Consensus 327 vdip~v~~VI 336 (431)
+++.++++||
T Consensus 140 ~~~~~~~~iV 149 (207)
T 2gxq_A 140 LDLSRVEVAV 149 (207)
T ss_dssp SCCTTCSEEE
T ss_pred cchhhceEEE
Confidence 5667777777
No 454
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.83 E-value=0.29 Score=41.51 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCChhccHhHHhhh
Q 014085 30 DILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.|.|++||||||++..+...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46889999999999888776554
No 455
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.79 E-value=0.94 Score=39.14 Aligned_cols=74 Identities=20% Similarity=0.230 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC------ccccc
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN------IAETS 326 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~------~~~~G 326 (431)
.+.++||.+||++-+..+++.+.+.. ..+..+..++|+.+..++...+. ...+|+|+|+ .....
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~Tp~~l~~~~~~~~ 162 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS------YKGLKSICIYGGRNRNGQIEDIS----KGVDIIIATPGRLNDLQMNNS 162 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC------CTTCCEEEECC------CHHHHH----SCCSEEEECHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc------ccCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCC
Confidence 45679999999999999999888762 23677888898887665443331 2378999996 12234
Q ss_pred cccCCcEEEE
Q 014085 327 VTIPGIKYVI 336 (431)
Q Consensus 327 vdip~v~~VI 336 (431)
+++.++++||
T Consensus 163 ~~~~~~~~lV 172 (228)
T 3iuy_A 163 VNLRSITYLV 172 (228)
T ss_dssp CCCTTCCEEE
T ss_pred cCcccceEEE
Confidence 5677888887
No 456
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.74 E-value=0.29 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCChhccHhHHhhhc
Q 014085 30 DILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..+++.||+|+|||+++..+....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998877666554
No 457
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.57 E-value=0.4 Score=44.28 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.2
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..|+.++|.||+|+|||+++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999887776654
No 458
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=86.54 E-value=0.3 Score=48.78 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.|..+++.||+|+|||+++..+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999998887665544
No 459
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.50 E-value=0.19 Score=50.11 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.1
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.+|+.++++|++||||||++..+....
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhh
Confidence 4578999999999999998887765543
No 460
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.40 E-value=0.34 Score=42.48 Aligned_cols=29 Identities=24% Similarity=0.150 Sum_probs=22.2
Q ss_pred HHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 25 EVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 25 ~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
....+..+.|.|++||||||++..+....
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45677889999999999998887665543
No 461
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=86.34 E-value=1.8 Score=38.03 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=52.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecCcc------cccc
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATNIA------ETSV 327 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~~~------~~Gv 327 (431)
..++||.+||++-+..+++.+.+.... .++.+..++|+.+..+....+. ...+|+|+|.-. ...+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~ 170 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLN-----TPLRSCVVYGGADTHSQIREVQ----MGCHLLVATPGRLVDFIEKNKI 170 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTT-----SSCCEEEECSSSCSHHHHHHHS----SCCSEEEECHHHHHHHHHTTSB
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcc-----CCceEEEEECCCCHHHHHHHhC----CCCCEEEECHHHHHHHHHcCCC
Confidence 357999999999999999988876432 2566778899887765544432 357899999721 2235
Q ss_pred ccCCcEEEE
Q 014085 328 TIPGIKYVI 336 (431)
Q Consensus 328 dip~v~~VI 336 (431)
++..+++||
T Consensus 171 ~~~~~~~lV 179 (253)
T 1wrb_A 171 SLEFCKYIV 179 (253)
T ss_dssp CCTTCCEEE
T ss_pred ChhhCCEEE
Confidence 677777777
No 462
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=86.34 E-value=0.32 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCChhccHhHHhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
+|+.++|.||+||||||++..+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 678999999999999988876654
No 463
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.04 E-value=0.11 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=19.0
Q ss_pred hCCCEEEEEcCCCCChhccHhHHh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
.+| .++++||||||||+++..+.
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHH
Confidence 356 88999999999998886654
No 464
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.02 E-value=0.34 Score=45.46 Aligned_cols=28 Identities=36% Similarity=0.343 Sum_probs=22.5
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+..|+.++|.||+|+|||+++..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3367899999999999998876666554
No 465
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=85.98 E-value=0.29 Score=46.05 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=20.8
Q ss_pred CCCCCHHHHhhhhCcCCCCCcEEEEecC
Q 014085 294 FSSLPSEQQMRVFAPAAAGFRKVILATN 321 (431)
Q Consensus 294 hg~~~~~~r~~i~~~f~~g~~~vLvaT~ 321 (431)
.++++...|..+++.+++-.-.++++|.
T Consensus 302 ~s~LD~~~~~~l~~~l~~~~qt~i~~th 329 (359)
T 2o5v_A 302 TAELDPHRRQYLLDLAASVPQAIVTGTE 329 (359)
T ss_dssp GGCCCHHHHHHHHHHHHHSSEEEEEESS
T ss_pred cccCCHHHHHHHHHHHHhcCcEEEEEEe
Confidence 6799999999888777543345667777
No 466
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.92 E-value=0.17 Score=53.73 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=34.0
Q ss_pred hhHHHhhccCCh--HHHHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 4 QKILQQRKSLPI--ASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 4 ~~~~~~~~~~~~--~~~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+++.+..+.|+. .++.+.+...+..|+.+.|.||+||||||++..+.-..
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444555532 23334455567789999999999999999987776543
No 467
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=85.83 E-value=0.33 Score=41.54 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=16.4
Q ss_pred CEEEEEcCCCCChhccHhHH
Q 014085 30 DILIIVGETGSGKTTQLPQF 49 (431)
Q Consensus 30 ~~~vi~apTGsGKT~~~~~~ 49 (431)
..+++.||+|+|||+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999776444
No 468
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.82 E-value=0.34 Score=41.87 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..|..+++.|+.||||||++..+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999888776543
No 469
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=85.75 E-value=0.34 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCChhccHhHHhhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
|+.++|.||+||||||++..+...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 889999999999999888766543
No 470
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.70 E-value=0.48 Score=44.02 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
...++++.||+|+|||+++..+....
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CCceEEEECCCCccHHHHHHHHHHhC
Confidence 34579999999999998876665543
No 471
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.62 E-value=0.32 Score=40.11 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=19.4
Q ss_pred CCCEEEEEcCCCCChhccHhHHhh
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
++..++++|++|+|||+++..+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999988877654
No 472
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=85.45 E-value=0.69 Score=45.21 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=24.7
Q ss_pred HHHHHHHHHh--CCCEEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVR--KNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~--~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..+.+...+. ...++++.||+|+|||+++..+...
T Consensus 188 ~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 188 EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 3344555553 4568999999999999887666544
No 473
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.37 E-value=0.43 Score=41.31 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhcc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHAG 54 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~~ 54 (431)
+|..+++.|+.||||||++..+.....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999998877765543
No 474
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.29 E-value=0.44 Score=46.45 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
++.+++.||+|+|||+++..+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh
Confidence 3589999999999998776655543
No 475
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.17 E-value=0.45 Score=41.69 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.3
Q ss_pred CCCEEEEEcCCCCChhccHhHHhhhc
Q 014085 28 KNDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 28 ~g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
....+.|.||+||||||++..+....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999887766544
No 476
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=85.15 E-value=0.27 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.8
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHh
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFL 50 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~ 50 (431)
+.+|+.++|.||+||||||++..+.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHH
Confidence 3468899999999999998886653
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.08 E-value=0.94 Score=39.73 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.4
Q ss_pred hCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 27 RKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
..|..+++.|+.||||||++..+...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999888776544
No 478
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.04 E-value=0.53 Score=43.95 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=21.0
Q ss_pred HHHhCCCE--EEEEcCCCCChhccHhHHhh
Q 014085 24 EEVRKNDI--LIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 24 ~~~~~g~~--~vi~apTGsGKT~~~~~~~~ 51 (431)
..+..|+. +++.||.|+|||++...+..
T Consensus 17 ~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 17 NRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34446765 89999999999988765543
No 479
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.04 E-value=0.36 Score=45.62 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
..++++.||+|+|||+++..+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999998876665443
No 480
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=84.73 E-value=0.47 Score=39.72 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhccHhHHhhh
Q 014085 32 LIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 32 ~vi~apTGsGKT~~~~~~~~~ 52 (431)
++|.|++|||||+++..+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 678999999999888776644
No 481
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.65 E-value=0.43 Score=38.93 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
.+++.|++|+|||+++..+..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999988876653
No 482
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.38 E-value=0.46 Score=38.19 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999888766543
No 483
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.28 E-value=0.46 Score=43.24 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=15.8
Q ss_pred CCEEEEEcCCCCChhccHhHHhh
Q 014085 29 NDILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~ 51 (431)
...+.|.||+||||||++..+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999988866654
No 484
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=84.23 E-value=0.41 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.1
Q ss_pred hCCCEEEEEcCCCCChhccHhHH
Q 014085 27 RKNDILIIVGETGSGKTTQLPQF 49 (431)
Q Consensus 27 ~~g~~~vi~apTGsGKT~~~~~~ 49 (431)
.+|+.++|.||+||||||++..+
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 46789999999999999888766
No 485
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.03 E-value=0.48 Score=40.14 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+.++|+.||||||+...+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999888776554
No 486
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.87 E-value=0.47 Score=38.16 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999888776644
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.84 E-value=0.49 Score=38.30 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
.++++|++|+|||+++..+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999988876654
No 488
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.80 E-value=0.47 Score=46.83 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeC
Q 014085 20 KRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQ 66 (431)
Q Consensus 20 ~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~ 66 (431)
.++.--+..|+.++|.|++|+|||+++..++....... +..++++.
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s 278 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAM 278 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEE
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEe
Confidence 33433466789999999999999988777776654322 33344443
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.67 E-value=0.87 Score=51.30 Aligned_cols=92 Identities=20% Similarity=0.157 Sum_probs=0.0
Q ss_pred HhCCCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCchhHHHHHHhHHHHHHhCCccCCeEeEeEeecCCCChhH
Q 014085 26 VRKNDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPRRVAAVTVAKRVAEESGVELGQRVGYSIRFDDRTSTST 105 (431)
Q Consensus 26 ~~~g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (431)
+..|+.++|.||+|+|||+++..++...... +..++++.......... ++..+...... ......+...
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql~----A~~lGvd~~~L-----~i~~~~~lee 797 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY----ARKLGVDIDNL-----LCSQPDTGEQ 797 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH----HHHTTCCGGGC-----EEECCSSHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHHH----HHHcCCChhhe-----EEecCCcHHH
Q ss_pred hHHHHhcccCCCCCcEEEEecCC
Q 014085 106 RIKEALLDPYLSRYSAIIVDEAH 128 (431)
Q Consensus 106 ~~~~~~~~~~~~~~~~lViDEah 128 (431)
....+-.-..-.+++++|||+.+
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq 820 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVA 820 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCST
T ss_pred HHHHHHHHHHccCCCEEEEechh
No 490
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.67 E-value=0.21 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhc
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.+.+++.||+|+|||+++..+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4568999999999998876665543
No 491
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=83.64 E-value=0.37 Score=53.37 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCChhccHhHHhhh
Q 014085 18 VEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 18 ~Q~~~~~~~~~g~~~vi~apTGsGKT~~~~~~~~~ 52 (431)
+.+.+...+.+|+.+.|+|||||||||++..+...
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44556666778999999999999999998777643
No 492
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=83.50 E-value=0.52 Score=39.43 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++++|++|+|||+++..+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999888666543
No 493
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=83.40 E-value=0.72 Score=45.78 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=53.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC
Q 014085 254 PGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN 321 (431)
Q Consensus 254 ~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~ 321 (431)
.+.+||.+|++.-+....+.|.+. ++.+..+||+.+.+++..+...+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~---------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN---------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 467999999999999999988876 88899999999999998888888889999999996
No 494
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=83.35 E-value=2.3 Score=37.69 Aligned_cols=75 Identities=9% Similarity=0.104 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHHhcCCcCCCceEEEEcCCCCCHHHHhhhhCcCCCCCcEEEEecC------ccc-c
Q 014085 253 APGDILVFLTGQEEIESVERLVQERLLQLPEASRKLVTVPIFSSLPSEQQMRVFAPAAAGFRKVILATN------IAE-T 325 (431)
Q Consensus 253 ~~~~~lVF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~v~~lhg~~~~~~r~~i~~~f~~g~~~vLvaT~------~~~-~ 325 (431)
.+.++||.+||+.-++..++.+.+.... .+..+..++|+.........+. + ..+|+|+|+ +.. .
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~---~-~~~Iiv~Tp~~l~~~~~~~~ 195 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTH-----HVHTYGLIMGGSNRSAEAQKLG---N-GINIIVATPGRLLDHMQNTP 195 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTT-----CCSCEEEECSSSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhh-----cCceEEEEECCCCHHHHHHHhc---C-CCCEEEEcHHHHHHHHHccC
Confidence 3567999999999999999999887432 2566778899888765544332 2 378999995 222 2
Q ss_pred ccccCCcEEEE
Q 014085 326 SVTIPGIKYVI 336 (431)
Q Consensus 326 Gvdip~v~~VI 336 (431)
++++.++.+||
T Consensus 196 ~~~~~~l~~lV 206 (262)
T 3ly5_A 196 GFMYKNLQCLV 206 (262)
T ss_dssp TCCCTTCCEEE
T ss_pred CcccccCCEEE
Confidence 46777888887
No 495
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.15 E-value=0.88 Score=40.61 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=22.0
Q ss_pred HHHHHHhCCC-----EEEEEcCCCCChhccHhHHhh
Q 014085 21 RLVEEVRKND-----ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 21 ~~~~~~~~g~-----~~vi~apTGsGKT~~~~~~~~ 51 (431)
..+..+++|+ .+++.||+|+|||+++..++.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3455555543 689999999999977755544
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=83.13 E-value=0.54 Score=39.08 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhccHhHHhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLF 51 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~ 51 (431)
.++++|++|+|||+++..+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999988877654
No 497
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.13 E-value=1.3 Score=37.77 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCChhccHhHHhhhcccccCCcEEEEeCch
Q 014085 29 NDILIIVGETGSGKTTQLPQFLFHAGFCRDGKLIGVTQPR 68 (431)
Q Consensus 29 g~~~vi~apTGsGKT~~~~~~~~~~~~~~~~~~v~v~~p~ 68 (431)
|+++++-|+-||||||++..+..... .+...+..-.|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV--KDYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT--TTSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeeCCC
Confidence 57899999999999998876654432 223334444554
No 498
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=83.09 E-value=0.15 Score=44.58 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=17.2
Q ss_pred EEEEcCCCCChhccHhHHhhhc
Q 014085 32 LIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 32 ~vi~apTGsGKT~~~~~~~~~~ 53 (431)
+.|+||||||||+++..+....
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4578999999999887765543
No 499
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=82.99 E-value=0.57 Score=38.00 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhccHhHHhhhc
Q 014085 31 ILIIVGETGSGKTTQLPQFLFHA 53 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~~ 53 (431)
.++++|++|+|||+++..+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999998887766443
No 500
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=82.95 E-value=0.56 Score=38.52 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhccHhHHhhh
Q 014085 31 ILIIVGETGSGKTTQLPQFLFH 52 (431)
Q Consensus 31 ~~vi~apTGsGKT~~~~~~~~~ 52 (431)
.++++|++|+|||+++..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999888666543
Done!