Query 014086
Match_columns 431
No_of_seqs 394 out of 3075
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 01:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 7.5E-55 1.6E-59 385.8 30.8 258 96-361 78-337 (506)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-47 3E-52 362.4 30.7 256 100-357 2-351 (352)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 5.1E-46 1.1E-50 357.6 34.7 252 98-358 55-310 (578)
4 TIGR01628 PABP-1234 polyadenyl 100.0 5.8E-44 1.3E-48 356.7 37.0 252 102-357 1-366 (562)
5 KOG0145 RNA-binding protein EL 100.0 1.2E-42 2.5E-47 287.3 22.3 254 100-355 40-358 (360)
6 KOG0148 Apoptosis-promoting RN 100.0 4.3E-41 9.4E-46 279.8 23.4 227 99-360 4-243 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.3E-38 5.1E-43 308.1 29.1 241 100-357 1-353 (481)
8 KOG0127 Nucleolar protein fibr 100.0 6E-38 1.3E-42 284.8 22.6 252 101-357 5-380 (678)
9 TIGR01622 SF-CC1 splicing fact 100.0 5.3E-37 1.2E-41 300.0 29.4 250 98-356 86-449 (457)
10 TIGR01659 sex-lethal sex-letha 100.0 8.4E-37 1.8E-41 280.5 26.5 174 98-359 104-279 (346)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-35 3.3E-40 293.8 27.4 246 99-355 173-502 (509)
12 KOG0144 RNA-binding protein CU 100.0 1.6E-36 3.4E-41 268.3 18.0 255 100-357 33-506 (510)
13 TIGR01645 half-pint poly-U bin 100.0 4.6E-35 9.9E-40 282.2 28.4 149 98-248 104-269 (612)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.3E-35 1.1E-39 284.7 28.3 240 101-355 96-480 (481)
15 KOG0123 Polyadenylate-binding 100.0 5.3E-31 1.2E-35 243.2 22.0 241 102-356 2-247 (369)
16 KOG0123 Polyadenylate-binding 100.0 3.8E-31 8.2E-36 244.2 20.5 251 100-359 75-353 (369)
17 TIGR01645 half-pint poly-U bin 100.0 2.2E-28 4.7E-33 236.2 25.6 174 181-358 107-287 (612)
18 KOG0127 Nucleolar protein fibr 100.0 1.1E-29 2.5E-34 231.1 15.4 235 100-337 116-516 (678)
19 KOG0124 Polypyrimidine tract-b 100.0 2.8E-28 6E-33 211.6 19.0 248 101-352 113-532 (544)
20 KOG0110 RNA-binding protein (R 100.0 4E-28 8.7E-33 228.3 17.6 250 99-357 383-695 (725)
21 KOG0144 RNA-binding protein CU 100.0 1.4E-28 3.1E-33 218.0 12.1 173 182-360 35-211 (510)
22 KOG0131 Splicing factor 3b, su 99.9 2.7E-27 5.8E-32 186.4 13.0 173 100-359 8-181 (203)
23 KOG4212 RNA-binding protein hn 99.9 6.1E-26 1.3E-30 201.5 22.6 144 100-247 43-278 (608)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6.4E-26 1.4E-30 214.6 22.5 170 180-357 2-173 (352)
25 KOG0147 Transcriptional coacti 99.9 2.6E-27 5.5E-32 217.1 11.8 246 99-354 177-527 (549)
26 KOG0148 Apoptosis-promoting RN 99.9 6E-27 1.3E-31 195.6 12.7 152 102-263 63-236 (321)
27 KOG4211 Splicing factor hnRNP- 99.9 1.2E-24 2.6E-29 197.0 23.8 247 98-354 7-357 (510)
28 KOG0145 RNA-binding protein EL 99.9 6.8E-26 1.5E-30 188.1 14.0 172 179-358 39-212 (360)
29 TIGR01622 SF-CC1 splicing fact 99.9 6.4E-25 1.4E-29 214.9 22.0 171 180-355 88-266 (457)
30 KOG4205 RNA-binding protein mu 99.9 2.4E-24 5.2E-29 191.7 17.0 178 100-361 5-182 (311)
31 KOG0109 RNA-binding protein LA 99.9 2.7E-24 5.9E-29 181.6 14.6 154 102-361 3-156 (346)
32 TIGR01648 hnRNP-R-Q heterogene 99.9 1.1E-23 2.3E-28 203.6 20.3 190 153-356 19-223 (578)
33 KOG0117 Heterogeneous nuclear 99.9 1.4E-23 2.9E-28 187.5 18.5 189 152-358 43-251 (506)
34 TIGR01628 PABP-1234 polyadenyl 99.9 6.7E-24 1.5E-28 212.4 17.8 166 183-355 2-167 (562)
35 KOG0146 RNA-binding protein ET 99.9 2.6E-23 5.7E-28 173.4 13.3 262 97-359 15-369 (371)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2E-22 4.4E-27 200.0 18.8 168 179-356 173-376 (509)
37 KOG0110 RNA-binding protein (R 99.9 1.1E-22 2.4E-27 191.9 15.0 223 98-353 224-596 (725)
38 KOG0124 Polypyrimidine tract-b 99.9 1E-20 2.2E-25 164.8 16.9 169 182-354 114-289 (544)
39 KOG1190 Polypyrimidine tract-b 99.8 4.8E-20 1E-24 163.0 16.7 242 99-358 26-376 (492)
40 KOG4206 Spliceosomal protein s 99.8 2.2E-19 4.8E-24 148.0 18.6 207 101-353 9-220 (221)
41 KOG1365 RNA-binding protein Fu 99.8 4.3E-19 9.2E-24 155.7 19.8 254 98-358 57-365 (508)
42 PLN03134 glycine-rich RNA-bind 99.8 2E-19 4.3E-24 144.9 14.4 83 275-357 34-116 (144)
43 KOG0105 Alternative splicing f 99.8 1.7E-18 3.7E-23 136.9 19.0 173 99-343 4-176 (241)
44 KOG1548 Transcription elongati 99.8 2E-17 4.3E-22 143.8 19.5 204 98-356 131-353 (382)
45 KOG0120 Splicing factor U2AF, 99.8 3.5E-18 7.7E-23 159.7 15.7 245 100-355 174-492 (500)
46 PLN03134 glycine-rich RNA-bind 99.8 2.7E-18 5.8E-23 138.3 10.9 83 99-181 32-114 (144)
47 KOG0147 Transcriptional coacti 99.8 1.1E-18 2.3E-23 160.8 7.8 171 182-357 180-360 (549)
48 KOG1456 Heterogeneous nuclear 99.7 2.1E-16 4.5E-21 138.5 18.4 243 97-357 27-365 (494)
49 KOG4211 Splicing factor hnRNP- 99.7 6.2E-16 1.3E-20 140.9 16.1 167 183-359 12-186 (510)
50 KOG0149 Predicted RNA-binding 99.7 3.3E-16 7.1E-21 129.6 11.4 81 276-357 13-93 (247)
51 KOG1190 Polypyrimidine tract-b 99.7 7E-15 1.5E-19 130.6 19.5 236 102-354 151-490 (492)
52 KOG1457 RNA binding protein (c 99.7 3E-15 6.6E-20 122.3 15.0 227 98-342 31-273 (284)
53 PF00076 RRM_1: RNA recognitio 99.7 3.7E-16 8.1E-21 110.8 8.6 70 104-174 1-70 (70)
54 KOG0106 Alternative splicing f 99.7 3E-16 6.5E-21 131.2 8.6 168 102-353 2-169 (216)
55 KOG0122 Translation initiation 99.6 6.8E-16 1.5E-20 128.1 8.9 82 274-355 188-269 (270)
56 PF00076 RRM_1: RNA recognitio 99.6 8.4E-16 1.8E-20 109.0 7.9 70 278-348 1-70 (70)
57 KOG0122 Translation initiation 99.6 9E-16 2E-20 127.4 9.0 82 100-181 188-269 (270)
58 KOG4207 Predicted splicing fac 99.6 1.3E-15 2.8E-20 123.0 9.3 82 274-355 12-93 (256)
59 KOG0149 Predicted RNA-binding 99.6 6.3E-16 1.4E-20 127.9 7.7 78 101-179 12-89 (247)
60 KOG0121 Nuclear cap-binding pr 99.6 1.2E-15 2.5E-20 113.6 8.1 80 275-354 36-115 (153)
61 TIGR01659 sex-lethal sex-letha 99.6 1.5E-15 3.2E-20 140.2 10.7 83 273-355 105-187 (346)
62 PF14259 RRM_6: RNA recognitio 99.6 2.2E-15 4.8E-20 106.6 8.8 70 104-174 1-70 (70)
63 KOG0121 Nuclear cap-binding pr 99.6 1.4E-15 2.9E-20 113.2 6.8 82 98-179 33-114 (153)
64 KOG0125 Ataxin 2-binding prote 99.6 1.8E-15 4E-20 130.7 8.6 86 270-357 91-176 (376)
65 KOG0114 Predicted RNA-binding 99.6 7.5E-15 1.6E-19 104.9 9.2 80 275-357 18-97 (124)
66 PF14259 RRM_6: RNA recognitio 99.6 5.2E-15 1.1E-19 104.7 7.9 70 278-348 1-70 (70)
67 COG0724 RNA-binding proteins ( 99.6 1.8E-14 3.9E-19 132.5 13.7 169 101-335 115-285 (306)
68 PLN03120 nucleic acid binding 99.6 8E-15 1.7E-19 126.1 10.1 76 101-180 4-79 (260)
69 PLN03120 nucleic acid binding 99.6 9.4E-15 2E-19 125.6 10.4 76 276-355 5-80 (260)
70 KOG0126 Predicted RNA-binding 99.6 2.4E-16 5.2E-21 124.6 0.1 81 99-179 33-113 (219)
71 KOG0107 Alternative splicing f 99.6 1.8E-14 3.9E-19 113.6 9.4 78 276-358 11-88 (195)
72 KOG0113 U1 small nuclear ribon 99.6 7.1E-14 1.5E-18 119.5 13.7 94 264-357 90-183 (335)
73 KOG0114 Predicted RNA-binding 99.6 2.4E-14 5.2E-19 102.4 8.4 81 98-181 15-95 (124)
74 KOG0107 Alternative splicing f 99.5 1.3E-14 2.7E-19 114.5 7.5 75 101-180 10-84 (195)
75 KOG0113 U1 small nuclear ribon 99.5 1.8E-14 4E-19 123.0 8.8 80 100-179 100-179 (335)
76 KOG0125 Ataxin 2-binding prote 99.5 1.2E-14 2.6E-19 125.6 7.7 82 98-181 93-174 (376)
77 KOG4207 Predicted splicing fac 99.5 1.1E-14 2.4E-19 117.6 6.8 82 98-179 10-91 (256)
78 PLN03121 nucleic acid binding 99.5 3.9E-14 8.4E-19 119.7 9.9 78 99-180 3-80 (243)
79 PLN03213 repressor of silencin 99.5 2.8E-14 6.1E-19 129.7 8.9 77 101-181 10-88 (759)
80 KOG0105 Alternative splicing f 99.5 1.7E-13 3.7E-18 108.8 10.7 79 275-356 6-84 (241)
81 PLN03213 repressor of silencin 99.5 6.1E-14 1.3E-18 127.6 9.3 77 275-355 10-88 (759)
82 KOG4212 RNA-binding protein hn 99.5 4.5E-13 9.7E-18 120.2 14.3 168 181-353 44-292 (608)
83 KOG0111 Cyclophilin-type pepti 99.5 3.3E-14 7.1E-19 115.9 5.7 86 275-360 10-95 (298)
84 KOG0126 Predicted RNA-binding 99.5 5E-15 1.1E-19 117.2 0.9 79 275-353 35-113 (219)
85 smart00362 RRM_2 RNA recogniti 99.5 2.9E-13 6.3E-18 96.1 9.7 72 103-176 1-72 (72)
86 PLN03121 nucleic acid binding 99.5 3.5E-13 7.7E-18 113.9 10.5 76 275-354 5-80 (243)
87 smart00362 RRM_2 RNA recogniti 99.5 4E-13 8.7E-18 95.4 9.1 72 277-350 1-72 (72)
88 KOG1456 Heterogeneous nuclear 99.5 1.1E-11 2.4E-16 109.2 19.5 163 182-357 32-201 (494)
89 smart00360 RRM RNA recognition 99.4 5.6E-13 1.2E-17 94.3 9.0 71 106-176 1-71 (71)
90 KOG0130 RNA-binding protein RB 99.4 5E-13 1.1E-17 100.5 8.2 87 272-358 69-155 (170)
91 KOG0130 RNA-binding protein RB 99.4 1.8E-13 3.9E-18 102.9 5.7 80 100-179 71-150 (170)
92 smart00360 RRM RNA recognition 99.4 6E-13 1.3E-17 94.1 8.2 71 280-350 1-71 (71)
93 KOG0131 Splicing factor 3b, su 99.4 4E-13 8.8E-18 106.7 7.0 79 275-353 9-87 (203)
94 KOG0111 Cyclophilin-type pepti 99.4 2.2E-13 4.8E-18 111.2 5.5 84 99-182 8-91 (298)
95 PF13893 RRM_5: RNA recognitio 99.4 1.6E-12 3.5E-17 87.2 8.0 56 292-352 1-56 (56)
96 KOG0108 mRNA cleavage and poly 99.4 1.8E-12 3.8E-17 121.3 10.9 84 276-359 19-102 (435)
97 cd00590 RRM RRM (RNA recogniti 99.4 2.7E-12 5.9E-17 91.6 9.6 74 277-351 1-74 (74)
98 cd00590 RRM RRM (RNA recogniti 99.4 3.2E-12 6.9E-17 91.2 9.9 74 103-177 1-74 (74)
99 KOG0108 mRNA cleavage and poly 99.4 8.3E-13 1.8E-17 123.5 8.5 80 102-181 19-98 (435)
100 KOG0128 RNA-binding protein SA 99.4 3.1E-13 6.7E-18 131.2 3.6 233 98-357 568-817 (881)
101 KOG0132 RNA polymerase II C-te 99.3 3.9E-11 8.5E-16 115.4 16.4 77 275-357 421-497 (894)
102 smart00361 RRM_1 RNA recogniti 99.3 4.1E-12 8.9E-17 89.3 7.4 62 289-350 2-70 (70)
103 KOG0129 Predicted RNA-binding 99.3 4.2E-11 9E-16 110.6 15.9 185 97-351 255-450 (520)
104 smart00361 RRM_1 RNA recogniti 99.3 7.3E-12 1.6E-16 88.0 8.3 62 115-176 2-70 (70)
105 KOG4660 Protein Mei2, essentia 99.3 9.1E-12 2E-16 115.9 11.2 73 98-175 72-144 (549)
106 COG0724 RNA-binding proteins ( 99.3 1E-11 2.2E-16 114.1 10.1 80 275-354 115-194 (306)
107 KOG0116 RasGAP SH3 binding pro 99.3 3.4E-11 7.3E-16 112.1 12.2 82 276-358 289-370 (419)
108 PF13893 RRM_5: RNA recognitio 99.3 1.6E-11 3.5E-16 82.2 7.5 56 118-178 1-56 (56)
109 KOG4210 Nuclear localization s 99.3 1.6E-11 3.4E-16 110.0 9.0 181 100-358 87-267 (285)
110 KOG0132 RNA polymerase II C-te 99.2 1.7E-10 3.7E-15 111.1 15.1 75 100-180 420-494 (894)
111 KOG1365 RNA-binding protein Fu 99.2 1.8E-11 3.9E-16 108.3 7.0 143 102-248 162-347 (508)
112 KOG0146 RNA-binding protein ET 99.2 1.5E-11 3.3E-16 103.5 5.6 85 97-181 281-365 (371)
113 KOG0415 Predicted peptidyl pro 99.2 1E-11 2.2E-16 108.7 4.6 83 98-180 236-318 (479)
114 KOG4307 RNA binding protein RB 99.2 1.4E-10 3E-15 110.1 12.1 77 275-351 867-943 (944)
115 KOG4307 RNA binding protein RB 99.2 2.5E-10 5.4E-15 108.5 12.4 164 184-351 314-510 (944)
116 KOG0109 RNA-binding protein LA 99.2 3.7E-11 8.1E-16 102.6 5.7 72 276-355 3-74 (346)
117 KOG4454 RNA binding protein (R 99.2 7E-12 1.5E-16 102.6 1.2 140 97-340 5-148 (267)
118 KOG4206 Spliceosomal protein s 99.2 1.4E-10 2.9E-15 96.4 8.4 80 276-358 10-93 (221)
119 KOG0153 Predicted RNA-binding 99.1 7.6E-10 1.6E-14 97.2 13.0 77 272-354 225-302 (377)
120 KOG0112 Large RNA-binding prot 99.1 2.2E-10 4.8E-15 112.1 10.3 167 95-358 366-534 (975)
121 KOG4208 Nucleolar RNA-binding 99.1 2.4E-10 5.3E-15 93.2 7.9 81 275-355 49-130 (214)
122 KOG4208 Nucleolar RNA-binding 99.1 2.6E-10 5.6E-15 93.1 7.9 84 98-181 46-130 (214)
123 KOG0120 Splicing factor U2AF, 99.1 5.1E-10 1.1E-14 105.5 10.2 152 98-250 286-479 (500)
124 KOG0415 Predicted peptidyl pro 99.1 2.4E-10 5.3E-15 100.2 6.3 84 274-357 238-321 (479)
125 KOG4661 Hsp27-ERE-TATA-binding 99.0 4.6E-10 9.9E-15 104.4 7.4 83 98-180 402-484 (940)
126 KOG4205 RNA-binding protein mu 99.0 8.4E-10 1.8E-14 99.1 8.3 82 100-182 96-177 (311)
127 KOG4661 Hsp27-ERE-TATA-binding 99.0 7.7E-10 1.7E-14 102.9 7.3 82 274-355 404-485 (940)
128 KOG0153 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 95.9 7.8 77 98-180 225-302 (377)
129 KOG0226 RNA-binding proteins [ 99.0 6.3E-10 1.4E-14 93.5 5.2 169 102-353 97-268 (290)
130 KOG0128 RNA-binding protein SA 98.9 7.7E-11 1.7E-15 114.8 -1.5 135 100-248 666-800 (881)
131 KOG1457 RNA binding protein (c 98.9 7.6E-09 1.6E-13 85.3 10.0 87 275-361 34-124 (284)
132 PF04059 RRM_2: RNA recognitio 98.9 1.2E-08 2.6E-13 74.9 8.6 81 276-356 2-88 (97)
133 PF04059 RRM_2: RNA recognitio 98.8 4.5E-08 9.7E-13 72.0 9.1 79 101-179 1-85 (97)
134 KOG0533 RRM motif-containing p 98.8 1.9E-08 4.1E-13 86.8 8.1 80 100-180 82-161 (243)
135 KOG0533 RRM motif-containing p 98.8 8.9E-08 1.9E-12 82.6 12.0 83 275-358 83-165 (243)
136 KOG4660 Protein Mei2, essentia 98.8 1.3E-08 2.9E-13 95.2 6.4 72 272-348 72-143 (549)
137 KOG2193 IGF-II mRNA-binding pr 98.7 3.3E-09 7.2E-14 95.3 1.0 158 102-358 2-160 (584)
138 PF11608 Limkain-b1: Limkain b 98.7 6.7E-08 1.5E-12 67.1 7.0 70 102-181 3-77 (90)
139 KOG4209 Splicing factor RNPS1, 98.7 2E-08 4.4E-13 87.0 5.4 80 99-179 99-178 (231)
140 KOG0116 RasGAP SH3 binding pro 98.7 3.9E-08 8.6E-13 91.9 6.8 78 100-178 287-364 (419)
141 KOG4209 Splicing factor RNPS1, 98.6 9.2E-08 2E-12 82.9 7.8 81 274-355 100-180 (231)
142 PF11608 Limkain-b1: Limkain b 98.6 3.2E-07 6.9E-12 63.8 8.4 71 276-356 3-78 (90)
143 KOG3152 TBP-binding protein, a 98.6 2.3E-08 5E-13 84.4 3.2 74 100-173 73-158 (278)
144 KOG1548 Transcription elongati 98.6 1.3E-07 2.8E-12 83.3 7.8 81 275-356 134-222 (382)
145 KOG0226 RNA-binding proteins [ 98.6 5.4E-08 1.2E-12 82.1 4.9 82 98-179 187-268 (290)
146 KOG4676 Splicing factor, argin 98.6 1.7E-08 3.8E-13 90.0 1.7 207 102-350 8-221 (479)
147 KOG0106 Alternative splicing f 98.6 6.2E-08 1.4E-12 81.6 4.9 75 276-358 2-76 (216)
148 KOG0151 Predicted splicing reg 98.5 3.1E-07 6.8E-12 88.2 9.0 86 272-357 171-259 (877)
149 KOG4454 RNA binding protein (R 98.5 6.6E-08 1.4E-12 79.6 3.2 78 274-353 8-85 (267)
150 KOG0151 Predicted splicing reg 98.5 2.5E-07 5.4E-12 88.9 7.6 82 98-179 171-255 (877)
151 KOG1995 Conserved Zn-finger pr 98.5 4.8E-07 1E-11 80.6 7.8 85 273-357 64-156 (351)
152 KOG4849 mRNA cleavage factor I 98.4 3.9E-06 8.5E-11 74.1 11.6 75 275-349 80-156 (498)
153 KOG1995 Conserved Zn-finger pr 98.3 1.1E-06 2.3E-11 78.4 4.9 84 99-182 64-155 (351)
154 PF08777 RRM_3: RNA binding mo 98.2 3.3E-06 7.2E-11 63.8 6.4 71 276-352 2-77 (105)
155 PF08777 RRM_3: RNA binding mo 98.2 4.1E-06 8.8E-11 63.3 5.4 59 102-166 2-60 (105)
156 KOG4849 mRNA cleavage factor I 98.1 3.8E-05 8.3E-10 68.0 11.1 76 102-177 81-158 (498)
157 COG5175 MOT2 Transcriptional r 98.0 1.4E-05 3E-10 70.3 6.6 90 100-189 113-212 (480)
158 COG5175 MOT2 Transcriptional r 97.9 3.2E-05 7E-10 68.1 7.7 80 275-354 114-202 (480)
159 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.9E-05 1.1E-09 49.5 5.4 53 101-160 1-53 (53)
160 KOG1855 Predicted RNA-binding 97.8 0.00027 5.9E-09 64.7 11.6 91 249-339 205-308 (484)
161 KOG4210 Nuclear localization s 97.8 1.2E-05 2.7E-10 72.3 3.2 79 102-181 185-264 (285)
162 PF14605 Nup35_RRM_2: Nup53/35 97.8 9.3E-05 2E-09 48.2 5.8 52 276-334 2-53 (53)
163 KOG3152 TBP-binding protein, a 97.8 1.8E-05 4E-10 67.2 3.0 71 276-346 75-157 (278)
164 KOG2314 Translation initiation 97.7 9.4E-05 2E-09 69.9 6.9 75 276-351 59-140 (698)
165 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00049 1.1E-08 51.1 7.5 76 276-353 7-90 (100)
166 KOG0115 RNA-binding protein p5 97.5 0.0003 6.5E-09 60.1 6.4 90 155-248 6-95 (275)
167 KOG0115 RNA-binding protein p5 97.4 0.0011 2.4E-08 56.7 9.4 104 236-353 5-112 (275)
168 KOG2416 Acinus (induces apopto 97.4 0.00035 7.7E-09 66.5 7.1 82 271-358 440-525 (718)
169 PF08952 DUF1866: Domain of un 97.4 0.00063 1.4E-08 53.6 7.2 59 290-357 51-109 (146)
170 KOG2314 Translation initiation 97.4 0.00057 1.2E-08 64.7 7.7 76 100-176 57-139 (698)
171 KOG1855 Predicted RNA-binding 97.4 0.00016 3.6E-09 66.0 4.0 68 99-166 229-309 (484)
172 KOG2416 Acinus (induces apopto 97.3 0.00026 5.6E-09 67.4 4.4 77 99-181 442-522 (718)
173 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0011 2.4E-08 49.3 6.8 78 100-179 5-90 (100)
174 KOG1996 mRNA splicing factor [ 97.3 0.00084 1.8E-08 58.4 6.7 65 289-353 300-365 (378)
175 KOG2202 U2 snRNP splicing fact 97.3 0.00015 3.2E-09 62.1 2.0 63 290-353 83-146 (260)
176 PF08952 DUF1866: Domain of un 97.2 0.0014 3E-08 51.8 6.7 55 117-180 52-106 (146)
177 KOG0129 Predicted RNA-binding 97.2 0.0016 3.4E-08 61.4 8.2 64 99-162 368-432 (520)
178 KOG4676 Splicing factor, argin 97.1 0.00077 1.7E-08 61.0 4.9 77 276-353 8-87 (479)
179 KOG2202 U2 snRNP splicing fact 97.0 0.00031 6.7E-09 60.1 1.8 63 116-179 83-146 (260)
180 KOG1996 mRNA splicing factor [ 96.8 0.0043 9.4E-08 54.1 6.7 76 103-178 283-364 (378)
181 KOG1924 RhoA GTPase effector D 96.6 0.0079 1.7E-07 59.6 7.6 17 151-167 207-223 (1102)
182 PF08675 RNA_bind: RNA binding 96.5 0.016 3.5E-07 40.8 6.8 59 98-165 6-64 (87)
183 PF10309 DUF2414: Protein of u 96.3 0.027 5.8E-07 37.6 6.7 54 276-337 6-62 (62)
184 PF08675 RNA_bind: RNA binding 96.3 0.027 5.9E-07 39.7 6.8 54 276-338 10-63 (87)
185 KOG2318 Uncharacterized conser 96.2 0.014 3.1E-07 55.9 7.0 80 98-177 171-304 (650)
186 PF10309 DUF2414: Protein of u 96.1 0.037 8E-07 36.9 6.6 54 102-163 6-62 (62)
187 KOG0112 Large RNA-binding prot 96.1 0.0081 1.8E-07 60.5 4.8 76 99-180 453-530 (975)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.015 3.3E-07 48.5 5.7 81 276-356 8-99 (176)
189 KOG2068 MOT2 transcription fac 96.0 0.0022 4.7E-08 57.5 0.3 82 100-181 76-163 (327)
190 PF04847 Calcipressin: Calcipr 95.9 0.025 5.3E-07 47.5 6.3 64 288-357 8-73 (184)
191 PF15023 DUF4523: Protein of u 95.8 0.057 1.2E-06 42.2 7.4 72 274-353 85-160 (166)
192 PF15023 DUF4523: Protein of u 95.7 0.059 1.3E-06 42.1 7.2 74 98-179 83-160 (166)
193 PF07576 BRAP2: BRCA1-associat 95.4 0.2 4.4E-06 38.1 9.1 67 276-344 14-81 (110)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.017 3.6E-07 48.4 3.5 70 100-169 6-81 (176)
195 PF11767 SET_assoc: Histone ly 95.4 0.056 1.2E-06 36.7 5.3 56 285-349 10-65 (66)
196 KOG2193 IGF-II mRNA-binding pr 95.1 0.016 3.4E-07 53.3 2.8 77 276-358 2-79 (584)
197 KOG4574 RNA-binding protein (c 95.0 0.029 6.3E-07 56.3 4.3 78 278-361 301-380 (1007)
198 KOG2591 c-Mpl binding protein, 94.7 0.5 1.1E-05 45.5 11.4 69 276-351 176-248 (684)
199 PF07576 BRAP2: BRCA1-associat 94.7 0.28 6E-06 37.3 8.1 67 102-170 14-81 (110)
200 PF03880 DbpA: DbpA RNA bindin 94.7 0.21 4.6E-06 35.1 7.0 59 285-352 11-74 (74)
201 KOG2068 MOT2 transcription fac 94.5 0.016 3.4E-07 52.1 1.2 80 276-355 78-163 (327)
202 KOG2135 Proteins containing th 94.5 0.025 5.4E-07 52.9 2.5 76 100-182 371-447 (526)
203 KOG2253 U1 snRNP complex, subu 94.3 0.046 1E-06 53.5 3.9 74 270-352 35-108 (668)
204 KOG2591 c-Mpl binding protein, 94.2 0.092 2E-06 50.3 5.5 68 101-175 175-246 (684)
205 KOG2135 Proteins containing th 94.1 0.032 6.9E-07 52.3 2.3 74 276-356 373-447 (526)
206 PF04847 Calcipressin: Calcipr 94.1 0.13 2.8E-06 43.2 5.7 60 114-179 8-69 (184)
207 KOG4285 Mitotic phosphoprotein 94.1 0.13 2.7E-06 45.5 5.7 75 275-357 197-272 (350)
208 KOG0804 Cytoplasmic Zn-finger 94.0 0.15 3.3E-06 47.7 6.3 68 275-344 74-142 (493)
209 KOG4285 Mitotic phosphoprotein 93.5 0.28 6.1E-06 43.4 6.8 72 101-180 197-269 (350)
210 PF04931 DNA_pol_phi: DNA poly 93.2 0.034 7.4E-07 58.4 0.9 7 118-124 741-747 (784)
211 PF04147 Nop14: Nop14-like fam 92.9 0.085 1.8E-06 55.5 3.4 14 113-126 426-439 (840)
212 KOG0804 Cytoplasmic Zn-finger 92.6 0.35 7.5E-06 45.4 6.5 73 96-170 69-142 (493)
213 PRK11634 ATP-dependent RNA hel 92.6 2 4.2E-05 44.1 12.5 62 285-355 497-563 (629)
214 KOG4483 Uncharacterized conser 91.9 0.25 5.4E-06 45.4 4.6 60 101-168 391-451 (528)
215 KOG4574 RNA-binding protein (c 91.9 0.11 2.3E-06 52.4 2.4 70 104-179 301-372 (1007)
216 KOG0921 Dosage compensation co 91.9 1.2 2.5E-05 46.1 9.4 13 322-334 1086-1098(1282)
217 KOG2253 U1 snRNP complex, subu 91.1 0.15 3.2E-06 50.1 2.4 70 99-177 38-107 (668)
218 KOG1999 RNA polymerase II tran 90.4 0.96 2.1E-05 46.8 7.4 28 142-169 209-236 (1024)
219 KOG2236 Uncharacterized conser 89.9 6.3 0.00014 37.5 11.7 10 198-207 247-256 (483)
220 PF07292 NID: Nmi/IFP 35 domai 89.4 0.41 8.8E-06 34.6 3.0 57 146-202 1-73 (88)
221 PF03880 DbpA: DbpA RNA bindin 88.5 2 4.4E-05 30.1 6.0 58 112-178 12-74 (74)
222 PF11767 SET_assoc: Histone ly 88.3 2.8 6.1E-05 28.5 6.2 55 112-175 11-65 (66)
223 KOG4019 Calcineurin-mediated s 88.2 0.58 1.3E-05 38.3 3.4 78 276-359 11-94 (193)
224 KOG2318 Uncharacterized conser 87.9 2.5 5.4E-05 41.2 7.8 81 274-354 173-307 (650)
225 KOG0921 Dosage compensation co 84.3 4 8.7E-05 42.4 7.6 7 222-228 899-905 (1282)
226 PF10567 Nab6_mRNP_bdg: RNA-re 82.6 37 0.00079 30.6 12.5 156 181-338 15-212 (309)
227 KOG2891 Surface glycoprotein [ 78.5 1.5 3.3E-05 38.4 2.2 34 276-309 150-195 (445)
228 KOG4410 5-formyltetrahydrofola 77.4 12 0.00026 33.2 7.2 47 275-327 330-377 (396)
229 KOG2141 Protein involved in hi 75.8 1.3 2.9E-05 44.3 1.2 24 320-343 624-647 (822)
230 PF14111 DUF4283: Domain of un 75.4 4.6 0.0001 32.7 4.2 35 277-311 106-141 (153)
231 smart00596 PRE_C2HC PRE_C2HC d 74.6 5.5 0.00012 27.2 3.6 63 116-181 2-65 (69)
232 KOG2891 Surface glycoprotein [ 73.1 1.1 2.3E-05 39.3 -0.2 68 101-168 149-247 (445)
233 PF07530 PRE_C2HC: Associated 72.9 7.5 0.00016 26.7 4.0 63 116-181 2-65 (68)
234 KOG4410 5-formyltetrahydrofola 72.8 9.2 0.0002 33.9 5.4 48 101-154 330-378 (396)
235 PF10567 Nab6_mRNP_bdg: RNA-re 72.7 5.7 0.00012 35.5 4.2 147 100-247 14-213 (309)
236 PF02724 CDC45: CDC45-like pro 72.5 1.6 3.5E-05 44.5 1.0 13 234-246 400-412 (622)
237 PF07292 NID: Nmi/IFP 35 domai 72.4 5.2 0.00011 29.0 3.3 68 228-296 1-73 (88)
238 KOG2141 Protein involved in hi 68.8 2.2 4.7E-05 42.9 0.9 11 284-294 553-563 (822)
239 KOG2295 C2H2 Zn-finger protein 68.1 0.67 1.5E-05 44.7 -2.6 71 100-170 230-300 (648)
240 KOG3064 RNA-binding nuclear pr 67.2 3.7 7.9E-05 35.7 1.8 7 146-152 284-290 (303)
241 COG5638 Uncharacterized conser 65.1 17 0.00037 34.0 5.7 37 100-136 145-186 (622)
242 KOG4019 Calcineurin-mediated s 64.9 5.2 0.00011 33.0 2.2 75 101-181 10-90 (193)
243 KOG4213 RNA-binding protein La 63.9 9.5 0.0002 31.4 3.5 58 101-162 111-169 (205)
244 PF02724 CDC45: CDC45-like pro 63.9 3.7 8E-05 42.0 1.5 16 232-247 395-410 (622)
245 KOG2038 CAATT-binding transcri 63.4 7.1 0.00015 39.8 3.2 15 106-120 960-974 (988)
246 TIGR02542 B_forsyth_147 Bacter 61.3 38 0.00082 25.7 5.9 77 109-205 11-98 (145)
247 COG4371 Predicted membrane pro 61.0 19 0.00042 31.3 5.0 11 394-404 82-92 (334)
248 PF03468 XS: XS domain; Inter 60.5 5.6 0.00012 30.7 1.6 50 277-329 10-68 (116)
249 TIGR00927 2A1904 K+-dependent 60.3 3.7 8E-05 43.1 0.7 10 102-111 905-914 (1096)
250 PF03468 XS: XS domain; Inter 59.4 11 0.00023 29.1 3.0 55 103-160 10-74 (116)
251 KOG2295 C2H2 Zn-finger protein 58.3 1.5 3.2E-05 42.5 -2.3 70 275-344 231-300 (648)
252 PF02714 DUF221: Domain of unk 57.5 18 0.00039 33.6 4.8 56 146-203 1-56 (325)
253 smart00596 PRE_C2HC PRE_C2HC d 55.8 33 0.00072 23.5 4.5 61 290-353 2-63 (69)
254 KOG3875 Peroxisomal biogenesis 54.7 39 0.00084 30.6 6.0 8 423-430 103-110 (362)
255 PF15513 DUF4651: Domain of un 54.6 31 0.00066 23.1 4.0 20 290-309 9-28 (62)
256 PF07423 DUF1510: Protein of u 54.4 12 0.00026 32.3 2.8 11 113-123 150-160 (217)
257 KOG4483 Uncharacterized conser 54.1 27 0.00058 32.7 5.0 55 275-336 391-446 (528)
258 PF15513 DUF4651: Domain of un 53.5 17 0.00038 24.2 2.8 18 116-133 9-26 (62)
259 PF07530 PRE_C2HC: Associated 52.4 50 0.0011 22.6 5.0 63 290-355 2-65 (68)
260 PRK14548 50S ribosomal protein 51.9 58 0.0013 23.4 5.5 56 104-162 23-80 (84)
261 TIGR00927 2A1904 K+-dependent 51.8 7.6 0.00016 40.9 1.3 10 143-152 931-940 (1096)
262 KOG4365 Uncharacterized conser 51.3 2.8 6E-05 39.4 -1.6 81 276-357 4-84 (572)
263 COG5193 LHP1 La protein, small 50.8 7.2 0.00016 36.4 0.9 60 101-160 174-243 (438)
264 KOG2375 Protein interacting wi 50.5 42 0.00091 34.6 6.2 6 339-344 530-535 (756)
265 KOG4008 rRNA processing protei 49.2 15 0.00032 31.8 2.5 37 96-132 35-71 (261)
266 PTZ00415 transmission-blocking 49.1 5.4 0.00012 44.3 -0.1 8 128-135 286-293 (2849)
267 KOG4365 Uncharacterized conser 48.6 3.5 7.6E-05 38.8 -1.4 78 101-179 3-80 (572)
268 TIGR03636 L23_arch archaeal ri 44.4 98 0.0021 21.8 5.6 56 104-162 16-73 (77)
269 COG4547 CobT Cobalamin biosynt 40.6 13 0.00029 35.5 1.0 9 168-176 426-434 (620)
270 KOG4008 rRNA processing protei 39.6 27 0.00058 30.3 2.5 33 274-306 39-71 (261)
271 KOG2147 Nucleolar protein invo 39.0 35 0.00075 34.9 3.6 18 109-126 388-409 (823)
272 KOG2773 Apoptosis antagonizing 38.2 15 0.00033 35.0 1.0 6 344-349 446-451 (483)
273 COG5193 LHP1 La protein, small 36.2 16 0.00035 34.2 0.8 60 276-335 175-244 (438)
274 PF02714 DUF221: Domain of unk 36.2 41 0.00089 31.3 3.6 36 320-357 1-36 (325)
275 KOG1295 Nonsense-mediated deca 36.1 44 0.00096 31.3 3.6 67 276-342 8-77 (376)
276 COG5638 Uncharacterized conser 36.1 1.6E+02 0.0036 27.8 7.1 81 273-353 144-296 (622)
277 PRK14548 50S ribosomal protein 34.4 1.6E+02 0.0034 21.2 5.5 56 278-336 23-80 (84)
278 KOG4213 RNA-binding protein La 33.7 62 0.0014 26.8 3.7 71 276-351 112-183 (205)
279 KOG3600 Thyroid hormone recept 33.1 2.8E+02 0.0061 30.8 8.9 29 280-308 766-794 (2238)
280 KOG1295 Nonsense-mediated deca 32.9 51 0.0011 30.9 3.5 69 100-168 6-77 (376)
281 KOG4264 Nucleo-cytoplasmic pro 32.9 19 0.00041 35.0 0.7 9 319-327 443-451 (694)
282 TIGR03636 L23_arch archaeal ri 31.2 1.9E+02 0.0041 20.4 5.6 56 278-336 16-73 (77)
283 KOG3424 40S ribosomal protein 30.8 1.8E+02 0.004 22.3 5.4 46 112-158 34-84 (132)
284 PF06495 Transformer: Fruit fl 29.3 87 0.0019 25.8 3.8 8 419-426 161-168 (182)
285 PRK11901 hypothetical protein; 29.2 91 0.002 28.7 4.4 59 276-339 246-306 (327)
286 PF11823 DUF3343: Protein of u 29.0 2E+02 0.0042 19.8 6.1 62 144-207 2-64 (73)
287 PF03439 Spt5-NGN: Early trans 27.9 1.4E+02 0.003 21.4 4.4 34 301-339 33-66 (84)
288 KOG0156 Cytochrome P450 CYP2 s 27.4 1.2E+02 0.0026 30.2 5.3 62 102-173 33-97 (489)
289 COG5593 Nucleic-acid-binding p 26.7 39 0.00085 33.1 1.7 20 103-122 800-819 (821)
290 KOG1308 Hsp70-interacting prot 26.2 1.1E+02 0.0024 28.6 4.3 21 340-360 245-265 (377)
291 KOG2236 Uncharacterized conser 26.0 2.3E+02 0.0051 27.5 6.5 7 105-111 188-194 (483)
292 KOG3753 Circadian clock protei 25.6 3E+02 0.0064 29.3 7.5 18 275-292 593-610 (1114)
293 PF04026 SpoVG: SpoVG; InterP 25.6 1.2E+02 0.0027 21.8 3.7 26 127-152 2-27 (84)
294 PF03896 TRAP_alpha: Transloco 24.5 28 0.00061 31.6 0.3 8 101-108 84-91 (285)
295 PRK11901 hypothetical protein; 24.3 2.6E+02 0.0056 25.9 6.3 66 96-166 240-307 (327)
296 TIGR01651 CobT cobaltochelatas 24.3 49 0.0011 33.2 2.0 11 101-111 295-305 (600)
297 KOG1980 Uncharacterized conser 23.6 51 0.0011 33.2 1.9 16 117-132 466-481 (754)
298 PF05470 eIF-3c_N: Eukaryotic 23.5 51 0.0011 33.6 1.9 12 112-123 211-222 (595)
299 COG4907 Predicted membrane pro 23.5 1.9E+02 0.0041 28.1 5.4 41 289-339 488-537 (595)
300 PF11411 DNA_ligase_IV: DNA li 23.3 66 0.0014 18.9 1.6 16 111-126 19-34 (36)
301 PRK13259 regulatory protein Sp 22.7 1.4E+02 0.003 22.0 3.5 26 127-152 2-27 (94)
302 PF07423 DUF1510: Protein of u 22.5 69 0.0015 27.8 2.3 11 153-163 152-162 (217)
303 PF05764 YL1: YL1 nuclear prot 22.3 28 0.0006 30.9 -0.2 7 286-292 184-190 (240)
304 KOG1984 Vesicle coat complex C 22.2 2.2E+02 0.0048 30.2 6.0 59 369-427 185-246 (1007)
305 KOG1923 Rac1 GTPase effector F 21.7 5E+02 0.011 27.2 8.2 11 421-431 343-353 (830)
306 COG0150 PurM Phosphoribosylami 20.3 39 0.00085 31.3 0.4 48 115-166 275-322 (345)
307 KOG2391 Vacuolar sorting prote 20.0 5.3E+02 0.012 24.1 7.3 10 421-430 196-205 (365)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.5e-55 Score=385.83 Aligned_cols=258 Identities=42% Similarity=0.687 Sum_probs=244.8
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC-CeEee
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIR 174 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~-g~~i~ 174 (431)
..+++.+.|||+.||.++.+++|.-+|.+.|+|-.++|++++.+|.+||||||+|.+.++|++|++.||+..|. |+.|.
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999885 99999
Q ss_pred eccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCC
Q 014086 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (431)
Q Consensus 175 v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (431)
|..+..+++|||+|||+++++++|.+.+++.++.|..+.+...+....++||||||+|.++..|..|.+.|-...+.+.+
T Consensus 158 vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 158 VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCC-CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHH
Q 014086 255 NAPTVSWADPRNVDS-SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (431)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~A 333 (431)
..+.|.|+.+..... ......+.|||+||+.++|++.|+.+|+.||.|.+|+.++| ||||.|.+.++|.+|
T Consensus 238 n~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 238 NAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKA 309 (506)
T ss_pred CcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHH
Confidence 999999999987654 34566789999999999999999999999999999999866 899999999999999
Q ss_pred HHhcCCCccCCcEEEEEeccCCCCCCCC
Q 014086 334 LKNTEKYELDGQALECSLAKPQADQKSA 361 (431)
Q Consensus 334 l~~l~~~~~~g~~l~v~~a~~~~~~~~~ 361 (431)
+..+||+.|+|..|.|.+|+|....+..
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHHhcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999999998876544
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.4e-47 Score=362.44 Aligned_cols=256 Identities=20% Similarity=0.379 Sum_probs=227.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|||+|||+++|+++|+++|+.||+|.+|+|++++.+|+++|||||+|.+.++|.+||+.|++..|.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred c------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccC
Q 014086 180 A------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (431)
Q Consensus 180 ~------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 253 (431)
+ ..+|||+|||..+++++|+.+|+.+|. |..+.++.+ ..++.++|||||+|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 3 357999999999999999999999999 889999887 56789999999999999999999999998766554
Q ss_pred CCCCccccCCCCCCCC----------------------------------------------------------------
Q 014086 254 TNAPTVSWADPRNVDS---------------------------------------------------------------- 269 (431)
Q Consensus 254 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 269 (431)
...+.+.|+.......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 4556666653222000
Q ss_pred ------------------------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeC
Q 014086 270 ------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (431)
Q Consensus 270 ------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~ 325 (431)
.....+.+|||+|||+.+++++|+++|++||.|.+|+|+++..++.+||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00111236999999999999999999999999999999999988889999999999
Q ss_pred CHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 326 ERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 326 ~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
+.++|.+||..|||..|.||.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999986653
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=5.1e-46 Score=357.55 Aligned_cols=252 Identities=35% Similarity=0.602 Sum_probs=226.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC-CeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~-g~~i~v~ 176 (431)
+...++|||+|||+++++++|+++|++||.|.+|+|+++ .+|+++|||||+|.+.++|.+||+.||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 445789999999999999999999999999999999999 78999999999999999999999999999885 8999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCC
Q 014086 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (431)
Q Consensus 177 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (431)
.+...++|||+|||+.+++++|.+.|+.++..+..+.+.......+++++||||+|.++.+|..|+..++...+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999876666665554456678899999999999999999999987777788999
Q ss_pred CccccCCCCCCCCC-CCCcccEEEEecCCCCCCHHHHHHHHhcc--ccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHH
Q 014086 257 PTVSWADPRNVDSS-GASQVKAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (431)
Q Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~A 333 (431)
+.|.|+.+...... .....++|||+||+.++|+++|+++|+.| |.|.+|.+++ +||||+|.+.++|.+|
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHH
Confidence 99999987654332 23445799999999999999999999999 9999998753 6999999999999999
Q ss_pred HHhcCCCccCCcEEEEEeccCCCCC
Q 014086 334 LKNTEKYELDGQALECSLAKPQADQ 358 (431)
Q Consensus 334 l~~l~~~~~~g~~l~v~~a~~~~~~ 358 (431)
+..||+..|.|+.|+|.||++....
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999999999999886543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.8e-44 Score=356.66 Aligned_cols=252 Identities=27% Similarity=0.452 Sum_probs=220.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
.+|||+|||+++|+++|+++|++||.|.+|+|+++..|++++|||||+|.+.++|.+||+.+++..|.|+.|+|.++...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999765311
Q ss_pred --------------------------------------------------------------------------------
Q 014086 182 -------------------------------------------------------------------------------- 181 (431)
Q Consensus 182 -------------------------------------------------------------------------------- 181 (431)
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence
Q ss_pred ------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHH
Q 014086 182 ------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (431)
Q Consensus 182 ------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (431)
.+|||+|||.++++++|+++|+.||. |..+.++.+ .++.++|||||.|.+.++|.+|+.
T Consensus 161 v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 161 VGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred EeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHH
Confidence 13788999999999999999999998 888888887 578899999999999999999999
Q ss_pred HhCCCCcccC--CCCCccccCCCCCCCC--------------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEe
Q 014086 244 KMTNPNFKLG--TNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVV 307 (431)
Q Consensus 244 ~~~~~~~~~~--~~~~~~~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 307 (431)
.+++..+... +..+.+.++..+.... .......+|||+||+..+|+++|+++|+.||.|.+|+|
T Consensus 238 ~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i 317 (562)
T TIGR01628 238 EMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKV 317 (562)
T ss_pred HhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEE
Confidence 9998755422 6677777765554321 11334578999999999999999999999999999999
Q ss_pred cCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 308 ~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
+.+ .++.++|||||+|.+.++|.+|+..|||..|+|++|.|.+|..+..
T Consensus 318 ~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 318 MLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred EEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 999 4556699999999999999999999999999999999999987654
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.2e-42 Score=287.26 Aligned_cols=254 Identities=22% Similarity=0.393 Sum_probs=231.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..+.|.|.=||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|-++++|.+|+..|||..+..++|+|++++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccC
Q 014086 180 AK------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLG 253 (431)
Q Consensus 180 ~~------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 253 (431)
+. ..|||++||+.++..+|.++|++||. |.-.++..+ ..+|.++|-+||.|..+..|+.|+..+|+......
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 75 47999999999999999999999999 555666666 67899999999999999999999999999887777
Q ss_pred CCCCccccCCCCCCCC-----------------------------------------------------------CCCCc
Q 014086 254 TNAPTVSWADPRNVDS-----------------------------------------------------------SGASQ 274 (431)
Q Consensus 254 ~~~~~~~~~~~~~~~~-----------------------------------------------------------~~~~~ 274 (431)
..++.|+++....... .....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 7788888876542211 00111
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
..+|||-||..++++.-|+++|.+||.|.+|+|++|..+.+++|||||.+.+-++|..||..|||..+++|.|.|.|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred C
Q 014086 355 Q 355 (431)
Q Consensus 355 ~ 355 (431)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-41 Score=279.82 Aligned_cols=227 Identities=22% Similarity=0.440 Sum_probs=192.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHH-HhCCCccCCeEeeecc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAID-KLNNTEFKGKKIRCST 177 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~-~l~~~~~~g~~i~v~~ 177 (431)
.+.+||||+||..++|++-|..||++.|.|.+++|+.+.- + | ..|.. ....+....
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~-------v--------~wa~~p~nQsk~t~~------- 60 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K-------V--------NWATAPGNQSKPTSN------- 60 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c-------c--------ccccCcccCCCCccc-------
Confidence 3468999999999999999999999999999999987611 0 0 00000 000000011
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCC
Q 014086 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (431)
Q Consensus 178 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (431)
....+||+.|...++.+.|++.|.+||+ |..+++++| ..+++++||+||.|.+..+|+.|+..|++. .++.|.+
T Consensus 61 --~hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~I 134 (321)
T KOG0148|consen 61 --QHFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTI 134 (321)
T ss_pred --cceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eecccee
Confidence 1235799999999999999999999999 999999999 799999999999999999999999999997 5789999
Q ss_pred ccccCCCCCCCC------------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeC
Q 014086 258 TVSWADPRNVDS------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFA 325 (431)
Q Consensus 258 ~~~~~~~~~~~~------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~ 325 (431)
+..|+..++... ......++|||+||+..+|++.||+.|++||.|.+||+.+++ ||+||.|.
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~ 208 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFE 208 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEec
Confidence 999998886433 334456899999999999999999999999999999999995 99999999
Q ss_pred CHHHHHHHHHhcCCCccCCcEEEEEeccCCCCCCC
Q 014086 326 ERSSAMKALKNTEKYELDGQALECSLAKPQADQKS 360 (431)
Q Consensus 326 ~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~~ 360 (431)
+.|+|.+||..+||..|.|+.++|.|.+.......
T Consensus 209 tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 209 TKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred chhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 99999999999999999999999999987665443
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.3e-38 Score=308.12 Aligned_cols=241 Identities=21% Similarity=0.276 Sum_probs=203.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh--CCCccCCeEeeecc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL--NNTEFKGKKIRCST 177 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l--~~~~~~g~~i~v~~ 177 (431)
++++|||+|||+++|+++|+++|+.||.|.+|.++++ ++||||+|.+.++|.+|++.+ ++..|.|+.|+|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3789999999999999999999999999999999864 689999999999999999864 67889999999987
Q ss_pred cccc------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHH
Q 014086 178 SQAK------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (431)
Q Consensus 178 ~~~~------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (431)
+..+ .+|+|.||+..+++++|+++|+.||. |..+.++++. .+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 6421 15899999999999999999999999 9999887651 2468999999999999
Q ss_pred HHHHHhCCCCcccCCCCCccccCCCCCCC---------------------------------------------------
Q 014086 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVD--------------------------------------------------- 268 (431)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 268 (431)
+|+..|++..+..+...+.+.|+.+....
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 99999999876544333333333211000
Q ss_pred ----------------------------------------CCCCCcccEEEEecCCC-CCCHHHHHHHHhccccEEEEEe
Q 014086 269 ----------------------------------------SSGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVV 307 (431)
Q Consensus 269 ----------------------------------------~~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i 307 (431)
.....++++|||+|||. .+|+++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 00012457999999997 6999999999999999999999
Q ss_pred cCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 308 PPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 308 ~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
++++ +|||||+|.+.++|..|+..|||..|.|++|+|.+++....
T Consensus 309 ~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 309 MKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred EeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 9874 69999999999999999999999999999999999876543
No 8
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6e-38 Score=284.77 Aligned_cols=252 Identities=25% Similarity=0.495 Sum_probs=224.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
..||||++||++++.++|.++|+.+|+|..+.++.+..++.++||+||+|.-.+++++|++.+++..|.||.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999987753
Q ss_pred c--------------------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceE
Q 014086 181 K--------------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFA 228 (431)
Q Consensus 181 ~--------------------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~ 228 (431)
+ -+|.|+|||+.+...+|..+|+.||. |..+.|.+. ..|+-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 2 36899999999999999999999999 999999865 555555999
Q ss_pred EeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCC--------------------------------------
Q 014086 229 FIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSS-------------------------------------- 270 (431)
Q Consensus 229 fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 270 (431)
||.|....+|..|+..+|+. .+.++++.|.|+-++..-..
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999986 67899999999976521110
Q ss_pred ------C------------------------------------------CCcccEEEEecCCCCCCHHHHHHHHhccccE
Q 014086 271 ------G------------------------------------------ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302 (431)
Q Consensus 271 ------~------------------------------------------~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 302 (431)
. .....+|||+|||+++|++.|...|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 0 0003799999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC-----C-CccCCcEEEEEeccCCCC
Q 014086 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-----K-YELDGQALECSLAKPQAD 357 (431)
Q Consensus 303 ~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~-----~-~~~~g~~l~v~~a~~~~~ 357 (431)
.++.|+.++.++.++|+|||.|.+..+|..||.+.. | ..+.||.|.|.+|-+...
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999999999999999999999999999999762 3 678999999999865443
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.3e-37 Score=299.98 Aligned_cols=250 Identities=22% Similarity=0.404 Sum_probs=214.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|| .|+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999999999999999999999999999999 5999999999999976
Q ss_pred ccc------------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHH
Q 014086 178 SQA------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (431)
Q Consensus 178 ~~~------------------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (431)
+.. ..+|||+|||..+++++|+++|+.||. |..+.++.+ ..++.++|||||+|.+.+.|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d-~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRD-PETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEc-CCCCccceEEEEEECCHHHHH
Confidence 532 257999999999999999999999999 999999988 667899999999999999999
Q ss_pred HHHHHhCCCCcccCCCCCccccCCCCCCC---------------------------------------------------
Q 014086 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVD--------------------------------------------------- 268 (431)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 268 (431)
.|+..|++ +.+.++.+.|.|+......
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999998 4556777777774211000
Q ss_pred --------------------C---------------CCCCcccEEEEecCCCCCC----------HHHHHHHHhccccEE
Q 014086 269 --------------------S---------------SGASQVKAVYVKNLPRNVT----------QDQLKKLFEHHGRIT 303 (431)
Q Consensus 269 --------------------~---------------~~~~~~~~l~V~nLp~~~t----------~~~L~~~F~~~G~v~ 303 (431)
. .....+++|+|.||....+ .++|++.|++||.|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 0113467899999954443 368999999999999
Q ss_pred EEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCC
Q 014086 304 KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (431)
Q Consensus 304 ~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 356 (431)
.|.|.... +.|++||+|.++++|.+|+..|||..|+|+.|.|.|.....
T Consensus 401 ~v~v~~~~----~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 401 HIYVDTKN----SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred EEEEeCCC----CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99997432 36999999999999999999999999999999999986543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.4e-37 Score=280.52 Aligned_cols=174 Identities=26% Similarity=0.463 Sum_probs=156.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++|+++|+++|+.||+|++|+|+++..+++++|||||+|.+.++|.+||+.|++..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCC
Q 014086 178 SQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP 257 (431)
Q Consensus 178 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 257 (431)
+.+...
T Consensus 184 a~p~~~-------------------------------------------------------------------------- 189 (346)
T TIGR01659 184 ARPGGE-------------------------------------------------------------------------- 189 (346)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 642100
Q ss_pred ccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhc
Q 014086 258 TVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (431)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l 337 (431)
....++|||+|||..+|+++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+||+.|
T Consensus 190 --------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 190 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred --------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 001157999999999999999999999999999999999988888999999999999999999999
Q ss_pred CCCccCC--cEEEEEeccCCCCCC
Q 014086 338 EKYELDG--QALECSLAKPQADQK 359 (431)
Q Consensus 338 ~~~~~~g--~~l~v~~a~~~~~~~ 359 (431)
|+..|.+ ++|+|.+|......+
T Consensus 256 ng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred CCCccCCCceeEEEEECCcccccc
Confidence 9998876 789999998765543
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.5e-35 Score=293.85 Aligned_cols=246 Identities=24% Similarity=0.435 Sum_probs=203.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc------------CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSI------------GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~------------G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~ 166 (431)
...++|||+|||+.+|+++|+++|..| +.|..+.+ ++.+|||||+|.+.++|..|| .|+|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 356899999999999999999999975 34555555 345899999999999999999 69999
Q ss_pred ccCCeEeeecccc-----------------------------------ccccccccCCCCCCCHHHHHHHHHhhCCCeeE
Q 014086 167 EFKGKKIRCSTSQ-----------------------------------AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG 211 (431)
Q Consensus 167 ~~~g~~i~v~~~~-----------------------------------~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~ 211 (431)
.|.|+.|+|.... ..++|||+|||..+++++|+++|+.||. |..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeE
Confidence 9999999996321 1257999999999999999999999999 999
Q ss_pred EEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCC----------------------
Q 014086 212 VELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---------------------- 269 (431)
Q Consensus 212 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 269 (431)
+.++.+ ..+|.++|||||+|.+...|..|+..|++.. +.++.+.|.++.......
T Consensus 325 ~~~~~~-~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~--~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T TIGR01642 325 FNLIKD-IATGLSKGYAFCEYKDPSVTDVAIAALNGKD--TGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSI 401 (509)
T ss_pred EEEEec-CCCCCcCeEEEEEECCHHHHHHHHHHcCCCE--ECCeEEEEEECccCCCCCCccccccccccccccccchhhh
Confidence 999988 6789999999999999999999999999864 466667776654321100
Q ss_pred --CCCCcccEEEEecCCCCC----------CHHHHHHHHhccccEEEEEecCCC---CCCCcCCEEEEEeCCHHHHHHHH
Q 014086 270 --SGASQVKAVYVKNLPRNV----------TQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 270 --~~~~~~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~rg~afV~F~~~~~A~~Al 334 (431)
....++.+|+|.||.... ..++|+++|++||.|..|.|++.. ....++|+|||+|.+.++|.+|+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 012356889999996421 236899999999999999998753 22345689999999999999999
Q ss_pred HhcCCCccCCcEEEEEeccCC
Q 014086 335 KNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 335 ~~l~~~~~~g~~l~v~~a~~~ 355 (431)
..|||..|+|+.|.|.|....
T Consensus 482 ~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 482 EGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HHcCCCEECCeEEEEEEeCHH
Confidence 999999999999999998654
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=268.25 Aligned_cols=255 Identities=21% Similarity=0.428 Sum_probs=227.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc-cCC--eEeeec
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKG--KKIRCS 176 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~-~~g--~~i~v~ 176 (431)
+.-.|||+-+|..++|.+|+.+|++||.|..|.|++|+.|+.++|||||+|.+.++|.+|+.+||+.. |-| ..|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34579999999999999999999999999999999999999999999999999999999999999876 444 678888
Q ss_pred cccc-------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCC
Q 014086 177 TSQA-------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (431)
Q Consensus 177 ~~~~-------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (431)
++.. .++|||+-|++.+++.+++++|++||. |..|.+.++ ..+.+|||+||.|.+.+.|..|++.||+..
T Consensus 113 ~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 8864 457899999999999999999999999 999999998 889999999999999999999999999863
Q ss_pred -cccCCCCCccccCCCCCCCCCCCC------------------c------------------------------------
Q 014086 250 -FKLGTNAPTVSWADPRNVDSSGAS------------------Q------------------------------------ 274 (431)
Q Consensus 250 -~~~~~~~~~~~~~~~~~~~~~~~~------------------~------------------------------------ 274 (431)
+.....++.|.|+++......... .
T Consensus 190 tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l 269 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPL 269 (510)
T ss_pred eeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCc
Confidence 445567788888886633220000 0
Q ss_pred --------------------------------------------------------------------------------
Q 014086 275 -------------------------------------------------------------------------------- 274 (431)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (431)
T Consensus 270 ~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~ 349 (510)
T KOG0144|consen 270 NATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAG 349 (510)
T ss_pred chhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccc
Confidence
Q ss_pred --------------------------------------------------------------------------ccEEEE
Q 014086 275 --------------------------------------------------------------------------VKAVYV 280 (431)
Q Consensus 275 --------------------------------------------------------------------------~~~l~V 280 (431)
...|||
T Consensus 350 ~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfi 429 (510)
T KOG0144|consen 350 GMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFI 429 (510)
T ss_pred ccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceee
Confidence 578999
Q ss_pred ecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 281 KNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 281 ~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
.+||.+.-+.+|...|..||.|...++..|+.++.+++|+||.|++..+|..||..|||..|++++|+|.+.+.+..
T Consensus 430 yhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 430 YHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876544
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=4.6e-35 Score=282.19 Aligned_cols=149 Identities=21% Similarity=0.433 Sum_probs=139.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
....++|||+|||+++++++|+++|++||.|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.||.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ccc-----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHH
Q 014086 178 SQA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (431)
Q Consensus 178 ~~~-----------------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (431)
... .++|||+||++.+++++|+++|+.||. |..+++.++ ..++.++|||||+|.+.++|..
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D-~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEec-CCCCCcCCeEEEEECCHHHHHH
Confidence 431 257999999999999999999999999 999999998 5688999999999999999999
Q ss_pred HHHHhCCC
Q 014086 241 SRQKMTNP 248 (431)
Q Consensus 241 a~~~~~~~ 248 (431)
|+..||+.
T Consensus 262 AI~amNg~ 269 (612)
T TIGR01645 262 AIASMNLF 269 (612)
T ss_pred HHHHhCCC
Confidence 99999864
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.3e-35 Score=284.65 Aligned_cols=240 Identities=18% Similarity=0.262 Sum_probs=200.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC--eEeeeccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCSTS 178 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g--~~i~v~~~ 178 (431)
..+|||+||++.+|+++|+++|+.||.|.+|.|+++.. +++|||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 45799999999999999999999999999999987542 4789999999999999999999999864 35555332
Q ss_pred c-------------------------------------------------------------------------------
Q 014086 179 Q------------------------------------------------------------------------------- 179 (431)
Q Consensus 179 ~------------------------------------------------------------------------------- 179 (431)
.
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 1
Q ss_pred ----------------------ccccccccCCCC-CCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChh
Q 014086 180 ----------------------AKYRLFIGNIPR-NWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236 (431)
Q Consensus 180 ----------------------~~~~l~v~~lp~-~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~ 236 (431)
+..+|||+||++ .+++++|+++|+.||. |..++++.+ .+|+|||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 123699999998 6999999999999999 999999886 3699999999999
Q ss_pred HHHHHHHHhCCCCcccCCCCCccccCCCCCCCC---------------------------------CCCCcccEEEEecC
Q 014086 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS---------------------------------SGASQVKAVYVKNL 283 (431)
Q Consensus 237 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~V~nL 283 (431)
+|..|+..|++. .+.++.+.|.++....... ....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999986 4467777777654321000 00134579999999
Q ss_pred CCCCCHHHHHHHHhcccc--EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcE------EEEEeccCC
Q 014086 284 PRNVTQDQLKKLFEHHGR--ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA------LECSLAKPQ 355 (431)
Q Consensus 284 p~~~t~~~L~~~F~~~G~--v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~------l~v~~a~~~ 355 (431)
|..+|+++|+++|+.||. |..|++.....+ ++|+|||+|.+.++|.+||..||++.|.++. |+|.|+++.
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~--~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNE--RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCC--cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 888988765533 3689999999999999999999999999985 999999764
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=5.3e-31 Score=243.22 Aligned_cols=241 Identities=27% Similarity=0.427 Sum_probs=214.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
..|||+ +++|+..|.++|+.+|+|.+|+++++. | +.|||||.|.++++|.+||+++|...+.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 999999999999999999999999998 6 9999999999999999999999999999999999998765
Q ss_pred c-cccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccc
Q 014086 182 Y-RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (431)
Q Consensus 182 ~-~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (431)
. .+||.||++.++...|.++|+.||. |.+|++..+ ..| ++|| ||+|.+...|.+|+..+|+. .+.+..+.+.
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~--~~g-~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg 148 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATD--ENG-SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVG 148 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEc--CCC-ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEe
Confidence 4 4899999999999999999999999 999999998 344 9999 99999999999999999986 4456666665
Q ss_pred cCCCCCCCCC----CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 261 WADPRNVDSS----GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 261 ~~~~~~~~~~----~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
....+..... ....-+.++|.|++.+++...|..+|+.+|.|..+.++.+..+. ++||+||.|.++++|..|+..
T Consensus 149 ~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~-~~~~gfv~f~~~e~a~~av~~ 227 (369)
T KOG0123|consen 149 LFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK-SKGFGFVNFENPEDAKKAVET 227 (369)
T ss_pred eccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC-CCCccceeecChhHHHHHHHh
Confidence 5554432221 23445789999999999999999999999999999999998887 589999999999999999999
Q ss_pred cCCCccCCcEEEEEeccCCC
Q 014086 337 TEKYELDGQALECSLAKPQA 356 (431)
Q Consensus 337 l~~~~~~g~~l~v~~a~~~~ 356 (431)
||+..+.+..+.|..+....
T Consensus 228 l~~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 228 LNGKIFGDKELYVGRAQKKS 247 (369)
T ss_pred ccCCcCCccceeecccccch
Confidence 99999999999998887633
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=3.8e-31 Score=244.20 Aligned_cols=251 Identities=26% Similarity=0.458 Sum_probs=218.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
+.+.|||.||+.+++..+|.++|+.||.|.+|++..+.. | ++|| ||+|.++++|.+|++.+||..+.|+.|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 344599999999999999999999999999999999865 5 9999 999999999999999999999999999996554
Q ss_pred cc--------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHh
Q 014086 180 AK--------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKM 245 (431)
Q Consensus 180 ~~--------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 245 (431)
.+ ..+++.+++...+...|..+|..+|. |..+.++.+ ..+.+++|+||.|.+.++|..|+..+
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhc
Confidence 32 46899999999999999999999999 999999998 67779999999999999999999999
Q ss_pred CCCCcccCCCCCccccCCCCCCCC--------------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCC
Q 014086 246 TNPNFKLGTNAPTVSWADPRNVDS--------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK 311 (431)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~ 311 (431)
++..+. +..+.+..+..+.... ........|||.||+..++.+.|+.+|+.||.|..++|..+.
T Consensus 229 ~~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 229 NGKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred cCCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 987554 4445555444421111 223456799999999999999999999999999999999987
Q ss_pred CCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCCCC
Q 014086 312 PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (431)
Q Consensus 312 ~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (431)
.+.. +||+||.|.+.++|.+|+..+|+..+.++.|.|.++.....+.
T Consensus 307 ~g~s-kG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 307 NGKS-KGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred CCCc-cceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 7766 8999999999999999999999999999999999998555543
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.2e-28 Score=236.16 Aligned_cols=174 Identities=21% Similarity=0.443 Sum_probs=152.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccc
Q 014086 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (431)
Q Consensus 181 ~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (431)
.++|||+|||+.+++++|+++|..||. |.+++++++ ..+++++|||||+|.+.++|..|+..|++. .+.++.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 357999999999999999999999999 999999998 778999999999999999999999999875 5677888877
Q ss_pred cCCCCCCCC-------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHH
Q 014086 261 WADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKA 333 (431)
Q Consensus 261 ~~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~A 333 (431)
+........ ......++|||+|||..+++++|+++|+.||.|.+|+|.++..++.+||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 644322111 1122357999999999999999999999999999999999998888899999999999999999
Q ss_pred HHhcCCCccCCcEEEEEeccCCCCC
Q 014086 334 LKNTEKYELDGQALECSLAKPQADQ 358 (431)
Q Consensus 334 l~~l~~~~~~g~~l~v~~a~~~~~~ 358 (431)
+..||+..|+|+.|+|.++.+....
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999999999999999865443
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=231.10 Aligned_cols=235 Identities=25% Similarity=0.381 Sum_probs=195.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
...+|.|+||||.|...+|+.+|+.||.|..|.|.+.++++.+ |||||+|....+|.+||+.+|+..|.||+|-|.|+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3689999999999999999999999999999999988775555 999999999999999999999999999999999985
Q ss_pred cc------------------------------------------------------------------------------
Q 014086 180 AK------------------------------------------------------------------------------ 181 (431)
Q Consensus 180 ~~------------------------------------------------------------------------------ 181 (431)
++
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 33
Q ss_pred ------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHH
Q 014086 182 ------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (431)
Q Consensus 182 ------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (431)
.+|||+|||+++++++|.++|+.||+ |..+.++.+ ..+++++|.|||.|.+...|..|+.
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHH
Confidence 36999999999999999999999999 999999998 8999999999999999999999999
Q ss_pred HhC---C-CCcccCCCCCccccCCCCCCCC--------------------------------------------------
Q 014086 244 KMT---N-PNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (431)
Q Consensus 244 ~~~---~-~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 269 (431)
+.. + ..+.+.++.+.+..+..+....
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 873 2 2367788888888776552211
Q ss_pred -------CCCCcccEEEEecCCCCCCHHHHHHHHhcc-----ccEE-EEEecCCCC---CCCcCCEEEEEeCCHHHHHHH
Q 014086 270 -------SGASQVKAVYVKNLPRNVTQDQLKKLFEHH-----GRIT-KVVVPPAKP---GQEKNRIGFVHFAERSSAMKA 333 (431)
Q Consensus 270 -------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~-~v~i~~~~~---~~~~rg~afV~F~~~~~A~~A 333 (431)
......++|.|+|||..++...|..+.... +.+. .|+.+.... .+.+.||+|+.|..++.|.+|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalka 512 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKA 512 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHh
Confidence 001125789999999999999999887542 2222 234433322 244579999999999999999
Q ss_pred HHhc
Q 014086 334 LKNT 337 (431)
Q Consensus 334 l~~l 337 (431)
+..+
T Consensus 513 lk~~ 516 (678)
T KOG0127|consen 513 LKVL 516 (678)
T ss_pred hhcc
Confidence 9865
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=211.56 Aligned_cols=248 Identities=20% Similarity=0.397 Sum_probs=205.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
-|+|||+.+.+.+.++.|+..|..||+|++|.+.-|+.|++.+|||||+|+-+|.|..|++.+||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999976542
Q ss_pred -----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHH
Q 014086 181 -----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQ 243 (431)
Q Consensus 181 -----------------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 243 (431)
-.++||..+.+++++.+|+.+|+.||+ |..|.+.+. ...+.++||+|++|.+..+...|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~-pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARA-PTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeecc-CCCCCccceeeEEeccccchHHHhh
Confidence 257999999999999999999999999 999999999 5677889999999999999999999
Q ss_pred HhCCCCcccCCCCCccccCCCCCCCC------CC----------------------------------------------
Q 014086 244 KMTNPNFKLGTNAPTVSWADPRNVDS------SG---------------------------------------------- 271 (431)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------------------------------------- 271 (431)
.||- |.+++..++|..+-...... +.
T Consensus 271 sMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 8883 34444444443322110000 00
Q ss_pred --------------------------------------------------------------------------------
Q 014086 272 -------------------------------------------------------------------------------- 271 (431)
Q Consensus 272 -------------------------------------------------------------------------------- 271 (431)
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence
Q ss_pred --------------CCcccEEEEecC--CCCCCH---HHHHHHHhccccEEEEEecCCCCCCCcC----CEEEEEeCCHH
Q 014086 272 --------------ASQVKAVYVKNL--PRNVTQ---DQLKKLFEHHGRITKVVVPPAKPGQEKN----RIGFVHFAERS 328 (431)
Q Consensus 272 --------------~~~~~~l~V~nL--p~~~t~---~~L~~~F~~~G~v~~v~i~~~~~~~~~r----g~afV~F~~~~ 328 (431)
...++.|.++|+ |.++++ .+|++-|++||.|.+|.|...+.+..-- ---||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 000577888987 555544 6889999999999999998877654210 13699999999
Q ss_pred HHHHHHHhcCCCccCCcEEEEEec
Q 014086 329 SAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 329 ~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
++.+|+.+|+|+.|+||++....-
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHHHhhccceecCceeehhhh
Confidence 999999999999999999876543
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=4e-28 Score=228.33 Aligned_cols=250 Identities=22% Similarity=0.334 Sum_probs=208.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
+..+.|+|+|||..+..++|..+|..||.|..|.+... --.|+|.|.++.+|.+|+..|....+...++.+.++
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc------cceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 44578999999999999999999999999999955421 124999999999999999999887766655555443
Q ss_pred ccc--------------------------------------------------------ccccccCCCCCCCHHHHHHHH
Q 014086 179 QAK--------------------------------------------------------YRLFIGNIPRNWGSEDLQKVV 202 (431)
Q Consensus 179 ~~~--------------------------------------------------------~~l~v~~lp~~~~~~~l~~~f 202 (431)
... ..||+.||++..+.+.+..+|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 210 239999999999999999999
Q ss_pred HhhCCCeeEEEEeecCCC--CCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCC-----CCCCCcc
Q 014086 203 SEVGPGVTGVELVKDMKN--SSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-----SSGASQV 275 (431)
Q Consensus 203 ~~~g~~i~~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 275 (431)
...|. |.++.|...... --.+.|||||+|.+.++|+.|++.|+++ .+.++.+.+.++...... .......
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCcccccccccccccccc
Confidence 99999 888877655322 3457799999999999999999999976 667888888877722211 1223336
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
+.|.|+|||+.++-.+|+.+|..||.|..|+|+........||||||+|-++.+|.+|+.+|..+.+.||+|.+.||...
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 89999999999999999999999999999999998666677999999999999999999999999999999999999865
Q ss_pred CC
Q 014086 356 AD 357 (431)
Q Consensus 356 ~~ 357 (431)
..
T Consensus 694 ~~ 695 (725)
T KOG0110|consen 694 NT 695 (725)
T ss_pred hH
Confidence 44
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=217.97 Aligned_cols=173 Identities=24% Similarity=0.448 Sum_probs=153.3
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCc-ccCCCCCccc
Q 014086 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF-KLGTNAPTVS 260 (431)
Q Consensus 182 ~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~-~~~~~~~~~~ 260 (431)
-++||+.+|+.|++.+|+.+|++||. |.+|.+++| +.++.++|||||.|.++++|.+|+.++++... .....++.|.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 37999999999999999999999999 999999999 88999999999999999999999999987643 4455778888
Q ss_pred cCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC
Q 014086 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (431)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~ 340 (431)
+++...... ...++|||+-|+..+|+.+|+.+|++||.|++|+|+++.++.+ ||||||+|.+.+.|..||+.|||.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~s-RGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLS-RGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccc-cceeEEEEehHHHHHHHHHhhccc
Confidence 887765442 3347999999999999999999999999999999999987766 999999999999999999999984
Q ss_pred -ccCC--cEEEEEeccCCCCCCC
Q 014086 341 -ELDG--QALECSLAKPQADQKS 360 (431)
Q Consensus 341 -~~~g--~~l~v~~a~~~~~~~~ 360 (431)
++.| .+|.|+||.++..+..
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred eeeccCCCceEEEecccCCCchH
Confidence 4555 6899999998877654
No 22
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=2.7e-27 Score=186.38 Aligned_cols=173 Identities=22% Similarity=0.337 Sum_probs=154.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
...||||+||+..++++-|.++|-+.|+|.+++|.+++.+...+|||||+|.+.++|+-|++-||...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999888999999997654
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
...+ .
T Consensus 88 ~~~~-----------------------------------------------------------------n---------- 92 (203)
T KOG0131|consen 88 AHQK-----------------------------------------------------------------N---------- 92 (203)
T ss_pred cccc-----------------------------------------------------------------c----------
Confidence 1100 0
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEE-EEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
...+.+|||+||.+.+++..|.+.|+.||.+.. -.|+++..++.++|||||.|.+.+.+.+|+..+|
T Consensus 93 ------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 93 ------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred ------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 000158999999999999999999999999776 4788999989999999999999999999999999
Q ss_pred CCccCCcEEEEEeccCCCCCC
Q 014086 339 KYELDGQALECSLAKPQADQK 359 (431)
Q Consensus 339 ~~~~~g~~l~v~~a~~~~~~~ 359 (431)
|..+..+++.|.++.......
T Consensus 161 gq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cchhcCCceEEEEEEecCCCc
Confidence 999999999999998666554
No 23
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=6.1e-26 Score=201.46 Aligned_cols=144 Identities=30% Similarity=0.514 Sum_probs=129.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+.+||.|||+++.+++|+++|. +.|.|+.|.++.|. +|+++|||.|+|+++|.+++|++.||...+.||+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 446699999999999999999995 57999999999985 5999999999999999999999999999999999999654
Q ss_pred ccc-----------------------------------------------------------------------------
Q 014086 179 QAK----------------------------------------------------------------------------- 181 (431)
Q Consensus 179 ~~~----------------------------------------------------------------------------- 181 (431)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 321
Q ss_pred --------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCC
Q 014086 182 --------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (431)
Q Consensus 182 --------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (431)
.++||.||...+....|++.|.-.|. ++.+.+-.+ ..|.++|++.++|.+.-.|.+|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 25789999999999999999999999 999988887 5678999999999999999999998874
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=6.4e-26 Score=214.57 Aligned_cols=170 Identities=22% Similarity=0.446 Sum_probs=153.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
++.+|||+|||..+++++|+++|+.||+ |..|+++.+ ..+++++|||||+|.+.++|..|+..|++. .+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEE
Confidence 3578999999999999999999999999 999999999 678999999999999999999999999984 667889999
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
.|+.+.... ....+|||+|||..+++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|..|+..|||
T Consensus 78 ~~a~~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 78 SYARPSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred Eeecccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 988765432 2346899999999999999999999999999999999887778899999999999999999999999
Q ss_pred CccCC--cEEEEEeccCCCC
Q 014086 340 YELDG--QALECSLAKPQAD 357 (431)
Q Consensus 340 ~~~~g--~~l~v~~a~~~~~ 357 (431)
..+.| ++|.|.|+.....
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CccCCCceeEEEEECCCCCc
Confidence 99887 6789999876553
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=2.6e-27 Score=217.12 Aligned_cols=246 Identities=22% Similarity=0.376 Sum_probs=206.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
+..+|||+--|+..++.-+|.+||+.+|.|..|+|+.++.+++++|.|||+|.+.+.+..|| .|.|..+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999 79999999999999775
Q ss_pred ccc--------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHH
Q 014086 179 QAK--------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCA 238 (431)
Q Consensus 179 ~~~--------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 238 (431)
... ..|+|+||.+++++..|+.+|++||. |..+.+.++ ..+|.++||+||+|.+.++|
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHH
Confidence 432 23899999999999999999999999 999999998 66999999999999999999
Q ss_pred HHHHHHhCCCCcccCCCCCccccCCCCCCCC-------------------------------------------------
Q 014086 239 EYSRQKMTNPNFKLGTNAPTVSWADPRNVDS------------------------------------------------- 269 (431)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 269 (431)
.+|+..||+ +.+.++.+.|..-..+....
T Consensus 334 r~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 334 RKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 999999998 56666655543221110000
Q ss_pred -------------------CCC-------CcccEEEEecC--CCCCC--------HHHHHHHHhccccEEEEEecCCCCC
Q 014086 270 -------------------SGA-------SQVKAVYVKNL--PRNVT--------QDQLKKLFEHHGRITKVVVPPAKPG 313 (431)
Q Consensus 270 -------------------~~~-------~~~~~l~V~nL--p~~~t--------~~~L~~~F~~~G~v~~v~i~~~~~~ 313 (431)
... .++.|+.+.|+ |...| .+++.+-+.+||.|..|.+-++.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-- 489 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-- 489 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC--
Confidence 000 23456666666 22222 26788889999999999997764
Q ss_pred CCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 314 ~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
-|+.||.|.+.+.|..|+.+|||.+|.|+.|.+.|-..
T Consensus 490 ---~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 490 ---AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred ---CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 48999999999999999999999999999999998754
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6e-27 Score=195.61 Aligned_cols=152 Identities=26% Similarity=0.552 Sum_probs=142.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
-.|||+.|...++.++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|+|..|.+|.|+..++..+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred ----------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHH
Q 014086 182 ----------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (431)
Q Consensus 182 ----------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (431)
+++|++|++.-++++.+++.|+.||+ |.++++..+ +||+||.|.+.++|.
T Consensus 143 p~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 143 PSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAAA 214 (321)
T ss_pred ccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhHH
Confidence 57999999999999999999999999 999999999 999999999999999
Q ss_pred HHHHHhCCCCcccCCCCCccccCC
Q 014086 240 YSRQKMTNPNFKLGTNAPTVSWAD 263 (431)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~ 263 (431)
.|+..+|+. .+++..+++.|-.
T Consensus 215 hAIv~mNnt--ei~G~~VkCsWGK 236 (321)
T KOG0148|consen 215 HAIVQMNNT--EIGGQLVRCSWGK 236 (321)
T ss_pred HHHHHhcCc--eeCceEEEEeccc
Confidence 999999987 4567777777654
No 27
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=1.2e-24 Score=197.01 Aligned_cols=247 Identities=19% Similarity=0.282 Sum_probs=186.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
......|.+++|||+||+++|.+||+.| .|.++.+.+ .+|+..|-|||+|.+.+++.+||+ .+...+..|.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 4556789999999999999999999999 477765554 569999999999999999999995 788999999999966
Q ss_pred ccc-----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHH
Q 014086 178 SQA-----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (431)
Q Consensus 178 ~~~-----------------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (431)
+.. ...|.+++||+.+++++|.++|+..-.....+.++.+ ..+++.+-|||.|.+.+.|++
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d--~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD--QRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc--CCCCcccceEEEecCHHHHHH
Confidence 532 2468899999999999999999988763333555555 777899999999999999999
Q ss_pred HHHHhCCCC---c--------------c-----cCC-----------CCCccccCCCCC---------------------
Q 014086 241 SRQKMTNPN---F--------------K-----LGT-----------NAPTVSWADPRN--------------------- 266 (431)
Q Consensus 241 a~~~~~~~~---~--------------~-----~~~-----------~~~~~~~~~~~~--------------------- 266 (431)
|+....... + . ..+ +... .+.....
T Consensus 161 Al~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~-d~~~~~~~~~~~~r~g~~~~g~~g~~~~ 239 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGY-DYGQGRDPGRNATRYGAGGEGYYGFSRY 239 (510)
T ss_pred HHHHHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCcccc-ccccccCCCccccccccccCCccccccC
Confidence 987765210 0 0 000 0000 0000000
Q ss_pred ---CC--------------------C----------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCC
Q 014086 267 ---VD--------------------S----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG 313 (431)
Q Consensus 267 ---~~--------------------~----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~ 313 (431)
.. . ........++.++||+..+..+|..+|+..-.+ .|.|-...++
T Consensus 240 ~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dG 318 (510)
T KOG4211|consen 240 PSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDG 318 (510)
T ss_pred ccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCC
Confidence 00 0 000113788999999999999999999986443 6777666666
Q ss_pred CCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 314 QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 314 ~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+. .|-|+|+|.|.++|..|+.. ++..+..+.|.+.+...
T Consensus 319 r~-TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 319 RA-TGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGA 357 (510)
T ss_pred cc-CCcceeecccchhhHhhhcc-CCcccCcceeeecccCC
Confidence 65 68999999999999999864 77788888888877643
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=6.8e-26 Score=188.08 Aligned_cols=172 Identities=24% Similarity=0.466 Sum_probs=157.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
..+..|.|.-||..+|+++++.+|...|+ |++|++++| +.+|.+-||+||.|....+|++|+..+|+ +++..+.+.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 45668999999999999999999999999 999999999 89999999999999999999999999997 478899999
Q ss_pred cccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
|.++.|.... .....|||.+||..+|..+|.++|++||.|..-+|+.|..++.+||.|||.|.-..+|..||..||
T Consensus 115 VSyARPSs~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN 190 (360)
T KOG0145|consen 115 VSYARPSSDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN 190 (360)
T ss_pred EEeccCChhh----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhcc
Confidence 9999887643 344789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCC--cEEEEEeccCCCCC
Q 014086 339 KYELDG--QALECSLAKPQADQ 358 (431)
Q Consensus 339 ~~~~~g--~~l~v~~a~~~~~~ 358 (431)
|..-.| -+|.|+||......
T Consensus 191 G~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 191 GQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCCCCCeEEEecCCcccc
Confidence 988776 47999999876543
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=6.4e-25 Score=214.85 Aligned_cols=171 Identities=23% Similarity=0.386 Sum_probs=147.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
..++|||+|||..+++++|+++|+.+|. |..|.++.+ ..++.++|||||+|.+.++|.+|+. +++. .+.++.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g~--~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTGQ--MLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCCC--EECCeeeEE
Confidence 4568999999999999999999999998 999999998 7789999999999999999999996 5654 445666666
Q ss_pred ccCCCCCCCC--------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHH
Q 014086 260 SWADPRNVDS--------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (431)
Q Consensus 260 ~~~~~~~~~~--------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~ 331 (431)
.+........ ......++|||+|||..+|+++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 5543221110 11223589999999999999999999999999999999999988888999999999999999
Q ss_pred HHHHhcCCCccCCcEEEEEeccCC
Q 014086 332 KALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 332 ~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
+|+..|||..|.|++|.|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 30
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.92 E-value=2.4e-24 Score=191.68 Aligned_cols=178 Identities=24% Similarity=0.468 Sum_probs=154.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
+.++|||++|+|+++++.|+.+|.+||.|..|.+++++.+++++||+||+|.+++...++| ....+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 6799999999999999999999999999999999999999999999999999999999999 456778999999887766
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
++..-- ..
T Consensus 84 ~r~~~~----------------------------------~~-------------------------------------- 91 (311)
T KOG4205|consen 84 SREDQT----------------------------------KV-------------------------------------- 91 (311)
T ss_pred Cccccc----------------------------------cc--------------------------------------
Confidence 432100 00
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
.....+++|||++||.++++++|++.|.+||.|..+.++.|..+..+|||+||.|.+.+++.+++. ..-
T Consensus 92 ----------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f 160 (311)
T KOG4205|consen 92 ----------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKF 160 (311)
T ss_pred ----------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cce
Confidence 000123799999999999999999999999999999999999999999999999999999999875 567
Q ss_pred CccCCcEEEEEeccCCCCCCCC
Q 014086 340 YELDGQALECSLAKPQADQKSA 361 (431)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~~~~ 361 (431)
+.|+|+.+.|..|.|+......
T Consensus 161 ~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 161 HDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeecCceeeEeeccchhhcccc
Confidence 8899999999999988776544
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=2.7e-24 Score=181.60 Aligned_cols=154 Identities=25% Similarity=0.483 Sum_probs=138.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
..|||+|||..+++.+|+.+|.+||+|..|.|+++ |+||..++...|..|+..||+-.|+|..|.|+.+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999854 8999999999999999999999999999999866533
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcccc
Q 014086 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (431)
Q Consensus 182 ~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (431)
.+
T Consensus 75 sk------------------------------------------------------------------------------ 76 (346)
T KOG0109|consen 75 SK------------------------------------------------------------------------------ 76 (346)
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred CCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCc
Q 014086 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (431)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~ 341 (431)
.+++|+|+||.+.++..+|+..|.+||.|.++.|++ +|+||.|...++|..|++.|||+.
T Consensus 77 ------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 77 ------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred ------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 126899999999999999999999999999999986 589999999999999999999999
Q ss_pred cCCcEEEEEeccCCCCCCCC
Q 014086 342 LDGQALECSLAKPQADQKSA 361 (431)
Q Consensus 342 ~~g~~l~v~~a~~~~~~~~~ 361 (431)
|.|++++|.++...-....+
T Consensus 137 ~~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred cccceeeeeeeccccccCCC
Confidence 99999999998765544433
No 32
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=1.1e-23 Score=203.60 Aligned_cols=190 Identities=20% Similarity=0.333 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhCCCccCCeEeeeccc-----------cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCC
Q 014086 153 VELASKAIDKLNNTEFKGKKIRCSTS-----------QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNS 221 (431)
Q Consensus 153 ~e~a~~al~~l~~~~~~g~~i~v~~~-----------~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~ 221 (431)
.++|.+||..+++-.+........+. ...++|||+|||+++++++|+++|+.+|. |..++|+++ .+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~s 95 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--FS 95 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--CC
Confidence 57888888877776654333332222 12368999999999999999999999999 999999999 78
Q ss_pred CCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhcccc
Q 014086 222 SNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGR 301 (431)
Q Consensus 222 ~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~ 301 (431)
++++|||||+|.+.++|..|+..|++..+. .++.+.+.++. ..++|||+|||..+|+++|++.|++++.
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~V~~S~----------~~~rLFVgNLP~~~TeeeL~eeFskv~e 164 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLGVCISV----------DNCRLFVGGIPKNKKREEILEEFSKVTE 164 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCeec-CCccccccccc----------cCceeEeecCCcchhhHHHHHHhhcccC
Confidence 999999999999999999999999986542 34445554432 2378999999999999999999999864
Q ss_pred -EEEEEe-cCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC--CccCCcEEEEEeccCCC
Q 014086 302 -ITKVVV-PPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECSLAKPQA 356 (431)
Q Consensus 302 -v~~v~i-~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~--~~~~g~~l~v~~a~~~~ 356 (431)
+..+.+ ........++|||||+|.++++|..|++.|+. ..+.|+.|.|.|+.+..
T Consensus 165 gvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 165 GVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 444444 33334456689999999999999999998864 45789999999998753
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.4e-23 Score=187.49 Aligned_cols=189 Identities=20% Similarity=0.358 Sum_probs=155.3
Q ss_pred CHHHHHHHHHHhCCCccCCeEeeeccccc----------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEe
Q 014086 152 NVELASKAIDKLNNTEFKGKKIRCSTSQA----------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELV 215 (431)
Q Consensus 152 ~~e~a~~al~~l~~~~~~g~~i~v~~~~~----------------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~ 215 (431)
+.++|.++|..-.+ ..|.|...+. .+.+||+.||.++.+++|..+|.+.|+ |.+++++
T Consensus 43 ~~eaal~al~E~tg-----y~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elRLM 116 (506)
T KOG0117|consen 43 SEEAALKALLERTG-----YTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELRLM 116 (506)
T ss_pred cHHHHHHHHHHhcC-----ceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEEEe
Confidence 36778888754333 3444433322 257999999999999999999999999 9999999
Q ss_pred ecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHH
Q 014086 216 KDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKL 295 (431)
Q Consensus 216 ~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 295 (431)
++ ..+|.++|||||.|.+.+.|+.|++.+|+..+. .++.+.|..+.. .++|||+|||.++++++|++.
T Consensus 117 mD-~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Sva----------n~RLFiG~IPK~k~keeIlee 184 (506)
T KOG0117|consen 117 MD-PFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVA----------NCRLFIGNIPKTKKKEEILEE 184 (506)
T ss_pred ec-ccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeee----------cceeEeccCCccccHHHHHHH
Confidence 99 889999999999999999999999999998766 455566554433 379999999999999999999
Q ss_pred Hhcccc-EEEEEecCCCC-CCCcCCEEEEEeCCHHHHHHHHHhcC--CCccCCcEEEEEeccCCCCC
Q 014086 296 FEHHGR-ITKVVVPPAKP-GQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQADQ 358 (431)
Q Consensus 296 F~~~G~-v~~v~i~~~~~-~~~~rg~afV~F~~~~~A~~Al~~l~--~~~~~g~~l~v~~a~~~~~~ 358 (431)
|++.++ |+.|.+..... ..++||||||+|.++..|..|.++|- ...+-|+.+.|.||.+....
T Consensus 185 ~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 185 MKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 999986 77777766553 45679999999999999999998875 34567999999999987654
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.91 E-value=6.7e-24 Score=212.36 Aligned_cols=166 Identities=23% Similarity=0.414 Sum_probs=145.9
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccC
Q 014086 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262 (431)
Q Consensus 183 ~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 262 (431)
+|||+|||.++++++|+++|+.+|. |..|++.++ ..+++++|||||.|.+.++|.+|+..++.. .+.++.+.+.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~-v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP-VLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecc
Confidence 6899999999999999999999999 999999999 778999999999999999999999999875 356788888887
Q ss_pred CCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 014086 263 DPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL 342 (431)
Q Consensus 263 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~ 342 (431)
...... ......+|||+|||.++++++|+++|+.||.|..|+|..+..+. ++|||||+|.+.++|.+|+..+||..+
T Consensus 78 ~~~~~~--~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~-skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 78 QRDPSL--RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGK-SRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred cccccc--cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCC-cccEEEEEECCHHHHHHHHHHhcccEe
Confidence 543221 12234689999999999999999999999999999999886444 589999999999999999999999999
Q ss_pred CCcEEEEEeccCC
Q 014086 343 DGQALECSLAKPQ 355 (431)
Q Consensus 343 ~g~~l~v~~a~~~ 355 (431)
.|+.|.|......
T Consensus 155 ~~~~i~v~~~~~~ 167 (562)
T TIGR01628 155 NDKEVYVGRFIKK 167 (562)
T ss_pred cCceEEEeccccc
Confidence 9999999765443
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=2.6e-23 Score=173.41 Aligned_cols=262 Identities=18% Similarity=0.272 Sum_probs=169.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc-cCC--eEe
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKG--KKI 173 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~-~~g--~~i 173 (431)
.+-+.++|||+-|...-+|+|++.+|..||.|.+|.+.+..+ |.+||||||+|.+..+|..||..|||+. +-| ..|
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 344678999999999999999999999999999999999876 9999999999999999999999999976 334 568
Q ss_pred eecccccccc---------------------------------------ccc----cCCCCCCCHH----HHHHHHHhhC
Q 014086 174 RCSTSQAKYR---------------------------------------LFI----GNIPRNWGSE----DLQKVVSEVG 206 (431)
Q Consensus 174 ~v~~~~~~~~---------------------------------------l~v----~~lp~~~~~~----~l~~~f~~~g 206 (431)
.|+++...+. +.- ..|.+-++.. .+...++..|
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 8888765420 000 1111111110 1111122111
Q ss_pred CC---eeEEEEeecCC------------CCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCC--------------
Q 014086 207 PG---VTGVELVKDMK------------NSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAP-------------- 257 (431)
Q Consensus 207 ~~---i~~~~~~~~~~------------~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~-------------- 257 (431)
-. |....-...+. .-+.+.--+...+.+..-|..++-...-..+.-....+
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence 10 00000000000 00000001112222222222222211111110000000
Q ss_pred -----------ccccCCCCCC---CCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEE
Q 014086 258 -----------TVSWADPRNV---DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVH 323 (431)
Q Consensus 258 -----------~~~~~~~~~~---~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~ 323 (431)
.-.+..+... ........++|||..||....+.+|.++|-.||.|++.++..|+.+..+|+||||.
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEe
Confidence 0000000000 00223446899999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCCCC
Q 014086 324 FAERSSAMKALKNTEKYELDGQALECSLAKPQADQK 359 (431)
Q Consensus 324 F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (431)
|.++.+|+.||..|||..|+-++|+|.+.+|+...+
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999999999999999999999887654
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=2e-22 Score=200.02 Aligned_cols=168 Identities=17% Similarity=0.278 Sum_probs=133.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhC-----------CCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCC
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVG-----------PGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g-----------~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (431)
...++|||+|||+.+++++|.++|..++ ..|..+.+ ...++||||+|.+.+.|..|+ .|++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 3457899999999999999999999862 22333333 345899999999999999999 4776
Q ss_pred CCcccCCCCCccccCCCCCC-------------------------CCCCCCcccEEEEecCCCCCCHHHHHHHHhccccE
Q 014086 248 PNFKLGTNAPTVSWADPRNV-------------------------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRI 302 (431)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v 302 (431)
. .+.+..+.+.+...... ........++|||+|||+.+|+++|+++|+.||.|
T Consensus 245 ~--~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 245 I--IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred e--EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 4 34445555543211100 00012235799999999999999999999999999
Q ss_pred EEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCC
Q 014086 303 TKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (431)
Q Consensus 303 ~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 356 (431)
..+.|+.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++....
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999998888889999999999999999999999999999999999997543
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=191.89 Aligned_cols=223 Identities=27% Similarity=0.386 Sum_probs=178.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
-.++.+|||+|||+.+++++|+.+| |||.|..++.|.+|...+++..+.||-|+|..
T Consensus 224 i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp 280 (725)
T KOG0110|consen 224 ISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLP 280 (725)
T ss_pred HHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecC
Confidence 3467899999999999999999998 89999999999999999999999999999855
Q ss_pred cccc----------------------------------------------------------------------------
Q 014086 178 SQAK---------------------------------------------------------------------------- 181 (431)
Q Consensus 178 ~~~~---------------------------------------------------------------------------- 181 (431)
...+
T Consensus 281 ~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~ 360 (725)
T KOG0110|consen 281 SKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRV 360 (725)
T ss_pred cchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhh
Confidence 4321
Q ss_pred -------------------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChh
Q 014086 182 -------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHK 236 (431)
Q Consensus 182 -------------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~ 236 (431)
..++++|||..+..+.|..+|..||+ |..+.+.. ...-++|.|.+..
T Consensus 361 ~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp~-------~G~~aiv~fl~p~ 432 (725)
T KOG0110|consen 361 VQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLPP-------GGTGAIVEFLNPL 432 (725)
T ss_pred chhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecCc-------ccceeeeeecCcc
Confidence 24789999999999999999999999 88774431 1334899999999
Q ss_pred HHHHHHHHhCCCCcccCCCCCccccCCCCCCC-------C---------------------------------------C
Q 014086 237 CAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD-------S---------------------------------------S 270 (431)
Q Consensus 237 ~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------------------------------------~ 270 (431)
+|..|...|....+. ...+.+.|++..... . .
T Consensus 433 eAr~Afrklaysr~k--~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~ 510 (725)
T KOG0110|consen 433 EARKAFRKLAYSRFK--SAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAE 510 (725)
T ss_pred chHHHHHHhchhhhc--cCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhh
Confidence 999999998865332 222222222211000 0 0
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCC---CcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQ---EKNRIGFVHFAERSSAMKALKNTEKYELDGQAL 347 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~---~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l 347 (431)
.....++|||.||++.+|.++|...|...|.|..|.|...++.. .|.|||||+|.+.++|++|++.|+|+.|+|+.|
T Consensus 511 ~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l 590 (725)
T KOG0110|consen 511 DEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKL 590 (725)
T ss_pred ccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceE
Confidence 00112349999999999999999999999999999888766442 356999999999999999999999999999999
Q ss_pred EEEecc
Q 014086 348 ECSLAK 353 (431)
Q Consensus 348 ~v~~a~ 353 (431)
.|.++.
T Consensus 591 ~lk~S~ 596 (725)
T KOG0110|consen 591 ELKISE 596 (725)
T ss_pred EEEecc
Confidence 999998
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1e-20 Score=164.81 Aligned_cols=169 Identities=21% Similarity=0.450 Sum_probs=150.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcccc
Q 014086 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (431)
Q Consensus 182 ~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (431)
+++||+.+.+.+.++.|+..|.+||+ |.++.+.+| ..+++++||+||+|+-.+.|..|+..||+. .++++.+.|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWD-p~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeecccc-cccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 57899999999999999999999999 999999999 789999999999999999999999999986 67888888874
Q ss_pred CCCCCCCC-------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHH
Q 014086 262 ADPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 262 ~~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al 334 (431)
...-.... .....-.+|||..+..+++++||+..|+.||+|.+|.+.+...++..||||||+|.+..+-..|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 33322211 11223579999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccCCcEEEEEeccC
Q 014086 335 KNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 335 ~~l~~~~~~g~~l~v~~a~~ 354 (431)
..||-+.++|..|+|-.+-.
T Consensus 270 asMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hhcchhhcccceEecccccC
Confidence 99999999999999977643
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=4.8e-20 Score=163.01 Aligned_cols=242 Identities=22% Similarity=0.292 Sum_probs=185.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCC--CccCCeEeeec
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN--TEFKGKKIRCS 176 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~--~~~~g~~i~v~ 176 (431)
..++.|.+||||+++++.+|-.++..||.|..+.+.+. +..||++|.+.++|...+..... -.+.|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 36889999999999999999999999999999998774 33799999999999884422221 22556666665
Q ss_pred ccccc----------------------------------------------ccccccCCCCCCCHHHHHHHHHhhCCCee
Q 014086 177 TSQAK----------------------------------------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVT 210 (431)
Q Consensus 177 ~~~~~----------------------------------------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~ 210 (431)
++... -+++|.++-..++-+-|..+|++||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 54211 13577888889999999999999999 55
Q ss_pred EEE-EeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCC----------CC-------CCC--
Q 014086 211 GVE-LVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPR----------NV-------DSS-- 270 (431)
Q Consensus 211 ~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------~~~-- 270 (431)
.+. +.++ ..--|.|+|.....|..|...|.+..+.-+...+++.++.-. .. +..
T Consensus 179 KIiTF~Kn------n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFTKN------NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEecc------cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 443 3332 233488999999999999999999877655555555443211 00 000
Q ss_pred --------------------------------------CCC--cccEEEEecCC-CCCCHHHHHHHHhccccEEEEEecC
Q 014086 271 --------------------------------------GAS--QVKAVYVKNLP-RNVTQDQLKKLFEHHGRITKVVVPP 309 (431)
Q Consensus 271 --------------------------------------~~~--~~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~i~~ 309 (431)
... ....|.|.||- ..+|.+.|..+|+-||.|.+|+|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 000 13678888884 6799999999999999999999999
Q ss_pred CCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCCC
Q 014086 310 AKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (431)
Q Consensus 310 ~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 358 (431)
++ +--|+|+|.+...|.-|++.|+|..+.|++|+|.+++...-.
T Consensus 333 nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 333 NK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred cC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 87 346999999999999999999999999999999999865543
No 40
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=2.2e-19 Score=148.03 Aligned_cols=207 Identities=19% Similarity=0.349 Sum_probs=149.8
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 101 GSEVYIGGIPHDASEHDLRD----FCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
..||||.||+..+..++|+. +|++||.|.+|...+. .+.+|-|||.|.+.+.|..|+..|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999988 9999999999998765 6789999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCC
Q 014086 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (431)
Q Consensus 177 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (431)
++..+.++...--+ .. ..-.......++.... . -...++.........
T Consensus 86 yA~s~sdii~~~~~-~~---------v~~~~k~~~~~~~~~~-~---------------------~~~~ng~~~~~~~~~ 133 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPG-TF---------VEKEKKINGEILARIK-Q---------------------PLDTNGHFYNMNRMN 133 (221)
T ss_pred cccCccchhhccCc-ee---------ccccCccccccccccC-C---------------------ccccccccccccccc
Confidence 99987665433111 00 0000000000000000 0 000011000000000
Q ss_pred CccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 257 PTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
+. +.. ......+...||+.|||..++.+.|..+|.+|.-...|+++... ++.|||+|.+...|..|...
T Consensus 134 ~p-----~p~-~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 134 LP-----PPF-LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred CC-----CCc-cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhh
Confidence 00 000 12334556899999999999999999999999999999998876 68999999999999999999
Q ss_pred cCCCccC-CcEEEEEecc
Q 014086 337 TEKYELD-GQALECSLAK 353 (431)
Q Consensus 337 l~~~~~~-g~~l~v~~a~ 353 (431)
+.+..|. ...+.|.+++
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9998887 7888888875
No 41
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=4.3e-19 Score=155.67 Aligned_cols=254 Identities=16% Similarity=0.218 Sum_probs=190.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
..++..|..++|||..++.+|..||+......-.+.+.....|+..|.+.|.|.+.+.-+.|++ .+...+.+|.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeec
Confidence 3356778999999999999999999876433333334444458889999999999999999995 688889999999976
Q ss_pred cccc----------------------ccccccCCCCCCCHHHHHHHHHhhCC---CeeEEEEeecCCCCCCCcceEEeec
Q 014086 178 SQAK----------------------YRLFIGNIPRNWGSEDLQKVVSEVGP---GVTGVELVKDMKNSSNNRGFAFIEY 232 (431)
Q Consensus 178 ~~~~----------------------~~l~v~~lp~~~~~~~l~~~f~~~g~---~i~~~~~~~~~~~~~~~~g~~fv~f 232 (431)
+... -.+.+++||++++..++..+|....+ ....+-++. +.+|+.+|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEe
Confidence 6532 24677999999999999999975433 133444443 47899999999999
Q ss_pred CChhHHHHHHHHhCCCCcccCCCCCccccC----------------------CCC----CCCC-CCCCcccEEEEecCCC
Q 014086 233 HNHKCAEYSRQKMTNPNFKLGTNAPTVSWA----------------------DPR----NVDS-SGASQVKAVYVKNLPR 285 (431)
Q Consensus 233 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~----------------------~~~----~~~~-~~~~~~~~l~V~nLp~ 285 (431)
..+.+|..|+.+.... ++.+-+.+-.+ .+- .... .......+|.+++||+
T Consensus 214 a~ee~aq~aL~khrq~---iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQN---IGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred cCHHHHHHHHHHHHHH---HhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 9999999998776531 11111100000 000 0000 1122257999999999
Q ss_pred CCCHHHHHHHHhcccc-EEE--EEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCCC
Q 014086 286 NVTQDQLKKLFEHHGR-ITK--VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQADQ 358 (431)
Q Consensus 286 ~~t~~~L~~~F~~~G~-v~~--v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~~ 358 (431)
..+.++|.+||..|-. |.. |+++.+.+++. .|-|||+|.+.++|..|....|++...+|.|.|..++.....
T Consensus 291 ~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrP-SGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 291 EATVEDILDFLGDFATDIRFQGVHMVLNGQGRP-SGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELN 365 (508)
T ss_pred hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCc-ChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHH
Confidence 9999999999999864 444 78888877766 699999999999999999998888888999999988765443
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.83 E-value=2e-19 Score=144.87 Aligned_cols=83 Identities=19% Similarity=0.397 Sum_probs=78.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+++|||+|||+.+|+++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|+..||+..|.|+.|+|.++.+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 47999999999999999999999999999999999999988999999999999999999999999999999999999975
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 114 ~~~ 116 (144)
T PLN03134 114 RPS 116 (144)
T ss_pred CCC
Confidence 433
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.7e-18 Score=136.91 Aligned_cols=173 Identities=19% Similarity=0.313 Sum_probs=132.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+++|||+|||.++.+.+|.++|.+||.|..|.|... -...+||||+|+++.+|+.||..-+|-.+.|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999998644 345789999999999999999999999999999999987
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
...+.-.-. -| ...+..++
T Consensus 81 rggr~s~~~-----------------~G------------~y~gggrg-------------------------------- 99 (241)
T KOG0105|consen 81 RGGRSSSDR-----------------RG------------SYSGGGRG-------------------------------- 99 (241)
T ss_pred cCCCccccc-----------------cc------------ccCCCCCC--------------------------------
Confidence 643210000 00 00001100
Q ss_pred cccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
.+...............+|.|.+||.+.+|++|++.....|.|....+.++ |++.|+|...++.+-|+..|.
T Consensus 100 -Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 -GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred -CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 000000000011122378999999999999999999999999999999887 689999999999999999998
Q ss_pred CCccC
Q 014086 339 KYELD 343 (431)
Q Consensus 339 ~~~~~ 343 (431)
...+.
T Consensus 172 ~~~~~ 176 (241)
T KOG0105|consen 172 DQKFR 176 (241)
T ss_pred ccccc
Confidence 76664
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=2e-17 Score=143.80 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=145.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
+.-.+.|||.|||.++|.+++.++|++||.|. .|+|.++.. |..+|-|.+.|-..+++..|+..|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 55667899999999999999999999999886 588999866 999999999999999999999999999999
Q ss_pred CeEeeeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCC
Q 014086 170 GKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (431)
Q Consensus 170 g~~i~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (431)
|+.|+|..|.= ..-|. ...+++.++-+ .. .+-+..+....
T Consensus 210 g~~~rVerAkf----------------------q~Kge----------~~~~~k~k~k~----~~----~kk~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAKF----------------------QMKGE----------YDASKKEKGKC----KD----KKKLKKQQQKL 249 (382)
T ss_pred CcEEEEehhhh----------------------hhccC----------cCccccccccc----cc----HHHHHHHHHhh
Confidence 99999987752 11111 00001100000 00 00011111110
Q ss_pred cccCCCCCccccCCCCCCCCCCCCcccEEEEecCCC----CCC-------HHHHHHHHhccccEEEEEecCCCCCCCcCC
Q 014086 250 FKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPR----NVT-------QDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318 (431)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg 318 (431)
..|.... ...+.....++|.++|+=. ..+ .++|++-+++||.|.+|.|.-.. +.|
T Consensus 250 ---------~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdG 315 (382)
T KOG1548|consen 250 ---------LDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDG 315 (382)
T ss_pred ---------cccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCc
Confidence 1111111 1222333447899999832 223 36777889999999999887443 358
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCC
Q 014086 319 IGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQA 356 (431)
Q Consensus 319 ~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~ 356 (431)
.+-|.|.+.++|..|++.|+|+.|.||.|..++.....
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 89999999999999999999999999999998876443
No 45
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=3.5e-18 Score=159.70 Aligned_cols=245 Identities=20% Similarity=0.425 Sum_probs=190.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcc-----------C-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSI-----------G-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE 167 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~ 167 (431)
+.+.++|+++|+.++++.+..+|..- | .+..|.+-. .+.|||++|.+.+.|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-cccchh
Confidence 55679999999999999999999764 2 366776644 4889999999999999999 689988
Q ss_pred cCCeEeeeccccc-----------------------------cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecC
Q 014086 168 FKGKKIRCSTSQA-----------------------------KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM 218 (431)
Q Consensus 168 ~~g~~i~v~~~~~-----------------------------~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~ 218 (431)
+.|+.+++..... ...++|++||-..++..+.++...+|+ +....++.+
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d- 324 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKD- 324 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeecc-
Confidence 8888877743221 246899999999999999999999999 999999999
Q ss_pred CCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCC--------------------CCCCCcccEE
Q 014086 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVD--------------------SSGASQVKAV 278 (431)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l 278 (431)
..+|.+++|+|.+|.+......|+..+++. .++...+.+..+-..... .....++..|
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 677999999999999999999999999985 445555555444322111 1222334455
Q ss_pred EEecCC--CCC-CH-------HHHHHHHhccccEEEEEecCC-CC--CCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc
Q 014086 279 YVKNLP--RNV-TQ-------DQLKKLFEHHGRITKVVVPPA-KP--GQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ 345 (431)
Q Consensus 279 ~V~nLp--~~~-t~-------~~L~~~F~~~G~v~~v~i~~~-~~--~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~ 345 (431)
.+.|+= ... .+ ++++.-|++||.|..|.|++. .. -....|..||+|.+.+++++|+..|+|+.|.+|
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 555541 111 11 556777889999999999988 22 223357889999999999999999999999999
Q ss_pred EEEEEeccCC
Q 014086 346 ALECSLAKPQ 355 (431)
Q Consensus 346 ~l~v~~a~~~ 355 (431)
.|...|-...
T Consensus 483 tVvtsYydeD 492 (500)
T KOG0120|consen 483 TVVASYYDED 492 (500)
T ss_pred EEEEEecCHH
Confidence 9999987543
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=2.7e-18 Score=138.32 Aligned_cols=83 Identities=24% Similarity=0.611 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+++|||+|||+++|+++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++||+.|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q 014086 179 QAK 181 (431)
Q Consensus 179 ~~~ 181 (431)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 47
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=1.1e-18 Score=160.82 Aligned_cols=171 Identities=25% Similarity=0.443 Sum_probs=141.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcccc
Q 014086 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (431)
Q Consensus 182 ~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (431)
+++|+..|+...+.-+|.++|+..|. |..++++.+ +.+++++|.+||+|.+.+....|+ .|+++ .+.+.++.|+.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGq--rllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQ--RLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCC--cccCceeEecc
Confidence 57888889999999999999999999 999999999 899999999999999988888777 55554 33344444433
Q ss_pred CCCCCC----------CCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHH
Q 014086 262 ADPRNV----------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAM 331 (431)
Q Consensus 262 ~~~~~~----------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~ 331 (431)
...... ......+..+|||+||.+++++.+|+.+|++||.|..|.+.++..++.++|||||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 321110 0111223345999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 332 KALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 332 ~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
+|+..|||..|.|+.|+|........
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999988765443
No 48
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.74 E-value=2.1e-16 Score=138.54 Aligned_cols=243 Identities=19% Similarity=0.253 Sum_probs=196.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH--hCCCccCCeEee
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK--LNNTEFKGKKIR 174 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~--l~~~~~~g~~i~ 174 (431)
.+..+-.|.|++|-..+++.+|.+.++.||+|..|..+.. +..|.|+|.+.+.|+.|+.. -+...+.|+...
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3567789999999999999999999999999999988765 56799999999999999842 233446777766
Q ss_pred ecccccc-------------cc--ccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHH
Q 014086 175 CSTSQAK-------------YR--LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAE 239 (431)
Q Consensus 175 v~~~~~~-------------~~--l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 239 (431)
+.++... +. +.|-|--..+|.+-|..+....|+ |..|.+++. +.--|.|+|.+.+.|+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 6665432 22 344555678999999999999999 888888764 3456999999999999
Q ss_pred HHHHHhCCCCcccCCCCCccccCCCCCCCC--------------------------------------------------
Q 014086 240 YSRQKMTNPNFKLGTNAPTVSWADPRNVDS-------------------------------------------------- 269 (431)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 269 (431)
+|..+||+..+..+-..+.+.++.|.....
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 999999998877777777777765541100
Q ss_pred ----------------------------CCCCcccEEEEecCCC-CCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEE
Q 014086 270 ----------------------------SGASQVKAVYVKNLPR-NVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320 (431)
Q Consensus 270 ----------------------------~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~a 320 (431)
....+...+.|.+|.. .++.+.|.++|..||.|.+|++++.+ .|.|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gta 328 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTA 328 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----ccee
Confidence 0011256889999985 56889999999999999999999887 5789
Q ss_pred EEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 321 fV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
.|++.+..+.++|+..||+..+.|.+|.|.+++...-
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 9999999999999999999999999999999875444
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.70 E-value=6.2e-16 Score=140.88 Aligned_cols=167 Identities=17% Similarity=0.290 Sum_probs=129.2
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccC
Q 014086 183 RLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWA 262 (431)
Q Consensus 183 ~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~ 262 (431)
.|.+.+|||++|+++|.++|+.++ |..+.+.+ .+|+..|-|||+|.+.+++.+|++.-.. .++.+-+.|-.+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR~---~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDRE---SMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhHH---HhCCceEEEEcc
Confidence 466789999999999999999998 77755554 4899999999999999999999876543 344455554444
Q ss_pred CCCCCCC-------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEE-EEecCCCCCCCcCCEEEEEeCCHHHHHHHH
Q 014086 263 DPRNVDS-------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 263 ~~~~~~~-------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~~~~~~~rg~afV~F~~~~~A~~Al 334 (431)
....... ........|.+++||+.||+++|.+||+..-.|.. |.++.+..++ +.|-|||+|.+.+.|++||
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR-~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGR-PTGEAFVQFESQESAEIAL 162 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCC-cccceEEEecCHHHHHHHH
Confidence 3222111 11134578999999999999999999998866665 5566676666 5899999999999999999
Q ss_pred HhcCCCccCCcEEEEEeccCCCCCC
Q 014086 335 KNTEKYELDGQALECSLAKPQADQK 359 (431)
Q Consensus 335 ~~l~~~~~~g~~l~v~~a~~~~~~~ 359 (431)
.. |...|+.|.|.|..++....++
T Consensus 163 ~r-hre~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 163 GR-HRENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HH-HHHhhccceEEeehhHHHHHHh
Confidence 75 6778999999998887554443
No 50
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=3.3e-16 Score=129.56 Aligned_cols=81 Identities=27% Similarity=0.502 Sum_probs=75.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
++|||+||++.++.+.|+++|++||.|+++.|+.|+.++++||||||+|.+.++|.+|+...|- .|+||+..|.+|.-.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchhhhc
Confidence 7999999999999999999999999999999999999999999999999999999999986554 899999999998764
Q ss_pred CC
Q 014086 356 AD 357 (431)
Q Consensus 356 ~~ 357 (431)
..
T Consensus 92 ~~ 93 (247)
T KOG0149|consen 92 GK 93 (247)
T ss_pred Cc
Confidence 33
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.67 E-value=7e-15 Score=130.62 Aligned_cols=236 Identities=19% Similarity=0.227 Sum_probs=181.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC-C-eEeeecccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-G-KKIRCSTSQ 179 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~-g-~~i~v~~~~ 179 (431)
-+++|.|+-+-+|-+-|..+|++||.|..|.-... .+.=.|.|+|.+.+.|..|...|+|.-|- | +.|+|.++.
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 36789999999999999999999999988765432 12334899999999999999999998763 3 466665542
Q ss_pred c----------c-----------------------------------------------------------ccccccCCC
Q 014086 180 A----------K-----------------------------------------------------------YRLFIGNIP 190 (431)
Q Consensus 180 ~----------~-----------------------------------------------------------~~l~v~~lp 190 (431)
- + ..|.|.||-
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 0 0 124445553
Q ss_pred -CCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCC
Q 014086 191 -RNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS 269 (431)
Q Consensus 191 -~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (431)
..+|.+.|..+|.-||. |..+++..+ .+.-|.|+|.+...|..|+..|.+.. +.++.+++.++.......
T Consensus 307 ~~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~~--l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGHK--LYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred hhccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcce--ecCceEEEeeccCccccC
Confidence 45788999999999999 999999887 24679999999999999999999863 445666665554321111
Q ss_pred -------------------------------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCC
Q 014086 270 -------------------------------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNR 318 (431)
Q Consensus 270 -------------------------------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg 318 (431)
.-..++.+|+..|+|.++++++|+.+|..-|-.........+ .+.
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k----d~k 453 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK----DRK 453 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC----Ccc
Confidence 112457899999999999999999999998865544332221 146
Q ss_pred EEEEEeCCHHHHHHHHHhcCCCccCC-cEEEEEeccC
Q 014086 319 IGFVHFAERSSAMKALKNTEKYELDG-QALECSLAKP 354 (431)
Q Consensus 319 ~afV~F~~~~~A~~Al~~l~~~~~~g-~~l~v~~a~~ 354 (431)
+|++.+.+.++|..|+..+|++.++. ..|+|+|++.
T Consensus 454 mal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 454 MALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred eeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999999985 5999999874
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.66 E-value=3e-15 Score=122.30 Aligned_cols=227 Identities=19% Similarity=0.235 Sum_probs=130.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeC-CCCCCCcceEEEEecCHHHHHHHHHHhCCCccC---CeEe
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG-KDSSENKGFAFVTFRNVELASKAIDKLNNTEFK---GKKI 173 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~---g~~i 173 (431)
+..-+||||.+||.++...+|..+|..|--.+.+.|... +...-.+.+|||.|.+...|..|+.+|||..|. +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345799999999999999999999999866666666543 222335689999999999999999999999986 7889
Q ss_pred eeccccccccccccCC---CCCCCHHHHHHHHHhhCCCee-EEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCC
Q 014086 174 RCSTSQAKYRLFIGNI---PRNWGSEDLQKVVSEVGPGVT-GVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPN 249 (431)
Q Consensus 174 ~v~~~~~~~~l~v~~l---p~~~~~~~l~~~f~~~g~~i~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 249 (431)
++..++.+.+.--... |...+. |... .++.... +.....+ .+....+-.-.-. +..| +....
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~a--l~~~--~~~~~qr~sa~~qhd---~~l~~p~~l~~~~----~a~a---l~~~~ 176 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPA--LVID--NRNKEQRKSADDQHD---EGLSDPDELQEPG----NADA---LKEND 176 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCcc--cccc--ccChhhcccchhhcc---ccccCccccCCcc----cccc---CCCcc
Confidence 9988876543221111 110000 0000 0000000 0000000 0000000000000 0000 00000
Q ss_pred c-ccCCCCCccccCCCCCC-------CCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEE
Q 014086 250 F-KLGTNAPTVSWADPRNV-------DSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGF 321 (431)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~af 321 (431)
. ....-.....|+.+... ..+....+.+|||.||...+|+++|+.+|+.|.....++|... ++. ..||
T Consensus 177 ~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~--~vaf 252 (284)
T KOG1457|consen 177 TTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGM--PVAF 252 (284)
T ss_pred ccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCc--ceEe
Confidence 0 00000001111111111 1123344679999999999999999999999976555555332 222 5899
Q ss_pred EEeCCHHHHHHHHHhcCCCcc
Q 014086 322 VHFAERSSAMKALKNTEKYEL 342 (431)
Q Consensus 322 V~F~~~~~A~~Al~~l~~~~~ 342 (431)
|+|.+.+.|..|+..|+|..|
T Consensus 253 ~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 253 ADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ecHHHHHHHHHHHHHhhccee
Confidence 999999999999999888655
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=3.7e-16 Score=110.79 Aligned_cols=70 Identities=40% Similarity=0.840 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
|||+|||+++|+++|+++|++||.|..+.+..+ .+++++++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6799999999999999999999999999999999985
No 54
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3e-16 Score=131.22 Aligned_cols=168 Identities=26% Similarity=0.448 Sum_probs=130.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+-.+++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999885 678999999999999999999999999988888776632
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcccc
Q 014086 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (431)
Q Consensus 182 ~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (431)
..- .|.+.+ +.+.. |
T Consensus 74 ~~~------------------------------------~g~~~~--------------------------g~r~~---~ 88 (216)
T KOG0106|consen 74 RRG------------------------------------RGRPRG--------------------------GDRRS---D 88 (216)
T ss_pred ccc------------------------------------cCCCCC--------------------------CCccc---h
Confidence 110 000000 00000 0
Q ss_pred CCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCc
Q 014086 262 ADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYE 341 (431)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~ 341 (431)
.... ........+|+|.|++..+.+.+|.+.|+++|.+....+ + ++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~~---~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-~-------~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRRY---RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-R-------RNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhcc---CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-h-------ccccceeehhhhhhhhcchhccchh
Confidence 0000 000112268999999999999999999999999966555 1 5799999999999999999999999
Q ss_pred cCCcEEEEEecc
Q 014086 342 LDGQALECSLAK 353 (431)
Q Consensus 342 ~~g~~l~v~~a~ 353 (431)
+.+++|.+....
T Consensus 158 ~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 158 LNGRRISVEKNS 169 (216)
T ss_pred hcCceeeecccC
Confidence 999999994443
No 55
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.8e-16 Score=128.07 Aligned_cols=82 Identities=29% Similarity=0.474 Sum_probs=79.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
...+|.|.||+.++++.+|+++|.+||.|.+|.|.+++.++.+||||||.|.+.++|.+||..|||+-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 014086 354 PQ 355 (431)
Q Consensus 354 ~~ 355 (431)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=8.4e-16 Score=108.95 Aligned_cols=70 Identities=29% Similarity=0.563 Sum_probs=65.7
Q ss_pred EEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
|||+|||.++|+++|+++|+.||.|..+.+..+ ..+.++|+|||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 4555689999999999999999999999999999986
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=9e-16 Score=127.36 Aligned_cols=82 Identities=29% Similarity=0.496 Sum_probs=79.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
+.++|.|.||+.++++.+|+++|.+||.|..|.|.+++.||.++|||||.|.+.++|.+||+.|||.-+..-.|+|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc
Q 014086 180 AK 181 (431)
Q Consensus 180 ~~ 181 (431)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 64
No 58
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=1.3e-15 Score=123.03 Aligned_cols=82 Identities=27% Similarity=0.487 Sum_probs=78.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
....|.|.||.+.++.++|+.+|++||.|.+|.|+++..+..++|||||.|....+|+.|+.+|+|..++|+.|.|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 014086 354 PQ 355 (431)
Q Consensus 354 ~~ 355 (431)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=6.3e-16 Score=127.88 Aligned_cols=78 Identities=28% Similarity=0.638 Sum_probs=72.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
-++|||+||+|.++.+.|+++|++||.|+.+.|+.|+.||+||||+||+|++.++|.+|++ --+-.|+||+..|..+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhh
Confidence 3689999999999999999999999999999999999999999999999999999999995 45677999999887654
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.2e-15 Score=113.55 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=76.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+.+|||+||++.+++++|.++|+++|.|..|.+-.++.+..+-|||||+|.+.++|..|++-+||+.++.++|+|.|...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 37999999999999999999999999999999999999988899999999999999999999999999999999999753
No 61
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=1.5e-15 Score=140.25 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=78.7
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
...++|||+|||+++|+++|+++|+.||.|+.|+|+++..++.++|||||+|.+.++|.+||..||+..|.+++|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34589999999999999999999999999999999999988888999999999999999999999999999999999998
Q ss_pred cCC
Q 014086 353 KPQ 355 (431)
Q Consensus 353 ~~~ 355 (431)
++.
T Consensus 185 ~p~ 187 (346)
T TIGR01659 185 RPG 187 (346)
T ss_pred ccc
Confidence 764
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=2.2e-15 Score=106.61 Aligned_cols=70 Identities=44% Similarity=0.819 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
|||+|||+++++++|+++|+.||.|..+++..++. +.++++|||+|.+.++|.+|++.+++..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999998999999884
No 63
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.4e-15 Score=113.19 Aligned_cols=82 Identities=17% Similarity=0.340 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...++||||+||++.+++++|.++|+++|+|..|.+=.++.+..+-|||||+|-+.++|..|++-+++..+..+.|+|.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q 014086 178 SQ 179 (431)
Q Consensus 178 ~~ 179 (431)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.8e-15 Score=130.68 Aligned_cols=86 Identities=22% Similarity=0.368 Sum_probs=77.8
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
+.....++|+|.|||+...+-||+.+|.+||.|.+|.|+.+..+. ||||||+|.+.++|.+|...|||..|.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGS--KGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGS--KGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCC--CccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 334446899999999999999999999999999999999987664 699999999999999999999999999999999
Q ss_pred EeccCCCC
Q 014086 350 SLAKPQAD 357 (431)
Q Consensus 350 ~~a~~~~~ 357 (431)
..|...-.
T Consensus 169 n~ATarV~ 176 (376)
T KOG0125|consen 169 NNATARVH 176 (376)
T ss_pred eccchhhc
Confidence 99986544
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=7.5e-15 Score=104.94 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=73.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.+.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||.|.+..+|.+|++.|+|..+.++.|.|-+-.+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 478999999999999999999999999999999887766 78999999999999999999999999999999998765
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 95 ~~~ 97 (124)
T KOG0114|consen 95 EDA 97 (124)
T ss_pred HHH
Confidence 443
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=5.2e-15 Score=104.73 Aligned_cols=70 Identities=31% Similarity=0.565 Sum_probs=64.5
Q ss_pred EEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
|||+|||+++++++|+++|+.||.|..+++..++. +.++|+|||+|.+.++|.+|+..+++..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999887 67799999999999999999999999999999985
No 67
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=132.48 Aligned_cols=169 Identities=28% Similarity=0.531 Sum_probs=123.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+++|+++|.++|..||.|..|.+..++.+++++|||||.|.+.++|..|++.+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999988653
Q ss_pred --cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 181 --KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 181 --~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
........+ .. ..... ..
T Consensus 195 ~~~~~~~~~~~-----------~~----------------------------------------~~~~~-----~~---- 214 (306)
T COG0724 195 ASQPRSELSNN-----------LD----------------------------------------ASFAK-----KL---- 214 (306)
T ss_pred ccccccccccc-----------cc----------------------------------------hhhhc-----cc----
Confidence 000000000 00 00000 00
Q ss_pred cccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHH
Q 014086 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (431)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~ 335 (431)
.............+++.+++..++...+...|..+|.+..+.+...........+.++.+.....+..++.
T Consensus 215 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 ------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred ------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00000112233689999999999999999999999999888777766554434444444444444444443
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=8e-15 Score=126.06 Aligned_cols=76 Identities=18% Similarity=0.369 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+++.. ++|||||+|.+.++|..|| .|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 68999999999999999999999999999999998853 5799999999999999999 5999999999999998764
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=9.4e-15 Score=125.62 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
++|||+|||+.+|+++|+++|+.||.|.+|+|++++. ++|||||+|.+.++|..||. |||..|.|+.|.|.++..-
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 7999999999999999999999999999999998864 36899999999999999995 9999999999999998644
No 70
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=2.4e-16 Score=124.61 Aligned_cols=81 Identities=27% Similarity=0.582 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
.++..|||+|||++.|+.+|--.|++||.|+.|.+++|+.||+|+||||+.|.+..+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred c
Q 014086 179 Q 179 (431)
Q Consensus 179 ~ 179 (431)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.8e-14 Score=113.57 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=72.9
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
++|||+||+..+++.+|..+|..||.|..|.|.... .|||||+|.++.+|..|+..|+|..|.|..|+|++++..
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 799999999999999999999999999999998865 689999999999999999999999999999999998865
Q ss_pred CCC
Q 014086 356 ADQ 358 (431)
Q Consensus 356 ~~~ 358 (431)
...
T Consensus 86 ~r~ 88 (195)
T KOG0107|consen 86 PRG 88 (195)
T ss_pred ccc
Confidence 553
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=7.1e-14 Score=119.48 Aligned_cols=94 Identities=17% Similarity=0.351 Sum_probs=83.6
Q ss_pred CCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC
Q 014086 264 PRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD 343 (431)
Q Consensus 264 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~ 343 (431)
|.........+-++|||.-|++++++..|+..|+.||.|..|+|+.+..++.++|||||+|.+..+...|....+|..|+
T Consensus 90 P~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id 169 (335)
T KOG0113|consen 90 PNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID 169 (335)
T ss_pred CCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec
Confidence 33333334456689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeccCCCC
Q 014086 344 GQALECSLAKPQAD 357 (431)
Q Consensus 344 g~~l~v~~a~~~~~ 357 (431)
|+.|.|.+-+....
T Consensus 170 grri~VDvERgRTv 183 (335)
T KOG0113|consen 170 GRRILVDVERGRTV 183 (335)
T ss_pred CcEEEEEecccccc
Confidence 99999999764443
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=2.4e-14 Score=102.40 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=74.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
|.-.+.|||+|||+++|.+++.++|.+||.|..|+|=..+.| +|.|||.|++..+|.+|+++|+|..+.++.+.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 445788999999999999999999999999999999777554 99999999999999999999999999999999988
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
.++.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7654
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.3e-14 Score=114.45 Aligned_cols=75 Identities=27% Similarity=0.498 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.+.|||+||+..+++.+|...|..||+|.+|+|-+. +.|||||+|+++.+|..|+..|+|..|.|..|+|+.+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 689999999999999999999999999999999876 489999999999999999999999999999999998764
No 75
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.8e-14 Score=123.03 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
+=+||||.-|++++++..|+..|+.||+|..|+|+++..||+++|||||+|....+...|.+..+|..|.|+.|.|.+-.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999997654
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=125.65 Aligned_cols=82 Identities=29% Similarity=0.479 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+...++|+|.|||+...+.||+..|.+||.|.+|.|+.+. .-||||+||+|.+.++|++|.++|||..+.||+|.|..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 3345789999999999999999999999999999999875 45899999999999999999999999999999999998
Q ss_pred cccc
Q 014086 178 SQAK 181 (431)
Q Consensus 178 ~~~~ 181 (431)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8754
No 77
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1.1e-14 Score=117.60 Aligned_cols=82 Identities=23% Similarity=0.444 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...-.+|.|-||.+.+|.++|+.+|++||.|-+|.|..|+.|+.++|||||.|....+|+.|+++|+|.+|.|+.|+|..
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 014086 178 SQ 179 (431)
Q Consensus 178 ~~ 179 (431)
|.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 65
No 78
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.9e-14 Score=119.70 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
+.+.+|||+||++.+|+++|++||+.||.|.+|+|+++ +..++||||+|.++++|..|+ .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 45789999999999999999999999999999999998 455789999999999999999 79999999999999876
Q ss_pred cc
Q 014086 179 QA 180 (431)
Q Consensus 179 ~~ 180 (431)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=2.8e-14 Score=129.73 Aligned_cols=77 Identities=21% Similarity=0.476 Sum_probs=72.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCH--HHHHHHHHHhCCCccCCeEeeeccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV--ELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~--e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..+|||+||++++|+++|+.+|+.||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||..|.||.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 5789999999999999999999999999999999 4567 99999999987 7899999999999999999999998
Q ss_pred ccc
Q 014086 179 QAK 181 (431)
Q Consensus 179 ~~~ 181 (431)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 765
No 80
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.7e-13 Score=108.85 Aligned_cols=79 Identities=25% Similarity=0.516 Sum_probs=70.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+++|||+|||.++.+.+|.++|.+||.|..|.+.... + ...||||+|.++.+|..||..-+|..++|++|+|.|++.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-G--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-C--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 4799999999999999999999999999999885443 2 136999999999999999999999999999999999874
Q ss_pred CC
Q 014086 355 QA 356 (431)
Q Consensus 355 ~~ 356 (431)
..
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 43
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=6.1e-14 Score=127.57 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=70.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCH--HHHHHHHHhcCCCccCCcEEEEEec
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAER--SSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~--~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
..+|||+||++.+|+++|+.+|+.||.|.+|.|++. ++ ||||||+|.+. .++.+||..|||..+.|+.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 369999999999999999999999999999999944 33 79999999987 7899999999999999999999999
Q ss_pred cCC
Q 014086 353 KPQ 355 (431)
Q Consensus 353 ~~~ 355 (431)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 863
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.50 E-value=4.5e-13 Score=120.19 Aligned_cols=168 Identities=23% Similarity=0.340 Sum_probs=137.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccc
Q 014086 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (431)
Q Consensus 181 ~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (431)
.+.+||.|||+++.|++|+++|....-.|+.|.+..| ..|+++|+|.|+|+.++.+++|+..|+.. .+.++.+.++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk~--~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNKY--EVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhhc--cccCceEEEe
Confidence 4569999999999999999999987655999999998 89999999999999999999999999853 4444444443
Q ss_pred cCCCCCCCC-----------------------------------------------------------------------
Q 014086 261 WADPRNVDS----------------------------------------------------------------------- 269 (431)
Q Consensus 261 ~~~~~~~~~----------------------------------------------------------------------- 269 (431)
-........
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 322100000
Q ss_pred ----------CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 270 ----------SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 270 ----------~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
-..+-..++||.||.+.+....|++.|.-.|.|..|.+-.++.+ .++||+.|+|..+-.|..||..+++
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhcc
Confidence 00111468999999999999999999999999999999999988 4589999999999999999999998
Q ss_pred CccCCcEEEEEecc
Q 014086 340 YELDGQALECSLAK 353 (431)
Q Consensus 340 ~~~~g~~l~v~~a~ 353 (431)
.-+..++..+.+.+
T Consensus 279 ~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDR 292 (608)
T ss_pred CCCccccceeeccc
Confidence 77888888888754
No 83
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.3e-14 Score=115.94 Aligned_cols=86 Identities=30% Similarity=0.493 Sum_probs=81.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
.++|||++|...+|+.-|...|-+||.|..|.++.|..+++.||||||+|.-.++|.+||..||+..+.||.|+|.+|+|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 014086 355 QADQKS 360 (431)
Q Consensus 355 ~~~~~~ 360 (431)
......
T Consensus 90 ~kikeg 95 (298)
T KOG0111|consen 90 EKIKEG 95 (298)
T ss_pred ccccCC
Confidence 766543
No 84
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5e-15 Score=117.18 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=75.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+.-|||+|||+.+|+.||.-+|++||.|++|.+++|+.++.++||||+.|.+..+..-|+..|||..|.||.|+|.-..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999997654
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.9e-13 Score=96.15 Aligned_cols=72 Identities=38% Similarity=0.719 Sum_probs=67.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
+|||+|||..++.++|+++|..||.|..+.++.+. +.++|+|||+|.+.++|.+|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7789999999999999999999999999999999873
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=113.94 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=69.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
..+|||+||++.+|+++|++||+.||.|.+|+|+++... ++||||+|.++++|..|+ .|||..|.+++|.|..+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et---~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY---ACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc---ceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 379999999999999999999999999999999998533 579999999999999999 5999999999999988764
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4e-13 Score=95.41 Aligned_cols=72 Identities=32% Similarity=0.577 Sum_probs=66.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
+|+|+|||..++.++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|.+|+..+++..|.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999877 4557999999999999999999999999999999873
No 88
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.46 E-value=1.1e-11 Score=109.22 Aligned_cols=163 Identities=16% Similarity=0.242 Sum_probs=130.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcccc
Q 014086 182 YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSW 261 (431)
Q Consensus 182 ~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~ 261 (431)
..+.|++|-..+++.+|.+.++.||+ |..+..+.. +..+.|+|.+.+.|..++.-.....+.+.+....+.+
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~-i~yvt~~P~-------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGP-IAYVTCMPH-------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCc-eEEEEeccc-------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 35788999999999999999999999 777776655 6679999999999999998888777778887777777
Q ss_pred CCCCCCCC---CCCCcccEEE--EecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 262 ADPRNVDS---SGASQVKAVY--VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 262 ~~~~~~~~---~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
+....... ....+.+.|. |-|--+.+|.+.|..++...|.|.+|.|++.+ + -.|.|+|.+.+.|++|...
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-g----VQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-G----VQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-c----eeeEEeechhHHHHHHHhh
Confidence 64433222 2222334444 45666889999999999999999999998873 1 2699999999999999999
Q ss_pred cCCCccC--CcEEEEEeccCCCC
Q 014086 337 TEKYELD--GQALECSLAKPQAD 357 (431)
Q Consensus 337 l~~~~~~--g~~l~v~~a~~~~~ 357 (431)
|||..|. -+.|+|.||+|..-
T Consensus 179 lNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cccccccccceeEEEEecCccee
Confidence 9998774 47999999997543
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=5.6e-13 Score=94.31 Aligned_cols=71 Identities=37% Similarity=0.761 Sum_probs=67.4
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 106 IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 106 V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988889999999999999999999999999999999999873
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=5e-13 Score=100.47 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=80.5
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
......|||.++...+|+++|.+.|..||.|.+|++..++.++-.+|||+|+|.+..+|++|+..+||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34457999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
+-.....
T Consensus 149 ~Fv~gp~ 155 (170)
T KOG0130|consen 149 CFVKGPE 155 (170)
T ss_pred EEecCCc
Confidence 8755443
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.8e-13 Score=102.87 Aligned_cols=80 Identities=25% Similarity=0.482 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
++..|||.++...+|+++|.+.|..||+|..+.+-.++.||..+|||.|+|.+.++|++|+..+|+..|.|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999874
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=6e-13 Score=94.14 Aligned_cols=71 Identities=35% Similarity=0.562 Sum_probs=66.4
Q ss_pred EecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 280 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
|+|||..+++++|+++|+.||.|..+.+..++.+..++|+|||+|.+.++|.+|+..+++..+.|++|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999888777778999999999999999999999999999999873
No 93
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=4e-13 Score=106.72 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=76.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..+|||+||+..++++.|+++|-+.|.|++++|++++.++..+|||||+|.+.++|.-|+..||...+.||+|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3799999999999999999999999999999999999999889999999999999999999999999999999999998
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.2e-13 Score=111.19 Aligned_cols=84 Identities=27% Similarity=0.558 Sum_probs=80.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...++|||++|..++|+.-|...|-.||.|..|.+..|..+++.|||+||+|.-.|+|..|+..+|+..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 014086 179 QAKY 182 (431)
Q Consensus 179 ~~~~ 182 (431)
.+.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=1.6e-12 Score=87.16 Aligned_cols=56 Identities=32% Similarity=0.510 Sum_probs=51.9
Q ss_pred HHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 292 LKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 292 L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
|+++|++||.|..|.+.+.. +++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998876 589999999999999999999999999999999986
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=1.8e-12 Score=121.31 Aligned_cols=84 Identities=21% Similarity=0.427 Sum_probs=80.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
..+||+|||+.+++++|..+|+..|.|.+++++.|+.+++++||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CCCC
Q 014086 356 ADQK 359 (431)
Q Consensus 356 ~~~~ 359 (431)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5543
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=2.7e-12 Score=91.61 Aligned_cols=74 Identities=31% Similarity=0.572 Sum_probs=68.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 277 AVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 277 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987766 4479999999999999999999999999999999875
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=3.2e-12 Score=91.24 Aligned_cols=74 Identities=41% Similarity=0.772 Sum_probs=68.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 103 EVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+|+|+|||+.+++++|+++|+.||.|..+.+..+..+ .++++|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988664 7799999999999999999999999999999998853
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.39 E-value=8.3e-13 Score=123.50 Aligned_cols=80 Identities=34% Similarity=0.662 Sum_probs=77.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
+.|||+|+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|.+|++.||+..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998754
No 100
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.1e-13 Score=131.16 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=191.2
Q ss_pred CCCCCEEEEcCCCCCCCHH-HHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEH-DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~-~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
+...+...+.|+-+..... ..+..|..+|.|..|++......-....+.++.+....++..|. ...+..+.++.+.|.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCC
Confidence 4456677888887776555 57889999999999998774332333448899999999999999 478888899988887
Q ss_pred ccccc----------------ccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHH
Q 014086 177 TSQAK----------------YRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEY 240 (431)
Q Consensus 177 ~~~~~----------------~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 240 (431)
.+.++ .++|++||+..+.+.+|...|..++. +..+.+... ...++.+|+||+.|.....+.+
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhh
Confidence 76654 25899999999999999999999987 776666633 6788999999999999999998
Q ss_pred HHHHhCCCCcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEE
Q 014086 241 SRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIG 320 (431)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~a 320 (431)
++.......+. ...|+|+|+|+..|.+.|+.+|+.+|.+.+++++..+.+.. +|.|
T Consensus 725 aV~f~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkp-kg~a 780 (881)
T KOG0128|consen 725 AVAFRDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKP-KGKA 780 (881)
T ss_pred hhhhhhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccc-ccce
Confidence 88765543211 15799999999999999999999999999999888877665 8999
Q ss_pred EEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 321 FVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 321 fV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
||.|.+..+|.+++.......+.-+.+.|....|...
T Consensus 781 ~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 781 RVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred eccCCCcchhhhhcccchhhhhhhcCccccccCCccc
Confidence 9999999999999988888888888888888777333
No 101
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=3.9e-11 Score=115.37 Aligned_cols=77 Identities=25% Similarity=0.509 Sum_probs=72.3
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+++|||++|+..+++.+|.++|+.||.|.+|.++.. ||||||.+.+..+|.+|+.+|++..+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 799999999999999999999999999999999876 59999999999999999999999999999999999975
Q ss_pred CCC
Q 014086 355 QAD 357 (431)
Q Consensus 355 ~~~ 357 (431)
...
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 443
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=4.1e-12 Score=89.27 Aligned_cols=62 Identities=16% Similarity=0.350 Sum_probs=54.6
Q ss_pred HHHHHHHHh----ccccEEEEE-ecCCCCC--CCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 289 QDQLKKLFE----HHGRITKVV-VPPAKPG--QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 289 ~~~L~~~F~----~~G~v~~v~-i~~~~~~--~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
+++|+++|+ .||.|.+|. |+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 999999995 6666555 7779999999999999999999999999999999863
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=4.2e-11 Score=110.60 Aligned_cols=185 Identities=19% Similarity=0.308 Sum_probs=122.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC-C--CCCCcc---eEEEEecCHHHHHHHHHHhCCCccCC
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-D--SSENKG---FAFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~--~g~~~g---~afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
.+.-++.|||++||++++++.|...|..||.+.- ...... . --.++| |+|+.|+++..+..-|.++.- .-..
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 3556789999999999999999999999998752 222110 1 113455 999999999999888866543 1222
Q ss_pred eEeeeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCc
Q 014086 171 KKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (431)
Q Consensus 171 ~~i~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 250 (431)
-.|.|+....+.+ .|.=+|+. +... -||..
T Consensus 333 ~yf~vss~~~k~k-~VQIrPW~---------------------laDs----------~fv~d------------------ 362 (520)
T KOG0129|consen 333 YYFKVSSPTIKDK-EVQIRPWV---------------------LADS----------DFVLD------------------ 362 (520)
T ss_pred eEEEEecCccccc-ceeEEeeE---------------------eccc----------hhhhc------------------
Confidence 2333332221111 01101110 0000 00000
Q ss_pred ccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHh-ccccEEEEEecCCCCCCCcCCEEEEEeCCHHH
Q 014086 251 KLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329 (431)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~ 329 (431)
......+.+||||++||.-++.++|..+|. -||.|..+-|-.|..-+-++|-|-|+|.+..+
T Consensus 363 -----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqs 425 (520)
T KOG0129|consen 363 -----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQA 425 (520)
T ss_pred -----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHH
Confidence 111223348999999999999999999998 69999999999997777779999999999999
Q ss_pred HHHHHHh----cCCCccCCcEEEEEe
Q 014086 330 AMKALKN----TEKYELDGQALECSL 351 (431)
Q Consensus 330 A~~Al~~----l~~~~~~g~~l~v~~ 351 (431)
-.+||.+ |+...|. ++|.|+.
T Consensus 426 Yi~AIsarFvql~h~d~~-KRVEIkP 450 (520)
T KOG0129|consen 426 YIKAISARFVQLDHTDID-KRVEIKP 450 (520)
T ss_pred HHHHHhhheEEEeccccc-eeeeecc
Confidence 9999975 3333333 4555543
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.33 E-value=7.3e-12 Score=88.01 Aligned_cols=62 Identities=26% Similarity=0.463 Sum_probs=56.3
Q ss_pred HHHHHHHhh----ccCCeEEEE-EeeCCCC--CCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 115 EHDLRDFCQ----SIGEVTEVR-IMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 115 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
+++|+++|+ .||.|.+|. ++.++.+ ++++|||||+|.+.++|.+|+..|||..+.||.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 999999996 7777766 9999999999999999999999999999999999863
No 105
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=9.1e-12 Score=115.89 Aligned_cols=73 Identities=27% Similarity=0.467 Sum_probs=66.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
.-..++|+|-|||.++++++|+.+|+.||+|..|+.-+. .+|.+||+|-+..+|++|+++|++..+.|++|..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 346789999999999999999999999999999776554 4899999999999999999999999999999883
No 106
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=1e-11 Score=114.06 Aligned_cols=80 Identities=30% Similarity=0.546 Sum_probs=76.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
..+|||+|||+.+|+++|+++|..||.|..|.+..++.++.++|||||+|.+.++|..|+..+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999999999988888899999999999999999999999999999999999764
No 107
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.28 E-value=3.4e-11 Score=112.10 Aligned_cols=82 Identities=26% Similarity=0.503 Sum_probs=70.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
..|||+|||.+++...|+++|..||.|+...|.....+....+||||+|.+.+++..||.+ +-..|++++|.|.-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988876654444348999999999999999986 578899999999987765
Q ss_pred CCC
Q 014086 356 ADQ 358 (431)
Q Consensus 356 ~~~ 358 (431)
...
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 443
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=1.6e-11 Score=82.23 Aligned_cols=56 Identities=43% Similarity=0.748 Sum_probs=50.8
Q ss_pred HHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 118 LRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 118 l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
|+++|++||.|..+.+.... +++|||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997753 599999999999999999999999999999999874
No 109
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.27 E-value=1.6e-11 Score=109.96 Aligned_cols=181 Identities=20% Similarity=0.292 Sum_probs=142.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..+++|++++.+.+.+.++..++..+|.+..+.+........++|+++|.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 47899999999999999999999999999988888877889999999999999999999996433335555555433222
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCcc
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTV 259 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~ 259 (431)
... +.+. +
T Consensus 167 ~~~-~~~~-----------------------------n------------------------------------------ 174 (285)
T KOG4210|consen 167 RRG-LRPK-----------------------------N------------------------------------------ 174 (285)
T ss_pred ccc-cccc-----------------------------c------------------------------------------
Confidence 110 0000 0
Q ss_pred ccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 260 SWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
.............++|++|++.+++++|+..|..+|.|..++++.+..++.++|||||.|.+...+..++.. ..
T Consensus 175 -----~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~ 248 (285)
T KOG4210|consen 175 -----KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QT 248 (285)
T ss_pred -----hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-cc
Confidence 000000011113455999999999999999999999999999999999999999999999999999999987 88
Q ss_pred CccCCcEEEEEeccCCCCC
Q 014086 340 YELDGQALECSLAKPQADQ 358 (431)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~ 358 (431)
..+.++++++.+..+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 249 RSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred CcccCcccccccCCCCccc
Confidence 8999999999998876554
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.25 E-value=1.7e-10 Score=111.12 Aligned_cols=75 Identities=27% Similarity=0.541 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
.++||||++|+..+++.+|..+|+.||.|.+|.++.. +|||||.+....+|.+||.+|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 6789999999999999999999999999999999764 9999999999999999999999999999999999886
Q ss_pred c
Q 014086 180 A 180 (431)
Q Consensus 180 ~ 180 (431)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=1.8e-11 Score=108.28 Aligned_cols=143 Identities=24% Similarity=0.306 Sum_probs=113.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc----CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee--
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSI----GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC-- 175 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v-- 175 (431)
-.|.+++||+++|+.++.+||... |-+..|.++..++ |+..|-|||.|..+++|+.||.+ |...|+-|.|.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 358899999999999999999743 2445666666544 99999999999999999999964 544444444443
Q ss_pred -----------------------------------ccccccccccccCCCCCCCHHHHHHHHHhhCCCeeE--EEEeecC
Q 014086 176 -----------------------------------STSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTG--VELVKDM 218 (431)
Q Consensus 176 -----------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~--~~~~~~~ 218 (431)
-....+.+|.+++||...+.++|..+|..|-..|.. +.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 222335689999999999999999999999765555 555554
Q ss_pred CCCCCCcceEEeecCChhHHHHHHHHhCCC
Q 014086 219 KNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (431)
Q Consensus 219 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (431)
..|++.|-|||+|.+.+.|..|.+..+++
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 89999999999999999999998887764
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=1.5e-11 Score=103.54 Aligned_cols=85 Identities=21% Similarity=0.452 Sum_probs=80.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.-+++|+|||..||.+..+.+|...|-.||.|++.++..|+.|..+|.|+||.|.++.+|+.||.++||..|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
..+++
T Consensus 361 LKRPk 365 (371)
T KOG0146|consen 361 LKRPK 365 (371)
T ss_pred hcCcc
Confidence 76654
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1e-11 Score=108.70 Aligned_cols=83 Identities=18% Similarity=0.399 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
.++...|||..|.+-+|.++|.-+|+.||.|.+|.++++..||-+..||||+|.+.+++.+|.=+|++..|..|+|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 014086 178 SQA 180 (431)
Q Consensus 178 ~~~ 180 (431)
+++
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 774
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.20 E-value=1.4e-10 Score=110.14 Aligned_cols=77 Identities=12% Similarity=0.177 Sum_probs=65.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
.+.|.+.|+|++++-+||.+||..|-.+-.-.+++..+.+...|-|.|-|.+.++|.+|...|+++.|..|.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 46899999999999999999999997665433344445555689999999999999999999999999999998865
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.18 E-value=2.5e-10 Score=108.50 Aligned_cols=164 Identities=12% Similarity=0.080 Sum_probs=109.4
Q ss_pred ccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCC----CcccC------
Q 014086 184 LFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP----NFKLG------ 253 (431)
Q Consensus 184 l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~----~~~~~------ 253 (431)
+.+++.+++.+..+++++|...- +....+..+ ...+...|-++|.|.....+.+|++..+.- .+.+.
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccc
Confidence 34466777778888888886543 444444444 233444788999999999999997764421 11000
Q ss_pred --------------------CCCCccccCCCCCCC--CCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEE-EEecCC
Q 014086 254 --------------------TNAPTVSWADPRNVD--SSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITK-VVVPPA 310 (431)
Q Consensus 254 --------------------~~~~~~~~~~~~~~~--~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v~i~~~ 310 (431)
++......+...... ........+|||..||..+++.++.++|...-.|++ |.|.+.
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~ 470 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL 470 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC
Confidence 000000000000000 012233689999999999999999999998877776 777666
Q ss_pred CCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 311 KPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 311 ~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
..+.. ++.|||.|..++++..|+..-+.+.++.|.|+|.-
T Consensus 471 P~~~~-~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 471 PTDLL-RPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred Ccccc-cchhhheeccccccchhhhcccccccCceEEEeec
Confidence 55555 78999999999999998877777778888888864
No 116
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=3.7e-11 Score=102.63 Aligned_cols=72 Identities=29% Similarity=0.617 Sum_probs=68.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
.+|||+|||..+++.+|+.+|++||+|+.|.|++ .||||...+...|..||+.|||.+|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4799999999999999999999999999999987 58999999999999999999999999999999998876
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=7e-12 Score=102.59 Aligned_cols=140 Identities=24% Similarity=0.332 Sum_probs=116.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 97 LPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 97 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.++..+||||.||...++++-|.++|-+-|+|..|.|...++ +..+ ||||.|.++-++.-|++.+||..+.++.|.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 355679999999999999999999999999999999988766 5555 99999999999999999999999999888664
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCC
Q 014086 177 TSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNA 256 (431)
Q Consensus 177 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 256 (431)
+
T Consensus 83 ~------------------------------------------------------------------------------- 83 (267)
T KOG4454|consen 83 L------------------------------------------------------------------------------- 83 (267)
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CccccCCCCCCCCCCCCcccEEEEec----CCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHH
Q 014086 257 PTVSWADPRNVDSSGASQVKAVYVKN----LPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMK 332 (431)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~ 332 (431)
+.++ |...++++.+...|+..|.+..+++..+.+++ ++.++|+.+-...+.-.
T Consensus 84 ----------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~r-nrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 84 ----------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGR-NRNFGFVTYQRLCAVPF 140 (267)
T ss_pred ----------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCC-ccCccchhhhhhhcCcH
Confidence 2222 44567889999999999999999999998854 48899999877766666
Q ss_pred HHHhcCCC
Q 014086 333 ALKNTEKY 340 (431)
Q Consensus 333 Al~~l~~~ 340 (431)
++....+.
T Consensus 141 ~~~~y~~l 148 (267)
T KOG4454|consen 141 ALDLYQGL 148 (267)
T ss_pred Hhhhhccc
Confidence 76654443
No 118
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.16 E-value=1.4e-10 Score=96.41 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=72.5
Q ss_pred cEEEEecCCCCCCHHHHHH----HHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 276 KAVYVKNLPRNVTQDQLKK----LFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~----~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
.+|||.||...+..++|+. +|++||.|..|...+.. +.||-|||.|.+.+.|..|+..|+|..|.|++++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~---KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP---KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC---CccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999988 99999999999887643 3489999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 014086 352 AKPQADQ 358 (431)
Q Consensus 352 a~~~~~~ 358 (431)
|+....-
T Consensus 87 A~s~sdi 93 (221)
T KOG4206|consen 87 AKSDSDI 93 (221)
T ss_pred ccCccch
Confidence 9876653
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=7.6e-10 Score=97.18 Aligned_cols=77 Identities=26% Similarity=0.484 Sum_probs=69.6
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh-cCCCccCCcEEEEE
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN-TEKYELDGQALECS 350 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~-l~~~~~~g~~l~v~ 350 (431)
....++|||++|-..+++.+|++.|.+||.|..|+++..+ ++|||+|.+.++|+.|... +|...|+|++|+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 3445899999998899999999999999999999998874 8999999999999998766 56778899999999
Q ss_pred eccC
Q 014086 351 LAKP 354 (431)
Q Consensus 351 ~a~~ 354 (431)
|.++
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9998
No 120
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=2.2e-10 Score=112.12 Aligned_cols=167 Identities=17% Similarity=0.261 Sum_probs=133.8
Q ss_pred hcCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 95 LALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 95 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
.++...++|||++||+..+++.+|+..|..+|.|..|.|..-. -+.-..|+||.|.+...+-+|...+.+..|..-.++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 3446678999999999999999999999999999999986653 255577899999999988888877766554433332
Q ss_pred eccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCC
Q 014086 175 CSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGT 254 (431)
Q Consensus 175 v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 254 (431)
+.+...
T Consensus 445 ~glG~~-------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 445 IGLGQP-------------------------------------------------------------------------- 450 (975)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 221110
Q ss_pred CCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHH
Q 014086 255 NAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al 334 (431)
....++.+++++|+.++....|...|..||.|..|.+-... -||+|.|.+...|+.|+
T Consensus 451 ----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~ 508 (975)
T KOG0112|consen 451 ----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAAT 508 (975)
T ss_pred ----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhH
Confidence 01223789999999999999999999999999998875432 59999999999999999
Q ss_pred HhcCCCccCC--cEEEEEeccCCCCC
Q 014086 335 KNTEKYELDG--QALECSLAKPQADQ 358 (431)
Q Consensus 335 ~~l~~~~~~g--~~l~v~~a~~~~~~ 358 (431)
+.|.|..|++ ++|+|.||.+....
T Consensus 509 ~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 509 HDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HHHhcCcCCCCCcccccccccCCCCC
Confidence 9999999986 78999999866554
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=2.4e-10 Score=93.22 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=76.5
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcc-ccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHH-GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~-G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
...++|..+|..+.+..|..+|.+| |.|..+++.+++.++.++|||||+|.+.+.|.-|-+.||++-|.++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3689999999999999999999998 788899999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 014086 354 PQ 355 (431)
Q Consensus 354 ~~ 355 (431)
|.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 76
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.11 E-value=2.6e-10 Score=93.07 Aligned_cols=84 Identities=27% Similarity=0.507 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
......++|..+|.-+-+..|..+|.+| |.|..+++-+++.||.|+|||||+|.+++.|.-|.+.||+-.|.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456779999999999999999999998 889999999999999999999999999999999999999999999999887
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 65543
No 123
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=5.1e-10 Score=105.50 Aligned_cols=152 Identities=22% Similarity=0.449 Sum_probs=121.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+.....+||+|||...++.++++++..||++....++.+..+|.++||||.+|.++-....|++.|||..+.++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred cccccc----------ccccCCCCC-----------------CCH-------------HHHHHHHHhhCCCeeEEEEeec
Q 014086 178 SQAKYR----------LFIGNIPRN-----------------WGS-------------EDLQKVVSEVGPGVTGVELVKD 217 (431)
Q Consensus 178 ~~~~~~----------l~v~~lp~~-----------------~~~-------------~~l~~~f~~~g~~i~~~~~~~~ 217 (431)
+-.... .-+..|+.. ++. ++++.-+..||. |..|.+.++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCC
Confidence 643211 011111111 111 355666778898 999988877
Q ss_pred C--CCCCCCcceEEeecCChhHHHHHHHHhCCCCc
Q 014086 218 M--KNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNF 250 (431)
Q Consensus 218 ~--~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~ 250 (431)
. .......|..||+|.+.++++.|.+.|+|..|
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 2 22334567789999999999999999999754
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.4e-10 Score=100.18 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=78.5
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+...|||..|.+-+|.++|.-+|+.||.|.+|.|+++..++-+-.||||+|.+.+++++|.=+|++..|++++|+|.|+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 34799999999999999999999999999999999999999888999999999999999999999999999999999987
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
....
T Consensus 318 SVsk 321 (479)
T KOG0415|consen 318 SVSK 321 (479)
T ss_pred hhhh
Confidence 5444
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.04 E-value=4.6e-10 Score=104.36 Aligned_cols=83 Identities=22% Similarity=0.480 Sum_probs=76.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
...+++|||.+|...+...+|+++|++||.|+-.+++.+..+--.+.|+||++.+.++|.+||+.||.+.|+||.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34567899999999999999999999999999999999987777799999999999999999999999999999999987
Q ss_pred ccc
Q 014086 178 SQA 180 (431)
Q Consensus 178 ~~~ 180 (431)
+..
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 753
No 126
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=8.4e-10 Score=99.05 Aligned_cols=82 Identities=32% Similarity=0.631 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
....|||++||.++++.+|+++|.+||.|..+.++.|..+.+++||+||.|.+.+++.+++ ...-+.|.|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 3568999999999999999999999999999999999999999999999999999999999 578889999999999888
Q ss_pred ccc
Q 014086 180 AKY 182 (431)
Q Consensus 180 ~~~ 182 (431)
++.
T Consensus 175 pk~ 177 (311)
T KOG4205|consen 175 PKE 177 (311)
T ss_pred chh
Confidence 653
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.00 E-value=7.7e-10 Score=102.89 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=76.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||.+|...+...+|++||++||.|+-.+|+.+..+..-|+|+||++.+.++|.+||..||.+.+.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35899999999999999999999999999999999988777678999999999999999999999999999999999987
Q ss_pred CC
Q 014086 354 PQ 355 (431)
Q Consensus 354 ~~ 355 (431)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 53
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.2e-09 Score=95.91 Aligned_cols=77 Identities=34% Similarity=0.542 Sum_probs=68.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh-CCCccCCeEeeec
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL-NNTEFKGKKIRCS 176 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l-~~~~~~g~~i~v~ 176 (431)
+...++|||++|-..+++.+|+++|-+||.|.++++... +++|||+|.+.++|+.|.+++ +...|.|++|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 345679999999999999999999999999999999875 779999999999999988765 4455899999999
Q ss_pred cccc
Q 014086 177 TSQA 180 (431)
Q Consensus 177 ~~~~ 180 (431)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 8876
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.98 E-value=6.3e-10 Score=93.47 Aligned_cols=169 Identities=12% Similarity=0.223 Sum_probs=124.4
Q ss_pred CEEEEcCCCCCCCHHH-H--HHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 102 SEVYIGGIPHDASEHD-L--RDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~-l--~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
-..++.|+-..+..+- | -..|+.|-.+....++++.. +.-++++|+.|.....-.++-..-++..+.-+.|++...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3466777666655554 3 56777777777777776644 677899999998877776666554555555554444322
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
+.. -.+..
T Consensus 176 tsw------------------------------------------------------------------------edPsl 183 (290)
T KOG0226|consen 176 TSW------------------------------------------------------------------------EDPSL 183 (290)
T ss_pred ccc------------------------------------------------------------------------CCccc
Confidence 110 00001
Q ss_pred cccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 259 VSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
+.|. ....+||++-|...++++.|-..|.+|-.....++++++.+++++||+||.|.++.++.+|+..||
T Consensus 184 ~ew~----------~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~ 253 (290)
T KOG0226|consen 184 AEWD----------EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMN 253 (290)
T ss_pred ccCc----------cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhc
Confidence 1111 112689999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCccCCcEEEEEecc
Q 014086 339 KYELDGQALECSLAK 353 (431)
Q Consensus 339 ~~~~~g~~l~v~~a~ 353 (431)
|..++.|+|++.-..
T Consensus 254 gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 254 GKYVGSRPIKLRKSE 268 (290)
T ss_pred ccccccchhHhhhhh
Confidence 999999999886543
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=7.7e-11 Score=114.81 Aligned_cols=135 Identities=24% Similarity=0.328 Sum_probs=118.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
...++||+||++.+.+.+|...|..+|.+..+.+......++.+|+|||.|..++++.+|+.... ..+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh---------
Confidence 45689999999999999999999999999988888777889999999999999999999996544 44444
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCC
Q 014086 180 AKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNP 248 (431)
Q Consensus 180 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 248 (431)
+..++|.|.|+..|.+.++.++..+|. +...+++.. ..|+++|.++|.|.+...+.++...+...
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhh
Confidence 567899999999999999999999999 888886665 78999999999999999999887665543
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.94 E-value=7.6e-09 Score=85.28 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=71.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEec-CCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC---CcEEEEE
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVP-PAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD---GQALECS 350 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~-~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~---g~~l~v~ 350 (431)
.++|||.+||.++...+|..+|..|--.+...|. .++.++.++-+|||+|.+...|.+|+.+|||..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5899999999999999999999998655554443 33444445679999999999999999999999996 7899999
Q ss_pred eccCCCCCCCC
Q 014086 351 LAKPQADQKSA 361 (431)
Q Consensus 351 ~a~~~~~~~~~ 361 (431)
+|+........
T Consensus 114 lAKSNtK~kr~ 124 (284)
T KOG1457|consen 114 LAKSNTKRKRR 124 (284)
T ss_pred ehhcCcccccC
Confidence 99876665433
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.89 E-value=1.2e-08 Score=74.95 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=71.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcc--ccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC----CcEEEE
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHH--GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD----GQALEC 349 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~----g~~l~v 349 (431)
++|.|+|||...|.++|.+++... |....+.++.|..+..+.|||||.|.+++.|.+-...++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998653 67788999999999999999999999999999999999998886 467789
Q ss_pred EeccCCC
Q 014086 350 SLAKPQA 356 (431)
Q Consensus 350 ~~a~~~~ 356 (431)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9987544
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.80 E-value=4.5e-08 Score=71.96 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=68.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC----CeEee
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK----GKKIR 174 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~----g~~i~ 174 (431)
.+||.|+|+|...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+-.+..+|..|. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 379999999999999999998865 377888999999999999999999999999999999999999875 45556
Q ss_pred ecccc
Q 014086 175 CSTSQ 179 (431)
Q Consensus 175 v~~~~ 179 (431)
|.+|.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=1.9e-08 Score=86.76 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
..++|+|.|||+.++.++|+++|..||.+..+.+-.++ +|++.|+|-|.|...++|.+|++.+++..+.|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 35789999999999999999999999999888887775 49999999999999999999999999999999999887654
Q ss_pred c
Q 014086 180 A 180 (431)
Q Consensus 180 ~ 180 (431)
.
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.79 E-value=8.9e-08 Score=82.64 Aligned_cols=83 Identities=28% Similarity=0.438 Sum_probs=75.7
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
..+|+|.|||+.|+.+||+++|..||.+..+-+..++.+.+ .|.|-|.|...++|.+|+..+||..++|+.+++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s-~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS-LGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC-CccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 37899999999999999999999999999999988887766 79999999999999999999999999999999988776
Q ss_pred CCCC
Q 014086 355 QADQ 358 (431)
Q Consensus 355 ~~~~ 358 (431)
....
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 5554
No 136
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.3e-08 Score=95.17 Aligned_cols=72 Identities=32% Similarity=0.504 Sum_probs=67.0
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
..+..+|+|-|||..++.++|+.+|+.||+|..|+..+.+ +|..||+|.+..+|++|++.||+..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4455899999999999999999999999999998887766 78999999999999999999999999999998
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=3.3e-09 Score=95.30 Aligned_cols=158 Identities=18% Similarity=0.327 Sum_probs=122.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc-cCCeEeeeccccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE-FKGKKIRCSTSQA 180 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~-~~g~~i~v~~~~~ 180 (431)
..+|++||.+.++..+|..+|...-.-.+-.++. -.||+||.+.+..-|.+|++.+++.. +.|+++.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3589999999999999999997642111111222 27899999999999999999999875 8899988865443
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCccc
Q 014086 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVS 260 (431)
Q Consensus 181 ~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~ 260 (431)
++
T Consensus 76 kk------------------------------------------------------------------------------ 77 (584)
T KOG2193|consen 76 KK------------------------------------------------------------------------------ 77 (584)
T ss_pred HH------------------------------------------------------------------------------
Confidence 21
Q ss_pred cCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC
Q 014086 261 WADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY 340 (431)
Q Consensus 261 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~ 340 (431)
..++.+-|+|+|...-|+.|..+...||.|..|..+..... .-..-|+|.+.+.+..||..|||.
T Consensus 78 ------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e---tavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 78 ------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE---TAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred ------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH---HHHHHHHHHHHHHHHHHHHhhcch
Confidence 11256889999999999999999999999998876443211 123457899999999999999999
Q ss_pred ccCCcEEEEEeccCCCCC
Q 014086 341 ELDGQALECSLAKPQADQ 358 (431)
Q Consensus 341 ~~~g~~l~v~~a~~~~~~ 358 (431)
.+....++|.|-......
T Consensus 143 Q~en~~~k~~YiPdeq~~ 160 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDEQNA 160 (584)
T ss_pred HhhhhhhhcccCchhhhh
Confidence 999999999987654443
No 138
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.71 E-value=6.7e-08 Score=67.13 Aligned_cols=70 Identities=26% Similarity=0.479 Sum_probs=48.7
Q ss_pred CEEEEcCCCCCCCHHHHHH----HhhccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 102 SEVYIGGIPHDASEHDLRD----FCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~----~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
+.|+|.|||.+.+...|+. ++..|| .|..|. .+.|+|.|.+.+.|.+|++.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999998877665 444664 777662 5789999999999999999999999999999999
Q ss_pred ccccc
Q 014086 177 TSQAK 181 (431)
Q Consensus 177 ~~~~~ 181 (431)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.70 E-value=2e-08 Score=86.96 Aligned_cols=80 Identities=25% Similarity=0.420 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
.+.+.+||+|+.+.+|.++|..+|+.||.|..|.|..++.+|.++|||||+|.+.+.+..+|. |++..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 357899999999999999999999999999999999999999999999999999999999996 9999999999999765
Q ss_pred c
Q 014086 179 Q 179 (431)
Q Consensus 179 ~ 179 (431)
.
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 5
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.67 E-value=3.9e-08 Score=91.86 Aligned_cols=78 Identities=24% Similarity=0.472 Sum_probs=67.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
...+|||+|||.+++..+|+++|+.||+|+...|......+++..||||+|.+.+++..||.+ +...|++++|.|+.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 345699999999999999999999999999988877543355559999999999999999965 578899999998753
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=9.2e-08 Score=82.92 Aligned_cols=81 Identities=27% Similarity=0.396 Sum_probs=76.3
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..+.+||+|+.+.+|.+.+...|+.||.|..|.|+.++..+.++||+||+|.+.+.+..|+. ||+..|.|+.+.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 34799999999999999999999999999999999999998889999999999999999998 99999999999999987
Q ss_pred CC
Q 014086 354 PQ 355 (431)
Q Consensus 354 ~~ 355 (431)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 55
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.62 E-value=3.2e-07 Score=63.83 Aligned_cols=71 Identities=24% Similarity=0.404 Sum_probs=49.2
Q ss_pred cEEEEecCCCCCCHHH----HHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEE
Q 014086 276 KAVYVKNLPRNVTQDQ----LKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECS 350 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~----L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~ 350 (431)
..|+|.|||.+.+... |++++..|| .|..|. .+.|+|.|.+.+.|.+|+..|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4799999999888754 567777886 576662 2679999999999999999999999999999999
Q ss_pred eccCCC
Q 014086 351 LAKPQA 356 (431)
Q Consensus 351 ~a~~~~ 356 (431)
|.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 985433
No 143
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.62 E-value=2.3e-08 Score=84.38 Aligned_cols=74 Identities=31% Similarity=0.401 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC--------CCCcc----eEEEEecCHHHHHHHHHHhCCCc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS--------SENKG----FAFVTFRNVELASKAIDKLNNTE 167 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--------g~~~g----~afV~f~~~e~a~~al~~l~~~~ 167 (431)
....||++|||+.+.-.-|+++|+.||.|-.|.+.....+ |.++. -+||+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4678999999999999999999999999999999887665 33333 37899999999999999999999
Q ss_pred cCCeEe
Q 014086 168 FKGKKI 173 (431)
Q Consensus 168 ~~g~~i 173 (431)
|+|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999753
No 144
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.61 E-value=1.3e-07 Score=83.31 Aligned_cols=81 Identities=27% Similarity=0.370 Sum_probs=73.6
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEE--------EEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcE
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITK--------VVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQA 346 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~ 346 (431)
.+.|||.|||.++|.+++.++|++||.|.. |+|.++.+|.. +|-|+|.|--.++...|+..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l-KGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL-KGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc-cCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 467999999999999999999999998774 88899888665 999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 014086 347 LECSLAKPQA 356 (431)
Q Consensus 347 l~v~~a~~~~ 356 (431)
|+|..|+-+.
T Consensus 213 ~rVerAkfq~ 222 (382)
T KOG1548|consen 213 LRVERAKFQM 222 (382)
T ss_pred EEEehhhhhh
Confidence 9999987433
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.60 E-value=5.4e-08 Score=82.07 Aligned_cols=82 Identities=16% Similarity=0.380 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+....+||.+.|..+++.+-|...|++|-.....++++++.||+++||+||.|.++.++..|+..++|..++.|.|..+.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cc
Q 014086 178 SQ 179 (431)
Q Consensus 178 ~~ 179 (431)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 43
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.58 E-value=1.7e-08 Score=89.96 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=126.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC---CCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS---SENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
..|-|.||.+.+|.+++..+|...|.|..+.|+.+... ......|||.|.+...+..|. .|.+.+|-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 47999999999999999999999999999999875432 234568999999999998887 78999988888877554
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCChhHHHHHHHHhCCCCcccCCCCCc
Q 014086 179 QAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHNHKCAEYSRQKMTNPNFKLGTNAPT 258 (431)
Q Consensus 179 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 258 (431)
... +-... .+|..++..-.-..+. ...| |.|...... .++..+..
T Consensus 87 ~~~-----------~~p~r--~af~~l~~~navprll---~pdg-------~Lp~~~~lt------------~~nh~p~a 131 (479)
T KOG4676|consen 87 GDE-----------VIPDR--FAFVELADQNAVPRLL---PPDG-------VLPGDRPLT------------KINHSPNA 131 (479)
T ss_pred CCC-----------CCccH--HHHHhcCccccccccc---CCCC-------ccCCCCccc------------cccCCccc
Confidence 321 11111 1333333200000000 0000 001000000 00000000
Q ss_pred cccCCCCCCCC----CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHH
Q 014086 259 VSWADPRNVDS----SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 259 ~~~~~~~~~~~----~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al 334 (431)
+ ...|..... ....-.++++|.+|+..+...++...|..+|.|.+.++..... .-+|.|.|........|+
T Consensus 132 i-lktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 132 I-LKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred e-ecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHH
Confidence 0 000100000 0011136899999999999999999999999998887754432 246779999998999998
Q ss_pred HhcCCCccCCcEEEEE
Q 014086 335 KNTEKYELDGQALECS 350 (431)
Q Consensus 335 ~~l~~~~~~g~~l~v~ 350 (431)
. ++|..+.-....+.
T Consensus 207 r-~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 207 R-SHGRERKRQHSRRA 221 (479)
T ss_pred H-hcchhhhhhhhhhh
Confidence 7 46666653333333
No 147
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=6.2e-08 Score=81.63 Aligned_cols=75 Identities=24% Similarity=0.425 Sum_probs=68.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
.++||++||+.+.+.+|..||..||.|..|.+.. ||+||+|.+..+|..|+..||+..|.|-.+.|.|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999988754 79999999999999999999999999988999999865
Q ss_pred CCC
Q 014086 356 ADQ 358 (431)
Q Consensus 356 ~~~ 358 (431)
...
T Consensus 74 ~~~ 76 (216)
T KOG0106|consen 74 RRG 76 (216)
T ss_pred ccc
Confidence 443
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.55 E-value=3.1e-07 Score=88.21 Aligned_cols=86 Identities=23% Similarity=0.325 Sum_probs=76.1
Q ss_pred CCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCC---CCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEE
Q 014086 272 ASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAK---PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALE 348 (431)
Q Consensus 272 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~---~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~ 348 (431)
...++.|||+||++.++++.|...|..||+|..|+|+..+ ...+.+.||||-|.+..+|.+|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4557899999999999999999999999999999987654 3344568999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 014086 349 CSLAKPQAD 357 (431)
Q Consensus 349 v~~a~~~~~ 357 (431)
+-|++...-
T Consensus 251 ~gWgk~V~i 259 (877)
T KOG0151|consen 251 LGWGKAVPI 259 (877)
T ss_pred ecccccccc
Confidence 999975544
No 149
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=6.6e-08 Score=79.65 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=72.2
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..++|||.|+...++++-|.++|-+.|.|..|.|+.++++.. + ||||.|.+.-...-|++.+||..+.++.|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~-k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ-K-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC-c-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 347999999999999999999999999999999999998877 3 99999999999999999999999999998887754
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=2.5e-07 Score=88.86 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCC---CCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEee
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD---SSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIR 174 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~ 174 (431)
++..++|||+||++.+++..|...|..||+|.+|+|+--+. ..+.+.|+||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 67789999999999999999999999999999999975432 346678999999999999999999999999999999
Q ss_pred ecccc
Q 014086 175 CSTSQ 179 (431)
Q Consensus 175 v~~~~ 179 (431)
+-|..
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98873
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.47 E-value=4.8e-07 Score=80.65 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=77.5
Q ss_pred CcccEEEEecCCCCCCHHHHHHHHhccccEE--------EEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 014086 273 SQVKAVYVKNLPRNVTQDQLKKLFEHHGRIT--------KVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (431)
Q Consensus 273 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g 344 (431)
....+|||-+||..+++.+|.++|.++|.|. .|.|.+++.+..+||-|.|.|.++..|+.|+.-+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3346899999999999999999999999876 37788899999999999999999999999999999999999
Q ss_pred cEEEEEeccCCCC
Q 014086 345 QALECSLAKPQAD 357 (431)
Q Consensus 345 ~~l~v~~a~~~~~ 357 (431)
..|+|.+|.....
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999986664
No 152
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.41 E-value=3.9e-06 Score=74.07 Aligned_cols=75 Identities=13% Similarity=0.200 Sum_probs=66.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccc--cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHG--RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
..++||+||-+.+|++||.+.+...| .|.+++++.++.++++||||+|...+..+.++.++.|-.+.|.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 36999999999999999999988776 4778899999999999999999999999999999999988998865544
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=78.45 Aligned_cols=84 Identities=24% Similarity=0.449 Sum_probs=77.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVT--------EVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
....+|||.+||..+++.+|.++|.+||.|. .|+|.+++.|+++|+-|.|.|.+.-.|+.|+..+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3467899999999999999999999999885 58889999999999999999999999999999999999999
Q ss_pred eEeeeccccccc
Q 014086 171 KKIRCSTSQAKY 182 (431)
Q Consensus 171 ~~i~v~~~~~~~ 182 (431)
..|+|..+..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998877554
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.24 E-value=3.3e-06 Score=63.81 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=45.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC-----CCccCCcEEEEE
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE-----KYELDGQALECS 350 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~-----~~~~~g~~l~v~ 350 (431)
..|+|.+++..++.++|+++|+.||.|.+|.+.+.. ..|||.|.+.+.|+.|+..+. +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 478999999999999999999999999999998754 479999999999999998764 345667666665
Q ss_pred ec
Q 014086 351 LA 352 (431)
Q Consensus 351 ~a 352 (431)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=4.1e-06 Score=63.33 Aligned_cols=59 Identities=27% Similarity=0.468 Sum_probs=39.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~ 166 (431)
+.|+|.+++..++.++|+++|+.||.|..|.+.+. ...|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 57899999999999999999999999999998664 447999999999999999877644
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.10 E-value=3.8e-05 Score=67.97 Aligned_cols=76 Identities=16% Similarity=0.369 Sum_probs=67.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSIG--EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
-.+||+||-|.+|.++|.+.+...| .+.+++++.++.+|.+||||.|-..+..+.++.++.|-...|+|..-.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3689999999999999999998876 578889999999999999999999999999999999999999987666643
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=1.4e-05 Score=70.34 Aligned_cols=90 Identities=19% Similarity=0.473 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCCCHHH----H--HHHhhccCCeEEEEEeeCCCC-CCCcce--EEEEecCHHHHHHHHHHhCCCccCC
Q 014086 100 HGSEVYIGGIPHDASEHD----L--RDFCQSIGEVTEVRIMKGKDS-SENKGF--AFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~----l--~~~f~~~G~v~~v~i~~~~~~-g~~~g~--afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
...-|||-+||+.+..++ | .++|.+||.|..|.+-+...+ ..-.+. .||+|.+.++|.+||...+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 445689999999877766 2 479999999998877553211 111222 4999999999999999999999999
Q ss_pred eEeeeccccccc-cccccCC
Q 014086 171 KKIRCSTSQAKY-RLFIGNI 189 (431)
Q Consensus 171 ~~i~v~~~~~~~-~l~v~~l 189 (431)
|.|+..+...+. +.|++|+
T Consensus 193 r~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred ceEeeecCchHHHHHHHcCC
Confidence 999998877652 3444443
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.95 E-value=3.2e-05 Score=68.13 Aligned_cols=80 Identities=20% Similarity=0.437 Sum_probs=64.1
Q ss_pred ccEEEEecCCCCCCHHHH------HHHHhccccEEEEEecCCCCCC-CcCCE--EEEEeCCHHHHHHHHHhcCCCccCCc
Q 014086 275 VKAVYVKNLPRNVTQDQL------KKLFEHHGRITKVVVPPAKPGQ-EKNRI--GFVHFAERSSAMKALKNTEKYELDGQ 345 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L------~~~F~~~G~v~~v~i~~~~~~~-~~rg~--afV~F~~~~~A~~Al~~l~~~~~~g~ 345 (431)
..-+||-+||..+-.+++ .++|.+||.|..|.|-+..... ...+. .||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 357899999988766652 5899999999999887665221 11232 39999999999999999999999999
Q ss_pred EEEEEeccC
Q 014086 346 ALECSLAKP 354 (431)
Q Consensus 346 ~l~v~~a~~ 354 (431)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998753
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.84 E-value=4.9e-05 Score=49.49 Aligned_cols=53 Identities=21% Similarity=0.501 Sum_probs=43.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHH
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al 160 (431)
++.|-|.+.+.+..+ .+..+|..||.|..+.+- ....+.||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 367899999988765 455699999999998885 23668999999999999986
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.82 E-value=0.00027 Score=64.67 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=67.8
Q ss_pred CcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCC---C---CCCCc------
Q 014086 249 NFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPA---K---PGQEK------ 316 (431)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~---~---~~~~~------ 316 (431)
.+.+..-.-.|....+-........++++|.+.|||.+-.-+.|.+||+.||.|..|+|..- . .+..+
T Consensus 205 kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~ 284 (484)
T KOG1855|consen 205 KLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQ 284 (484)
T ss_pred eEEEccCCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhh
Confidence 33444444445555555444455567899999999999888999999999999999999765 2 11111
Q ss_pred -CCEEEEEeCCHHHHHHHHHhcCC
Q 014086 317 -NRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 317 -rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
+-+|||+|...+.|.+|.+.||.
T Consensus 285 tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 285 TKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred hhhhhhhhhhhhHHHHHHHHhhch
Confidence 45799999999999999998753
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.82 E-value=1.2e-05 Score=72.29 Aligned_cols=79 Identities=24% Similarity=0.525 Sum_probs=72.3
Q ss_pred CEEE-EcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 102 SEVY-IGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 102 ~~l~-V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
.++| |+||+..++.++|+.+|..+|.|..+++..+..++.++|||||.|.+...+.+++.. ....+.++++.+....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999966 78889999999988765
Q ss_pred c
Q 014086 181 K 181 (431)
Q Consensus 181 ~ 181 (431)
.
T Consensus 264 ~ 264 (285)
T KOG4210|consen 264 R 264 (285)
T ss_pred C
Confidence 4
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=9.3e-05 Score=48.17 Aligned_cols=52 Identities=23% Similarity=0.471 Sum_probs=42.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHH
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKAL 334 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al 334 (431)
+.|-|.+.+....+. ++..|..||.|..+.+... ..+.||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 578899998776654 4558889999999998732 368999999999999985
No 163
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.76 E-value=1.8e-05 Score=67.22 Aligned_cols=71 Identities=18% Similarity=0.411 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCC--------CCcCC----EEEEEeCCHHHHHHHHHhcCCCccC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG--------QEKNR----IGFVHFAERSSAMKALKNTEKYELD 343 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~--------~~~rg----~afV~F~~~~~A~~Al~~l~~~~~~ 343 (431)
..||+++||+.+....||++|+.||.|-+|.+-+.... +.+++ -|+|+|.+...|.++...|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 58999999999999999999999999999999876544 11122 3789999999999999999999999
Q ss_pred CcE
Q 014086 344 GQA 346 (431)
Q Consensus 344 g~~ 346 (431)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=9.4e-05 Score=69.85 Aligned_cols=75 Identities=27% Similarity=0.359 Sum_probs=63.2
Q ss_pred cEEEEecCCCCC--C----HHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccC-CcEEE
Q 014086 276 KAVYVKNLPRNV--T----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELD-GQALE 348 (431)
Q Consensus 276 ~~l~V~nLp~~~--t----~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~-g~~l~ 348 (431)
.+|+|.|+|--- . ..-|..+|+++|+|..+.++.+..++. +||.|++|.+..+|..|+..|||+.|+ .+++.
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt-kG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT-KGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe-eeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 689999998532 2 245578899999999999999998885 999999999999999999999999987 56666
Q ss_pred EEe
Q 014086 349 CSL 351 (431)
Q Consensus 349 v~~ 351 (431)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 644
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.54 E-value=0.00049 Score=51.13 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=51.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEE-ecCCC------CCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc-EE
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVV-VPPAK------PGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-AL 347 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-i~~~~------~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~-~l 347 (431)
+.|.|-+.|.. ....|.+.|++||.|.+.. +.++. ......++..|+|.++.+|.+||. -||..|.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 57889999888 5567778899999998875 22211 011124689999999999999997 599999885 45
Q ss_pred EEEecc
Q 014086 348 ECSLAK 353 (431)
Q Consensus 348 ~v~~a~ 353 (431)
-|.+++
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577764
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.48 E-value=0.0003 Score=60.07 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=79.7
Q ss_pred HHHHHHHHhCCCccCCeEeeeccccccccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecCCCCCCCcceEEeecCC
Q 014086 155 LASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDMKNSSNNRGFAFIEYHN 234 (431)
Q Consensus 155 ~a~~al~~l~~~~~~g~~i~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~~~~~~~~g~~fv~f~~ 234 (431)
-|..|...|++....|+.++|.++.. ..|+|.||...++.+.+.+.|+.||+ |....++.| ..++..+-++|.|.+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 35566667899999999999999998 99999999999999999999999999 777777776 578888899999999
Q ss_pred hhHHHHHHHHhCCC
Q 014086 235 HKCAEYSRQKMTNP 248 (431)
Q Consensus 235 ~~~a~~a~~~~~~~ 248 (431)
...+..|...++..
T Consensus 82 k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 82 KPNARKAARRCREG 95 (275)
T ss_pred chhHHHHHHHhccC
Confidence 99999999888643
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.45 E-value=0.0011 Score=56.66 Aligned_cols=104 Identities=23% Similarity=0.343 Sum_probs=79.9
Q ss_pred hHHHHHHHHhCCCCcccCCCCCccccCCCCCCCCCCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCC
Q 014086 236 KCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDSSGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE 315 (431)
Q Consensus 236 ~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~ 315 (431)
.-|..|...|.+. ...++.+.+.++.. ..|+|.||...++.+.|.+.|+.||.|....+..|..+..
T Consensus 5 t~ae~ak~eLd~~--~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~ 71 (275)
T KOG0115|consen 5 TLAEIAKRELDGR--FPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKP 71 (275)
T ss_pred cHHHHHHHhcCCC--CCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccc
Confidence 3456666667665 44577777777654 4799999999999999999999999999877777766655
Q ss_pred cCCEEEEEeCCHHHHHHHHHhcCC----CccCCcEEEEEecc
Q 014086 316 KNRIGFVHFAERSSAMKALKNTEK----YELDGQALECSLAK 353 (431)
Q Consensus 316 ~rg~afV~F~~~~~A~~Al~~l~~----~~~~g~~l~v~~a~ 353 (431)
.+-++|.|...-.|.+|++..+- ....+++.-|....
T Consensus 72 -t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 72 -TREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred -cccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 57899999999999999998752 33445666665543
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.45 E-value=0.00035 Score=66.51 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCCcccEEEEecCCCCCCHHHHHHHHh-ccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc---CCcE
Q 014086 271 GASQVKAVYVKNLPRNVTQDQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL---DGQA 346 (431)
Q Consensus 271 ~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~---~g~~ 346 (431)
....+..|+|.||-.-.|.-+|+.++. .+|.|....| |+. +-.|||.|.+.++|.+.+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445578999999999999999999998 5566666633 321 35699999999999999999999887 5789
Q ss_pred EEEEeccCCCCC
Q 014086 347 LECSLAKPQADQ 358 (431)
Q Consensus 347 l~v~~a~~~~~~ 358 (431)
|.+.|+......
T Consensus 514 L~adf~~~deld 525 (718)
T KOG2416|consen 514 LIADFVRADELD 525 (718)
T ss_pred eEeeecchhHHH
Confidence 999998765544
No 169
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.42 E-value=0.00063 Score=53.65 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=46.5
Q ss_pred HHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 290 DQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
..|.+.|..||.|.-||+..+ .-+|+|.+-+.|.+|+. ++|..++|+.|+|++.+|.=.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE------
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHH
Confidence 367788899999998888764 48999999999999996 899999999999999876544
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00057 Score=64.74 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=62.0
Q ss_pred CCCEEEEcCCCCC--CCH----HHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccC-CeE
Q 014086 100 HGSEVYIGGIPHD--ASE----HDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFK-GKK 172 (431)
Q Consensus 100 ~~~~l~V~nLp~~--~t~----~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~-g~~ 172 (431)
-.+.|+|-|+|.- ... .-|..+|+++|+|..+.+..+..+| .+||.|++|.+..+|..|++.|||..|. .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3578999999853 222 2356789999999999999887755 8999999999999999999999998875 455
Q ss_pred eeec
Q 014086 173 IRCS 176 (431)
Q Consensus 173 i~v~ 176 (431)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6553
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.38 E-value=0.00016 Score=66.03 Aligned_cols=68 Identities=26% Similarity=0.370 Sum_probs=56.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeC---CCC--CCC--------cceEEEEecCHHHHHHHHHHhCC
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKG---KDS--SEN--------KGFAFVTFRNVELASKAIDKLNN 165 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~--g~~--------~g~afV~f~~~e~a~~al~~l~~ 165 (431)
..+++|.+.|||.+-..+.|.++|+.+|.|..|+|+.- +.+ +.+ +-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36899999999999999999999999999999999876 222 222 45799999999999999987654
Q ss_pred C
Q 014086 166 T 166 (431)
Q Consensus 166 ~ 166 (431)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 172
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.30 E-value=0.00026 Score=67.39 Aligned_cols=77 Identities=18% Similarity=0.274 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc---CCeEee
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF---KGKKIR 174 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~---~g~~i~ 174 (431)
+.+..|+|.||-.-.|.-+|+.++. .+|.|...+|- +-+..|||.|.+.++|.....+|||..| +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD------kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD------KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH------HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3567899999999999999999998 67888888552 2377899999999999999999999987 578888
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
+.|....
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 8887643
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.29 E-value=0.0011 Score=49.25 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=52.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCC-------CCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeE
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGK-------DSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKK 172 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~ 172 (431)
..+.|.|-+.|+. ....|.++|++||.|.+..-.... ..-.......|+|.++.+|.+|| ..||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 3578999999998 556788999999999877511000 00112567899999999999999 57999999865
Q ss_pred ee-ecccc
Q 014086 173 IR-CSTSQ 179 (431)
Q Consensus 173 i~-v~~~~ 179 (431)
+- |.++.
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 53 55553
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.26 E-value=0.00084 Score=58.35 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=51.9
Q ss_pred HHHHHHHHhccccEEEEEecCCCCCCCcC-CEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 289 QDQLKKLFEHHGRITKVVVPPAKPGQEKN-RIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 289 ~~~L~~~F~~~G~v~~v~i~~~~~~~~~r-g~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
+.+++.-+.+||.|.+|.|.......... ---||+|...++|.+|+-.|||+.|+||.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 35678889999999998887654221111 137999999999999999999999999999887754
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.25 E-value=0.00015 Score=62.09 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHHHh-ccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 290 DQLKKLFE-HHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 290 ~~L~~~F~-~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
++|...|+ +||.|..+.|-.+-..-. +|-+||.|...++|.+|+..|||..|.|++|++.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl-~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHL-VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhh-hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 899999986655443333 6889999999999999999999999999999998864
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.20 E-value=0.0014 Score=51.78 Aligned_cols=55 Identities=25% Similarity=0.392 Sum_probs=45.7
Q ss_pred HHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccc
Q 014086 117 DLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQA 180 (431)
Q Consensus 117 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~ 180 (431)
+|.+.|..||.|.-|+++.+ .-+|+|.+-..|.+|+ .++|..+.|+.|+|+...+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 67788999999998988743 5899999999999999 5999999999999987554
No 177
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0016 Score=61.43 Aligned_cols=64 Identities=28% Similarity=0.343 Sum_probs=59.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhh-ccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~ 162 (431)
...+||||++||--++.++|..+|. -||-|..+-|-.|++-+.++|-|-|+|.+..+-.+||.+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3578999999999999999999998 699999999999988899999999999999999999964
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.08 E-value=0.00077 Score=60.99 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCC---cCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQE---KNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~---~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
..|.|.||.+++|.++++.+|...|.|..++|+....... ....|||.|.+...+..|.. |.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4899999999999999999999999999999988553322 23489999999999999875 6777777888877665
Q ss_pred c
Q 014086 353 K 353 (431)
Q Consensus 353 ~ 353 (431)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.02 E-value=0.00031 Score=60.14 Aligned_cols=63 Identities=27% Similarity=0.405 Sum_probs=52.4
Q ss_pred HHHHHHhh-ccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 116 HDLRDFCQ-SIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 116 ~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
++|...|. +||.|+.+.+..+.. -.-.|-+||.|...++|.+|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45555555 899999998876643 4568899999999999999999999999999999887654
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.77 E-value=0.0043 Score=54.07 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=56.4
Q ss_pred EEEEcCC--CCCCC---HHHHHHHhhccCCeEEEEEeeCCCCCCC-cceEEEEecCHHHHHHHHHHhCCCccCCeEeeec
Q 014086 103 EVYIGGI--PHDAS---EHDLRDFCQSIGEVTEVRIMKGKDSSEN-KGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCS 176 (431)
Q Consensus 103 ~l~V~nL--p~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~g~~-~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~ 176 (431)
.|.++|. +-.+. +.++++-+.+||.|..|.|...+.---. .--.||+|...++|.+|+-.|||..|+||.++..
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 3555554 22333 3567889999999999998876432111 2237999999999999999999999999998765
Q ss_pred cc
Q 014086 177 TS 178 (431)
Q Consensus 177 ~~ 178 (431)
+.
T Consensus 363 Fy 364 (378)
T KOG1996|consen 363 FY 364 (378)
T ss_pred ec
Confidence 53
No 181
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.56 E-value=0.0079 Score=59.61 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=8.9
Q ss_pred cCHHHHHHHHHHhCCCc
Q 014086 151 RNVELASKAIDKLNNTE 167 (431)
Q Consensus 151 ~~~e~a~~al~~l~~~~ 167 (431)
...-.+.+||+++=+..
T Consensus 207 k~~~eiIrClka~mNn~ 223 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNK 223 (1102)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 33456666666544333
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.50 E-value=0.016 Score=40.76 Aligned_cols=59 Identities=19% Similarity=0.342 Sum_probs=43.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCC
Q 014086 98 PPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNN 165 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~ 165 (431)
|......+|. +|......||.++|+.||.|.--.| - -..|||.....+.|..|+..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~-------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-N-------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-C-------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-c-------CCcEEEEeecHHHHHHHHHHhcc
Confidence 3344556666 9999999999999999999875544 2 34699999999999999987653
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.29 E-value=0.027 Score=37.59 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=44.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcc---ccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhc
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHH---GRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNT 337 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~---G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l 337 (431)
..|+|+|+ ..++.++|+.+|..| .....|..+.|. -|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 58999999 458889999999998 124567777664 5889999999999999865
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.26 E-value=0.027 Score=39.66 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=40.8
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
...+|. .|..+...||.++|+.||.|. |..+.+ .-|||...+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 455666 999999999999999999854 445544 369999999999999998775
No 185
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.014 Score=55.86 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEeeCCC----------CCC---------------------
Q 014086 98 PPHGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKGKD----------SSE--------------------- 141 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~~----------~g~--------------------- 141 (431)
...+++|-|.||.|+ +...+|.-+|+.| |.|.+|.|+.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345789999999998 8999999999987 6899999865422 111
Q ss_pred ----------------CcceEEEEecCHHHHHHHHHHhCCCccC--CeEeeecc
Q 014086 142 ----------------NKGFAFVTFRNVELASKAIDKLNNTEFK--GKKIRCST 177 (431)
Q Consensus 142 ----------------~~g~afV~f~~~e~a~~al~~l~~~~~~--g~~i~v~~ 177 (431)
.--||.|+|.+.+.|.+..+.++|..+. +..|.+++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1237999999999999999999999876 44444443
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.11 E-value=0.037 Score=36.93 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=43.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc---CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHh
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSI---GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKL 163 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l 163 (431)
..|+|+++. +.+.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 569999984 48888999999998 234567777653 4889999999999999754
No 187
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.05 E-value=0.0081 Score=60.48 Aligned_cols=76 Identities=13% Similarity=0.302 Sum_probs=67.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC--eEeeec
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG--KKIRCS 176 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g--~~i~v~ 176 (431)
-..+.+|+++|+..+....|...|..||.|..|.+-.. ..||||.|.+...++.|...+.+..|+| ++|+|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 45678999999999999999999999999999887442 6699999999999999999999999986 678888
Q ss_pred cccc
Q 014086 177 TSQA 180 (431)
Q Consensus 177 ~~~~ 180 (431)
++..
T Consensus 527 la~~ 530 (975)
T KOG0112|consen 527 LASP 530 (975)
T ss_pred cccC
Confidence 7764
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.02 E-value=0.015 Score=48.55 Aligned_cols=81 Identities=10% Similarity=0.067 Sum_probs=51.2
Q ss_pred cEEEEecCCCCCCHHHHHHHHhc-cccE---EEEE--ecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC-----
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEH-HGRI---TKVV--VPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG----- 344 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~-~G~v---~~v~--i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g----- 344 (431)
.+|.|++||+++|++++++.++. ++.. ..+. ..........-.-|||.|.+.+++..-...++|+.|-+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 68999999999999999997776 5554 2333 22211111112359999999999999999999977743
Q ss_pred cEEEEEeccCCC
Q 014086 345 QALECSLAKPQA 356 (431)
Q Consensus 345 ~~l~v~~a~~~~ 356 (431)
.+..|.+|--+.
T Consensus 88 ~~~~VE~Apyqk 99 (176)
T PF03467_consen 88 YPAVVEFAPYQK 99 (176)
T ss_dssp EEEEEEE-SS--
T ss_pred cceeEEEcchhc
Confidence 356777776433
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.95 E-value=0.0022 Score=57.47 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEeeCCC--CC-CCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 100 HGSEVYIGGIPHDASEHDLR---DFCQSIGEVTEVRIMKGKD--SS-ENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~--~g-~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
....+||-+|+.....+.+. .+|.+||.|..|.+.++.. .+ ....-+||+|...++|..||...+|..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 44668899999886555543 4899999999999888652 11 112238999999999999999999999999998
Q ss_pred eecccccc
Q 014086 174 RCSTSQAK 181 (431)
Q Consensus 174 ~v~~~~~~ 181 (431)
+..+...+
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88776654
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.89 E-value=0.025 Score=47.47 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=47.1
Q ss_pred CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcC--CCccCCcEEEEEeccCCCC
Q 014086 288 TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTE--KYELDGQALECSLAKPQAD 357 (431)
Q Consensus 288 t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~--~~~~~g~~l~v~~a~~~~~ 357 (431)
....|+++|..|+.+..+..++.- +-..|.|.+.++|.+|...|+ +..|.|..|+|.|+.+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 457899999999988877776654 458999999999999999999 9999999999999965443
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.81 E-value=0.057 Score=42.17 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=55.4
Q ss_pred cccEEEEecCCCCCC-HHHH---HHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 274 QVKAVYVKNLPRNVT-QDQL---KKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t-~~~L---~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
+..+|.|+=|..++. .+|| ...++.||+|.+|.+.- |--|.|.|.+..+|-+|+.+++. ...|..+.+
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 346888877666552 3444 45567899999997743 34799999999999999999877 677899999
Q ss_pred Eecc
Q 014086 350 SLAK 353 (431)
Q Consensus 350 ~~a~ 353 (431)
+|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8864
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.72 E-value=0.059 Score=42.08 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=54.9
Q ss_pred CCCCCEEEEcCCCCCC----CHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 98 PPHGSEVYIGGIPHDA----SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 98 ~~~~~~l~V~nLp~~~----t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
.+.-.||.|+=|..++ +...+-..++.||+|.+|.++- +..|.|.|.+..+|.+|+.+.+. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 3445677777665553 3344666778999999999863 55799999999999999987665 5667777
Q ss_pred eecccc
Q 014086 174 RCSTSQ 179 (431)
Q Consensus 174 ~v~~~~ 179 (431)
.+.+-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 776543
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.41 E-value=0.2 Score=38.05 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=51.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g 344 (431)
..+.+...|+.++..+|..+.+.+- .|..++|+++... ++-.++++|.+.++|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555566667777877766664 4778999887643 34678999999999999999999998875
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.37 E-value=0.017 Score=48.37 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-cCCe---EEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQS-IGEV---TEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v---~~v~i~~~~~~--g~~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
....|.||+||+.+|++++.+.++. ++.- ..+.-.....+ -....-|||.|.+.+++......++|..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4578999999999999999987776 5555 33332122111 112345999999999999999999987764
No 195
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.36 E-value=0.056 Score=36.71 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 285 RNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 285 ~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
..++-++|+..+..|+ ..+|..++ .|| ||.|.+..+|++++...+++.+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~---~~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR---WDRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC---cceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3578899999999994 34444554 354 89999999999999999998887776654
No 196
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.12 E-value=0.016 Score=53.33 Aligned_cols=77 Identities=23% Similarity=0.310 Sum_probs=59.0
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCC-ccCCcEEEEEeccC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKY-ELDGQALECSLAKP 354 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~-~~~g~~l~v~~a~~ 354 (431)
..||++||...++..+|..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|. .+.|+++.|...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4699999999999999999997641111111111 2489999999999999999999974 57799999988766
Q ss_pred CCCC
Q 014086 355 QADQ 358 (431)
Q Consensus 355 ~~~~ 358 (431)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 5543
No 197
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.95 E-value=0.029 Score=56.26 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=65.8
Q ss_pred EEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCcc--CCcEEEEEeccCC
Q 014086 278 VYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYEL--DGQALECSLAKPQ 355 (431)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~--~g~~l~v~~a~~~ 355 (431)
.++.|.+-..+-.-|..+|+.||.|.+++.+++- ..|.|.|.+.+.|..|+.+|+|+.+ .|-+.+|.+|+.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555567888999999999999999998875 6899999999999999999999876 4889999999987
Q ss_pred CCCCCC
Q 014086 356 ADQKSA 361 (431)
Q Consensus 356 ~~~~~~ 361 (431)
......
T Consensus 375 ~~~ep~ 380 (1007)
T KOG4574|consen 375 PMYEPP 380 (1007)
T ss_pred ccccCC
Confidence 776554
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.68 E-value=0.5 Score=45.52 Aligned_cols=69 Identities=14% Similarity=0.311 Sum_probs=55.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhc--cccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC--CccCCcEEEEEe
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK--YELDGQALECSL 351 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~--~~~~g~~l~v~~ 351 (431)
+.|.++-||..+..++++.||.. |-.+++|.+-.+. + =||+|.+..+|+.|...|.. ..|.|++|..++
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 56788999999999999999965 7788888876553 2 49999999999999988763 467788775544
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.68 E-value=0.28 Score=37.34 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=48.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC
Q 014086 102 SEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 102 ~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
..+-+-..|+-++.++|..+.+.+ ..|..++|+++.. .++-.+.++|.+.++|.......||..+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444445556666676666655 4678899988743 366678999999999999999999988753
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.67 E-value=0.21 Score=35.06 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHhccc-----cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEec
Q 014086 285 RNVTQDQLKKLFEHHG-----RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLA 352 (431)
Q Consensus 285 ~~~t~~~L~~~F~~~G-----~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a 352 (431)
..++..+|..++...+ .|-.|.|.. .|+||+-.. +.|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678888888887653 377888865 479999844 5888999999999999999999875
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.53 E-value=0.016 Score=52.11 Aligned_cols=80 Identities=23% Similarity=0.449 Sum_probs=61.8
Q ss_pred cEEEEecCCCCCCHHHH---HHHHhccccEEEEEecCCCC--CCC-cCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 276 KAVYVKNLPRNVTQDQL---KKLFEHHGRITKVVVPPAKP--GQE-KNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L---~~~F~~~G~v~~v~i~~~~~--~~~-~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
.-+||-+|+..+..+.+ ...|.+||.|..|.+..+.. ... .-.-++|+|...++|..||...+|....|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45778888877655544 36789999999999988762 111 1124799999999999999999999999999888
Q ss_pred EeccCC
Q 014086 350 SLAKPQ 355 (431)
Q Consensus 350 ~~a~~~ 355 (431)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 877643
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.52 E-value=0.025 Score=52.94 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=62.2
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 100 HGSEVYIGGIPHD-ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 100 ~~~~l~V~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
+.+.|-+.-.|+. -|-.+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|. +.++..|++|.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 4456667777776 466789999999999999988443 456999999999998888 58999999999999887
Q ss_pred cccc
Q 014086 179 QAKY 182 (431)
Q Consensus 179 ~~~~ 182 (431)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 7644
No 203
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.30 E-value=0.046 Score=53.48 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=64.4
Q ss_pred CCCCcccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEE
Q 014086 270 SGASQVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALEC 349 (431)
Q Consensus 270 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v 349 (431)
....+..++||+|+...+..+-++.+...||.|..+.... |||..|..+.-+.+|+..++-..++|..|.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 4445568999999999999999999999999988876543 8999999999999999999998999988877
Q ss_pred Eec
Q 014086 350 SLA 352 (431)
Q Consensus 350 ~~a 352 (431)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.19 E-value=0.092 Score=50.29 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhc--cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC--ccCCeEeee
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT--EFKGKKIRC 175 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~--~~~g~~i~v 175 (431)
.|.|.|+-||..+..++|+.+|+. |-++.+|.+-.+. -=||+|.+..+|+.|.+.|... .|.|+.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 456789999999999999999975 8889999986653 2699999999999999877643 477777643
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.13 E-value=0.032 Score=52.26 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=59.9
Q ss_pred cEEEEecCCCCC-CHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccC
Q 014086 276 KAVYVKNLPRNV-TQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKP 354 (431)
Q Consensus 276 ~~l~V~nLp~~~-t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~ 354 (431)
+.|-+.-.|+.. |.++|...|.+||.|..|.+-... -.|.|+|.+..+|-.|.. .++..|++|.|+|.|-.+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 455566666654 568999999999999999886541 358999999999977764 789999999999999887
Q ss_pred CC
Q 014086 355 QA 356 (431)
Q Consensus 355 ~~ 356 (431)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 44
No 206
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.07 E-value=0.13 Score=43.18 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=46.3
Q ss_pred CHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhC--CCccCCeEeeecccc
Q 014086 114 SEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLN--NTEFKGKKIRCSTSQ 179 (431)
Q Consensus 114 t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~--~~~~~g~~i~v~~~~ 179 (431)
....|+++|..|+.+..+..++. -+-..|.|.+.++|.+|...|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999999888765 3458999999999999999999 899999999998774
No 207
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.06 E-value=0.13 Score=45.52 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=56.2
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc-EEEEEecc
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALECSLAK 353 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~-~l~v~~a~ 353 (431)
..-|.|-++|.... .-|..+|++||.|+......+ -.+-+|.|.+.-+|.+||. -||+.|+|. .|-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 35677778877644 467788999999998776632 2589999999999999997 489888875 45677655
Q ss_pred CCCC
Q 014086 354 PQAD 357 (431)
Q Consensus 354 ~~~~ 357 (431)
.+..
T Consensus 269 Dksv 272 (350)
T KOG4285|consen 269 DKSV 272 (350)
T ss_pred CHHH
Confidence 4433
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.99 E-value=0.15 Score=47.68 Aligned_cols=68 Identities=9% Similarity=0.176 Sum_probs=58.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g 344 (431)
++.|+|-.+|..+|-.||..|+..|- .|.+|+|+++... ++-.++|+|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57999999999999999999998764 5889999995433 34578999999999999999999999875
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.46 E-value=0.28 Score=43.41 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=56.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe-eecccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI-RCSTSQ 179 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i-~v~~~~ 179 (431)
...|-|-++|+... .-|..+|++||.|++.... .+-.+-+|.|.+.-+|.+|| ..+|..|.|..+ -|..|.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 56788889888654 3577899999999887653 34668999999999999999 479999998754 355554
Q ss_pred c
Q 014086 180 A 180 (431)
Q Consensus 180 ~ 180 (431)
.
T Consensus 269 D 269 (350)
T KOG4285|consen 269 D 269 (350)
T ss_pred C
Confidence 3
No 210
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.15 E-value=0.034 Score=58.36 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=3.2
Q ss_pred HHHHhhc
Q 014086 118 LRDFCQS 124 (431)
Q Consensus 118 l~~~f~~ 124 (431)
|.++|+.
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 3445544
No 211
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=92.93 E-value=0.085 Score=55.55 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=10.4
Q ss_pred CCHHHHHHHhhccC
Q 014086 113 ASEHDLRDFCQSIG 126 (431)
Q Consensus 113 ~t~~~l~~~f~~~G 126 (431)
.|-++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 36688888888763
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.64 E-value=0.35 Score=45.37 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=60.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhcc-CCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSI-GEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
+.+..++.|.|--+|..+|-.||..|+..+ -.|.+++|+++.. .++-.+.|+|.+.++|....+.+||..|.-
T Consensus 69 ~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 69 KNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred ccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 334458999999999999999999999765 4689999999643 345568899999999999999999988763
No 213
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.62 E-value=2 Score=44.08 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHhcccc-----EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 285 RNVTQDQLKKLFEHHGR-----ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 285 ~~~t~~~L~~~F~~~G~-----v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
..++..+|-.++..-+. |-.|.|.. .|.||+- ....|...+..|++..+.|++|.|..+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIEL-PKGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEc-ChhhHHHHHHHhccccccCCceEEEECCCC
Confidence 46788888777765543 44566654 4789998 455688889999999999999999998643
No 214
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=0.25 Score=45.42 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=46.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF 168 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~ 168 (431)
...|-|.++|.....+||...|..|+. =.+|..+-+ ..||-.|.+...|..|| .+....+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaL-t~kh~~l 451 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEAL-TLKHDWL 451 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHh-hccCceE
Confidence 467999999999999999999999864 345555543 36999999999999999 4543333
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.86 E-value=0.11 Score=52.43 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=58.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCcc--CCeEeeecccc
Q 014086 104 VYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEF--KGKKIRCSTSQ 179 (431)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~--~g~~i~v~~~~ 179 (431)
..+.|.+-..+-..|..+|++||.|.+++..++ -..|.|.|.+.+.|..|+++++|..+ -|-+.+|.++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 445556667778889999999999999999887 44699999999999999999999874 47778887765
No 216
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=91.86 E-value=1.2 Score=46.10 Aligned_cols=13 Identities=8% Similarity=0.186 Sum_probs=5.2
Q ss_pred EEeCCHHHHHHHH
Q 014086 322 VHFAERSSAMKAL 334 (431)
Q Consensus 322 V~F~~~~~A~~Al 334 (431)
|.|.=..+|.+||
T Consensus 1086 IklqIshEaAAcI 1098 (1282)
T KOG0921|consen 1086 IKLQISHEAAACI 1098 (1282)
T ss_pred eeEeccHHHHHHH
Confidence 4444333333333
No 217
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.08 E-value=0.15 Score=50.09 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=61.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecc
Q 014086 99 PHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCST 177 (431)
Q Consensus 99 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~ 177 (431)
+..-+|||+|+...+..+-++..+..||.|.++.... |+|..|.......+|+..++...++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567999999999999999999999999999887643 899999999999999988888888888776644
No 218
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=90.36 E-value=0.96 Score=46.81 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=23.2
Q ss_pred CcceEEEEecCHHHHHHHHHHhCCCccC
Q 014086 142 NKGFAFVTFRNVELASKAIDKLNNTEFK 169 (431)
Q Consensus 142 ~~g~afV~f~~~e~a~~al~~l~~~~~~ 169 (431)
-+||-||+=....++..||+-+-+....
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 5999999999999999999877655444
No 219
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=6.3 Score=37.50 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=6.5
Q ss_pred HHHHHHhhCC
Q 014086 198 LQKVVSEVGP 207 (431)
Q Consensus 198 l~~~f~~~g~ 207 (431)
|-.+|.-||+
T Consensus 247 lG~I~EiFGp 256 (483)
T KOG2236|consen 247 LGQIFEIFGP 256 (483)
T ss_pred chhhhhhhcc
Confidence 5566666776
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.44 E-value=0.41 Score=34.62 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=41.1
Q ss_pred EEEEecCHHHHHHHHHHhCCC-ccCCeEeee---------------ccccccccccccCCCCCCCHHHHHHHH
Q 014086 146 AFVTFRNVELASKAIDKLNNT-EFKGKKIRC---------------STSQAKYRLFIGNIPRNWGSEDLQKVV 202 (431)
Q Consensus 146 afV~f~~~e~a~~al~~l~~~-~~~g~~i~v---------------~~~~~~~~l~v~~lp~~~~~~~l~~~f 202 (431)
|.|+|....-|++.++.-... .+.+..+.| .....++++.+.+||..++++.|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999532211 244444433 334467889999999999999988754
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.54 E-value=2 Score=30.06 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=35.1
Q ss_pred CCCHHHHHHHhhccC-----CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccc
Q 014086 112 DASEHDLRDFCQSIG-----EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTS 178 (431)
Q Consensus 112 ~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~ 178 (431)
.++..+|..++...+ .|-.|.|. ..|+||+-... .|..+++.|++..+.|++|+|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477888888887664 46677775 34789988765 778888899999999999998754
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.26 E-value=2.8 Score=28.51 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=42.4
Q ss_pred CCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeee
Q 014086 112 DASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRC 175 (431)
Q Consensus 112 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v 175 (431)
.++-++|+..++.|+-. .| ..++ .| -||.|.+..+|++|....++..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I--~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RI--RDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eE--EecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46788999999999643 23 3332 33 489999999999999999999888777654
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=88.23 E-value=0.58 Score=38.33 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=57.8
Q ss_pred cEEEEecCCCCCC-----HHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCc-EEEE
Q 014086 276 KAVYVKNLPRNVT-----QDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQ-ALEC 349 (431)
Q Consensus 276 ~~l~V~nLp~~~t-----~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~-~l~v 349 (431)
..+.+.+++..+- ......+|.+|-......+++. .++..|.|.+++.|..|...++.+.|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777775542 2344567777766666666554 35678999999999999999999999998 8999
Q ss_pred EeccCCCCCC
Q 014086 350 SLAKPQADQK 359 (431)
Q Consensus 350 ~~a~~~~~~~ 359 (431)
-|+.+.....
T Consensus 85 yfaQ~~~~~~ 94 (193)
T KOG4019|consen 85 YFAQPGHPES 94 (193)
T ss_pred EEccCCCccc
Confidence 9998765543
No 224
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.86 E-value=2.5 Score=41.24 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=63.4
Q ss_pred cccEEEEecCCC-CCCHHHHHHHHhcc----ccEEEEEecCCCCC-----------------------------------
Q 014086 274 QVKAVYVKNLPR-NVTQDQLKKLFEHH----GRITKVVVPPAKPG----------------------------------- 313 (431)
Q Consensus 274 ~~~~l~V~nLp~-~~t~~~L~~~F~~~----G~v~~v~i~~~~~~----------------------------------- 313 (431)
.+++|-|.|+.+ .+...+|.-+|+.| |.|.+|.|.+...|
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 348999999997 47889999999876 58999998765422
Q ss_pred ------------CCcCCEEEEEeCCHHHHHHHHHhcCCCccC--CcEEEEEeccC
Q 014086 314 ------------QEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECSLAKP 354 (431)
Q Consensus 314 ------------~~~rg~afV~F~~~~~A~~Al~~l~~~~~~--g~~l~v~~a~~ 354 (431)
+..--||.|+|.+.+.|.+.....+|..|. +..|.++|-..
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 111137999999999999999999999886 56677777543
No 225
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=84.32 E-value=4 Score=42.38 Aligned_cols=7 Identities=43% Similarity=0.695 Sum_probs=2.7
Q ss_pred CCCcceE
Q 014086 222 SNNRGFA 228 (431)
Q Consensus 222 ~~~~g~~ 228 (431)
|+.++|+
T Consensus 899 g~q~~~~ 905 (1282)
T KOG0921|consen 899 GTQRKFA 905 (1282)
T ss_pred cchhhcc
Confidence 3333443
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=82.56 E-value=37 Score=30.59 Aligned_cols=156 Identities=15% Similarity=0.206 Sum_probs=92.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCCeeEEEEeecC------CCCCCCcceEEeecCChhHHHHH----HHHhCCCCc
Q 014086 181 KYRLFIGNIPRNWGSEDLQKVVSEVGPGVTGVELVKDM------KNSSNNRGFAFIEYHNHKCAEYS----RQKMTNPNF 250 (431)
Q Consensus 181 ~~~l~v~~lp~~~~~~~l~~~f~~~g~~i~~~~~~~~~------~~~~~~~g~~fv~f~~~~~a~~a----~~~~~~~~~ 250 (431)
.+.|...|+..+++-..+...|-.||+ |+++.++.+. ...........+.|-+...+..- ++.++.-..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 356788899999999999999999999 9999999874 12233345677888888877553 223322111
Q ss_pred ccCCCCCccccCCC-----C--CC---------------CCCCCCcccEEEEecCCCCCCHHHH-HHH---Hhccc----
Q 014086 251 KLGTNAPTVSWADP-----R--NV---------------DSSGASQVKAVYVKNLPRNVTQDQL-KKL---FEHHG---- 300 (431)
Q Consensus 251 ~~~~~~~~~~~~~~-----~--~~---------------~~~~~~~~~~l~V~nLp~~~t~~~L-~~~---F~~~G---- 300 (431)
.+....+.+.+..- . .. .-.....++.|.|.=- ..+..+++ .+. ...-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 22333333332210 0 00 0012234566776532 33333332 222 22222
Q ss_pred cEEEEEecCCCCC--CCcCCEEEEEeCCHHHHHHHHHhcC
Q 014086 301 RITKVVVPPAKPG--QEKNRIGFVHFAERSSAMKALKNTE 338 (431)
Q Consensus 301 ~v~~v~i~~~~~~--~~~rg~afV~F~~~~~A~~Al~~l~ 338 (431)
.|++|.|+..... .-++.||.++|-+..-|...+.-+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 3667877754432 2246799999999999999888765
No 227
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.50 E-value=1.5 Score=38.36 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=27.9
Q ss_pred cEEEEecCCCCC------------CHHHHHHHHhccccEEEEEecC
Q 014086 276 KAVYVKNLPRNV------------TQDQLKKLFEHHGRITKVVVPP 309 (431)
Q Consensus 276 ~~l~V~nLp~~~------------t~~~L~~~F~~~G~v~~v~i~~ 309 (431)
.+|++.+||..| ++..|+..|..||.|..|.|+.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 578888887543 6788999999999999998864
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.36 E-value=12 Score=33.23 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=35.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEE-EEEecCCCCCCCcCCEEEEEeCCH
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRIT-KVVVPPAKPGQEKNRIGFVHFAER 327 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~i~~~~~~~~~rg~afV~F~~~ 327 (431)
..-|+++|||.++...||+..+.+.+.+- ++...- .+|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 46799999999999999999998876432 333211 247799999874
No 229
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=75.84 E-value=1.3 Score=44.32 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=11.1
Q ss_pred EEEEeCCHHHHHHHHHhcCCCccC
Q 014086 320 GFVHFAERSSAMKALKNTEKYELD 343 (431)
Q Consensus 320 afV~F~~~~~A~~Al~~l~~~~~~ 343 (431)
-||...+.++-..|++.|-...+.
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK 647 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLK 647 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCC
Confidence 345555555555555444333333
No 230
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=75.38 E-value=4.6 Score=32.74 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=29.2
Q ss_pred EEEEecCCCC-CCHHHHHHHHhccccEEEEEecCCC
Q 014086 277 AVYVKNLPRN-VTQDQLKKLFEHHGRITKVVVPPAK 311 (431)
Q Consensus 277 ~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~i~~~~ 311 (431)
-|.|.|||.. .+++-|+.+.+.+|.+..+......
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 4778899976 6888999999999999998876554
No 231
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=74.63 E-value=5.5 Score=27.17 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=48.0
Q ss_pred HHHHHHhhccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
.+|.+-|..+| .+..|+-+..++++.+...-||+.....+-.. -++=..|+|++|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 46888899888 78899999988888888888898877654443 24556688999999876543
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=73.06 E-value=1.1 Score=39.29 Aligned_cols=68 Identities=26% Similarity=0.424 Sum_probs=46.8
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHHhhccCCeEEEEEeeC-----CCCCCCcce--------------EEEE
Q 014086 101 GSEVYIGGIPHD------------ASEHDLRDFCQSIGEVTEVRIMKG-----KDSSENKGF--------------AFVT 149 (431)
Q Consensus 101 ~~~l~V~nLp~~------------~t~~~l~~~f~~~G~v~~v~i~~~-----~~~g~~~g~--------------afV~ 149 (431)
..||++.+||-. -++.-|+..|..||.|..|.|..- .-+|+..|. |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 468999999842 356789999999999998887432 224554433 4466
Q ss_pred ecCHHHHHHHHHHhCCCcc
Q 014086 150 FRNVELASKAIDKLNNTEF 168 (431)
Q Consensus 150 f~~~e~a~~al~~l~~~~~ 168 (431)
|.....-..|+.+|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666677777776654
No 233
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.94 E-value=7.5 Score=26.67 Aligned_cols=63 Identities=10% Similarity=0.275 Sum_probs=48.3
Q ss_pred HHHHHHhhccC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccccc
Q 014086 116 HDLRDFCQSIG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAK 181 (431)
Q Consensus 116 ~~l~~~f~~~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~ 181 (431)
++|.+-|...| +|..|.-+..+.++.+...-||++....+...+ ++=..+.+..|.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46888888888 788888888887788888899999877664443 3456688999999876643
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.84 E-value=9.2 Score=33.88 Aligned_cols=48 Identities=15% Similarity=0.224 Sum_probs=36.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEeeCCCCCCCcceEEEEecCHH
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEV-TEVRIMKGKDSSENKGFAFVTFRNVE 154 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~e 154 (431)
.+-|+|+|||.++.-.+|+..+.+.+.+ .++... ...|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 4569999999999999999999887643 344432 24778999997743
No 235
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.71 E-value=5.7 Score=35.45 Aligned_cols=147 Identities=15% Similarity=0.235 Sum_probs=88.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCC-------CCCCcceEEEEecCHHHHHHH----HHHhC--CC
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKD-------SSENKGFAFVTFRNVELASKA----IDKLN--NT 166 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------~g~~~g~afV~f~~~e~a~~a----l~~l~--~~ 166 (431)
.+|.|.+.|+..+++-..+...|-+||+|++|.++.+.. ..+......+.|-+.+.+... |+.|. ..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999998751 123446788999998876543 22222 12
Q ss_pred ccCCeEeeecccc--------------------------------ccccccccCCCCCCCHHHH-HH---HHHhhCC---
Q 014086 167 EFKGKKIRCSTSQ--------------------------------AKYRLFIGNIPRNWGSEDL-QK---VVSEVGP--- 207 (431)
Q Consensus 167 ~~~g~~i~v~~~~--------------------------------~~~~l~v~~lp~~~~~~~l-~~---~f~~~g~--- 207 (431)
.+.-..|.+.+.. +.+.|.|.= ...+..+++ .+ ++..-+.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceE
Confidence 2344444443322 011222211 112222222 11 1111121
Q ss_pred CeeEEEEeecC-CCCCCCcceEEeecCChhHHHHHHHHhCC
Q 014086 208 GVTGVELVKDM-KNSSNNRGFAFIEYHNHKCAEYSRQKMTN 247 (431)
Q Consensus 208 ~i~~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 247 (431)
.+.++.++... ....-++.|+.++|-+-..|...+.-+..
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 35566666442 23455678899999999888887776664
No 236
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=72.52 E-value=1.6 Score=44.49 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=5.8
Q ss_pred ChhHHHHHHHHhC
Q 014086 234 NHKCAEYSRQKMT 246 (431)
Q Consensus 234 ~~~~a~~a~~~~~ 246 (431)
+..++..|+.++-
T Consensus 400 SA~D~v~al~ALL 412 (622)
T PF02724_consen 400 SASDVVYALTALL 412 (622)
T ss_pred eHHHHHHHHHHHh
Confidence 3444444444443
No 237
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=72.45 E-value=5.2 Score=28.97 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=39.4
Q ss_pred EEeecCChhHHHHHHHHhCCCCcccCCCCCccccCCCCCCCC-----CCCCcccEEEEecCCCCCCHHHHHHHH
Q 014086 228 AFIEYHNHKCAEYSRQKMTNPNFKLGTNAPTVSWADPRNVDS-----SGASQVKAVYVKNLPRNVTQDQLKKLF 296 (431)
Q Consensus 228 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~V~nLp~~~t~~~L~~~F 296 (431)
|.|+|....-|...++.-. ..+.++...+.+.......... ......++|.|.|||...+++.|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~-~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKK-HPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCE-EEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 5788888888877665432 1223333333222221111110 122345799999999999999999753
No 238
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=68.76 E-value=2.2 Score=42.87 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=4.9
Q ss_pred CCCCCHHHHHH
Q 014086 284 PRNVTQDQLKK 294 (431)
Q Consensus 284 p~~~t~~~L~~ 294 (431)
|..+|.++|..
T Consensus 553 ~l~vTledll~ 563 (822)
T KOG2141|consen 553 PLSVTLEDLLH 563 (822)
T ss_pred cccccHHHhhC
Confidence 33444444443
No 239
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=68.08 E-value=0.67 Score=44.68 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=52.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCC
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKG 170 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g 170 (431)
..++|||+|++++++-.+|..+++.+--+..+.+.....-.....+.+|+|+---...-|..+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 35789999999999999999999998766666654443334567789999987655555555666665543
No 240
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=67.18 E-value=3.7 Score=35.73 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=2.8
Q ss_pred EEEEecC
Q 014086 146 AFVTFRN 152 (431)
Q Consensus 146 afV~f~~ 152 (431)
+.|++.-
T Consensus 284 ~~ve~E~ 290 (303)
T KOG3064|consen 284 VHVEIEY 290 (303)
T ss_pred ceEEeeh
Confidence 3444433
No 241
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=65.08 E-value=17 Score=34.00 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=31.7
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhcc----CCeEEEEEeeC
Q 014086 100 HGSEVYIGGIPHD-ASEHDLRDFCQSI----GEVTEVRIMKG 136 (431)
Q Consensus 100 ~~~~l~V~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~ 136 (431)
.+.+|-|-||.|+ +...+|...|+.| |.|..|.|+..
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 5678999999998 8889999999987 68888988765
No 242
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=64.89 E-value=5.2 Score=33.01 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=55.2
Q ss_pred CCEEEEcCCCCCCC-----HHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCe-Eee
Q 014086 101 GSEVYIGGIPHDAS-----EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGK-KIR 174 (431)
Q Consensus 101 ~~~l~V~nLp~~~t-----~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~-~i~ 174 (431)
.+++.+.+++..+- ......+|.+|.+.....+++. .+..-|.|.+++.|..|.-.++...|.|. .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 35677777776532 2234567778877776666653 56678999999999999999999999988 777
Q ss_pred ecccccc
Q 014086 175 CSTSQAK 181 (431)
Q Consensus 175 v~~~~~~ 181 (431)
.-+++..
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7666643
No 243
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=63.93 E-value=9.5 Score=31.40 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCC-CCCcceEEEEecCHHHHHHHHHH
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDS-SENKGFAFVTFRNVELASKAIDK 162 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-g~~~g~afV~f~~~e~a~~al~~ 162 (431)
.+++|.. |.+...++|.++-+ |.+..|.+.+.... ...+|-.||+|.+.+.|.++++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3566666 44445555666656 78888887665431 26789999999999999998864
No 244
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=63.91 E-value=3.7 Score=41.96 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=7.6
Q ss_pred cCChhHHHHHHHHhCC
Q 014086 232 YHNHKCAEYSRQKMTN 247 (431)
Q Consensus 232 f~~~~~a~~a~~~~~~ 247 (431)
|...-+|..++..+..
T Consensus 395 y~~~lSA~D~v~al~A 410 (622)
T PF02724_consen 395 YRGKLSASDVVYALTA 410 (622)
T ss_pred CCCceeHHHHHHHHHH
Confidence 3444445555554443
No 245
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=63.38 E-value=7.1 Score=39.77 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=6.1
Q ss_pred EcCCCCCCCHHHHHH
Q 014086 106 IGGIPHDASEHDLRD 120 (431)
Q Consensus 106 V~nLp~~~t~~~l~~ 120 (431)
++.+|--++.++-..
T Consensus 960 ~~d~pvFAsaeey~h 974 (988)
T KOG2038|consen 960 LNDSPVFASAEEYAH 974 (988)
T ss_pred cccchhhhhHHHHHH
Confidence 344443334444333
No 246
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=61.34 E-value=38 Score=25.66 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCc--cCCeEeeeccccccccccc
Q 014086 109 IPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTE--FKGKKIRCSTSQAKYRLFI 186 (431)
Q Consensus 109 Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~--~~g~~i~v~~~~~~~~l~v 186 (431)
||+-++ .|.++|..-|+|.+|..+.. |.+ ..|+-.++|.. +.|+ |+|........++|
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------ypd----ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YPD----NDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cCC----chhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 777665 48899999999999876542 111 12333455543 5565 77776666666766
Q ss_pred cCCC---------CCCCHHHHHHHHHhh
Q 014086 187 GNIP---------RNWGSEDLQKVVSEV 205 (431)
Q Consensus 187 ~~lp---------~~~~~~~l~~~f~~~ 205 (431)
.+.| ..+|-.+++++|+.-
T Consensus 71 ~gTPsgnnv~F~PYTlT~~e~r~iF~Ep 98 (145)
T TIGR02542 71 QGTPSGNNVIFPPYTLTYNELRQIFREP 98 (145)
T ss_pred ecCCCCCceecCceeeeHHHHHHHHhhh
Confidence 6544 457888999999863
No 247
>COG4371 Predicted membrane protein [Function unknown]
Probab=60.97 E-value=19 Score=31.34 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=4.6
Q ss_pred CCCCCCCCCCC
Q 014086 394 GFGAAAFAQPL 404 (431)
Q Consensus 394 g~~~~~~~~~~ 404 (431)
+|++.+++.|.
T Consensus 82 ~Y~GGGfgfPf 92 (334)
T COG4371 82 GYSGGGFGFPF 92 (334)
T ss_pred CCCCCCcCcCe
Confidence 34444444443
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.52 E-value=5.6 Score=30.67 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=27.5
Q ss_pred EEEEecCCCC---------CCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHH
Q 014086 277 AVYVKNLPRN---------VTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSS 329 (431)
Q Consensus 277 ~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~ 329 (431)
++.|.|++.. .+-+.|++.|+.|..+. |+.+.+..+. +|+++|.|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh--~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGH--TGFAIVEFNKDWS 68 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEE--EEEEEEE--SSHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCC--cEEEEEEECCChH
Confidence 5677787654 35588999999998764 5555555433 5899999987443
No 249
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=60.26 E-value=3.7 Score=43.06 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=5.3
Q ss_pred CEEEEcCCCC
Q 014086 102 SEVYIGGIPH 111 (431)
Q Consensus 102 ~~l~V~nLp~ 111 (431)
+.+||--+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 4456655554
No 250
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.40 E-value=11 Score=29.10 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=29.6
Q ss_pred EEEEcCCCCC---------CCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCH-HHHHHHH
Q 014086 103 EVYIGGIPHD---------ASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNV-ELASKAI 160 (431)
Q Consensus 103 ~l~V~nLp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~-e~a~~al 160 (431)
++.|-|++.. .+.+.|++.|+.|.++. |+.+.++ ....|++.|+|.+. .--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 4566666543 35578999999998875 5555554 24689999999764 3444455
No 251
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.28 E-value=1.5 Score=42.50 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=51.4
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCC
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDG 344 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g 344 (431)
.+.||++|++++++-.+|..+|+.+--+..+-+........-..+++|+|.---....|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4689999999999999999999998766666554443333323468999987777777777777655443
No 252
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=57.46 E-value=18 Score=33.65 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=42.9
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCeEeeeccccccccccccCCCCCCCHHHHHHHHH
Q 014086 146 AFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKYRLFIGNIPRNWGSEDLQKVVS 203 (431)
Q Consensus 146 afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~~~l~v~~lp~~~~~~~l~~~f~ 203 (431)
|||+|.+..+|..|++.+.... .+.+++..+.+.+.+.=.||..+.....++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 7999999999999998554433 3566888888888888888877776666665544
No 253
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=55.78 E-value=33 Score=23.47 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=44.5
Q ss_pred HHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEecc
Q 014086 290 DQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAK 353 (431)
Q Consensus 290 ~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~ 353 (431)
..|.+.|...| .+..|+-+..++++.+-..-||+.....+-.. .|+=..++|+++.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 58888888888877666778888876644333 244457889998887654
No 254
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.73 E-value=39 Score=30.65 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=4.1
Q ss_pred CCCccccc
Q 014086 423 PDGRIGYV 430 (431)
Q Consensus 423 P~~~~gy~ 430 (431)
|+.+.+|+
T Consensus 103 p~srf~~~ 110 (362)
T KOG3875|consen 103 PESRFGLP 110 (362)
T ss_pred cchhcccc
Confidence 55555543
No 255
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=54.55 E-value=31 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=16.3
Q ss_pred HHHHHHHhccccEEEEEecC
Q 014086 290 DQLKKLFEHHGRITKVVVPP 309 (431)
Q Consensus 290 ~~L~~~F~~~G~v~~v~i~~ 309 (431)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999988666643
No 256
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=54.43 E-value=12 Score=32.31 Aligned_cols=11 Identities=0% Similarity=-0.055 Sum_probs=5.1
Q ss_pred CCHHHHHHHhh
Q 014086 113 ASEHDLRDFCQ 123 (431)
Q Consensus 113 ~t~~~l~~~f~ 123 (431)
+.+.+++..|+
T Consensus 150 ~DW~Em~~Ais 160 (217)
T PF07423_consen 150 VDWNEMLKAIS 160 (217)
T ss_pred cCHHHHHHHHH
Confidence 44444444444
No 257
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.14 E-value=27 Score=32.72 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=44.8
Q ss_pred ccEEEEecCCCCCCHHHHHHHHhcccc-EEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 275 VKAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
...|-|.++|.....+||...|+.|+. --+|..+-+ -.||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 478999999999999999999999975 234444444 3799999999999999864
No 258
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.47 E-value=17 Score=24.20 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=15.5
Q ss_pred HHHHHHhhccCCeEEEEE
Q 014086 116 HDLRDFCQSIGEVTEVRI 133 (431)
Q Consensus 116 ~~l~~~f~~~G~v~~v~i 133 (431)
.+||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999987665
No 259
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=52.36 E-value=50 Score=22.64 Aligned_cols=63 Identities=11% Similarity=0.220 Sum_probs=44.3
Q ss_pred HHHHHHHhccc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 290 DQLKKLFEHHG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 290 ~~L~~~F~~~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
++|++-|...| .|..|.-+..+.+..+-..-||+.....+...+ ++=..+.+..|.|...+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777888877 577887777775655556788988777664443 3444688899999876643
No 260
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.93 E-value=58 Score=23.43 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=41.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH
Q 014086 104 VYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (431)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~ 162 (431)
-|+=-....++..+|++.++. || .|.+|..+..+ ....-|||++.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 344446788999999999987 55 67888877654 2345699999998888877643
No 261
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=51.77 E-value=7.6 Score=40.90 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=4.9
Q ss_pred cceEEEEecC
Q 014086 143 KGFAFVTFRN 152 (431)
Q Consensus 143 ~g~afV~f~~ 152 (431)
+.+-.+.|--
T Consensus 931 ~k~y~ltFi~ 940 (1096)
T TIGR00927 931 RKFFVITFLG 940 (1096)
T ss_pred cceeeehHHH
Confidence 3444555543
No 262
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.31 E-value=2.8 Score=39.42 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=63.7
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQ 355 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~ 355 (431)
.+.|+..||...++.++.-+|..||.|..+.+.+...++...-.+||+-.+ .+|..++..+.-..+.|..+++.++...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 456788899999999999999999999999988877777756678887744 4666777666666777888888887654
Q ss_pred CC
Q 014086 356 AD 357 (431)
Q Consensus 356 ~~ 357 (431)
..
T Consensus 83 ~~ 84 (572)
T KOG4365|consen 83 SE 84 (572)
T ss_pred hh
Confidence 43
No 263
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=50.83 E-value=7.2 Score=36.41 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCCCHH--------HHHHHhhc--cCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHH
Q 014086 101 GSEVYIGGIPHDASEH--------DLRDFCQS--IGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAI 160 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~--------~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al 160 (431)
.+.+|+.++....+.. ++...|.. ++++..++..++.....++|..|++|...+.+++.+
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4678888887765544 89999988 789999999998777889999999999999999887
No 264
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=50.53 E-value=42 Score=34.64 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=2.4
Q ss_pred CCccCC
Q 014086 339 KYELDG 344 (431)
Q Consensus 339 ~~~~~g 344 (431)
+..|.+
T Consensus 530 ~~v~t~ 535 (756)
T KOG2375|consen 530 KPVFTS 535 (756)
T ss_pred cccccC
Confidence 333444
No 265
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=49.23 E-value=15 Score=31.76 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=30.9
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVR 132 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~ 132 (431)
.......+||+-|+|..+|++-|..+.+++|-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3456678999999999999999999999998655443
No 266
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=49.11 E-value=5.4 Score=44.30 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.4
Q ss_pred eEEEEEee
Q 014086 128 VTEVRIMK 135 (431)
Q Consensus 128 v~~v~i~~ 135 (431)
+..|.|+.
T Consensus 286 ~~~v~iic 293 (2849)
T PTZ00415 286 LIKVKIIC 293 (2849)
T ss_pred cceeEEEc
Confidence 34444433
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.63 E-value=3.5 Score=38.77 Aligned_cols=78 Identities=6% Similarity=-0.109 Sum_probs=61.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEeeecccc
Q 014086 101 GSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQ 179 (431)
Q Consensus 101 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~ 179 (431)
+...|+..||..+++.++.-+|..||.|..+.+.+....|...-.+||+-.+ +++..|+..+.-..++|..+++..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 3556888999999999999999999999999888777767777788888765 45666776666666777777776554
No 268
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=44.35 E-value=98 Score=21.83 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=41.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHH
Q 014086 104 VYIGGIPHDASEHDLRDFCQS-IG-EVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDK 162 (431)
Q Consensus 104 l~V~nLp~~~t~~~l~~~f~~-~G-~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~ 162 (431)
-|+=..+.+++..+|+..++. || .|.+|..+.-+. ...-|||++..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 455557889999999999987 55 677777766542 345699999888887776543
No 269
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=40.58 E-value=13 Score=35.49 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=5.0
Q ss_pred cCCeEeeec
Q 014086 168 FKGKKIRCS 176 (431)
Q Consensus 168 ~~g~~i~v~ 176 (431)
+.||+|.|.
T Consensus 426 MrGRpItvA 434 (620)
T COG4547 426 MRGRPITVA 434 (620)
T ss_pred cCCcceehh
Confidence 456666553
No 270
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=39.58 E-value=27 Score=30.29 Aligned_cols=33 Identities=18% Similarity=0.503 Sum_probs=28.1
Q ss_pred cccEEEEecCCCCCCHHHHHHHHhccccEEEEE
Q 014086 274 QVKAVYVKNLPRNVTQDQLKKLFEHHGRITKVV 306 (431)
Q Consensus 274 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~ 306 (431)
...+||+-|+|..+|++.|..+.+++|.+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 347999999999999999999999998655443
No 271
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=38.97 E-value=35 Score=34.91 Aligned_cols=18 Identities=6% Similarity=0.301 Sum_probs=12.8
Q ss_pred CCCC----CCHHHHHHHhhccC
Q 014086 109 IPHD----ASEHDLRDFCQSIG 126 (431)
Q Consensus 109 Lp~~----~t~~~l~~~f~~~G 126 (431)
||+. .|-++|.+++..+-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6654 36788888888764
No 272
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.17 E-value=15 Score=34.96 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.8
Q ss_pred CcEEEE
Q 014086 344 GQALEC 349 (431)
Q Consensus 344 g~~l~v 349 (431)
||+|+-
T Consensus 446 gRKLrY 451 (483)
T KOG2773|consen 446 GRKLRY 451 (483)
T ss_pred Cceeee
Confidence 455443
No 273
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=36.22 E-value=16 Score=34.24 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=47.8
Q ss_pred cEEEEecCCCCCC--------HHHHHHHHhc--cccEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHH
Q 014086 276 KAVYVKNLPRNVT--------QDQLKKLFEH--HGRITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALK 335 (431)
Q Consensus 276 ~~l~V~nLp~~~t--------~~~L~~~F~~--~G~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~ 335 (431)
+.+|+.+.+...+ .+++...|.. ++.+..|+..++.....++|..|++|...+.|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 5666666665443 3599999999 6788888888888666678999999999999999874
No 274
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=36.16 E-value=41 Score=31.27 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=26.3
Q ss_pred EEEEeCCHHHHHHHHHhcCCCccCCcEEEEEeccCCCC
Q 014086 320 GFVHFAERSSAMKALKNTEKYELDGQALECSLAKPQAD 357 (431)
Q Consensus 320 afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~a~~~~~ 357 (431)
|||+|.+..+|..|++.+.... .+.+++..|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998655432 35567777764443
No 275
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=36.12 E-value=44 Score=31.28 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=44.5
Q ss_pred cEEEEecCCCCCCHHHHHHHHhcccc-EEEEEecCCCCCC--CcCCEEEEEeCCHHHHHHHHHhcCCCcc
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGR-ITKVVVPPAKPGQ--EKNRIGFVHFAERSSAMKALKNTEKYEL 342 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~i~~~~~~~--~~rg~afV~F~~~~~A~~Al~~l~~~~~ 342 (431)
..+.|.+||...++.+|.+-...|-. |....+.....+. .-.+.|||.|...++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 57899999999999999887777643 3333333222111 1135789999999996665555665443
No 276
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=36.11 E-value=1.6e+02 Score=27.83 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=58.5
Q ss_pred CcccEEEEecCCC-CCCHHHHHHHHhcc----ccEEEEEecCCCCC----------------------------------
Q 014086 273 SQVKAVYVKNLPR-NVTQDQLKKLFEHH----GRITKVVVPPAKPG---------------------------------- 313 (431)
Q Consensus 273 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~----G~v~~v~i~~~~~~---------------------------------- 313 (431)
..+.+|-|-|+.+ .+...+|..+|+.| |.|..|.|.+...+
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 3457999999987 47788999999876 56777877653311
Q ss_pred -------------------------------CCcCCEEEEEeCCHHHHHHHHHhcCCCccC--CcEEEEEecc
Q 014086 314 -------------------------------QEKNRIGFVHFAERSSAMKALKNTEKYELD--GQALECSLAK 353 (431)
Q Consensus 314 -------------------------------~~~rg~afV~F~~~~~A~~Al~~l~~~~~~--g~~l~v~~a~ 353 (431)
+..--||.|++.+...+.......+|..+. +..+.+.|..
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 000126899999999999999998987775 4566666654
No 277
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=34.44 E-value=1.6e+02 Score=21.22 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
-|+--++..++..+|++.++. || .|..|..+.-..+. --|||++..-..|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~---KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE---KKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---EEEEEEeCCCCcHHHHHHh
Confidence 334445678999999999987 55 47777776655332 3699999998888877554
No 278
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=33.68 E-value=62 Score=26.83 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=42.3
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCC-CCcCCEEEEEeCCHHHHHHHHHhcCCCccCCcEEEEEe
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPG-QEKNRIGFVHFAERSSAMKALKNTEKYELDGQALECSL 351 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~-~~~rg~afV~F~~~~~A~~Al~~l~~~~~~g~~l~v~~ 351 (431)
+++|.. +.....++|.++-+ |.+.+|.+-+.... ...+|-.||+|.+.+.|.+.+.. +.....-+.|...+
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 455555 33333344444444 78888877665544 23368899999999999987764 33334444444433
No 279
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=33.08 E-value=2.8e+02 Score=30.82 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=17.9
Q ss_pred EecCCCCCCHHHHHHHHhccccEEEEEec
Q 014086 280 VKNLPRNVTQDQLKKLFEHHGRITKVVVP 308 (431)
Q Consensus 280 V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 308 (431)
|.-|..++.+.+|+...+.|..-+.-.+.
T Consensus 766 vt~~~hs~~~pd~k~ams~fst~vksd~~ 794 (2238)
T KOG3600|consen 766 VTFIAHSCKDPDLKSAMSKFSTPVKSDFK 794 (2238)
T ss_pred eeeecccCCCchhhhhhhhcCCcccccCc
Confidence 44455567778888888887654433333
No 280
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.93 E-value=51 Score=30.90 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeeCCCC--CCCcceEEEEecCHHHHHHHHHHhCCCcc
Q 014086 100 HGSEVYIGGIPHDASEHDLRDFCQSIGE-VTEVRIMKGKDS--SENKGFAFVTFRNVELASKAIDKLNNTEF 168 (431)
Q Consensus 100 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~--g~~~g~afV~f~~~e~a~~al~~l~~~~~ 168 (431)
.-..|.|++||+..++.+|.+....|-. |....+.....+ ..-.+.|||.|...++...-....+|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467999999999999999887776532 222222211000 11256799999999997777766666653
No 281
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=32.91 E-value=19 Score=34.98 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=5.7
Q ss_pred EEEEEeCCH
Q 014086 319 IGFVHFAER 327 (431)
Q Consensus 319 ~afV~F~~~ 327 (431)
-|.+.+.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 467777663
No 282
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.20 E-value=1.9e+02 Score=20.39 Aligned_cols=56 Identities=20% Similarity=0.276 Sum_probs=40.2
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cc-cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHh
Q 014086 278 VYVKNLPRNVTQDQLKKLFEH-HG-RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKN 336 (431)
Q Consensus 278 l~V~nLp~~~t~~~L~~~F~~-~G-~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~ 336 (431)
-|+-.++..++..+|+..++. |+ .|..|....-+.+. --|||++..-+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~---KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE---KKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc---eEEEEEECCCCcHHHHHHh
Confidence 455556789999999999987 55 47777665554332 3599999988888776443
No 283
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=30.76 E-value=1.8e+02 Score=22.27 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhhc-cC----CeEEEEEeeCCCCCCCcceEEEEecCHHHHHH
Q 014086 112 DASEHDLRDFCQS-IG----EVTEVRIMKGKDSSENKGFAFVTFRNVELASK 158 (431)
Q Consensus 112 ~~t~~~l~~~f~~-~G----~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~ 158 (431)
.++..+|++-++. |- .|.-.-+....-.|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788899987765 32 2333333444456888889876 677776654
No 284
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=29.28 E-value=87 Score=25.80 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.1
Q ss_pred CCCCCCCc
Q 014086 419 PMLLPDGR 426 (431)
Q Consensus 419 p~~~P~~~ 426 (431)
|.+.|+..
T Consensus 161 py~~~p~p 168 (182)
T PF06495_consen 161 PYPRPPAP 168 (182)
T ss_pred ccCCCCCC
Confidence 33334433
No 285
>PRK11901 hypothetical protein; Reviewed
Probab=29.21 E-value=91 Score=28.72 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=38.6
Q ss_pred cEEEEecCCCCCCHHHHHHHHhccccEEEEEecCCCCCCCcCCEEEE--EeCCHHHHHHHHHhcCC
Q 014086 276 KAVYVKNLPRNVTQDQLKKLFEHHGRITKVVVPPAKPGQEKNRIGFV--HFAERSSAMKALKNTEK 339 (431)
Q Consensus 276 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~~rg~afV--~F~~~~~A~~Al~~l~~ 339 (431)
.+|-|-. ...++.|..|..+++ +..+++......+. .-|..| .|.+.++|..|+..|--
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 4555544 356788888888775 34455555443333 235544 68999999999998753
No 286
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.03 E-value=2e+02 Score=19.81 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=36.4
Q ss_pred ceEEEEecCHHHHHHHHHHhCCCccCCeEeeeccccccc-cccccCCCCCCCHHHHHHHHHhhCC
Q 014086 144 GFAFVTFRNVELASKAIDKLNNTEFKGKKIRCSTSQAKY-RLFIGNIPRNWGSEDLQKVVSEVGP 207 (431)
Q Consensus 144 g~afV~f~~~e~a~~al~~l~~~~~~g~~i~v~~~~~~~-~l~v~~lp~~~~~~~l~~~f~~~g~ 207 (431)
.+.+|.|.|..+|.+|-+.|...-+..+-+-+=..-... -+.+. ++ ..+.+.+..+++..+-
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~i~~~CG~al~-~~-~~d~~~i~~~l~~~~i 64 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPREISAGCGLALR-FE-PEDLEKIKEILEENGI 64 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChhccCCCCEEEE-EC-hhhHHHHHHHHHHCCC
Confidence 368999999999999998888776655555332211111 11111 01 1345566777776664
No 287
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=27.90 E-value=1.4e+02 Score=21.39 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=23.9
Q ss_pred cEEEEEecCCCCCCCcCCEEEEEeCCHHHHHHHHHhcCC
Q 014086 301 RITKVVVPPAKPGQEKNRIGFVHFAERSSAMKALKNTEK 339 (431)
Q Consensus 301 ~v~~v~i~~~~~~~~~rg~afV~F~~~~~A~~Al~~l~~ 339 (431)
.|.+|-.+.+- +||-||+=.+..+...|++.+.+
T Consensus 33 ~I~Si~~~~~l-----kGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSL-----KGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTS-----TSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCC-----ceEEEEEeCCHHHHHHHHhcccc
Confidence 45666665543 79999999999999999987665
No 288
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.39 E-value=1.2e+02 Score=30.22 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=46.4
Q ss_pred CEEEEcCCCCCCC---HHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCCccCCeEe
Q 014086 102 SEVYIGGIPHDAS---EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNTEFKGKKI 173 (431)
Q Consensus 102 ~~l~V~nLp~~~t---~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~~~~g~~i 173 (431)
.-=+||||+.-.. -..+.++-++||+|..+++=. .-.|...+.+.|+.|+. -++..+.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 3347888875433 355666777999999888722 24788899999999995 67888888886
No 289
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.71 E-value=39 Score=33.12 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=12.5
Q ss_pred EEEEcCCCCCCCHHHHHHHh
Q 014086 103 EVYIGGIPHDASEHDLRDFC 122 (431)
Q Consensus 103 ~l~V~nLp~~~t~~~l~~~f 122 (431)
+-.|+.||--++.++-..++
T Consensus 800 k~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 800 KNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHhcCCcccchHHHHHHh
Confidence 34567777777766655544
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.18 E-value=1.1e+02 Score=28.55 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=12.7
Q ss_pred CccCCcEEEEEeccCCCCCCC
Q 014086 340 YELDGQALECSLAKPQADQKS 360 (431)
Q Consensus 340 ~~~~g~~l~v~~a~~~~~~~~ 360 (431)
..+..+.-++.+++.......
T Consensus 245 ~~~~~r~er~r~~r~~~e~~~ 265 (377)
T KOG1308|consen 245 REIKERVERVRYAREPEEMAN 265 (377)
T ss_pred hcccccccccccccchhhhcC
Confidence 356667777777765555443
No 291
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.01 E-value=2.3e+02 Score=27.47 Aligned_cols=7 Identities=14% Similarity=0.544 Sum_probs=2.8
Q ss_pred EEcCCCC
Q 014086 105 YIGGIPH 111 (431)
Q Consensus 105 ~V~nLp~ 111 (431)
.+.-||.
T Consensus 188 ll~elPp 194 (483)
T KOG2236|consen 188 LLDELPP 194 (483)
T ss_pred hhhcCCC
Confidence 3334443
No 292
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=25.63 E-value=3e+02 Score=29.27 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=8.9
Q ss_pred ccEEEEecCCCCCCHHHH
Q 014086 275 VKAVYVKNLPRNVTQDQL 292 (431)
Q Consensus 275 ~~~l~V~nLp~~~t~~~L 292 (431)
.+|+++.|-+..-..++.
T Consensus 593 gkC~s~as~~~s~s~ed~ 610 (1114)
T KOG3753|consen 593 GKCNSIASPPLSSSREDM 610 (1114)
T ss_pred cceecCCCCccccccccc
Confidence 455666555544433333
No 293
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.55 E-value=1.2e+02 Score=21.75 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=21.3
Q ss_pred CeEEEEEeeCCCCCCCcceEEEEecC
Q 014086 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (431)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~f~~ 152 (431)
.|.+|+|..-...|+-+++|-|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888877779999999999965
No 294
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=24.45 E-value=28 Score=31.62 Aligned_cols=8 Identities=0% Similarity=-0.027 Sum_probs=5.0
Q ss_pred CCEEEEcC
Q 014086 101 GSEVYIGG 108 (431)
Q Consensus 101 ~~~l~V~n 108 (431)
...+|..+
T Consensus 84 t~~~F~~~ 91 (285)
T PF03896_consen 84 TTILFPKP 91 (285)
T ss_pred EEEEeccc
Confidence 45667766
No 295
>PRK11901 hypothetical protein; Reviewed
Probab=24.27 E-value=2.6e+02 Score=25.91 Aligned_cols=66 Identities=12% Similarity=0.264 Sum_probs=43.6
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEE--EecCHHHHHHHHHHhCCC
Q 014086 96 ALPPHGSEVYIGGIPHDASEHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFV--TFRNVELASKAIDKLNNT 166 (431)
Q Consensus 96 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV--~f~~~e~a~~al~~l~~~ 166 (431)
..+...-+|-|-.+ ..++.|..|.++++ +..++++.....|+.. |..| .|.+.++|..|+..|-..
T Consensus 240 s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 240 SAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred cCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 33455556666554 45788999988886 4556776655445443 2222 689999999999887643
No 296
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=24.27 E-value=49 Score=33.21 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=5.0
Q ss_pred CCEEEEcCCCC
Q 014086 101 GSEVYIGGIPH 111 (431)
Q Consensus 101 ~~~l~V~nLp~ 111 (431)
.-.||-+-...
T Consensus 295 ~Y~vfTt~fDe 305 (600)
T TIGR01651 295 DYKVFTTAFDE 305 (600)
T ss_pred cceecchhhhh
Confidence 33455544443
No 297
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=51 Score=33.17 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=9.9
Q ss_pred HHHHHhhccCCeEEEE
Q 014086 117 DLRDFCQSIGEVTEVR 132 (431)
Q Consensus 117 ~l~~~f~~~G~v~~v~ 132 (431)
..++-|++|--+.+.+
T Consensus 466 ~ArerfqkYRGLksl~ 481 (754)
T KOG1980|consen 466 SARERFQKYRGLKSLR 481 (754)
T ss_pred HHHHHHHHhccccccc
Confidence 4677777775555443
No 298
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.46 E-value=51 Score=33.56 Aligned_cols=12 Identities=0% Similarity=-0.106 Sum_probs=5.4
Q ss_pred CCCHHHHHHHhh
Q 014086 112 DASEHDLRDFCQ 123 (431)
Q Consensus 112 ~~t~~~l~~~f~ 123 (431)
.+|.+.|...+.
T Consensus 211 eiT~~~v~kkL~ 222 (595)
T PF05470_consen 211 EITPEMVFKKLK 222 (595)
T ss_pred chhHHHHHHHHH
Confidence 345554444433
No 299
>COG4907 Predicted membrane protein [Function unknown]
Probab=23.46 E-value=1.9e+02 Score=28.06 Aligned_cols=41 Identities=10% Similarity=0.235 Sum_probs=23.1
Q ss_pred HHHHHHHHhccc-----cEEEEEecCCCCCCCcCCEEEEEeCC----HHHHHHHHHhcCC
Q 014086 289 QDQLKKLFEHHG-----RITKVVVPPAKPGQEKNRIGFVHFAE----RSSAMKALKNTEK 339 (431)
Q Consensus 289 ~~~L~~~F~~~G-----~v~~v~i~~~~~~~~~rg~afV~F~~----~~~A~~Al~~l~~ 339 (431)
++..+++++.|. .+++|++..+ +..|.+ .+...+|++.++-
T Consensus 488 W~aFKnfLsd~s~lke~~pesI~~W~~----------ylVYatALGV~dkVvkam~~~~~ 537 (595)
T COG4907 488 WQAFKNFLSDYSQLKEAKPESIHLWEQ----------YLVYATALGVSDKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHhHHHHhhCCCcceehHhh----------hhhhhhhhccHHHHHHHHHHhCc
Confidence 355556666554 3556666554 334444 4567777776654
No 300
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.30 E-value=66 Score=18.86 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHhhccC
Q 014086 111 HDASEHDLRDFCQSIG 126 (431)
Q Consensus 111 ~~~t~~~l~~~f~~~G 126 (431)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998864
No 301
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=22.65 E-value=1.4e+02 Score=22.01 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=20.6
Q ss_pred CeEEEEEeeCCCCCCCcceEEEEecC
Q 014086 127 EVTEVRIMKGKDSSENKGFAFVTFRN 152 (431)
Q Consensus 127 ~v~~v~i~~~~~~g~~~g~afV~f~~ 152 (431)
.|++|+|.+-...|+-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788887765668899999999864
No 302
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.52 E-value=69 Score=27.78 Aligned_cols=11 Identities=27% Similarity=-0.012 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 014086 153 VELASKAIDKL 163 (431)
Q Consensus 153 ~e~a~~al~~l 163 (431)
-.+..+|+...
T Consensus 152 W~Em~~Ais~a 162 (217)
T PF07423_consen 152 WNEMLKAISYA 162 (217)
T ss_pred HHHHHHHHHHh
Confidence 34555566443
No 303
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.29 E-value=28 Score=30.87 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=3.1
Q ss_pred CCCHHHH
Q 014086 286 NVTQDQL 292 (431)
Q Consensus 286 ~~t~~~L 292 (431)
.+|.++|
T Consensus 184 ~lTQeEl 190 (240)
T PF05764_consen 184 PLTQEEL 190 (240)
T ss_pred CCCHHHH
Confidence 3444444
No 304
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.17 E-value=2.2e+02 Score=30.15 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCccCCCCCCCCcc
Q 014086 369 PSLLQNYPPHIGYGLA-GGTYGALGAGFGAAAFAQ--PLVYGRGASPAGMAMMPMLLPDGRI 427 (431)
Q Consensus 369 ~~~~~~~~~~~~~g~~-~~~~g~~g~g~~~~~~~~--~~~~g~g~~~~~~~~~p~~~P~~~~ 427 (431)
++..+.+++...+-.+ .+..+..++|+-+.++.. ++.+++|.+++..+.+|.-.++.++
T Consensus 185 ~~~~~a~pp~a~~~~p~p~~p~p~~pg~~P~~~~s~~~~~g~~~~g~~p~~~~~~rldp~~i 246 (1007)
T KOG1984|consen 185 SGMPPAFPPGAQMQPPPPGAPRPSGPGYFPQSFSSGAPAPGGPGSGPGPNQPPPQRLDPNAI 246 (1007)
T ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCChhhC
No 305
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=21.69 E-value=5e+02 Score=27.20 Aligned_cols=11 Identities=9% Similarity=0.005 Sum_probs=6.2
Q ss_pred CCCCCcccccC
Q 014086 421 LLPDGRIGYVL 431 (431)
Q Consensus 421 ~~P~~~~gy~~ 431 (431)
+.||+.++|++
T Consensus 343 pvpp~~~~~~~ 353 (830)
T KOG1923|consen 343 PVPPPQRLMIP 353 (830)
T ss_pred CCCCCcccccc
Confidence 34566666653
No 306
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=20.27 E-value=39 Score=31.26 Aligned_cols=48 Identities=23% Similarity=0.249 Sum_probs=40.6
Q ss_pred HHHHHHHhhccCCeEEEEEeeCCCCCCCcceEEEEecCHHHHHHHHHHhCCC
Q 014086 115 EHDLRDFCQSIGEVTEVRIMKGKDSSENKGFAFVTFRNVELASKAIDKLNNT 166 (431)
Q Consensus 115 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~e~a~~al~~l~~~ 166 (431)
...|.+++.+.|.|..-.+.+.. +.|.+||-.-..+++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 46789999999988877776654 4889999999999999999988865
No 307
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=5.3e+02 Score=24.06 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=5.5
Q ss_pred CCCCCccccc
Q 014086 421 LLPDGRIGYV 430 (431)
Q Consensus 421 ~~P~~~~gy~ 430 (431)
++|+.+.|++
T Consensus 196 ~yp~n~~~~~ 205 (365)
T KOG2391|consen 196 PYPPNASGKL 205 (365)
T ss_pred cCCCCccccc
Confidence 4566665553
Done!